Query psy5697
Match_columns 145
No_of_seqs 137 out of 1168
Neff 7.4
Searched_HMMs 46136
Date Sat Aug 17 00:20:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5697.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5697hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05850 Ig1_Contactin-2 First 99.8 2.5E-19 5.5E-24 121.1 12.1 87 46-138 1-93 (94)
2 cd05848 Ig1_Contactin-5 First 99.8 2.2E-19 4.9E-24 121.4 11.5 87 46-138 1-93 (94)
3 cd05849 Ig1_Contactin-1 First 99.8 1.5E-18 3.2E-23 117.4 11.1 86 46-138 1-92 (93)
4 cd05874 Ig6_NrCAM Sixth immuno 99.8 5.1E-18 1.1E-22 110.9 9.1 75 61-138 1-77 (77)
5 cd05851 Ig3_Contactin-1 Third 99.7 1.1E-17 2.3E-22 111.8 9.3 83 46-137 1-87 (88)
6 cd05875 Ig6_hNeurofascin_like 99.7 1.5E-17 3.3E-22 108.6 9.6 75 61-138 1-77 (77)
7 cd07693 Ig1_Robo First immunog 99.7 2.4E-17 5.1E-22 110.3 10.2 91 46-138 1-98 (100)
8 cd04967 Ig1_Contactin First Ig 99.7 3E-17 6.4E-22 109.9 10.1 83 47-135 2-90 (91)
9 cd05738 Ig2_RPTP_IIa_LAR_like 99.7 3.6E-17 7.7E-22 105.7 9.3 71 61-138 1-72 (74)
10 cd05733 Ig6_L1-CAM_like Sixth 99.7 2.3E-17 4.9E-22 107.5 7.8 75 61-138 1-77 (77)
11 cd05892 Ig_Myotilin_C C-termin 99.7 4.3E-17 9.4E-22 106.2 9.1 69 61-136 1-74 (75)
12 cd05893 Ig_Palladin_C C-termin 99.7 4E-17 8.7E-22 106.3 8.7 64 61-131 1-68 (75)
13 cd05722 Ig1_Neogenin First imm 99.7 6.8E-17 1.5E-21 108.8 10.0 89 48-138 1-94 (95)
14 cd05762 Ig8_MLCK Eighth immuno 99.7 1.2E-16 2.6E-21 108.9 11.1 88 47-141 1-94 (98)
15 cd05723 Ig4_Neogenin Fourth im 99.7 8.2E-17 1.8E-21 103.2 9.4 62 61-130 2-63 (71)
16 cd05852 Ig5_Contactin-1 Fifth 99.7 5.7E-17 1.2E-21 105.0 8.6 68 61-136 4-72 (73)
17 cd05867 Ig4_L1-CAM_like Fourth 99.7 1.3E-16 2.9E-21 103.4 9.8 64 61-131 4-68 (76)
18 cd05868 Ig4_NrCAM Fourth immun 99.7 1.1E-16 2.3E-21 104.1 9.3 70 61-137 4-75 (76)
19 cd04968 Ig3_Contactin_like Thi 99.7 2.6E-16 5.6E-21 104.5 10.6 83 46-137 1-87 (88)
20 cd05734 Ig7_DSCAM Seventh immu 99.7 1.2E-16 2.5E-21 104.2 8.7 72 61-138 1-78 (79)
21 cd05745 Ig3_Peroxidasin Third 99.7 8.7E-17 1.9E-21 103.7 8.0 62 61-130 5-66 (74)
22 cd05749 Ig2_Tyro3_like Second 99.7 1.1E-16 2.4E-21 105.9 8.0 76 49-137 1-80 (81)
23 cd05760 Ig2_PTK7 Second immuno 99.7 2.3E-16 5E-21 102.7 9.4 73 61-140 1-75 (77)
24 cd05744 Ig_Myotilin_C_like Imm 99.7 4.2E-16 9E-21 101.2 9.4 65 61-132 1-69 (75)
25 cd05876 Ig3_L1-CAM Third immun 99.7 2.8E-16 6E-21 100.7 7.9 62 61-130 1-62 (71)
26 cd05728 Ig4_Contactin-2-like F 99.7 4E-16 8.6E-21 103.3 8.6 73 49-130 2-77 (85)
27 cd05747 Ig5_Titin_like M5, fif 99.7 6.9E-16 1.5E-20 103.4 9.7 78 45-130 2-85 (92)
28 cd05746 Ig4_Peroxidasin Fourth 99.7 4.9E-16 1.1E-20 99.0 7.9 62 61-130 1-62 (69)
29 cd05763 Ig_1 Subgroup of the i 99.7 7.1E-16 1.5E-20 99.5 8.5 70 61-137 1-74 (75)
30 cd05865 Ig1_NCAM-1 First immun 99.7 2.6E-15 5.6E-20 102.2 11.5 72 60-137 17-93 (96)
31 cd04978 Ig4_L1-NrCAM_like Four 99.7 1.1E-15 2.4E-20 98.3 9.1 70 61-137 4-75 (76)
32 cd05740 Ig_CEACAM_D4 Fourth im 99.7 2.3E-15 5E-20 101.3 11.0 70 61-139 21-90 (91)
33 KOG3513|consensus 99.6 8.2E-16 1.8E-20 138.3 11.0 116 10-140 303-423 (1051)
34 cd05730 Ig3_NCAM-1_like Third 99.6 1.9E-15 4E-20 101.6 10.2 71 61-138 21-93 (95)
35 cd05724 Ig2_Robo Second immuno 99.6 2.1E-15 4.6E-20 99.0 9.6 72 60-138 13-85 (86)
36 cd04969 Ig5_Contactin_like Fif 99.6 1.8E-15 3.8E-20 97.2 8.8 68 61-136 4-72 (73)
37 cd05764 Ig_2 Subgroup of the i 99.6 2E-15 4.3E-20 96.9 9.0 63 61-130 4-66 (74)
38 cd05863 Ig2_VEGFR-3 Second imm 99.6 1.5E-15 3.3E-20 97.1 8.0 64 61-137 1-65 (67)
39 cd05725 Ig3_Robo Third immunog 99.6 1.8E-15 4E-20 96.0 8.2 61 61-130 1-61 (69)
40 cd05748 Ig_Titin_like Immunogl 99.6 3.3E-15 7.1E-20 96.0 9.4 63 61-130 2-66 (74)
41 cd05737 Ig_Myomesin_like_C C-t 99.6 3.1E-15 6.8E-20 100.3 9.7 63 61-130 19-84 (92)
42 cd04976 Ig2_VEGFR Second immun 99.6 2.4E-15 5.3E-20 96.6 8.8 68 61-137 1-69 (71)
43 cd05864 Ig2_VEGFR-2 Second imm 99.6 1.8E-15 4E-20 97.3 8.1 68 61-138 1-69 (70)
44 cd04972 Ig_TrkABC_d4 Fourth do 99.6 2.7E-15 5.9E-20 100.1 9.0 64 60-130 17-82 (90)
45 cd05735 Ig8_DSCAM Eight immuno 99.6 6E-15 1.3E-19 98.5 10.4 75 61-142 4-86 (88)
46 cd05866 Ig1_NCAM-2 First immun 99.6 6.6E-15 1.4E-19 99.5 10.6 71 60-138 17-90 (92)
47 cd05870 Ig5_NCAM-2 Fifth immun 99.6 5.5E-15 1.2E-19 100.2 9.9 78 46-130 2-90 (98)
48 cd04975 Ig4_SCFR_like Fourth i 99.6 4.7E-15 1E-19 101.8 9.4 71 61-138 21-100 (101)
49 cd05726 Ig4_Robo Fhird immunog 99.6 6.3E-15 1.4E-19 98.3 9.7 71 61-138 4-82 (90)
50 cd05854 Ig6_Contactin-2 Sixth 99.6 5.3E-15 1.2E-19 98.2 9.1 72 61-139 3-83 (85)
51 cd05731 Ig3_L1-CAM_like Third 99.6 3.5E-15 7.7E-20 94.6 7.6 62 61-130 1-62 (71)
52 cd05869 Ig5_NCAM-1 Fifth immun 99.6 1E-14 2.2E-19 98.6 10.0 78 46-130 2-89 (97)
53 cd04971 Ig_TrKABC_d5 Fifth dom 99.6 7.2E-15 1.6E-19 97.0 8.9 62 63-131 3-73 (81)
54 cd04974 Ig3_FGFR Third immunog 99.6 6.5E-15 1.4E-19 98.5 8.8 71 61-137 4-89 (90)
55 cd04970 Ig6_Contactin_like Six 99.6 6.8E-15 1.5E-19 97.1 8.8 72 61-139 3-83 (85)
56 cd05739 Ig3_RPTP_IIa_LAR_like 99.6 7.5E-15 1.6E-19 94.0 8.6 59 61-130 4-62 (69)
57 cd05894 Ig_C5_MyBP-C C5 immuno 99.6 1.3E-14 2.9E-19 96.5 9.9 63 61-130 13-78 (86)
58 PF07679 I-set: Immunoglobulin 99.6 1.3E-14 2.7E-19 95.8 9.7 83 47-136 1-89 (90)
59 cd05859 Ig4_PDGFR-alpha Fourth 99.6 1.3E-14 2.9E-19 99.5 9.7 72 60-138 20-100 (101)
60 cd05855 Ig_TrkB_d5 Fifth domai 99.6 7.5E-15 1.6E-19 96.8 8.0 61 63-130 3-70 (79)
61 cd05857 Ig2_FGFR Second immuno 99.6 1.4E-14 3E-19 95.1 8.9 63 61-130 12-77 (85)
62 cd05773 Ig8_hNephrin_like Eigh 99.6 2.5E-14 5.5E-19 99.2 10.3 72 61-138 26-105 (109)
63 cd05743 Ig_Perlecan_D2_like Im 99.6 1.7E-14 3.7E-19 93.9 8.9 66 61-133 4-71 (78)
64 cd05853 Ig6_Contactin-4 Sixth 99.6 2.7E-14 5.9E-19 95.4 8.8 73 61-140 3-84 (85)
65 cd05858 Ig3_FGFR-2 Third immun 99.6 3.1E-14 6.7E-19 95.1 8.6 71 61-137 4-89 (90)
66 cd05732 Ig5_NCAM-1_like Fifth 99.6 4.7E-14 1E-18 94.5 9.5 78 46-130 2-88 (96)
67 cd04977 Ig1_NCAM-1_like First 99.5 9.5E-14 2.1E-18 93.3 10.7 71 60-137 17-90 (92)
68 cd07702 Ig2_VEGFR-1 Second imm 99.5 3.6E-14 7.8E-19 91.9 8.3 68 62-137 2-70 (72)
69 cd05736 Ig2_Follistatin_like S 99.5 6.4E-14 1.4E-18 90.4 9.3 71 61-138 1-74 (76)
70 cd05758 Ig5_KIRREL3-like Fifth 99.5 4.8E-14 1E-18 95.5 8.8 65 61-131 19-92 (98)
71 cd05750 Ig_Pro_neuregulin Immu 99.5 5.4E-14 1.2E-18 90.0 7.4 63 61-130 1-69 (75)
72 KOG4194|consensus 99.5 3.8E-14 8.2E-19 121.8 8.4 116 10-138 583-704 (873)
73 cd05891 Ig_M-protein_C C-termi 99.5 1.3E-13 2.8E-18 92.7 9.3 63 61-130 19-84 (92)
74 cd05765 Ig_3 Subgroup of the i 99.5 8.8E-14 1.9E-18 90.2 8.3 64 61-130 4-73 (81)
75 cd05856 Ig2_FGFRL1-like Second 99.5 5.6E-14 1.2E-18 91.0 6.9 63 61-130 12-74 (82)
76 cd04973 Ig1_FGFR First immunog 99.5 4.6E-13 9.9E-18 87.5 8.6 61 60-130 11-71 (79)
77 KOG3513|consensus 99.5 4.5E-13 9.7E-18 120.9 10.9 122 11-142 203-333 (1051)
78 cd05756 Ig1_IL1R_like First im 99.4 1.2E-12 2.6E-17 88.6 7.8 64 60-130 16-86 (94)
79 cd05895 Ig_Pro_neuregulin-1 Im 99.4 1.5E-12 3.2E-17 84.0 6.9 63 61-130 1-70 (76)
80 KOG4221|consensus 99.4 9E-12 1.9E-16 113.2 13.5 91 46-144 237-332 (1381)
81 cd05754 Ig3_Perlecan_like Thir 99.3 7.3E-12 1.6E-16 82.4 7.6 61 60-131 18-79 (85)
82 cd05742 Ig1_VEGFR_like First i 99.3 8E-12 1.7E-16 82.1 7.4 70 61-137 4-83 (84)
83 cd04979 Ig_Semaphorin_C Immuno 99.3 2.9E-11 6.4E-16 80.2 10.1 73 61-141 14-88 (89)
84 cd05727 Ig2_Contactin-2-like S 99.3 3.6E-12 7.8E-17 86.9 5.6 65 59-130 19-86 (96)
85 KOG4222|consensus 99.3 7.7E-12 1.7E-16 113.0 7.1 94 43-138 28-126 (1281)
86 cd05753 Ig2_FcgammaR_like Seco 99.3 2.4E-11 5.1E-16 80.3 7.2 77 49-138 3-82 (83)
87 cd05845 Ig2_L1-CAM_like Second 99.3 1.2E-11 2.5E-16 84.3 5.6 65 59-130 19-85 (95)
88 cd05752 Ig1_FcgammaR_like Frst 99.3 2.7E-11 5.9E-16 79.3 7.1 72 47-137 1-76 (78)
89 cd05729 Ig2_FGFR_like Second i 99.2 8.9E-11 1.9E-15 76.1 9.1 63 61-130 12-77 (85)
90 cd05873 Ig_Sema4D_like Immunog 99.2 2.4E-11 5.3E-16 81.4 6.5 59 60-127 13-71 (87)
91 smart00408 IGc2 Immunoglobulin 99.2 6.6E-11 1.4E-15 71.3 7.7 59 61-128 5-63 (63)
92 cd05757 Ig2_IL1R_like Second i 99.2 8.6E-11 1.9E-15 79.3 8.0 62 60-130 12-78 (92)
93 PHA02826 IL-1 receptor-like pr 99.2 2.5E-10 5.4E-15 88.9 11.4 72 60-138 146-225 (227)
94 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 2.6E-10 5.7E-15 75.3 9.2 73 61-140 4-83 (84)
95 PHA02785 IL-beta-binding prote 99.2 4.5E-10 9.8E-15 91.4 11.8 115 10-133 186-321 (326)
96 cd05898 Ig5_KIRREL3 Fifth immu 99.1 3.5E-10 7.5E-15 77.4 8.8 66 59-130 17-91 (98)
97 PF13895 Ig_2: Immunoglobulin 99.1 6.2E-10 1.4E-14 70.9 9.3 77 47-138 2-79 (80)
98 cd05871 Ig_Semaphorin_classIII 99.1 7.7E-10 1.7E-14 74.4 8.6 71 61-139 14-88 (91)
99 PF13927 Ig_3: Immunoglobulin 99.1 3.6E-10 7.8E-15 70.9 5.9 72 46-125 1-75 (75)
100 cd05882 Ig1_Necl-1 First (N-te 99.1 2.2E-09 4.7E-14 72.9 10.1 59 61-125 15-83 (95)
101 cd05759 Ig2_KIRREL3-like Secon 99.1 1.3E-09 2.9E-14 71.1 8.6 70 61-137 2-80 (82)
102 cd07701 Ig1_Necl-3 First (N-te 99.0 2.2E-09 4.9E-14 72.6 9.3 70 61-136 15-94 (95)
103 KOG4194|consensus 99.0 2.9E-10 6.3E-15 98.3 5.8 123 6-138 448-608 (873)
104 KOG4222|consensus 99.0 3.3E-10 7.1E-15 102.7 5.8 95 41-143 220-318 (1281)
105 cd05885 Ig2_Necl-4 Second immu 99.0 1.2E-09 2.7E-14 72.1 6.9 64 61-131 2-70 (80)
106 cd05862 Ig1_VEGFR First immuno 99.0 2.9E-09 6.2E-14 70.7 8.4 72 61-138 4-85 (86)
107 smart00409 IG Immunoglobulin. 98.9 2.3E-08 4.9E-13 63.0 10.0 71 61-138 12-84 (86)
108 smart00410 IG_like Immunoglobu 98.9 2.3E-08 4.9E-13 63.0 10.0 71 61-138 12-84 (86)
109 cd07690 Ig1_CD4 First immunogl 98.9 5.1E-09 1.1E-13 71.1 6.9 65 60-130 9-91 (94)
110 cd05717 Ig1_Necl-1-3_like Firs 98.9 2.2E-08 4.8E-13 67.0 9.5 70 60-135 14-93 (95)
111 KOG4221|consensus 98.9 1.9E-09 4E-14 98.4 4.2 80 44-131 326-408 (1381)
112 cd05897 Ig2_IL1R2_like Second 98.9 1.3E-08 2.8E-13 69.3 7.4 72 61-139 13-93 (95)
113 PHA02785 IL-beta-binding prote 98.8 3.9E-08 8.5E-13 80.1 9.3 69 60-139 43-118 (326)
114 PF00047 ig: Immunoglobulin do 98.8 2.2E-08 4.8E-13 61.8 5.6 56 61-123 4-64 (64)
115 PHA02826 IL-1 receptor-like pr 98.7 9.1E-08 2E-12 74.5 7.9 71 60-137 39-132 (227)
116 cd05751 Ig1_LILRB1_like First 98.6 1.9E-07 4.1E-12 62.3 7.1 84 46-138 2-89 (91)
117 cd05741 Ig_CEACAM_D1_like Firs 98.6 6.7E-07 1.4E-11 59.0 8.9 72 61-138 4-91 (92)
118 cd05761 Ig2_Necl-1-4_like Seco 98.5 7E-07 1.5E-11 58.5 6.3 65 61-130 2-71 (82)
119 cd05774 Ig_CEACAM_D1 First imm 98.4 6.7E-06 1.5E-10 56.8 10.5 70 60-137 15-103 (105)
120 cd05872 Ig_Sema4B_like Immunog 98.4 3.2E-06 6.9E-11 56.3 7.7 67 61-138 14-81 (85)
121 cd05896 Ig1_IL1RAPL-1_like Fir 98.3 3.2E-06 7E-11 58.4 7.3 63 61-130 18-96 (104)
122 cd05860 Ig4_SCFR Fourth immuno 98.3 7.4E-06 1.6E-10 56.3 9.1 72 60-138 20-100 (101)
123 cd04983 IgV_TCR_alpha_like Imm 98.3 3.5E-06 7.6E-11 57.3 7.4 62 61-128 16-94 (109)
124 cd05714 Ig_CSPGs_LP Immunoglob 98.3 1.9E-05 4.2E-10 53.6 10.5 65 60-130 4-94 (106)
125 cd07705 Ig2_Necl-1 Second immu 98.3 1E-05 2.2E-10 53.3 8.4 66 61-130 2-72 (83)
126 cd00098 IgC Immunoglobulin Con 98.2 1.8E-06 3.9E-11 57.2 4.6 66 60-129 15-87 (95)
127 cd05718 Ig1_PVR_like First imm 98.2 1.9E-05 4.1E-10 52.6 9.4 64 61-130 3-89 (98)
128 cd05771 IgC_Tapasin_R Tapasin- 98.2 9E-06 1.9E-10 58.0 8.1 111 5-127 4-131 (139)
129 cd05899 IgV_TCR_beta Immunoglo 98.2 6.6E-06 1.4E-10 56.4 7.0 62 60-128 15-96 (110)
130 cd05877 Ig_LP_like Immunoglobu 98.2 2.2E-05 4.7E-10 53.3 9.5 73 60-138 4-103 (106)
131 cd05881 Ig1_Necl-2 First (N-te 98.2 3.2E-05 6.8E-10 52.5 10.1 63 61-129 15-87 (95)
132 cd05775 Ig_SLAM-CD84_like_N N- 98.2 1.6E-05 3.4E-10 53.7 8.0 74 60-139 6-96 (97)
133 cd00099 IgV Immunoglobulin var 98.1 1.6E-05 3.4E-10 53.4 6.6 63 60-128 8-91 (105)
134 cd05884 Ig2_Necl-3 Second immu 98.1 2.1E-05 4.5E-10 51.9 7.0 62 61-129 2-71 (83)
135 cd05713 Ig_MOG_like Immunoglob 98.1 6.4E-05 1.4E-09 50.4 9.5 33 99-138 66-98 (100)
136 cd00096 Ig Immunoglobulin doma 98.0 1.3E-05 2.8E-10 47.5 5.1 61 61-128 1-67 (74)
137 cd04980 IgV_L_kappa Immunoglob 98.0 3.9E-05 8.5E-10 52.2 7.9 62 60-127 17-94 (106)
138 cd05879 Ig_P0 Immunoglobulin ( 98.0 8.1E-05 1.8E-09 52.2 9.4 67 58-130 13-106 (116)
139 cd05883 Ig2_Necl-2 Second immu 98.0 7.5E-05 1.6E-09 49.4 8.5 62 61-129 2-69 (82)
140 cd05886 Ig1_Nectin-1_like Firs 98.0 0.00015 3.2E-09 49.5 10.1 35 97-138 62-97 (99)
141 cd05900 Ig_Aggrecan Immunoglob 97.9 0.00023 4.9E-09 49.6 10.6 73 60-138 4-109 (112)
142 cd05888 Ig1_Nectin-4_like Frst 97.9 0.00022 4.7E-09 48.3 9.4 71 61-138 3-98 (100)
143 cd05887 Ig1_Nectin-3_like Firs 97.8 0.00026 5.7E-09 48.1 8.8 71 61-137 3-95 (96)
144 cd04982 IgV_TCR_gamma Immunogl 97.8 8.5E-05 1.8E-09 51.2 6.1 60 61-126 16-99 (116)
145 cd05878 Ig_Aggrecan_like Immun 97.7 0.00061 1.3E-08 47.0 9.9 61 61-128 5-96 (110)
146 cd05715 Ig_P0-like Immunoglobu 97.7 0.00031 6.8E-09 48.6 8.5 27 98-130 80-106 (116)
147 cd05755 Ig2_ICAM-1_like Second 97.7 0.00024 5.2E-09 48.7 7.5 63 61-130 19-88 (100)
148 PF07686 V-set: Immunoglobulin 97.7 0.00028 6.1E-09 47.1 7.7 71 61-137 19-112 (114)
149 cd05880 Ig_EVA1 Immunoglobulin 97.7 0.00036 7.9E-09 48.5 8.1 27 97-129 78-104 (115)
150 cd04984 IgV_L_lambda Immunoglo 97.7 0.00028 6E-09 47.2 7.1 61 60-126 8-85 (98)
151 cd05901 Ig_Versican Immunoglob 97.6 0.00098 2.1E-08 47.0 10.0 36 97-138 78-114 (117)
152 PF08205 C2-set_2: CD80-like C 97.6 0.00035 7.6E-09 45.7 7.1 62 60-128 16-85 (89)
153 cd07698 IgC_MHC_I_alpha3 Class 97.6 0.00085 1.8E-08 44.7 8.4 62 60-128 16-84 (93)
154 cd05889 Ig1_DNAM-1_like First 97.6 0.0014 3E-08 44.5 9.4 72 60-138 2-94 (96)
155 cd05711 Ig_FcalphaRI Immunoglo 97.5 0.00055 1.2E-08 45.9 7.1 70 46-124 1-75 (94)
156 cd05902 Ig_Neurocan Immunoglob 97.5 0.0012 2.5E-08 45.9 8.6 23 99-127 73-95 (110)
157 cd05846 Ig1_MRC-OX-2_like Firs 97.5 0.0018 3.9E-08 43.3 9.0 64 61-130 4-88 (97)
158 cd07706 IgV_TCR_delta Immunogl 97.4 0.00085 1.8E-08 46.2 6.7 61 60-126 16-94 (116)
159 cd05716 Ig_pIgR Immunoglobulin 97.3 0.0016 3.4E-08 43.4 7.6 64 60-129 9-89 (98)
160 cd05766 IgC_MHC_II_beta Class 97.3 0.0027 5.8E-08 42.7 8.6 63 61-127 17-83 (94)
161 smart00407 IGc1 Immunoglobulin 97.3 0.0017 3.7E-08 41.5 7.0 62 61-126 2-70 (75)
162 cd07700 IgV_CD8_beta Immunoglo 97.1 0.0029 6.3E-08 43.1 7.3 60 61-126 9-94 (107)
163 PF07354 Sp38: Zona-pellucida- 97.1 0.00068 1.5E-08 53.8 4.4 50 71-127 11-60 (271)
164 cd05767 IgC_MHC_II_alpha Class 97.1 0.0061 1.3E-07 41.1 8.2 59 61-126 18-83 (94)
165 cd05772 IgC_SIRP Signal-regula 97.0 0.0078 1.7E-07 41.8 8.4 78 61-143 24-109 (111)
166 cd05719 Ig2_PVR_like Second im 96.9 0.0062 1.3E-07 41.1 7.2 60 61-129 18-84 (95)
167 cd07699 IgC_L Immunoglobulin C 96.9 0.0046 9.9E-08 42.0 6.5 63 61-127 20-89 (100)
168 smart00406 IGv Immunoglobulin 96.9 0.0053 1.1E-07 38.6 6.4 56 61-122 2-80 (81)
169 cd07694 Ig2_CD4 Second immunog 96.8 0.015 3.2E-07 39.0 8.2 57 59-126 15-73 (88)
170 cd07703 Ig2_Nectin-2_like Seco 96.8 0.0056 1.2E-07 41.5 6.1 59 61-128 18-83 (95)
171 cd07696 IgC_CH3 CH3 domain (th 96.8 0.0045 9.7E-08 41.9 5.6 65 60-127 16-86 (96)
172 cd05720 Ig_CD8_alpha Immunoglo 96.7 0.0097 2.1E-07 40.4 7.1 60 61-126 9-91 (104)
173 PHA02987 Ig domain OX-2-like p 96.7 0.0087 1.9E-07 45.4 6.9 74 60-140 32-124 (189)
174 cd05712 Ig_Siglec_N Immunoglob 96.7 0.0097 2.1E-07 41.3 6.8 22 99-126 81-102 (119)
175 cd04981 IgV_H Immunoglobulin ( 96.5 0.0098 2.1E-07 41.3 6.2 61 60-126 14-98 (117)
176 cd05770 IgC_beta2m Class I maj 96.4 0.022 4.9E-07 38.3 7.1 59 61-126 18-82 (93)
177 cd05768 IgC_CH4 CH4 domain (fo 96.3 0.0085 1.8E-07 40.9 4.8 26 60-86 18-45 (102)
178 cd07691 Ig_CD3_gamma_delta Imm 96.3 0.02 4.4E-07 36.6 5.8 46 61-125 9-54 (69)
179 cd05847 IgC_CH2_IgE CH2 domain 96.2 0.027 5.9E-07 37.8 6.5 65 61-129 17-88 (94)
180 PHA02633 hypothetical protein; 96.0 0.019 4E-07 36.1 4.4 37 96-138 16-53 (63)
181 PF07654 C1-set: Immunoglobuli 95.9 0.037 7.9E-07 35.8 5.9 61 61-128 11-78 (83)
182 cd05769 IgC_TCR_beta T cell re 95.8 0.046 1E-06 38.2 6.5 25 61-86 21-47 (115)
183 KOG1480|consensus 95.7 0.0038 8.3E-08 56.0 1.0 70 61-138 147-217 (909)
184 cd07697 IgC_TCR_gamma T cell r 95.6 0.019 4.2E-07 38.9 4.0 25 61-86 19-45 (96)
185 cd04986 IgC_CH2 CH2 domain (se 95.6 0.083 1.8E-06 36.1 7.0 64 60-128 21-90 (99)
186 cd07692 Ig_CD3_epsilon Immunog 95.5 0.051 1.1E-06 34.4 5.2 48 61-127 10-57 (65)
187 PHA03376 BARF1; Provisional 95.2 0.12 2.6E-06 39.7 7.2 63 59-127 27-110 (221)
188 cd04985 IgC_CH1 CH1 domain (fi 95.0 0.11 2.3E-06 35.0 6.0 24 60-84 18-43 (95)
189 KOG4597|consensus 94.9 0.045 9.7E-07 47.0 4.8 64 61-130 214-283 (560)
190 PF11465 Receptor_2B4: Natural 94.4 0.89 1.9E-05 31.6 9.3 64 68-139 37-106 (108)
191 KOG3515|consensus 94.1 0.066 1.4E-06 48.3 4.1 63 61-133 25-88 (741)
192 PHA03376 BARF1; Provisional 92.3 0.59 1.3E-05 35.9 6.3 67 61-130 142-210 (221)
193 cd05721 IgV_CTLA-4 Immunoglobu 91.8 1.2 2.7E-05 31.2 7.1 58 60-124 15-94 (115)
194 cd07704 Ig2_Nectin-3-4_like Se 91.4 0.19 4.1E-06 34.2 2.6 63 61-127 19-84 (97)
195 cd07689 Ig2_VCAM-1 Second immu 91.0 1.4 3E-05 30.2 6.4 33 47-79 4-39 (99)
196 KOG3515|consensus 89.9 1.3 2.9E-05 40.2 7.1 79 43-130 596-680 (741)
197 PF08204 V-set_CD47: CD47 immu 87.9 0.59 1.3E-05 33.5 2.9 63 60-130 29-111 (130)
198 PHA03189 UL14 tegument protein 80.7 3.8 8.2E-05 33.6 4.9 27 115-141 144-171 (348)
199 PHA03042 CD47-like protein; Pr 77.8 6.7 0.00015 31.6 5.5 57 61-129 34-95 (286)
200 PF06832 BiPBP_C: Penicillin-B 77.6 16 0.00036 23.6 10.2 56 60-132 31-86 (89)
201 PHA02982 hypothetical protein; 76.7 12 0.00025 29.4 6.3 66 59-130 40-126 (251)
202 PHA02865 MHC-like TNF binding 75.1 13 0.00028 30.8 6.6 21 60-80 216-238 (338)
203 cd05890 Ig2_Nectin-1_like Seco 64.5 5.1 0.00011 27.3 1.8 18 61-78 23-41 (98)
204 KOG3611|consensus 48.0 38 0.00083 31.1 5.1 58 61-126 572-634 (737)
205 PF05790 C2-set: Immunoglobuli 47.4 76 0.0016 20.5 9.5 13 115-127 54-67 (80)
206 KOG1026|consensus 43.0 18 0.00039 33.3 2.2 19 61-79 210-228 (774)
207 PHA03052 Hypothetical protein; 38.8 71 0.0015 20.3 3.8 26 60-86 14-42 (69)
208 PHA02914 Immunoglobulin-like d 34.3 1E+02 0.0022 26.6 5.1 28 115-142 92-119 (500)
209 smart00082 LRRCT Leucine rich 32.0 9.5 0.0002 21.7 -0.9 14 7-20 1-14 (51)
210 PHA03282 envelope glycoprotein 28.7 1.4E+02 0.003 26.2 5.1 26 92-123 118-143 (540)
211 smart00089 PKD Repeats in poly 22.3 1.9E+02 0.0042 17.5 8.8 51 61-130 17-70 (79)
No 1
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.82 E-value=2.5e-19 Score=121.09 Aligned_cols=87 Identities=21% Similarity=0.302 Sum_probs=67.9
Q ss_pred CCEEEEcCCCCC---c---cCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEE
Q psy5697 46 YPFRIKSAPGGN---R---TRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVY 119 (145)
Q Consensus 46 ~P~~i~~p~~~~---~---~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y 119 (145)
.|+|+++|.+.. . ..+.|.|.|.|+|.|+|+|+ +||..+......+....+|+|.|.++.. ..|+|.|
T Consensus 1 ~P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~-~~g~~l~~~~~~~~~~~~g~L~I~~~~~-----~~D~G~Y 74 (94)
T cd05850 1 GPVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWK-MNGTEIKFAPESRYTLVAGNLVINNPQK-----ARDAGSY 74 (94)
T ss_pred CCeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEE-ECCEECccCCCceEEEECCeEEEccCCc-----cCcCEEE
Confidence 378888888721 1 12899999999999999997 5888876444344556689999976432 1289999
Q ss_pred EEEEEcCCCceEEEEEEEE
Q psy5697 120 RCRASNEAGVILSRFVHVK 138 (145)
Q Consensus 120 ~C~A~N~~G~~~s~~v~v~ 138 (145)
+|.|+|.+|++.|+.+.|+
T Consensus 75 ~C~A~N~~G~~~s~~a~l~ 93 (94)
T cd05850 75 QCLAINRCGTVVSREANLR 93 (94)
T ss_pred EEEEEcCcCcEEEEEEEEe
Confidence 9999999999999988875
No 2
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.82 E-value=2.2e-19 Score=121.44 Aligned_cols=87 Identities=24% Similarity=0.288 Sum_probs=67.9
Q ss_pred CCEEEEcCCCC-C---ccC--eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEE
Q psy5697 46 YPFRIKSAPGG-N---RTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVY 119 (145)
Q Consensus 46 ~P~~i~~p~~~-~---~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y 119 (145)
.|+|+++|.+. . ..| +.|.|.|.|+|.|+|+|+ +||..+......+....+|+|.|.++.. ..|+|.|
T Consensus 1 ~P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~-k~g~~l~~~~~~~~~~~~g~L~i~~~~~-----~~D~G~Y 74 (94)
T cd05848 1 GPVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWL-RNGTEIDTESDYRYSLIDGNLIISNPSE-----VKDSGRY 74 (94)
T ss_pred CCeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEE-ECCeECccCCCceEEeeCCeEEEccCCc-----cCcCEEE
Confidence 37888888872 1 123 899999999999999998 5888886433334556789999977532 1289999
Q ss_pred EEEEEcCCCceEEEEEEEE
Q psy5697 120 RCRASNEAGVILSRFVHVK 138 (145)
Q Consensus 120 ~C~A~N~~G~~~s~~v~v~ 138 (145)
+|.|+|.+|++.|+.++++
T Consensus 75 ~C~A~N~~G~~~S~~~~l~ 93 (94)
T cd05848 75 QCLATNSIGSILSREALLQ 93 (94)
T ss_pred EEEEEcCCCeEEeccEEEe
Confidence 9999999999999888875
No 3
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.79 E-value=1.5e-18 Score=117.43 Aligned_cols=86 Identities=20% Similarity=0.143 Sum_probs=66.2
Q ss_pred CCEEEEcCCCC---C-c-cC-eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEE
Q psy5697 46 YPFRIKSAPGG---N-R-TR-GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVY 119 (145)
Q Consensus 46 ~P~~i~~p~~~---~-~-~g-~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y 119 (145)
+|+|+++|.+. . . .+ +.|.|.|.|+|.|+|+|++ |+..+.... .+....+|+|.|.++.. ..|+|.|
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k-~~~~i~~~~-~~~~~~~g~L~I~~~~~-----~~D~G~Y 73 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRK-NNLDIDLTN-DRYSMVGGNLVINNPDK-----YKDAGRY 73 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEE-CCEEccCCC-CeEEEECCEEEECcCCc-----CCCCEEE
Confidence 48888888872 1 1 12 8999999999999999985 777775322 24456789999976532 1289999
Q ss_pred EEEEEcCCCceEEEEEEEE
Q psy5697 120 RCRASNEAGVILSRFVHVK 138 (145)
Q Consensus 120 ~C~A~N~~G~~~s~~v~v~ 138 (145)
+|.|+|.+|++.|+.++|.
T Consensus 74 ~C~A~N~~G~~~s~~a~l~ 92 (93)
T cd05849 74 VCIVSNIYGKVRSREATLS 92 (93)
T ss_pred EEEEEeCcceEEEccEEEe
Confidence 9999999999999888774
No 4
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.76 E-value=5.1e-18 Score=110.90 Aligned_cols=75 Identities=21% Similarity=0.357 Sum_probs=57.8
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccC--ceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKD--LRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK 138 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~--~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~ 138 (145)
+.|.|.|.|+|+|+|+|++ ||.++...+. ......+|+|.|..+..++ .+.|+|.|+|.|+|.+|.+.|+.++|+
T Consensus 1 ~~l~C~a~G~P~P~i~W~k-~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~--~~~d~G~Y~C~A~N~~G~~~s~~~~~~ 77 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTR-NGTHFDIDKDPKVTMKPNTGTLVINIMNGEK--AEAYEGVYQCTARNERGAAVSNNIVIR 77 (77)
T ss_pred CEEEeeCcccCCCeEEEEE-CCeECCCcCCCCEEEeCCCceEEEeccccCC--CCCCCEEEEEEEEcCCCeEEeeEEEEC
Confidence 4799999999999999985 7887643222 2233457899998776542 234799999999999999999998874
No 5
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.75 E-value=1.1e-17 Score=111.85 Aligned_cols=83 Identities=14% Similarity=-0.007 Sum_probs=62.9
Q ss_pred CCEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697 46 YPFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCR 122 (145)
Q Consensus 46 ~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~ 122 (145)
+|.|...+.+ .... .+.|+|.+.|+|.|.|+|++ ++.++... .+....+++|.|.++..+ |+|.|+|.
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k-~~~~~~~~--~~~~~~~~~L~I~~v~~~------D~G~Y~C~ 71 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRK-ILEPMPAT--AEISMSGAVLKIFNIQPE------DEGTYECE 71 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEE-CCcCCCCC--CEEecCCCEEEECcCChh------hCEEEEEE
Confidence 5778888887 2223 39999999999999999985 66665432 234445668999988765 89999999
Q ss_pred EEcCCCce-EEEEEEE
Q psy5697 123 ASNEAGVI-LSRFVHV 137 (145)
Q Consensus 123 A~N~~G~~-~s~~v~v 137 (145)
|+|.+|+. .+..+.|
T Consensus 72 A~N~~G~~~~~~~l~V 87 (88)
T cd05851 72 AENIKGKDKHQARVYV 87 (88)
T ss_pred EEcCCCceEEEEEEEE
Confidence 99999997 4445554
No 6
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.75 E-value=1.5e-17 Score=108.65 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=56.5
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeec--ccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAY--VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK 138 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~--~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~ 138 (145)
+.|+|.|.|+|.|+|+|++ ||..+.. ..+......+|+|.|..+... ..+.|+|.|+|.|+|.+|++.|+.++|+
T Consensus 1 ~~l~C~~~G~P~P~v~W~k-~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~--~~~~d~G~Y~C~A~N~~G~~~s~~~~~~ 77 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTR-NGKFFNVAKDPRVSMRRRSGTLVIDFSGGG--RPEDYEGEYQCFARNNLGTALSNKILLQ 77 (77)
T ss_pred CEEEEeccccCCCEEEEEE-CCEEccCcCCCcEEEeCCCceEEEeccCCC--CCCCCCEEEEEEEEeccceEEEEEEEEC
Confidence 4799999999999999985 8877642 222223346789999865421 1122699999999999999999999874
No 7
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.74 E-value=2.4e-17 Score=110.34 Aligned_cols=91 Identities=20% Similarity=0.222 Sum_probs=65.2
Q ss_pred CCEEEEcCCC-CCccC--eEEEeeEeccCCCEEEEEccCCeEeec----ccCceEEeeCCcEEEcCCCCCCCCCCCCCeE
Q psy5697 46 YPFRIKSAPG-GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAY----VKDLRIALSNGSLMFPPFPETGFRPDVHSTV 118 (145)
Q Consensus 46 ~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~----~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~ 118 (145)
+|.|++.|.+ ....| +.|.|.+.|+|.|.|+|++ ||..+.. ....+....+|++.+..+..... ...|+|.
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k-~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~D~G~ 78 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLK-NGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRK-GRSDEGV 78 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEE-CCEECccccCCCCcceEEecCCcEEEEEeeccCC-CcCcCEE
Confidence 5888888887 23333 9999999999999999985 7887754 11223455677765544322110 2338999
Q ss_pred EEEEEEcCCCceEEEEEEEE
Q psy5697 119 YRCRASNEAGVILSRFVHVK 138 (145)
Q Consensus 119 Y~C~A~N~~G~~~s~~v~v~ 138 (145)
|+|.|+|.+|+..++.+.|.
T Consensus 79 Y~C~a~N~~G~~~s~~~~l~ 98 (100)
T cd07693 79 YVCVAHNSLGEAVSRNASLE 98 (100)
T ss_pred EEEEEEccccceecceEEEE
Confidence 99999999999888777765
No 8
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.74 E-value=3e-17 Score=109.88 Aligned_cols=83 Identities=25% Similarity=0.308 Sum_probs=63.6
Q ss_pred CEEEEcCCCC---C-cc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697 47 PFRIKSAPGG---N-RT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYR 120 (145)
Q Consensus 47 P~~i~~p~~~---~-~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~ 120 (145)
|+|+.+|.+. . .. .+.|.|.+.|+|+|+|+|+ +||+.+......+....+|+|.|.++... .|+|.|+
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~-k~~~~l~~~~~~~~~~~~~~L~i~~~~~~-----~d~G~Y~ 75 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWL-MNGTEIDDEPDSRYSLVGGNLVISNPSKA-----KDAGRYQ 75 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEE-ECCEECCCCCCCCEEEECCEEEEecCCcc-----CCCEEEE
Confidence 7888888872 1 12 2899999999999999997 58888743333445567889999765421 2899999
Q ss_pred EEEEcCCCceEEEEE
Q psy5697 121 CRASNEAGVILSRFV 135 (145)
Q Consensus 121 C~A~N~~G~~~s~~v 135 (145)
|+|+|.+|++.|+.+
T Consensus 76 C~a~N~~G~~~S~~~ 90 (91)
T cd04967 76 CLASNIVGTVLSREA 90 (91)
T ss_pred EEEEcCCCEEEeccc
Confidence 999999999988754
No 9
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.73 E-value=3.6e-17 Score=105.71 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=56.6
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeeccc-CceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVK-DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK 138 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~-~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~ 138 (145)
++|.|.+.|+|.|+|+|++ |+.++...+ .......+|+|.|.++..+ |+|.|+|.|+|.+|...+..+.+.
T Consensus 1 a~l~C~~~G~P~p~v~W~k-~~~~~~~~~~~~~~~~~~g~L~i~~~~~~------D~G~Y~C~a~N~~G~~~s~~a~l~ 72 (74)
T cd05738 1 ATMLCAASGNPDPEITWFK-DFLPVDTTSNGRIKQLRSGALQIENSEES------DQGKYECVATNSAGTRYSAPANLY 72 (74)
T ss_pred CEEEEEEeEecCCEEEEEE-CCEECccCCCCCEEEcCCcEEEECCCChh------hCEEEEEEEECCCCceEcccEEEE
Confidence 4799999999999999985 777775322 2334566889999887654 899999999999999877776665
No 10
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.72 E-value=2.3e-17 Score=107.49 Aligned_cols=75 Identities=23% Similarity=0.366 Sum_probs=56.6
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeeccc--CceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVK--DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK 138 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~--~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~ 138 (145)
+.|.|.|.|+|+|+|+|+ +||.++.... .......+|+|.|..+... ....|+|.|+|.|+|.+|+..|+.++|+
T Consensus 1 i~l~C~~~G~P~P~v~W~-k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~--~~~~d~G~Y~C~A~N~~G~~~s~~~~l~ 77 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWT-RNGTHFDPEKDPRVTMKPDSGTLVIDNMNGG--RAEDYEGEYQCYASNELGTAISNEIHLR 77 (77)
T ss_pred CEEEeeCcccCCCeEEEE-ECCeECCCCCCCCEEEeCCCCEEEEeccCCC--CCcCCCEEEEEEEEcCCCcEEccccEEC
Confidence 479999999999999997 5888775322 2223345789999876431 1123799999999999999999888773
No 11
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.72 E-value=4.3e-17 Score=106.24 Aligned_cols=69 Identities=22% Similarity=0.305 Sum_probs=52.1
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceEEe--eCC--cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEE-EEE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIAL--SNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFV 135 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~--~~G--sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s-~~v 135 (145)
+.|+|.+.|.|.|+|+|+| ||+.+........+. .+| +|.|.++..+ |+|.|+|.|+|.+|++.+ ..+
T Consensus 1 v~l~C~v~G~P~P~i~W~k-~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~------D~G~Y~C~A~N~~G~~~~~a~L 73 (75)
T cd05892 1 VKLECQISAIPPPKIFWKR-NNEMVQYNTDRISLYQDNSGRVTLLIKNVNKK------DAGWYTVSAVNEAGVATCHARL 73 (75)
T ss_pred CEEEEEEEecCCCeEEEEE-CCEECcCCCCeEEEEEcCCCcEEEEECCCChh------hCEEEEEEEEcCcCeEEEEEEE
Confidence 4799999999999999985 788876432222332 234 7999988765 899999999999999843 344
Q ss_pred E
Q psy5697 136 H 136 (145)
Q Consensus 136 ~ 136 (145)
.
T Consensus 74 ~ 74 (75)
T cd05892 74 D 74 (75)
T ss_pred e
Confidence 3
No 12
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.72 E-value=4e-17 Score=106.29 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=49.3
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeC--C--cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSN--G--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 131 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~--G--sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 131 (145)
+.|+|.+.|.|.|+|+|+| |+.++...........+ | +|.|..+..+ |+|.|+|.|+|.+|++.
T Consensus 1 v~l~C~v~G~P~P~v~W~k-~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~A~N~~G~~~ 68 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKK-ENESLTHNTDRVSMHQDNCGYICLLIQGATKE------DAGWYTVSAKNEAGIVS 68 (75)
T ss_pred CEEEEEEeEecCCEEEEEE-CCEECCCCCCeEEEEEcCCCEEEEEECCCCHH------HCEEEEEEEEcCCCEEE
Confidence 4799999999999999985 77777543322233333 3 6999888765 89999999999999983
No 13
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.72 E-value=6.8e-17 Score=108.83 Aligned_cols=89 Identities=20% Similarity=0.358 Sum_probs=66.0
Q ss_pred EEEEcCCCC-C--ccCeEEEeeEeccCCCEEEEEccCCeEeecccC-ceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697 48 FRIKSAPGG-N--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKD-LRIALSNGSLMFPPFPETGFRPDVHSTVYRCRA 123 (145)
Q Consensus 48 ~~i~~p~~~-~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~-~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A 123 (145)
+|+++|.+. . +..+.|.|.+.|.|+|.|+|+ +||..+..... ......+|+|.|..+..... ...|+|.|+|.|
T Consensus 1 ~f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~-k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~-~~~D~G~Y~C~a 78 (95)
T cd05722 1 WFLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWK-KDGVLLNLVSDERRQQLPNGSLLITSVVHSKH-NKPDEGFYQCVA 78 (95)
T ss_pred CcEECCCCeEEcCCCCEEEeeecccCCCCEEEEE-ECCeECccccCcceEEccCCeEEEeeeeccCC-CCCcCEEEEEEE
Confidence 466777762 2 233999999999999999997 48888764332 23456788888876532211 234899999999
Q ss_pred EcC-CCceEEEEEEEE
Q psy5697 124 SNE-AGVILSRFVHVK 138 (145)
Q Consensus 124 ~N~-~G~~~s~~v~v~ 138 (145)
+|. +|.+.|+.++|.
T Consensus 79 ~N~~~G~~~s~~~~l~ 94 (95)
T cd05722 79 QNDSLGSIVSRTARLT 94 (95)
T ss_pred ECCccCcEEEeeeEEe
Confidence 999 999999988875
No 14
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.72 E-value=1.2e-16 Score=108.94 Aligned_cols=88 Identities=16% Similarity=0.147 Sum_probs=65.9
Q ss_pred CEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEe--eCCcEEEcCCCCCCCCCCCCCeEEEE
Q psy5697 47 PFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIAL--SNGSLMFPPFPETGFRPDVHSTVYRC 121 (145)
Q Consensus 47 P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~--~~GsL~i~~~~~~~~~~~~d~G~Y~C 121 (145)
|.|++.|.+ .... .+.|.|.+.|.|+|+|+|+ +||.++....+..... ...+|.|..+..+ |+|.|.|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~-kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~------D~G~Ytc 73 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWM-KFRKQIQEGEGIKIENTENSSKLTITEGQQE------HCGCYTL 73 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEE-ECCEEecCCCcEEEEecCCeeEEEECCCChh------hCEEEEE
Confidence 678888877 2333 3999999999999999997 5888886443332222 2347999888665 8999999
Q ss_pred EEEcCCCce-EEEEEEEEecc
Q psy5697 122 RASNEAGVI-LSRFVHVKADS 141 (145)
Q Consensus 122 ~A~N~~G~~-~s~~v~v~~~~ 141 (145)
.|+|++|+. .+..+.|...+
T Consensus 74 ~a~N~~G~~~~~~~l~V~~~P 94 (98)
T cd05762 74 EVENKLGSRQAQVNLTVVDKP 94 (98)
T ss_pred EEEcCCCceeEEEEEEEecCC
Confidence 999999998 55567776443
No 15
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.71 E-value=8.2e-17 Score=103.22 Aligned_cols=62 Identities=15% Similarity=0.205 Sum_probs=50.7
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~ 130 (145)
+.|+|.+.|.|+|+|+|++ ||..+.... ...+..+++|.|.++..+ |+|.|+|.|+|.+|++
T Consensus 2 v~l~C~~~G~P~p~v~W~k-~g~~~~~~~-~~~~~~~~~l~i~~v~~~------D~G~Y~C~A~N~~G~~ 63 (71)
T cd05723 2 VIFECEVTGKPTPTVKWVK-NGDMVIPSD-YFKIVKEHNLQVLGLVKS------DEGFYQCIAENDVGNV 63 (71)
T ss_pred EEEEEEEEEeCCCEEEEEE-CCeECCCCC-CEEEEecCCEEEEcCCcc------cCEEEEEEEEcCCCEE
Confidence 6899999999999999985 777664332 335556789999877655 8999999999999997
No 16
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.71 E-value=5.7e-17 Score=105.00 Aligned_cols=68 Identities=13% Similarity=0.188 Sum_probs=54.5
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceE-EEEEE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVH 136 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~-s~~v~ 136 (145)
+.|+|.+.|+|.|+|+|++ |+..+.... ...+..+|+|.|.++..+ |+|.|+|.|+|.+|++. +..+.
T Consensus 4 ~~l~C~~~g~P~p~v~W~k-~~~~l~~~~-r~~~~~~g~L~I~~v~~~------D~G~Y~C~A~N~~G~~~~~~~l~ 72 (73)
T cd05852 4 VIIECKPKAAPKPKFSWSK-GTELLVNNS-RISIWDDGSLEILNITKL------DEGSYTCFAENNRGKANSTGVLS 72 (73)
T ss_pred EEEEEecceeCCCEEEEEe-CCEecccCC-CEEEcCCCEEEECcCChh------HCEEEEEEEECCCCceeEEEEEE
Confidence 8999999999999999985 777664332 335567899999988765 89999999999999984 33443
No 17
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.71 E-value=1.3e-16 Score=103.36 Aligned_cols=64 Identities=23% Similarity=0.400 Sum_probs=52.9
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeeccc-CceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVK-DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 131 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~-~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 131 (145)
+.|.|.+.|.|.|+|+|+ +||.++.... ..+....+|+|.|.++..+ |+|.|+|.|+|.+|++.
T Consensus 4 v~l~C~~~G~P~p~i~W~-k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~ 68 (76)
T cd05867 4 ARLDCQVEGIPTPNITWS-INGAPIEGTDPDPRRHVSSGALILTDVQPS------DTAVYQCEARNRHGNLL 68 (76)
T ss_pred EEEEEEeeEeCCCeEEEE-ECCEECCCCCCCceEEeeCCEEEECCCChh------hCEEEEEEEECCCCeEE
Confidence 799999999999999998 5888876432 2245567889999988655 89999999999999983
No 18
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.71 E-value=1.1e-16 Score=104.13 Aligned_cols=70 Identities=27% Similarity=0.463 Sum_probs=54.0
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCc-eEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDL-RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHV 137 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~-~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v 137 (145)
+.|.|.|.|+|+|+|+|++ ||+++...+.. .....++.|.|.++..+ |+|.|+|.|+|.+|.+ .+..+.|
T Consensus 4 ~~l~C~a~G~P~P~i~W~k-~g~~i~~~~~~~~~~~~~~~l~i~~v~~~------D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 4 GTLICRANGNPKPSISWLT-NGVPIEIAPTDPSRKVDGDTIIFSKVQER------SSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred EEEEEEeeEeCCCeEEEEE-CCEEccccCCCceEEecCCEEEECCCCHh------hCEEEEEEEEcCCCEEEEEEEEEe
Confidence 7899999999999999985 88888643322 23344568888877654 8999999999999998 4445554
No 19
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.70 E-value=2.6e-16 Score=104.46 Aligned_cols=83 Identities=16% Similarity=0.103 Sum_probs=60.8
Q ss_pred CCEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697 46 YPFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCR 122 (145)
Q Consensus 46 ~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~ 122 (145)
||.++..|.+ .... .+.|.|.+.|+|.|+|+|++ ++..+... ......+++|.|.++..+ |+|.|+|.
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k-~~~~~~~~--~~~~~~~~~L~i~~v~~~------D~G~Y~C~ 71 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRK-VDGSMPSS--AEISMSGAVLKIPNIQFE------DEGTYECE 71 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEE-CCCcCCCc--cEEEEeCCEEEECCCCcc------cCEEEEEE
Confidence 4667777776 2223 39999999999999999986 44433221 223356789999988765 89999999
Q ss_pred EEcCCCce-EEEEEEE
Q psy5697 123 ASNEAGVI-LSRFVHV 137 (145)
Q Consensus 123 A~N~~G~~-~s~~v~v 137 (145)
|+|.+|.. .+..+.|
T Consensus 72 a~N~~G~~~~~~~l~V 87 (88)
T cd04968 72 AENIKGKDTHQGRIYV 87 (88)
T ss_pred EEECCCcEEEEEEEEE
Confidence 99999997 4445544
No 20
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.70 E-value=1.2e-16 Score=104.25 Aligned_cols=72 Identities=25% Similarity=0.325 Sum_probs=55.1
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeec------ccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAY------VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF 134 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~------~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~ 134 (145)
++|.|.|.|+|.|.|+|++.++..... ..+...+..+|+|.|.++..+ |+|.|+|.|+|.+|...++.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~s~~ 74 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEE------DSGYYLCKVSNDVGADASKS 74 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcc------cCEEEEEEEEeCCCCCCceE
Confidence 479999999999999998755432110 112233457899999887655 89999999999999998888
Q ss_pred EEEE
Q psy5697 135 VHVK 138 (145)
Q Consensus 135 v~v~ 138 (145)
+.+.
T Consensus 75 ~~l~ 78 (79)
T cd05734 75 MVLT 78 (79)
T ss_pred EEEe
Confidence 7765
No 21
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.70 E-value=8.7e-17 Score=103.70 Aligned_cols=62 Identities=19% Similarity=0.308 Sum_probs=52.1
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~ 130 (145)
+.|.|.+.|+|.|+|+|++ ||..+.... ...+..+|+|.|.++..+ |+|.|+|.|+|.+|++
T Consensus 5 v~l~C~~~g~P~p~i~W~k-~g~~~~~~~-~~~~~~~~~L~I~~v~~~------D~G~Y~C~A~N~~G~~ 66 (74)
T cd05745 5 VDFLCEAQGYPQPVIAWTK-GGSQLSVDR-RHLVLSSGTLRISRVALH------DQGQYECQAVNIVGSQ 66 (74)
T ss_pred EEEEeECCEecCCEEEEEE-CCEECCCCC-CeEEccCCeEEEeeCCHH------hCEEEEEEEEeCCCce
Confidence 8999999999999999985 788775432 234567889999988765 8999999999999997
No 22
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.69 E-value=1.1e-16 Score=105.87 Aligned_cols=76 Identities=18% Similarity=0.153 Sum_probs=56.8
Q ss_pred EEEcCCC-CC--ccCeEEEeeEeccCCC-EEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697 49 RIKSAPG-GN--RTRGLELTRQTRYEPS-QLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRAS 124 (145)
Q Consensus 49 ~i~~p~~-~~--~~g~~L~C~a~G~P~P-~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~ 124 (145)
|+++|++ .+ +..+.|.|.|.|+|.| +|+|+ +||.++... .....++|.|..+. |+|.|+|.|+
T Consensus 1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~-k~g~~l~~~----~~~~~s~L~i~~~~--------d~g~Y~C~A~ 67 (81)
T cd05749 1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWW-QGGSPLGDP----PAPSPSVLNVPGLN--------ETSKFSCEAH 67 (81)
T ss_pred CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEE-ECCEECCCC----CCCCCCEEEEcccc--------CCeEEEEEEE
Confidence 3456666 22 2339999999999999 79997 588887531 11234678886542 7899999999
Q ss_pred cCCCceEEEEEEE
Q psy5697 125 NEAGVILSRFVHV 137 (145)
Q Consensus 125 N~~G~~~s~~v~v 137 (145)
|.+|...++.++|
T Consensus 68 N~~G~~~s~~a~~ 80 (81)
T cd05749 68 NAKGVTTSRTGTV 80 (81)
T ss_pred eccCcEEeeeEEe
Confidence 9999999888776
No 23
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.69 E-value=2.3e-16 Score=102.73 Aligned_cols=73 Identities=14% Similarity=0.073 Sum_probs=56.2
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceE-EeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceE-EEEEEEE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRI-ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVK 138 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~-~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~-s~~v~v~ 138 (145)
++|.|.+.|.|.|+|+|+| ||.++........ ...+++|.|.++.++ |+|.|+|.|+|.+|+.. ++.++|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k-~g~~l~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~s~~~~~l~ 73 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFR-DGTPLSDGQGNYSVSSKERTLTLRSAGPD------DSGLYYCCAHNAFGSVCSSQNFTLS 73 (77)
T ss_pred CEEEEEeeecCCCcEEEEE-CCEECCCCCccEEEeCCCCEEEEeeCCcc------cCEEEEEEEEeCCCeEeeCceEEEE
Confidence 4799999999999999985 8888754332222 233568999888765 89999999999999984 5677776
Q ss_pred ec
Q psy5697 139 AD 140 (145)
Q Consensus 139 ~~ 140 (145)
..
T Consensus 74 v~ 75 (77)
T cd05760 74 II 75 (77)
T ss_pred Ee
Confidence 43
No 24
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.68 E-value=4.2e-16 Score=101.17 Aligned_cols=65 Identities=26% Similarity=0.359 Sum_probs=50.0
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeC--C--cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSN--G--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 132 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~--G--sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 132 (145)
+.|+|.+.|+|.|+|+|++ ||..+........+..+ | +|.|..+..+ |+|.|+|.|+|.+|+..+
T Consensus 1 v~L~C~v~G~P~P~v~W~k-~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~~ 69 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKK-NNEMLTYNTDRISLYQDNCGRICLLIQNANKE------DAGWYTVSAVNEAGVVSC 69 (75)
T ss_pred CEEEEEEeecCCCeEEEEE-CCEECCCCCCcEEEEEcCCCeEEEEECCCCcc------cCEEEEEEEEcCCCcEEE
Confidence 4799999999999999985 78887643322233322 3 6999888665 899999999999999843
No 25
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.67 E-value=2.8e-16 Score=100.74 Aligned_cols=62 Identities=15% Similarity=0.153 Sum_probs=49.1
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~ 130 (145)
+.|+|.+.|+|.|.|+|++ ++..+... .......+++|.|.++..+ |+|.|+|.|+|.+|..
T Consensus 1 ~~L~C~~~G~P~P~v~W~k-~~~~~~~~-~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~ 62 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDR-IDGPLSPN-RTKKLNNNKTLQLDNVLES------DDGEYVCTAENSEGSA 62 (71)
T ss_pred CEEEEEeeEecCCeEEEEE-CCcCCCCC-ceeEEcCCCEEEEcccCHH------hCEEEEEEEEcCCCeE
Confidence 4799999999999999986 55555332 1233456779999988755 8999999999999997
No 26
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.67 E-value=4e-16 Score=103.31 Aligned_cols=73 Identities=21% Similarity=0.301 Sum_probs=57.0
Q ss_pred EEEcCCC-CCc--cCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEc
Q psy5697 49 RIKSAPG-GNR--TRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASN 125 (145)
Q Consensus 49 ~i~~p~~-~~~--~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N 125 (145)
|++.|.+ ... ..+.|.|.+.|+|.|.++|+ +||.++.... +....++.|.|.++..+ |+|.|+|.|.|
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~-k~g~~~~~~~--~~~~~~~~L~i~~~~~~------D~G~Y~C~a~N 72 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWL-KNGQPLASEN--RIEVEAGDLRITKLSLS------DSGMYQCVAEN 72 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEE-ECCEECCCCC--eEEEeCCEEEEeeCCHH------HCEEEEEEEEC
Confidence 4556665 222 33999999999999999997 4888775432 34457889999988655 89999999999
Q ss_pred CCCce
Q psy5697 126 EAGVI 130 (145)
Q Consensus 126 ~~G~~ 130 (145)
.+|.+
T Consensus 73 ~~G~~ 77 (85)
T cd05728 73 KHGTI 77 (85)
T ss_pred CCCeE
Confidence 99997
No 27
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.67 E-value=6.9e-16 Score=103.40 Aligned_cols=78 Identities=8% Similarity=0.013 Sum_probs=59.7
Q ss_pred CCCEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEee---CCcEEEcCCCCCCCCCCCCCeE
Q psy5697 45 HYPFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALS---NGSLMFPPFPETGFRPDVHSTV 118 (145)
Q Consensus 45 ~~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~---~GsL~i~~~~~~~~~~~~d~G~ 118 (145)
.||.|++.|.+ .... .+.|+|.+.|+|.|++.|++ +|..+....+. .+.. .++|.|.++..+ |+|.
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k-~g~~l~~~~~~-~~~~~~~~~~L~i~~~~~~------D~G~ 73 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMR-EGQIIVSSQRH-QITSTEYKSTFEISKVQMS------DEGN 73 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEE-CCEECCCCCcE-EEEEcCCeeEEEECCCCcc------cCEe
Confidence 47888888877 2333 38999999999999999985 77776543322 2222 358999887655 8999
Q ss_pred EEEEEEcCCCce
Q psy5697 119 YRCRASNEAGVI 130 (145)
Q Consensus 119 Y~C~A~N~~G~~ 130 (145)
|+|.|+|.+|+.
T Consensus 74 Y~C~a~N~~G~~ 85 (92)
T cd05747 74 YTVVVENSEGKQ 85 (92)
T ss_pred EEEEEEcCCCCE
Confidence 999999999986
No 28
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.66 E-value=4.9e-16 Score=99.00 Aligned_cols=62 Identities=13% Similarity=0.100 Sum_probs=51.2
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~ 130 (145)
+.|.|.+.|.|.|.|+|++ ||..+.... ...+..+|+|.|.++..+ |+|.|+|.|+|.+|..
T Consensus 1 v~L~C~~~g~P~p~i~W~k-~g~~~~~~~-~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~ 62 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNK-DGVQVTESG-KFHISPEGYLAIRDVGVA------DQGRYECVARNTIGYA 62 (69)
T ss_pred CEeEecceEeCCCEEEEEE-CCEECCCCC-CEEECCCCEEEECcCChh------hCEEEEEEEECCCCcE
Confidence 4799999999999999984 888775432 334556889999988755 8999999999999997
No 29
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.66 E-value=7.1e-16 Score=99.47 Aligned_cols=70 Identities=19% Similarity=0.272 Sum_probs=49.4
Q ss_pred eEEEeeEeccCCCEEEEEccCCeE-eecccCce-EE-eeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTV-IAYVKDLR-IA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVH 136 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~-i~~~~~~~-~~-~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~ 136 (145)
+.|.|.+.|+|.|+|+|++ +|.. +......+ .+ ..++.|.|.++..+ |+|.|+|.|+|.+|++ .+..+.
T Consensus 1 a~l~C~~~G~P~P~v~W~k-~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~A~N~~G~~~~~~~l~ 73 (75)
T cd05763 1 ARLECAATGHPTPQIAWQK-DGGTDFPAARERRMHVMPEDDVFFIVDVKIE------DTGVYSCTAQNTAGSISANATLT 73 (75)
T ss_pred CEeEeecccccCCEEEEEe-CCCccCCcccccceEEecCCCEEEEeeCCcc------cCEEEEEEEEcCCCEEEeeEEEE
Confidence 4799999999999999986 5542 22111111 22 34568999888665 8999999999999997 333444
Q ss_pred E
Q psy5697 137 V 137 (145)
Q Consensus 137 v 137 (145)
|
T Consensus 74 V 74 (75)
T cd05763 74 V 74 (75)
T ss_pred E
Confidence 3
No 30
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.65 E-value=2.6e-15 Score=102.18 Aligned_cols=72 Identities=17% Similarity=0.174 Sum_probs=51.4
Q ss_pred CeEEEeeEeccCC-CEEEEEccCCeEeecccCceEEeeC----CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEE
Q psy5697 60 RGLELTRQTRYEP-SQLGWRFSNNTVIAYVKDLRIALSN----GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF 134 (145)
Q Consensus 60 g~~L~C~a~G~P~-P~i~W~~~dg~~i~~~~~~~~~~~~----GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~ 134 (145)
.+.|.|.+.|+|. |+|+|++.||..+........+..+ ++|.|..+..+ |+|.|+|.|+|.+|....+.
T Consensus 17 ~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~------D~G~YtC~A~N~~~g~~~~s 90 (96)
T cd05865 17 SKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANID------DAGIYKCVVSNEDEGESEAT 90 (96)
T ss_pred eEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChh------hCEEEEEEEEcCCCCcEEEE
Confidence 4999999999995 7999986688766432222222222 58999988766 89999999999984433444
Q ss_pred EEE
Q psy5697 135 VHV 137 (145)
Q Consensus 135 v~v 137 (145)
+.+
T Consensus 91 ~~l 93 (96)
T cd05865 91 VNV 93 (96)
T ss_pred EEE
Confidence 444
No 31
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.65 E-value=1.1e-15 Score=98.29 Aligned_cols=70 Identities=29% Similarity=0.474 Sum_probs=54.6
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCc-eEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceE-EEEEEE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDL-RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHV 137 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~-~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~-s~~v~v 137 (145)
+.|.|.+.|+|.|+|+|+ +||..+...... .....+++|.|.++..+ |+|.|+|.|+|.+|++. +..+.|
T Consensus 4 ~~l~C~~~g~P~p~i~W~-~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 4 GRLDCEAEGIPQPTITWR-LNGVPIEELPPDPRRRVDGGTLILSNVQPN------DTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred EEEEEEceeeCCCEEEEE-ECCEECCCCCCcceEEccCCEEEECCCChh------hCEEEEEEEEccCCeEEEeEEEEE
Confidence 789999999999999997 488877643322 34556789999988655 89999999999999983 334443
No 32
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.65 E-value=2.3e-15 Score=101.31 Aligned_cols=70 Identities=19% Similarity=0.270 Sum_probs=55.8
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKA 139 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~~ 139 (145)
+.|.|.|.|. .|.|+|+ +||..+... +......+++|.|.++..+ |+|.|+|.|.|.+|...|..+.|..
T Consensus 21 v~l~C~a~g~-~p~i~W~-kng~~l~~~-~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 21 VTLTCEAEGQ-ATYIWWV-NNGSLLVPP-RLQLSNDNRTLTFNNVTRS------DTGHYQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred EEEEEEeCCC-CCEEEEE-ECCEECCCC-CEEEeCCCCEEEECcCChh------hCEEEEEEEEcCCCCEEeeeEEEEe
Confidence 9999999999 9999997 477776432 2222234569999988765 8999999999999999998887753
No 33
>KOG3513|consensus
Probab=99.65 E-value=8.2e-16 Score=138.30 Aligned_cols=116 Identities=19% Similarity=0.257 Sum_probs=91.4
Q ss_pred eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCCC-C--ccCeEEEeeEeccCCCEEEEEccCCeEee
Q psy5697 10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPGG-N--RTRGLELTRQTRYEPSQLGWRFSNNTVIA 86 (145)
Q Consensus 10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~~-~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~ 86 (145)
..|++.|=|...+..... ..+.......+|.|++.+.+. . .+.++|+|.|.|.|.|+|+|+ +||.++.
T Consensus 303 ~~D~G~Y~C~AeN~~G~~--------~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~Wl-kNg~pl~ 373 (1051)
T KOG3513|consen 303 YEDAGEYECIAENSRGSA--------THSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWL-KNGEPLE 373 (1051)
T ss_pred cCCCeEEEEEEecccccc--------eeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEe-eCCeecC
Confidence 568888888886655433 233344557789999999983 2 334999999999999999997 6999987
Q ss_pred ccc-CceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEEec
Q psy5697 87 YVK-DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVKAD 140 (145)
Q Consensus 87 ~~~-~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~~~ 140 (145)
... ..+..+.+|+|.|.++..+ |+|+|||.|+|.+|.+ .++.+.|.+.
T Consensus 374 ~~~r~~~~~i~~g~L~is~v~~~------dsg~YQC~A~Nk~G~i~anA~L~V~a~ 423 (1051)
T KOG3513|consen 374 PAERDPRYKIDDGTLIISNVQES------DSGVYQCIAENKYGTIYANAELKVLAS 423 (1051)
T ss_pred ccCCCcceEEeCCEEEEEecccc------cCeEEEeeeecccceEeeeeEEEEEcc
Confidence 432 2347788999999998765 8999999999999999 6778999865
No 34
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.65 E-value=1.9e-15 Score=101.56 Aligned_cols=71 Identities=14% Similarity=0.183 Sum_probs=53.2
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC-cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG-SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK 138 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G-sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~ 138 (145)
+.|.|.+.|.|.|.|+|+ +||..+...........++ +|.|.++..+ |+|.|+|.|+|.+|.. .+..+.|.
T Consensus 21 v~L~C~~~g~P~p~v~W~-k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~~~~L~V~ 93 (95)
T cd05730 21 VTLACDADGFPEPTMTWT-KDGEPIESGEEKYSFNEDGSEMTILDVDKL------DEAEYTCIAENKAGEQEAEIHLKVF 93 (95)
T ss_pred EEEEEeccEeCCCEEEEE-ECCEECcCCCCEEEEeCCCCEEEECCCChh------hCEEEEEEEEcCCCeEEEEEEEEEE
Confidence 999999999999999997 5888775432222333344 6999887654 8999999999999997 33344443
No 35
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.64 E-value=2.1e-15 Score=98.95 Aligned_cols=72 Identities=14% Similarity=0.234 Sum_probs=58.1
Q ss_pred CeEEEeeE-eccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697 60 RGLELTRQ-TRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK 138 (145)
Q Consensus 60 g~~L~C~a-~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~ 138 (145)
.+.|.|.+ .|.|.|+|+|++ ||..+...........+|+|.|.++..+ |+|.|+|.|+|.+|...++.+.+.
T Consensus 13 ~v~l~C~~~~g~p~p~i~W~k-~g~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~s~~~~l~ 85 (86)
T cd05724 13 MAVLECSPPRGHPEPTVSWRK-DGQPLNLDNERVRIVDDGNLLIAEARKS------DEGTYKCVATNMVGERESAAARLS 85 (86)
T ss_pred CEEEEEECCCCCCCCEEEEEE-CCEECCCCCCCEEEccCCEEEEeECCcc------cCEEEEEEEEeccCceeeeeEEEE
Confidence 39999998 899999999984 7887764333334556789999988765 899999999999999988776654
No 36
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.64 E-value=1.8e-15 Score=97.21 Aligned_cols=68 Identities=13% Similarity=0.160 Sum_probs=54.2
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVH 136 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~ 136 (145)
+.|.|.+.|+|.|+++|++ ++..+.... ......+|+|.|.++..+ |+|.|+|.|.|.+|+. .+..+.
T Consensus 4 v~L~C~~~g~P~p~v~W~k-~~~~~~~~~-~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~N~~G~~~~~~~l~ 72 (73)
T cd04969 4 VIIECKPKAAPKPTISWSK-GTELLTNSS-RICIWPDGSLEILNVTKS------DEGKYTCFAENFFGKANSTGSLS 72 (73)
T ss_pred EEEEEeeeEcCCCEEEEEE-CCEEcccCC-CEEECCCCeEEEccCChh------HCEEEEEEEECCCCceEEEEEEE
Confidence 8999999999999999985 777765433 235567789999988765 8999999999999997 333443
No 37
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.64 E-value=2e-15 Score=96.91 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=52.2
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~ 130 (145)
+.|+|.+.|.|.|.++|++.|+..+.... ......+|+|.|..+..+ |+|.|.|+|+|+.|..
T Consensus 4 ~~l~C~~~g~P~p~v~W~~~~~~~~~~~~-~~~~~~~~~L~i~~~~~~------D~G~Y~C~a~N~~G~~ 66 (74)
T cd05764 4 ATLRCKARGDPEPAIHWISPDGKLISNSS-RTLVYDNGTLDILITTVK------DTGSFTCIASNAAGEA 66 (74)
T ss_pred EEEEEEccCcCCCEEEEEeCCCEEecCCC-eEEEecCCEEEEEECChh------hCEEEEEEEECCCCeE
Confidence 78999999999999999877887765432 335567889999877654 8999999999999986
No 38
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.63 E-value=1.5e-15 Score=97.08 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=50.3
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHV 137 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v 137 (145)
+.|.|.+.|+|+|+++|+| ||.++... ...++|.|.++..+ |+|.|+|+|+|++|.. .+..++|
T Consensus 1 ~~l~c~v~g~P~P~v~W~k-dg~~l~~~------~~~~~L~i~~v~~~------D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYK-DGKLISGK------HSQHSLQIKDVTEA------SAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCCEEEEEE-CCEECccc------CCcCEEEECCCCHH------HCEEEEEEEEECCccEEEEEEEEE
Confidence 4689999999999999985 88887521 13568999888665 8999999999999986 3334444
No 39
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.63 E-value=1.8e-15 Score=96.02 Aligned_cols=61 Identities=18% Similarity=0.155 Sum_probs=49.1
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~ 130 (145)
+.|+|.+.|.|+|.++|++ ++..+.. .......+++|.|.++..+ |+|.|.|.|+|.+|..
T Consensus 1 v~l~C~~~g~P~p~v~W~k-~~~~~~~--~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~ 61 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRK-EDGELPK--GRAEILDDKSLKIRNVTAG------DEGSYTCEAENMVGKI 61 (69)
T ss_pred CEEEEECccCCCCEEEEEE-CCccCCC--CcEEEeeCCEEEECcCChh------HCEEEEEEEEcCCCcE
Confidence 4799999999999999986 5555432 2234456789999988765 8999999999999997
No 40
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.63 E-value=3.3e-15 Score=96.00 Aligned_cols=63 Identities=14% Similarity=0.145 Sum_probs=48.9
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceEEee--CCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALS--NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~--~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~ 130 (145)
+.|+|.+.|+|.|+++|+ +||..+....+...... .++|.|.++..+ |+|.|+|.|+|.+|+.
T Consensus 2 ~~l~c~~~G~P~p~v~W~-k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~ 66 (74)
T cd05748 2 VRLEVPISGRPTPTVTWS-KDGKPLKLSGRVQIETTASSTSLVIKNAERS------DSGKYTLTLKNPAGEK 66 (74)
T ss_pred EEEEeeEeeeCCCeEEEE-ECCEEcCCCCeEEEEECCCeEEEEECCCCcC------cCEEEEEEEECCCccE
Confidence 679999999999999997 47888754332222222 347999888655 8999999999999996
No 41
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.63 E-value=3.1e-15 Score=100.29 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=50.1
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC---cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG---SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G---sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~ 130 (145)
+.|.|.+.|+|.|+|+|++ +|.++....+.+....++ +|.|.++..+ |+|.|+|.|+|.+|+.
T Consensus 19 v~L~C~v~G~P~p~v~W~k-~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~ 84 (92)
T cd05737 19 LNLTCTVFGDPDPEVSWLK-NDQALALSDHYNVKVEQGKYASLTIKGVSSE------DSGKYGIVVKNKYGGE 84 (92)
T ss_pred EEEEEEEEecCCCeEEEEE-CCEECccCCCEEEEEcCCCEEEEEEccCChh------hCEEEEEEEEECCCcc
Confidence 8999999999999999985 788876443333333322 7999887655 8999999999999997
No 42
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.63 E-value=2.4e-15 Score=96.55 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=54.1
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHV 137 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v 137 (145)
+.|.|.+.|+|+|+++|++ ||.++... .+....+++|.|.++..+ |+|.|+|.|+|.+|.. .+..+.|
T Consensus 1 ~~l~c~v~g~P~p~v~W~k-~g~~l~~~--~~~~~~~~~L~I~~v~~~------D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYK-NGKLISEK--NRTKKSGHSLTIKDVTEE------DAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCCEEEEEE-CCEECCCC--CEEEcCCCEEEECcCCHH------HCEEEEEEEEcCCccEEEEEEEEE
Confidence 3689999999999999985 88887643 334556679999988665 8999999999999986 4445544
No 43
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.63 E-value=1.8e-15 Score=97.34 Aligned_cols=68 Identities=13% Similarity=0.081 Sum_probs=52.9
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK 138 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~ 138 (145)
+.|.|.+.|+|+|+++|+| ||+++... . ....+++|.|..+..+ |+|.|+|.|+|.+|+. .+..+.|.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k-~g~~l~~~--~-~~~~~~~L~I~~v~~~------D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYK-NGQLIVLN--H-TFKRGVHLTIYEVTEK------DAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEEEEeCCCEEEEEE-CCEECCCC--C-EEccCCEEEECcCCHH------HCEEEEEEEEECCCceeeEEEEEEE
Confidence 3689999999999999985 88887542 1 2334558999887655 8999999999999987 45555553
No 44
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.63 E-value=2.7e-15 Score=100.09 Aligned_cols=64 Identities=11% Similarity=0.170 Sum_probs=49.1
Q ss_pred CeEEEeeEeccCCCEEEEEccCCeEeecccCceE--EeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697 60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRI--ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~--~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~ 130 (145)
.+.|.|.|.|+|.|+|+|++ ||..+........ ....++|.|.++..+ |.|.|+|.|+|.+|+.
T Consensus 17 ~v~l~C~~~G~P~p~v~W~~-~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~g~Y~C~A~N~~G~~ 82 (90)
T cd04972 17 TATIRCTAEGSPLPKVEWII-AGLIVIQTRTDTLETTVDIYNLQLSNITSE------TQTTVTCTAENPVGQA 82 (90)
T ss_pred cEEEEEEEEEcCCCeEEEEE-CCEEccCCccEEEEecCCEEEEEEecCCcc------cCEEEEEEEECCCCce
Confidence 39999999999999999985 7776643222111 123348999888655 7999999999999997
No 45
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.62 E-value=6e-15 Score=98.51 Aligned_cols=75 Identities=15% Similarity=0.137 Sum_probs=55.3
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceEEe--eC-----CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIAL--SN-----GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LS 132 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~--~~-----GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s 132 (145)
+.|.|.+.|.|+|.|+|+ ++++.+........+. .. .+|.|.++..+ |+|.|.|.|+|++|+. .+
T Consensus 4 ~~l~C~~~g~p~~~i~W~-k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~------D~G~YtC~A~N~~G~~~~~ 76 (88)
T cd05735 4 KEMSCTAHGEKPIIVRWE-KEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVRE------DSGFFSCHAINSYGEDRGI 76 (88)
T ss_pred EEEEEEEECCCCCEEEEe-eCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcc------cCEEEEEEEEcCCCcceEE
Confidence 799999999999999997 5777775332222221 11 36888877655 8999999999999998 55
Q ss_pred EEEEEEeccC
Q psy5697 133 RFVHVKADSR 142 (145)
Q Consensus 133 ~~v~v~~~~~ 142 (145)
..+.|...+.
T Consensus 77 ~~L~V~~~P~ 86 (88)
T cd05735 77 IQLTVQEPPD 86 (88)
T ss_pred EEEEEeCCCC
Confidence 5777775443
No 46
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.62 E-value=6.6e-15 Score=99.52 Aligned_cols=71 Identities=14% Similarity=0.211 Sum_probs=56.6
Q ss_pred CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC---cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy5697 60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG---SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 136 (145)
Q Consensus 60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G---sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~ 136 (145)
.+.|.|.+.|+|. .++|++.+|.++....+ ..+..+| +|.|..+..+ |+|.|+|.|+|.+|....+.+.
T Consensus 17 ~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r-~~~~~~g~~~~L~I~~v~~~------D~G~Y~C~A~N~~G~~~~~~i~ 88 (92)
T cd05866 17 SKFFTCTAIGEPE-SIDWYNPQGEKIVSSQR-VVVQKEGVRSRLTIYNANIE------DAGIYRCQATDAKGQTQEATVV 88 (92)
T ss_pred eEEEEEEEEEeCC-eEEEEeCCCeEecCCCC-EEEEeCCCeeEEEEecCChH------HCEEEEEEEEcCCCcEEEEEEE
Confidence 3999999999998 99999767877754332 3444455 8999988665 8999999999999998777776
Q ss_pred EE
Q psy5697 137 VK 138 (145)
Q Consensus 137 v~ 138 (145)
+.
T Consensus 89 l~ 90 (92)
T cd05866 89 LE 90 (92)
T ss_pred EE
Confidence 65
No 47
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.62 E-value=5.5e-15 Score=100.17 Aligned_cols=78 Identities=15% Similarity=0.172 Sum_probs=54.9
Q ss_pred CCEEEEcCCC-CCccC--eEEEeeEeccCCCEEEEEcc-CCeEeecc---cCce-EEe---eCCcEEEcCCCCCCCCCCC
Q psy5697 46 YPFRIKSAPG-GNRTR--GLELTRQTRYEPSQLGWRFS-NNTVIAYV---KDLR-IAL---SNGSLMFPPFPETGFRPDV 114 (145)
Q Consensus 46 ~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~i~W~~~-dg~~i~~~---~~~~-~~~---~~GsL~i~~~~~~~~~~~~ 114 (145)
+|.+++ +++ ....| +.|.|.+.|+|.|.|+|++. +|..+... ...+ .+. .+++|.|.++..+
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~------ 74 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLS------ 74 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcC------
Confidence 577655 455 33333 99999999999999999864 45444311 1112 222 2358999988765
Q ss_pred CCeEEEEEEEcCCCce
Q psy5697 115 HSTVYRCRASNEAGVI 130 (145)
Q Consensus 115 d~G~Y~C~A~N~~G~~ 130 (145)
|+|.|+|.|+|.+|..
T Consensus 75 D~G~Y~C~A~N~~G~~ 90 (98)
T cd05870 75 DSGRYDCEAASRIGGH 90 (98)
T ss_pred CCEEEEEEEeccCCcc
Confidence 8999999999999986
No 48
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.61 E-value=4.7e-15 Score=101.84 Aligned_cols=71 Identities=15% Similarity=0.180 Sum_probs=54.0
Q ss_pred eEEEeeEec-cCCCEEEEEccCCeEeecccCceEEee-------CCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-E
Q psy5697 61 GLELTRQTR-YEPSQLGWRFSNNTVIAYVKDLRIALS-------NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-L 131 (145)
Q Consensus 61 ~~L~C~a~G-~P~P~i~W~~~dg~~i~~~~~~~~~~~-------~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~ 131 (145)
+.|.|.+.| .|+|+|+|+| ||.++........... .++|.|..+..+ |+|.|+|.|+|+.|+. .
T Consensus 21 v~L~c~v~g~~P~p~v~W~K-dg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Ytc~A~N~~G~~~~ 93 (101)
T cd04975 21 LNLVVEVEAYPPPPHINWTY-DNRTLTNKLTEIVTSENESEYRYVSELKLVRLKES------EAGTYTFLASNSDASKSL 93 (101)
T ss_pred EEEEEEEEecCCCCccEEEe-CCeeCCCCcceeEEEeccCcceEEEEEEEeecCHh------hCeeEEEEEECCCccEEE
Confidence 899999999 9999999984 9998874332222222 257999888665 8999999999999987 4
Q ss_pred EEEEEEE
Q psy5697 132 SRFVHVK 138 (145)
Q Consensus 132 s~~v~v~ 138 (145)
+..+.|.
T Consensus 94 t~~L~V~ 100 (101)
T cd04975 94 TFELYVN 100 (101)
T ss_pred EEEEEEE
Confidence 4455553
No 49
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.61 E-value=6.3e-15 Score=98.35 Aligned_cols=71 Identities=15% Similarity=0.168 Sum_probs=53.9
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEee-------cccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIA-------YVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LS 132 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~-------~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s 132 (145)
+.|.|.+.|+|.|+|.|++ +|..+. .......+..+|+|.|.++..+ |+|.|+|.|.|.+|++ .+
T Consensus 4 v~L~C~~~g~P~p~v~W~k-~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~~ 76 (90)
T cd05726 4 VTFQCEATGNPQPAIFWQK-EGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRS------DVGYYICQTLNVAGSILTK 76 (90)
T ss_pred EEEEEECCccCCCEEEEEe-CCCcceeecccCCCCCCeEEECCCCeEEEeeCChh------hCEEEEEEEEcCCCceEEE
Confidence 8999999999999999986 554321 0111223455789999988765 8999999999999998 44
Q ss_pred EEEEEE
Q psy5697 133 RFVHVK 138 (145)
Q Consensus 133 ~~v~v~ 138 (145)
..+.|.
T Consensus 77 ~~l~V~ 82 (90)
T cd05726 77 AYLEVT 82 (90)
T ss_pred EEEEEe
Confidence 566666
No 50
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.61 E-value=5.3e-15 Score=98.25 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=55.1
Q ss_pred eEEEeeEeccCCC--EEEEEccCCeEeeccc---CceEE---eeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-E
Q psy5697 61 GLELTRQTRYEPS--QLGWRFSNNTVIAYVK---DLRIA---LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-L 131 (145)
Q Consensus 61 ~~L~C~a~G~P~P--~i~W~~~dg~~i~~~~---~~~~~---~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~ 131 (145)
+.|.|.|.|+|.| +|+|+ +||+++.... ...+. ...|+|.|.+++.+ |+|.|+|.|+|.+|+. .
T Consensus 3 ~~L~C~a~g~P~p~~~v~W~-~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~YtC~A~n~~g~~~~ 75 (85)
T cd05854 3 LTLQCHASHDPTMDLTFTWS-LDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLS------HAGTYTCTAQTVVDSASA 75 (85)
T ss_pred EEEEEEEecCCCCCeEEEEE-ECCeEccccCCCCcEEEEEecceEeEEEEccCChh------hCeEEEEEEecCCCCEEE
Confidence 7899999999998 68997 4888875322 11111 13579999988765 8999999999999998 5
Q ss_pred EEEEEEEe
Q psy5697 132 SRFVHVKA 139 (145)
Q Consensus 132 s~~v~v~~ 139 (145)
+..+.|..
T Consensus 76 ~~~L~V~~ 83 (85)
T cd05854 76 SATLVVRG 83 (85)
T ss_pred EEEEEEEC
Confidence 56777764
No 51
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.61 E-value=3.5e-15 Score=94.57 Aligned_cols=62 Identities=19% Similarity=0.197 Sum_probs=47.6
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~ 130 (145)
+.|+|.+.|.|.|+++|++ ++..+... .......+++|.|.++..+ |+|.|+|.|+|.+|..
T Consensus 1 v~l~C~~~g~P~p~v~W~k-~~~~~~~~-~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~N~~G~~ 62 (71)
T cd05731 1 LLLECIAEGLPTPEISWIK-IGGELPAD-RTKFENFNKTLKIDNVSEE------DDGEYRCTASNSLGSA 62 (71)
T ss_pred CEEEEEeeEecCCeEEEEE-CCeECCCC-ceeEecCCCEEEECCCCHH------HCEEEEEEEEeCCceE
Confidence 4799999999999999986 55555322 1222334568999888655 8999999999999987
No 52
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.60 E-value=1e-14 Score=98.64 Aligned_cols=78 Identities=18% Similarity=0.102 Sum_probs=55.2
Q ss_pred CCEEEEcCCCCCc---cCeEEEeeEeccCCCEEEEEccCCeEeeccc----CceEEee---CCcEEEcCCCCCCCCCCCC
Q psy5697 46 YPFRIKSAPGGNR---TRGLELTRQTRYEPSQLGWRFSNNTVIAYVK----DLRIALS---NGSLMFPPFPETGFRPDVH 115 (145)
Q Consensus 46 ~P~~i~~p~~~~~---~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~----~~~~~~~---~GsL~i~~~~~~~~~~~~d 115 (145)
+|.|...+..... ..+.|.|.+.|.|.|+|+|++ ++..+.... +...+.. .++|.|.++..+ |
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~-~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~------D 74 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRT-STRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYT------D 74 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEE-CCccccCCccccCccEEEEcCccEEEEEEecCccC------c
Confidence 5666666655322 339999999999999999985 666654211 1111212 247999887655 8
Q ss_pred CeEEEEEEEcCCCce
Q psy5697 116 STVYRCRASNEAGVI 130 (145)
Q Consensus 116 ~G~Y~C~A~N~~G~~ 130 (145)
+|.|+|.|+|.+|..
T Consensus 75 ~G~Y~C~A~N~~G~~ 89 (97)
T cd05869 75 AGEYLCTASNTIGQD 89 (97)
T ss_pred CEEEEEEEecCCCCe
Confidence 999999999999997
No 53
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.60 E-value=7.2e-15 Score=96.99 Aligned_cols=62 Identities=23% Similarity=0.189 Sum_probs=48.0
Q ss_pred EEeeEeccCCCEEEEEccCCeEeecccCceEE---------eeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceE
Q psy5697 63 ELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIA---------LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 131 (145)
Q Consensus 63 L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~---------~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 131 (145)
++|.+.|+|+|+|+|+| ||.++......... ...|+|.|.++..+ |+|.|+|+|+|.+|++.
T Consensus 3 i~~~v~G~P~P~v~W~k-~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~YtC~A~N~~G~~~ 73 (81)
T cd04971 3 IPFTVRGNPKPTLTWYH-NGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHV------NNGNYTLVASNEYGQDS 73 (81)
T ss_pred EEEEeEeeCCCcEEEEE-CCEECcCCCceeEEEEeecccccccEEEEEECCCCcc------cCeEEEEEEEeCCCCee
Confidence 68999999999999985 88888654322111 12457999887654 89999999999999973
No 54
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.60 E-value=6.5e-15 Score=98.52 Aligned_cols=71 Identities=14% Similarity=0.114 Sum_probs=49.5
Q ss_pred eEEEeeEeccCCCEEEEEcc---CCeEeecc--cCceE---------EeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697 61 GLELTRQTRYEPSQLGWRFS---NNTVIAYV--KDLRI---------ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNE 126 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~---dg~~i~~~--~~~~~---------~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~ 126 (145)
++|+|.|.|.|.|+|+|+|. +|..+... +.... ....+.|.|.++..+ |+|.|+|.|+|.
T Consensus 4 v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~A~N~ 77 (90)
T cd04974 4 VEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFD------DAGEYTCLAGNS 77 (90)
T ss_pred EEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccc------cCcEEEEEeecc
Confidence 89999999999999999864 23333211 11000 112357899887765 899999999999
Q ss_pred CCce-EEEEEEE
Q psy5697 127 AGVI-LSRFVHV 137 (145)
Q Consensus 127 ~G~~-~s~~v~v 137 (145)
+|+. .+..+.|
T Consensus 78 ~G~~~~sa~L~V 89 (90)
T cd04974 78 IGPSHHSAWLTV 89 (90)
T ss_pred cCcccCCEEEEe
Confidence 9997 4445544
No 55
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.60 E-value=6.8e-15 Score=97.09 Aligned_cols=72 Identities=24% Similarity=0.234 Sum_probs=54.8
Q ss_pred eEEEeeEeccCCC--EEEEEccCCeEeecccC-c---e--EEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-E
Q psy5697 61 GLELTRQTRYEPS--QLGWRFSNNTVIAYVKD-L---R--IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-L 131 (145)
Q Consensus 61 ~~L~C~a~G~P~P--~i~W~~~dg~~i~~~~~-~---~--~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~ 131 (145)
+.|.|.|.|.|.| +++|+ +||+.+..... . + ....+|+|.|.+++.+ |+|.|+|.|+|.+|.. .
T Consensus 3 ~~L~C~~~g~P~p~i~~~W~-~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~n~~g~~~~ 75 (85)
T cd04970 3 ITLQCHASHDPTLDLTFTWS-FNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLK------HAGKYTCTAQTVVDSLSA 75 (85)
T ss_pred EEEEEEEecCCCCCeEEEEE-ECCeEeeccCCCccEEEEecccccceEEEccCCHH------hCeeeEEEEecCCCcEEE
Confidence 7899999999998 67997 58888763221 1 1 1235679999988765 8999999999999987 5
Q ss_pred EEEEEEEe
Q psy5697 132 SRFVHVKA 139 (145)
Q Consensus 132 s~~v~v~~ 139 (145)
+..+.|..
T Consensus 76 ~~~l~V~~ 83 (85)
T cd04970 76 SADLIVRG 83 (85)
T ss_pred EEEEEEEC
Confidence 55666664
No 56
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.60 E-value=7.5e-15 Score=93.97 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=46.1
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~ 130 (145)
+.|+|.|.|+|.|+|+|++ +|.++... .+....++.|.|.++. |+|.|+|.|+|.+|++
T Consensus 4 v~L~C~a~G~P~P~v~W~k-~g~~l~~~--~~~~~~~~~L~i~~~~--------d~G~Y~C~A~N~~G~~ 62 (69)
T cd05739 4 VNLTCVAVGAPMPYVKWMK-GGEELTKE--DEMPVGRNVLELTNIY--------ESANYTCVAISSLGMI 62 (69)
T ss_pred EEEEEEeeecCCCEEEEEE-CCEECCCc--cceecCccEEEEeccc--------cCeeEEEEEEeCCCEE
Confidence 8999999999999999985 77776432 2233344578887642 6999999999999997
No 57
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.59 E-value=1.3e-14 Score=96.49 Aligned_cols=63 Identities=10% Similarity=0.014 Sum_probs=49.6
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceEEe---eCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIAL---SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~---~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~ 130 (145)
+.|.|.+.|+|+|.|+|++ ||.++....+...+. ..++|.|..+..+ |+|.|.|.|+|++|+.
T Consensus 13 v~l~c~~~G~P~P~v~W~k-~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~------D~G~Y~c~a~N~~G~~ 78 (86)
T cd05894 13 LRLDVPISGEPAPTVTWSR-GDKAFTETEGRVRVESYKDLSSFVIEGAERE------DEGVYTITVTNPVGED 78 (86)
T ss_pred EEEEeeEeecCCCeEEEEE-CCEECccCCCeEEEEEcCCeEEEEECCCccC------cCEEEEEEEEeCCCcE
Confidence 8999999999999999974 788876432222222 1247999887665 8999999999999996
No 58
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.59 E-value=1.3e-14 Score=95.78 Aligned_cols=83 Identities=18% Similarity=0.216 Sum_probs=62.3
Q ss_pred CEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeC--CcEEEcCCCCCCCCCCCCCeEEEE
Q psy5697 47 PFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSN--GSLMFPPFPETGFRPDVHSTVYRC 121 (145)
Q Consensus 47 P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~--GsL~i~~~~~~~~~~~~d~G~Y~C 121 (145)
|.|++.|.+ .... .+.|.|.+.|.|.|+++|++ ||..+....+....... .+|.|.++..+ |+|.|+|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~-~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C 73 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYK-NGRPLTSSQRYQIESDGGSSSLTIKNVTRE------DAGTYTC 73 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEE-TTEEEESSSSEEEEEETTEEEEEESSESGG------GSEEEEE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccc-cccceeeeeeeeeecccceeEEccCCCChh------hCEEEEE
Confidence 677888876 2233 39999999999999999985 78888765444333333 38999988765 8999999
Q ss_pred EEEcCCCce-EEEEEE
Q psy5697 122 RASNEAGVI-LSRFVH 136 (145)
Q Consensus 122 ~A~N~~G~~-~s~~v~ 136 (145)
.|+|..|.. .+..+.
T Consensus 74 ~~~n~~g~~~~~~~l~ 89 (90)
T PF07679_consen 74 VASNSSGEATASVNLT 89 (90)
T ss_dssp EEEETTEEEEEEEEEE
T ss_pred EEEECCCEEEEEEEEE
Confidence 999999987 333443
No 59
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.59 E-value=1.3e-14 Score=99.53 Aligned_cols=72 Identities=18% Similarity=0.177 Sum_probs=54.9
Q ss_pred CeEEEeeEeccCCCEEEEEccCCeEeecccCceEE--------eeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-
Q psy5697 60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIA--------LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI- 130 (145)
Q Consensus 60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~--------~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~- 130 (145)
.+.|.|.+.|+|+|+|+|+ +||.++......... ....+|.|..+..+ |+|.|+|.|+|++|+.
T Consensus 20 ~~~l~~~v~g~P~P~v~W~-kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~------D~G~Ytc~A~N~~g~~~ 92 (101)
T cd05859 20 VKEFVVEVEAYPPPQIRWL-KDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEE------DSGLYTALAQNEDAVKS 92 (101)
T ss_pred cEEEEEEEEEeCCCceEEE-ECCEECcCCcceEEeccccccceeeccEEEEeeCCHH------HCEEEEEEEEcCCceEE
Confidence 3899999999999999998 488887643321111 11357999888765 8999999999999997
Q ss_pred EEEEEEEE
Q psy5697 131 LSRFVHVK 138 (145)
Q Consensus 131 ~s~~v~v~ 138 (145)
.+..+.|.
T Consensus 93 ~t~~l~V~ 100 (101)
T cd05859 93 YTFALQIQ 100 (101)
T ss_pred EEEEEEEE
Confidence 55566654
No 60
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.59 E-value=7.5e-15 Score=96.77 Aligned_cols=61 Identities=15% Similarity=0.128 Sum_probs=47.8
Q ss_pred EEeeEeccCCCEEEEEccCCeEeecccCceE---E----eeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697 63 ELTRQTRYEPSQLGWRFSNNTVIAYVKDLRI---A----LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 63 L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~---~----~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~ 130 (145)
+.|.+.|+|+|+|+|+ +||+++.+.+.... . ...++|.|.++..+ |+|.|.|+|+|.+|++
T Consensus 3 i~~~v~G~P~Pti~W~-kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------D~G~YtC~A~N~~G~~ 70 (79)
T cd05855 3 IPFTVKGNPKPTLQWF-HEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHL------NNGIYTLVAKNEYGED 70 (79)
T ss_pred EEEEEeEeCCCceEEE-ECCEECCCCcceeeeeEeecccceEEEEEECCCCcc------cCEEEEEEEEcCCccc
Confidence 6899999999999998 58898865432211 1 12358999887665 8999999999999987
No 61
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.58 E-value=1.4e-14 Score=95.06 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=49.2
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCc---eEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDL---RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~---~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~ 130 (145)
+.|.|.+.|.|+|+|+|++ ||..+...... ......++|.|.++..+ |+|.|+|.|+|.+|++
T Consensus 12 ~~L~C~~~g~P~p~i~W~k-~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~------D~G~Y~C~a~N~~G~~ 77 (85)
T cd05857 12 VKFRCPAAGNPTPTMRWLK-NGKEFKQEHRIGGYKVRNQHWSLIMESVVPS------DKGNYTCVVENEYGSI 77 (85)
T ss_pred EEEEEEcCCCCCCEEEEEE-CCEECCCCCceeeeEEeCCceEEEEccCCcc------cCEEEEEEEEeCCCEE
Confidence 8999999999999999985 88877543211 11223457999877654 8999999999999997
No 62
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.58 E-value=2.5e-14 Score=99.17 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=51.2
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceE-E-e-----eCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRI-A-L-----SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LS 132 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~-~-~-----~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s 132 (145)
+.|.|.|.|+|+|.++|++ ||..+........ . . ..++|.|.++... .|.|.|+|.|+|.+|+. .+
T Consensus 26 v~L~C~a~G~P~p~i~W~k-~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~-----~D~G~Y~C~A~N~~G~~~~~ 99 (109)
T cd05773 26 ANLVCQAQGVPRVQFRWAK-NGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAA-----LDYALFTCTAHNSLGEDSLD 99 (109)
T ss_pred EEEEEECcccCCCEEEEEE-CCEECCCCCCeEEEEeeccCccceeEEEECcCCcc-----CCCEEEEEEEEeCCccCcEE
Confidence 8999999999999999974 8888753221111 1 1 1357999876521 28999999999999997 33
Q ss_pred EEEEEE
Q psy5697 133 RFVHVK 138 (145)
Q Consensus 133 ~~v~v~ 138 (145)
..+.++
T Consensus 100 i~L~~~ 105 (109)
T cd05773 100 IQLVST 105 (109)
T ss_pred EEEEec
Confidence 344443
No 63
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.58 E-value=1.7e-14 Score=93.86 Aligned_cols=66 Identities=20% Similarity=0.290 Sum_probs=50.6
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceEEee--CCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALS--NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 133 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~--~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 133 (145)
+.|.|.+.|.|.|.|+|++ |+..+....+...... .++|.|.++..+ |+|.|+|.|+|.+|.+.+.
T Consensus 4 v~l~C~~~g~P~p~v~W~~-~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~~ 71 (78)
T cd05743 4 VEFTCVATGVPTPIINWRL-NWGHVPDSARVSITSEGGYGTLTIRDVKES------DQGAYTCEAINTRGMVFGI 71 (78)
T ss_pred EEEEEEEEEecCCEEEEEE-CCeECCCCCCEEEEECCCEEEEEECCCChH------HCEEEEEEEEecCCEEEec
Confidence 7899999999999999974 6666654332222222 247999888755 8999999999999998554
No 64
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.56 E-value=2.7e-14 Score=95.35 Aligned_cols=73 Identities=15% Similarity=0.194 Sum_probs=56.8
Q ss_pred eEEEeeEec--cCCCEEEEEccCCeEeec-ccCceE-E----eeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-E
Q psy5697 61 GLELTRQTR--YEPSQLGWRFSNNTVIAY-VKDLRI-A----LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-L 131 (145)
Q Consensus 61 ~~L~C~a~G--~P~P~i~W~~~dg~~i~~-~~~~~~-~----~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~ 131 (145)
+.|.|.|.+ .++++|+|+ +||++|.. ..+.+. . ..+|+|.|.+++.+ |+|.|+|.|+|.++++ .
T Consensus 3 ~~l~C~v~~d~~l~~~~~W~-~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~------dsG~YtC~a~n~~~~~~a 75 (85)
T cd05853 3 IVLPCQVSHDHSLDIVFTWS-FNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLK------HAGKYVCMVQTSVDKLSA 75 (85)
T ss_pred EEEEEEeccCCCCCcEEEEE-ECCEECcccCCCccEEEeccCCCCCcEEEecCCHH------HCEEEEEEEEcccCceEE
Confidence 789999987 458999997 58999862 222222 2 24679999998765 8999999999999998 6
Q ss_pred EEEEEEEec
Q psy5697 132 SRFVHVKAD 140 (145)
Q Consensus 132 s~~v~v~~~ 140 (145)
++.+.|+.+
T Consensus 76 ~a~L~V~~p 84 (85)
T cd05853 76 AADLIVRGP 84 (85)
T ss_pred EEEEEEecC
Confidence 778888754
No 65
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.55 E-value=3.1e-14 Score=95.06 Aligned_cols=71 Identities=15% Similarity=0.130 Sum_probs=50.0
Q ss_pred eEEEeeEeccCCCEEEEEcc---CCeEeecccC-ceEEee----------CCcEEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697 61 GLELTRQTRYEPSQLGWRFS---NNTVIAYVKD-LRIALS----------NGSLMFPPFPETGFRPDVHSTVYRCRASNE 126 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~---dg~~i~~~~~-~~~~~~----------~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~ 126 (145)
+.|+|.+.|+|.|.|+|++. +|..+..... ...+.. .++|.|.++..+ |+|.|+|+|+|.
T Consensus 4 v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~A~N~ 77 (90)
T cd05858 4 VEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFE------DAGEYTCLAGNS 77 (90)
T ss_pred EEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHH------HCEEEEEEEEeC
Confidence 79999999999999999863 3444431110 111111 147999988765 899999999999
Q ss_pred CCce-EEEEEEE
Q psy5697 127 AGVI-LSRFVHV 137 (145)
Q Consensus 127 ~G~~-~s~~v~v 137 (145)
+|.. .+..+.|
T Consensus 78 ~G~~~~~a~L~V 89 (90)
T cd05858 78 IGISHHSAWLTV 89 (90)
T ss_pred CCcccceEEEEE
Confidence 9997 4445544
No 66
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.55 E-value=4.7e-14 Score=94.53 Aligned_cols=78 Identities=15% Similarity=0.064 Sum_probs=53.1
Q ss_pred CCEEEEcCCCCCcc--CeEEEeeEeccCCCEEEEEccCCeEeecc----cCceEEee---CCcEEEcCCCCCCCCCCCCC
Q psy5697 46 YPFRIKSAPGGNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYV----KDLRIALS---NGSLMFPPFPETGFRPDVHS 116 (145)
Q Consensus 46 ~P~~i~~p~~~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~----~~~~~~~~---~GsL~i~~~~~~~~~~~~d~ 116 (145)
+|.|...+...... .+.|.|.+.|+|.|.|+|++ ++..+... .+...+.. .++|.|.++..+ |+
T Consensus 2 ~P~i~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~ 74 (96)
T cd05732 2 QPKITYLENQTAVELEQITLTCEAEGDPIPEITWRR-ATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLT------DA 74 (96)
T ss_pred CccceecCceeEecCCcEEEEEEEeEcCCCcEEEEE-CCcccCCCCccccceEEEeCCccEEEEEECcCCcC------cC
Confidence 46664322222223 39999999999999999986 55554321 11112221 247999888765 89
Q ss_pred eEEEEEEEcCCCce
Q psy5697 117 TVYRCRASNEAGVI 130 (145)
Q Consensus 117 G~Y~C~A~N~~G~~ 130 (145)
|.|+|.|+|.+|..
T Consensus 75 G~Y~C~a~N~~G~~ 88 (96)
T cd05732 75 GRYDCEASNRIGGD 88 (96)
T ss_pred EEeEEEEEeCCCCc
Confidence 99999999999997
No 67
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.55 E-value=9.5e-14 Score=93.34 Aligned_cols=71 Identities=13% Similarity=0.241 Sum_probs=52.5
Q ss_pred CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeC---CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy5697 60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSN---GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 136 (145)
Q Consensus 60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~---GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~ 136 (145)
.+.|.|.+.|.| |.|+|++.||..+....+......+ ++|.|.++..+ |+|.|+|.|+|.+|....+.+.
T Consensus 17 ~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~A~N~~g~~~~~sv~ 89 (92)
T cd04977 17 SKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIE------DAGIYKCVATDAKGTESEATVN 89 (92)
T ss_pred eEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcc------cCEEEEEEEEcCCCCcceeEEE
Confidence 399999999997 5999987678776543322222222 27999988765 8999999999999876555555
Q ss_pred E
Q psy5697 137 V 137 (145)
Q Consensus 137 v 137 (145)
+
T Consensus 90 l 90 (92)
T cd04977 90 L 90 (92)
T ss_pred E
Confidence 4
No 68
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.55 E-value=3.6e-14 Score=91.92 Aligned_cols=68 Identities=10% Similarity=0.084 Sum_probs=51.9
Q ss_pred EEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEE
Q psy5697 62 LELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHV 137 (145)
Q Consensus 62 ~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v 137 (145)
.|+|.+.|+|+|+++|+ +||.++.... .+....+++|.|.++..+ |+|.|+|.|+|..... ....+++
T Consensus 2 ~l~c~v~g~P~P~v~W~-kdg~~l~~~~-~~~~~~~~~L~I~~v~~~------D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 2 RLTPKVKAFPAPEVIWL-KDGLPAAEKC-SRYHVDGYSLVIKDVTEE------DAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred eEEeeEEEcCCCeEEEE-ECCEECCCCC-cEEEeCCCEEEECcCCHH------HCEEEEEEEEccccceEeeEEEEE
Confidence 68999999999999998 5888876432 233344569999988765 8999999999995554 5555554
No 69
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.54 E-value=6.4e-14 Score=90.36 Aligned_cols=71 Identities=23% Similarity=0.202 Sum_probs=52.9
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCc-eEEeeCC-cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDL-RIALSNG-SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHV 137 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~-~~~~~~G-sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v 137 (145)
+.|.|.+.|.|+|.|+|++ +|+.+...... .....++ +|.|.++..+ |.|.|+|.|.|.+|.. .+..+.|
T Consensus 1 ~~L~C~v~g~P~p~v~W~k-~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~------D~G~Y~C~a~N~~G~~~~~~~l~V 73 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLK-NGMDITPKLSKQLTLIANGSELHISNVRYE------DTGAYTCIAKNEAGVDEDISSLFV 73 (76)
T ss_pred CEeEeEeeecCCCEEEEEE-CCEECCCCCCccEEEeCCCCEEEECcCCcc------cCEEEEEEEEcCCCCcceEEEEEE
Confidence 4689999999999999974 77776533222 2344555 5999887654 8999999999999997 4445555
Q ss_pred E
Q psy5697 138 K 138 (145)
Q Consensus 138 ~ 138 (145)
+
T Consensus 74 ~ 74 (76)
T cd05736 74 E 74 (76)
T ss_pred E
Confidence 4
No 70
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.54 E-value=4.8e-14 Score=95.51 Aligned_cols=65 Identities=17% Similarity=0.210 Sum_probs=48.4
Q ss_pred eEEEeeEeccCCC-EEEEEccCCeEeeccc-CceEEeeC-------CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceE
Q psy5697 61 GLELTRQTRYEPS-QLGWRFSNNTVIAYVK-DLRIALSN-------GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 131 (145)
Q Consensus 61 ~~L~C~a~G~P~P-~i~W~~~dg~~i~~~~-~~~~~~~~-------GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 131 (145)
+.|.|.|.|.|.| .|+|++ ++..+.... ....+..+ ++|.|.++..++ |.|.|.|.|+|.+|...
T Consensus 19 v~L~C~~~g~P~P~~v~W~~-~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d-----~~G~Y~C~A~N~~G~~~ 92 (98)
T cd05758 19 GRVECFIFSTPPPDRIVWTW-KENELESGSSGRYTVETDPSPGGVLSTLTISNTQESD-----FQTSYNCTAWNSFGSGT 92 (98)
T ss_pred EEEEEEEcccCCCCEeEEEE-CCEEccCCCCCCEEEEEecCCCceEEEEEECCccccc-----cceeEEEEEEcCCCccc
Confidence 9999999999999 699974 777775432 22222222 279998876542 68999999999999963
No 71
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.52 E-value=5.4e-14 Score=89.98 Aligned_cols=63 Identities=17% Similarity=0.151 Sum_probs=48.3
Q ss_pred eEEEeeEec-cCCCEEEEEccCCeEeecccCce--EE---eeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697 61 GLELTRQTR-YEPSQLGWRFSNNTVIAYVKDLR--IA---LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 61 ~~L~C~a~G-~P~P~i~W~~~dg~~i~~~~~~~--~~---~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~ 130 (145)
+.|.|.+.| .|+|+++|++ ||..+....... .. ...++|.|.++..+ |+|.|+|.|+|.+|..
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k-~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~ 69 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFK-DGKELNRKNKPRNIKIRNKKKNSELQINKAKLA------DSGEYTCVVENILGND 69 (75)
T ss_pred CEEEEEccCCCCCceEEEEc-CCeeccccCCcceEEEEecCceEEEEEccCCcc------cCeEEEEEEEEcCCce
Confidence 369999999 9999999985 788776432221 11 12358999887665 8999999999999996
No 72
>KOG4194|consensus
Probab=99.52 E-value=3.8e-14 Score=121.82 Aligned_cols=116 Identities=16% Similarity=0.191 Sum_probs=84.3
Q ss_pred eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CCccC--eEEEeeEeccCCCEEEEEccCCeEee
Q psy5697 10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIA 86 (145)
Q Consensus 10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~ 86 (145)
+-|.+.|=|-..+.|...-+.++ +......|.|++.|.+ +...| +.|+|.|+|+|.|+|.|.|..|...+
T Consensus 583 ~td~grYQCVvtN~FGStysqk~-------KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFP 655 (873)
T KOG4194|consen 583 FTDEGRYQCVVTNHFGSTYSQKA-------KLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFP 655 (873)
T ss_pred cccCceEEEEEecccCcchhhee-------EEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCc
Confidence 56777777777777777655555 2344567999999999 43444 89999999999999999753333343
Q ss_pred cccCce-EE-eeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697 87 YVKDLR-IA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK 138 (145)
Q Consensus 87 ~~~~~~-~~-~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~ 138 (145)
-....+ ++ ..+..+.|.+++.+ |+|.|+|.|.|.+|++ .++.+.|.
T Consensus 656 AA~eRRl~Vmpedd~f~Itnvk~e------D~GiYtC~A~n~AG~isanAtL~V~ 704 (873)
T KOG4194|consen 656 AARERRLHVMPEDDVFFITNVKIE------DQGIYTCTAQNVAGQISANATLTVL 704 (873)
T ss_pred hhhhheeeecCCCCEEEEeccccc------ccceeEEeeeccccceeeceEEEEe
Confidence 222222 23 44568999999876 8999999999999998 56666665
No 73
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.52 E-value=1.3e-13 Score=92.72 Aligned_cols=63 Identities=17% Similarity=0.130 Sum_probs=48.9
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC---cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG---SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G---sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~ 130 (145)
+.|.|.+.|+|.|.+.|++ +|..+....+.......+ +|.|.++..+ |+|.|+|.|+|.+|..
T Consensus 19 v~L~C~v~g~P~p~i~W~k-~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~ 84 (92)
T cd05891 19 LNLTCTVFGNPDPEVIWFK-NDQDIELSEHYSVKLEQGKYASLTIKGVTSE------DSGKYSINVKNKYGGE 84 (92)
T ss_pred EEEEEEEEEeCCCeEEEEE-CCEECCCCCCEEEEEcCCCEEEEEECCCChh------hCEEEEEEEEeCCCce
Confidence 8999999999999999986 566665433332222333 7899887655 8999999999999998
No 74
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.52 E-value=8.8e-14 Score=90.22 Aligned_cols=64 Identities=16% Similarity=0.265 Sum_probs=47.2
Q ss_pred eEEEeeEeccCCCEEEEEccC--CeEeecccC----ceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697 61 GLELTRQTRYEPSQLGWRFSN--NTVIAYVKD----LRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~d--g~~i~~~~~----~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~ 130 (145)
+.|.|.+.|.|.|+|+|++.. +..+...+. .......++|.|.++..+ |+|.|+|.|+|.+|+.
T Consensus 4 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~ 73 (81)
T cd05765 4 ASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQ------DAGLYTCTARNSGGLL 73 (81)
T ss_pred EEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcc------cCEEEEEEEecCCceE
Confidence 899999999999999998642 222111111 112334578999988765 8999999999999996
No 75
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.51 E-value=5.6e-14 Score=90.99 Aligned_cols=63 Identities=17% Similarity=0.157 Sum_probs=48.4
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~ 130 (145)
+.|.|.+.|+|.|.++|++ ||..+............++|.|.++..+ |+|.|.|.|+|..|++
T Consensus 12 v~L~C~~~g~p~p~i~W~k-~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~N~~G~~ 74 (82)
T cd05856 12 VRLKCVASGNPRPDITWLK-DNKPLTPTEIGESRKKKWTLSLKNLKPE------DSGKYTCHVSNRAGEI 74 (82)
T ss_pred EEEEEEeeEeCCCcEEEEE-CCcCCcCCccceecCceEEEEEccCChh------hCEEEEEEEEcCCccE
Confidence 8999999999999999985 6666543221112223358999888765 8999999999999985
No 76
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.46 E-value=4.6e-13 Score=87.46 Aligned_cols=61 Identities=13% Similarity=0.175 Sum_probs=49.3
Q ss_pred CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697 60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~ 130 (145)
.+.|.|.+.|. .|.|.|+ +||.++.... +....+++|.|.++..+ |+|.|+|.|.|..|+.
T Consensus 11 ~v~l~C~~~~~-~~~v~W~-k~g~~l~~~~--~~~~~~~~L~I~~~~~~------DsG~Y~C~a~n~~g~~ 71 (79)
T cd04973 11 LLQLRCRLRDD-VQSINWT-KDGVQLGENN--RTRITGEEVQIKDAVPR------DSGLYACVTSSPSGSD 71 (79)
T ss_pred CEEEEEEecCC-CceEEEe-eCCcCCCCCc--eEEEeCCEEEECCCChh------hCEEEEEEEeCCCCcc
Confidence 38999999996 6899998 5888876432 33345678999988665 8999999999999996
No 77
>KOG3513|consensus
Probab=99.46 E-value=4.5e-13 Score=120.87 Aligned_cols=122 Identities=18% Similarity=0.118 Sum_probs=84.0
Q ss_pred ecCceeEeeccccCcccCCceeeeEEEec----cCCCCCCCEEEEcCCC--CC--ccCeEEEeeEeccCCCEEEEEccCC
Q psy5697 11 ADADTYIIADRSLFPRPLGYLVGNIVYSS----RSENEHYPFRIKSAPG--GN--RTRGLELTRQTRYEPSQLGWRFSNN 82 (145)
Q Consensus 11 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----~~~~~~~P~~i~~p~~--~~--~~g~~L~C~a~G~P~P~i~W~~~dg 82 (145)
.|.+-|.|+..+ +.....++|..+.-. ....+.+|.|...++. .. +..+.|+|.|.|+|.|+|.|+|.||
T Consensus 203 ~D~~~Y~C~a~~--~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g 280 (1051)
T KOG3513|consen 203 SDFGNYICSATF--PSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDG 280 (1051)
T ss_pred hhcCceEEEEEc--hhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCC
Confidence 455677777766 555555555533221 1233567777766553 22 2338999999999999999998888
Q ss_pred eEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEEeccC
Q psy5697 83 TVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVKADSR 142 (145)
Q Consensus 83 ~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~~~~~ 142 (145)
.++.. ..+....+++|.|.+++.+ |+|.|+|.|+|..|+. .+-.+.|.+.+.
T Consensus 281 ~~~~~--r~~~~~~~~vL~I~nv~~~------D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~ 333 (1051)
T KOG3513|consen 281 KPPPR--RATYSNYGKVLKIPNVQYE------DAGEYECIAENSRGSATHSGHVTVYAPPY 333 (1051)
T ss_pred CCCCc--ceeeeccccEEEecccCcC------CCeEEEEEEecccccceeeEEEEEecCch
Confidence 76532 2334455679999998765 8999999999999977 444666666543
No 78
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.41 E-value=1.2e-12 Score=88.64 Aligned_cols=64 Identities=16% Similarity=0.138 Sum_probs=49.5
Q ss_pred CeEEEeeEec-----cCCCEEEEEccCCeEeec--ccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697 60 RGLELTRQTR-----YEPSQLGWRFSNNTVIAY--VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 60 g~~L~C~a~G-----~P~P~i~W~~~dg~~i~~--~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~ 130 (145)
.+.|.|.+.| .|.|.|+|+| +|..+.. ..+.+....+++|.|.++..+ |+|.|+|+|+|..|..
T Consensus 16 ~~~L~C~~~g~~~~~~p~~~v~Wyk-~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~------DsG~Y~C~~~N~~g~~ 86 (94)
T cd05756 16 PVVIKCPLFYSYIAQSPGLNLTWYK-SDGKTPIPTEERSRMHQQKDLLWFLPAALE------DSGLYTCVVRNSTYCM 86 (94)
T ss_pred CeEEECCCCCcccccCCCceEEEEE-cCCCCcccccccceeeecCCeEEEccCCcc------cCeEEEEEEcCCCccE
Confidence 3899999999 7999999986 5554321 112333345679999988766 8999999999999997
No 79
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.38 E-value=1.5e-12 Score=84.02 Aligned_cols=63 Identities=17% Similarity=0.212 Sum_probs=46.5
Q ss_pred eEEEeeEec-cCCCEEEEEccCCeEeecc--cCceEE-e---eCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697 61 GLELTRQTR-YEPSQLGWRFSNNTVIAYV--KDLRIA-L---SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 61 ~~L~C~a~G-~P~P~i~W~~~dg~~i~~~--~~~~~~-~---~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~ 130 (145)
+.|.|.|.| .|.|+++|++ +|+.+... ...+.. . ..++|.|.++..+ |+|.|.|.|+|++|..
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~-~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------DsG~Y~C~a~N~~g~~ 70 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFK-NGKEIGAKNKPDNKIKIRKKKKSSELQISKASLA------DNGEYKCMVSSKLGND 70 (76)
T ss_pred CEEEEecccCCCCCceEEEE-CCcccccCCCCCceEEEEeCCcEEEEEECcCCcc------cCEEEEEEEEeCCCce
Confidence 479999875 6889999985 78877532 112111 1 2357999887655 8999999999999987
No 80
>KOG4221|consensus
Probab=99.37 E-value=9e-12 Score=113.16 Aligned_cols=91 Identities=20% Similarity=0.179 Sum_probs=71.7
Q ss_pred CCEEEEcCCC-CCccC--eEEEeeEeccCCCEEEEEccCCeEeecccCceEE-eeCCcEEEcCCCCCCCCCCCCCeEEEE
Q psy5697 46 YPFRIKSAPG-GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRC 121 (145)
Q Consensus 46 ~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~-~~~GsL~i~~~~~~~~~~~~d~G~Y~C 121 (145)
.-+|+.+|.. .+.+| ++|+|.|.|.|+|+|.|.+ ||..|.... .+.+ ...++|.|.+++.. |+|.|+|
T Consensus 237 ~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlr-ng~~i~~ds-~rivl~g~~slliS~a~~~------dSg~YtC 308 (1381)
T KOG4221|consen 237 KLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLR-NGEKISVDS-YRIVLVGGSSLLISNATDD------DSGKYTC 308 (1381)
T ss_pred ceeeecCCCccccccCCcEEEEEEecCCCCCceEEee-CCeeeeecc-eEEEEecccceEEeccccc------cCceEEE
Confidence 3468888887 34445 9999999999999999975 999887554 4444 44668999988654 8999999
Q ss_pred EEEcCCCce-EEEEEEEEeccCCC
Q psy5697 122 RASNEAGVI-LSRFVHVKADSRIP 144 (145)
Q Consensus 122 ~A~N~~G~~-~s~~v~v~~~~~~p 144 (145)
+|+|..-++ .+++++|++.++++
T Consensus 309 ~Atn~~D~idasaev~V~a~P~~~ 332 (1381)
T KOG4221|consen 309 RATNTNDSIDASAEVTVLAPPGFT 332 (1381)
T ss_pred EecCCCcccccceEEEEEcCCCCC
Confidence 999976666 67899999877764
No 81
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.33 E-value=7.3e-12 Score=82.39 Aligned_cols=61 Identities=18% Similarity=0.112 Sum_probs=47.3
Q ss_pred CeEEEeeEec-cCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceE
Q psy5697 60 RGLELTRQTR-YEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 131 (145)
Q Consensus 60 g~~L~C~a~G-~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 131 (145)
.++|.|.+.| .|.|.|.|++ ++..+.. +....+++|.|..+..+ |+|.|+|.|.|.+|...
T Consensus 18 ~v~L~C~~~~~~~~~~i~W~~-~~~~~~~----~~~~~~~~L~I~~v~~~------DsG~Y~C~a~n~~g~~~ 79 (85)
T cd05754 18 DVSFICRAKSKSPAYTLVWTR-VGGGLPS----RAMDFNGILTIRNVQLS------DAGTYVCTGSNMLDTDE 79 (85)
T ss_pred CEEEEEEcCCCCCCcEEEEEE-CCCcCCC----cccccCCEEEECCCCHH------HCEEEEEEEeccCCeEe
Confidence 3999999975 7999999986 4444321 12234679999888765 89999999999999983
No 82
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.32 E-value=8e-12 Score=82.12 Aligned_cols=70 Identities=16% Similarity=0.094 Sum_probs=49.4
Q ss_pred eEEEeeEecc--CCCEEEEEccCCeEeecc---cCceE----EeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-
Q psy5697 61 GLELTRQTRY--EPSQLGWRFSNNTVIAYV---KDLRI----ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI- 130 (145)
Q Consensus 61 ~~L~C~a~G~--P~P~i~W~~~dg~~i~~~---~~~~~----~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~- 130 (145)
+.|.|.|.|. |+|.|+|.+ +|..+... ..... ....++|.|.++..+ |+|.|.|.|+|..|..
T Consensus 4 ~~L~C~~~g~~~~~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~------DsG~Y~C~a~n~~~~~~ 76 (84)
T cd05742 4 LVLNCTVLTELNEGVDFQWTY-PGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLK------DSGTYTCAASSGTMDQK 76 (84)
T ss_pred EEEEEEEEeCCCccEEEEEec-CCcccCCceEeecccccccceEEEEEEEECCCChh------hCEEEEEEEccCCCceE
Confidence 7999999999 899999974 44332110 00001 112358999888766 8999999999999987
Q ss_pred EEEEEEE
Q psy5697 131 LSRFVHV 137 (145)
Q Consensus 131 ~s~~v~v 137 (145)
.+..+.|
T Consensus 77 ~s~~v~v 83 (84)
T cd05742 77 ESTKVNI 83 (84)
T ss_pred EEEEEEE
Confidence 5556654
No 83
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.31 E-value=2.9e-11 Score=80.23 Aligned_cols=73 Identities=10% Similarity=0.165 Sum_probs=53.7
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeeccc--CceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVK--DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK 138 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~--~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~ 138 (145)
+.|+|.+.| |.|++.|++ ++..+.... ..+.....+.|.|.++..+ |+|.|+|.|+|..+...+..+.|.
T Consensus 14 v~L~C~~~~-p~~~i~W~k-~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~~~~~~~~~~~~~l~ 85 (89)
T cd04979 14 VFLECSPKS-NLASVVWLF-QGGPLQRKEEPEERLLVTEDGLLIRSVSPA------DAGVYTCQSVEHGFKQTLATYSLN 85 (89)
T ss_pred EEEEEeCCC-CCceEEEEE-CCcccccccCcCceEEEcCCCEEEccCCHH------HCEEEEEEEecCccceeEeEEEEE
Confidence 999999988 999999985 555543221 1233334567999888765 899999999999887777777766
Q ss_pred ecc
Q psy5697 139 ADS 141 (145)
Q Consensus 139 ~~~ 141 (145)
+.+
T Consensus 86 V~~ 88 (89)
T cd04979 86 VLE 88 (89)
T ss_pred Eec
Confidence 544
No 84
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.31 E-value=3.6e-12 Score=86.94 Aligned_cols=65 Identities=14% Similarity=0.168 Sum_probs=49.0
Q ss_pred cCeEEEeeE-eccCCCEEEEEccCCeEe--ecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697 59 TRGLELTRQ-TRYEPSQLGWRFSNNTVI--AYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 59 ~g~~L~C~a-~G~P~P~i~W~~~dg~~i--~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~ 130 (145)
.+++|.|.. .|+|.|+|+|++ |+.++ ...++......+|+|.|.++.++ |+|.|+|.|+|.+...
T Consensus 19 ~~~~L~C~pP~g~P~p~~~W~k-~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~------D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 19 WGVVLFCDPPPHYPDLSYRWLL-NEFPNFIPEDGRRFVSQTNGNLYIAKVEAS------DRGNYSCFVSSPSSTK 86 (96)
T ss_pred CcEEEeeCCCCCCCCCEEEEEE-CCcccccccCCCeEEeCCCCcEEEeecCHh------hCceeEEEEEecccCC
Confidence 349999984 999999999985 66543 22222223345899999999776 8999999999997654
No 85
>KOG4222|consensus
Probab=99.27 E-value=7.7e-12 Score=113.01 Aligned_cols=94 Identities=19% Similarity=0.220 Sum_probs=72.5
Q ss_pred CCCCCEEEEcCCCCC---ccCeEEEeeEeccCCCEEEEEccCCeEee-ccc-CceEEeeCCcEEEcCCCCCCCCCCCCCe
Q psy5697 43 NEHYPFRIKSAPGGN---RTRGLELTRQTRYEPSQLGWRFSNNTVIA-YVK-DLRIALSNGSLMFPPFPETGFRPDVHST 117 (145)
Q Consensus 43 ~~~~P~~i~~p~~~~---~~g~~L~C~a~G~P~P~i~W~~~dg~~i~-~~~-~~~~~~~~GsL~i~~~~~~~~~~~~d~G 117 (145)
...+|+++++|.+.. ...++|.|.|.|.|+|+|+|+ +||+... ..+ ..+.++++|+|++..+........ |.|
T Consensus 28 qd~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~-k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~-d~G 105 (1281)
T KOG4222|consen 28 QDQPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWY-KDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGH-DHG 105 (1281)
T ss_pred ccCCCceEecchhhhccCCCCceeecCCCCCCCCceecc-cCCcccCCCCCCCcceecCCccEEEEecccCCcccC-CCc
Confidence 367899999999832 233999999999999999998 5885433 222 346789999999987544332233 899
Q ss_pred EEEEEEEcCCCceEEEEEEEE
Q psy5697 118 VYRCRASNEAGVILSRFVHVK 138 (145)
Q Consensus 118 ~Y~C~A~N~~G~~~s~~v~v~ 138 (145)
.|.|+|+|.+|.+.|+.+.+.
T Consensus 106 ~y~cvasn~~g~avSr~a~L~ 126 (1281)
T KOG4222|consen 106 VYSCVASNRLGEAVSRGASLI 126 (1281)
T ss_pred eeEeeecCccceeeecCceEE
Confidence 999999999999998866655
No 86
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.26 E-value=2.4e-11 Score=80.30 Aligned_cols=77 Identities=13% Similarity=0.039 Sum_probs=56.9
Q ss_pred EEEcCCCCCc--cCeEEEeeEe-ccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEc
Q psy5697 49 RIKSAPGGNR--TRGLELTRQT-RYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASN 125 (145)
Q Consensus 49 ~i~~p~~~~~--~g~~L~C~a~-G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N 125 (145)
+++.|...+. +.++|.|.+. |.|.+++.|++ +|..+.. ...+++|.|.++..+ |+|.|+|.|.|
T Consensus 3 ~l~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k-~g~~~~~------~~~~~~l~I~~~~~~------dsG~Y~C~~~~ 69 (83)
T cd05753 3 LLQVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYR-DGKAKKY------SHSNSNLSIPQATLS------DSGSYHCSGII 69 (83)
T ss_pred EEECCcceecCCCCEEEEeeCCCCCcceEEEEEE-CCeEccc------cCCCceEEECccCHH------HCEEEEEEEEe
Confidence 3455544333 3399999985 57788999985 6665431 123568999888765 89999999999
Q ss_pred CCCceEEEEEEEE
Q psy5697 126 EAGVILSRFVHVK 138 (145)
Q Consensus 126 ~~G~~~s~~v~v~ 138 (145)
..|...|+.+.|+
T Consensus 70 ~~~~~~s~~~~i~ 82 (83)
T cd05753 70 GSYDYSSEPVSIT 82 (83)
T ss_pred CCceecCCCEEEE
Confidence 9999988888775
No 87
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.25 E-value=1.2e-11 Score=84.27 Aligned_cols=65 Identities=20% Similarity=0.160 Sum_probs=49.0
Q ss_pred cCeEEEee-EeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCe-EEEEEEEcCCCce
Q psy5697 59 TRGLELTR-QTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHST-VYRCRASNEAGVI 130 (145)
Q Consensus 59 ~g~~L~C~-a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G-~Y~C~A~N~~G~~ 130 (145)
.++.|+|. ..|+|.|+|.|++.+...+.. .....+..+|+|.|.++..+ |+| .|.|.|+|.+...
T Consensus 19 ~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~-~~Ri~~~~~GnL~fs~v~~~------D~g~~Y~C~a~~~~~~~ 85 (95)
T cd05845 19 DSVVLPCNPPKSAVPLRIYWMNSDLLHITQ-DERVSMGQNGNLYFANVEEQ------DSHPDYICHAHFPGLRT 85 (95)
T ss_pred CCEEEEecCCCCCCCCEEEEECCCCccccc-cccEEECCCceEEEEEEehh------hCCCCeEEEEEcccccc
Confidence 34999997 799999999998533333433 23335556899999998766 788 7999999996543
No 88
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.25 E-value=2.7e-11 Score=79.32 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=51.2
Q ss_pred CEEEEcCCC-CCcc--CeEEEeeEeccCC-CEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697 47 PFRIKSAPG-GNRT--RGLELTRQTRYEP-SQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCR 122 (145)
Q Consensus 47 P~~i~~p~~-~~~~--g~~L~C~a~G~P~-P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~ 122 (145)
|++...|+. .... .+.|.|.+.|.|. +.+.|+ +||..+. ..+++|.|.++ .+ |+|.|+|.
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~-kng~~l~--------~~~~~l~i~~~-~~------dsG~Y~C~ 64 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWY-HNGKLLE--------TTTNSYRIRAA-NN------DSGEYRCQ 64 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEE-ECCEEee--------ccCCeEEEeec-cc------CCEEeEEE
Confidence 556666765 2233 3999999999986 579998 5887662 13567888877 44 89999999
Q ss_pred EEcCCCceEEEEEEE
Q psy5697 123 ASNEAGVILSRFVHV 137 (145)
Q Consensus 123 A~N~~G~~~s~~v~v 137 (145)
|.|. ..|..+++
T Consensus 65 a~~~---~~S~~v~l 76 (78)
T cd05752 65 TQGS---SLSDPVHL 76 (78)
T ss_pred CCCC---cCCCCEEE
Confidence 9986 34444444
No 89
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.24 E-value=8.9e-11 Score=76.07 Aligned_cols=63 Identities=13% Similarity=0.130 Sum_probs=46.5
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceE---EeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRI---ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~---~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~ 130 (145)
+.|.|.+.|.|.|.++|++ ++..+........ ......|.|.++..+ |+|.|.|.|.|..|..
T Consensus 12 ~~l~C~~~~~p~~~v~W~k-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~------d~g~Y~C~~~n~~g~~ 77 (85)
T cd05729 12 VRLKCPASGNPRPTITWLK-DGKPFKKEHRIGGYKVRKKKWTLILESVVPS------DSGKYTCIVENKYGSI 77 (85)
T ss_pred EEEEEEcCCCCCCeEEEEE-CCEECcccCceeEEEccCcEEEEEEeECCcc------cCEEEEEEEEECCceE
Confidence 8999999999999999985 6666543221111 111236888777654 8999999999999996
No 90
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.24 E-value=2.4e-11 Score=81.39 Aligned_cols=59 Identities=12% Similarity=0.220 Sum_probs=47.7
Q ss_pred CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697 60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA 127 (145)
Q Consensus 60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~ 127 (145)
.+.|.|.+.+ |.|+|+|+ +||.++.... .+....+|.|.|.++..+ |+|.|+|.|.+.-
T Consensus 13 ~v~L~C~~~~-~~~~i~W~-~ng~~i~~~~-~r~~~~~~~L~I~nv~~~------DsG~Y~C~a~e~~ 71 (87)
T cd05873 13 NAELKCSPKS-NLARVVWK-FDGKVLTPES-AKYLLYRDGLLIFNASEA------DAGRYQCLSVEKS 71 (87)
T ss_pred CEEEEEECCC-CCCeEEEE-ECCEECCCCC-ceEEEECCcEEEeCCCHH------HCEEEEEEEEecc
Confidence 3999999865 78999997 5899886543 245567889999988765 8999999999874
No 91
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.23 E-value=6.6e-11 Score=71.25 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=46.8
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCC
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG 128 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G 128 (145)
+.|.|.+.|.|.+.+.|++ ++..+. ........+++|.|.++..+ |+|.|+|.++|..|
T Consensus 5 ~~l~C~~~~~~~~~v~W~~-~~~~~~--~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~~~n~~g 63 (63)
T smart00408 5 VTLTCPAEGDPVPNITWLK-DGKPLP--ESNRLSASGSTLTIKSVSLE------DSGEYTCVAENSAG 63 (63)
T ss_pred EEEEeeCccCCCCeEEEEE-CCEECC--CCCEEecCCcEEEEeeCCcc------cCEEEEEEEecCCC
Confidence 8999999999999999985 666665 22233445668999887654 89999999999876
No 92
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.21 E-value=8.6e-11 Score=79.31 Aligned_cols=62 Identities=10% Similarity=0.149 Sum_probs=48.8
Q ss_pred CeEEEeeEecc-----CCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697 60 RGLELTRQTRY-----EPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 60 g~~L~C~a~G~-----P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~ 130 (145)
...|.|.+.+. |.|.|+|+ +||+++.... . ....+++|.|.++..+ |+|.|.|.|+|.+|..
T Consensus 12 ~~~l~Cp~~~~~~~~~~~p~i~Wy-k~~~~i~~~~-~-~~~~~~~L~I~~v~~~------DsG~YtC~~~n~~~~~ 78 (92)
T cd05757 12 GGKIVCPDLDDFKNENTLPPVQWY-KDCKLLEGDR-K-RFVKGSKLLIQNVTEE------DAGNYTCKLTFTHNGK 78 (92)
T ss_pred CCEEECCChHHccCCCCCCcEEEe-ECCEECCCCc-c-EEecCCEEEEeeCChh------hCEEEEEEEEecCCCE
Confidence 38999987543 68899998 5888886433 2 2237789999988765 8999999999998876
No 93
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.20 E-value=2.5e-10 Score=88.86 Aligned_cols=72 Identities=15% Similarity=0.288 Sum_probs=52.1
Q ss_pred CeEEEeeEe-----ccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCC-Cce--E
Q psy5697 60 RGLELTRQT-----RYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA-GVI--L 131 (145)
Q Consensus 60 g~~L~C~a~-----G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~-G~~--~ 131 (145)
.+.|.|.+. |.|.|+|+|+| ||+++....+......+++|.|.++..+ |+|.|+|.|+... |.. +
T Consensus 146 ~v~L~C~~~~~~~~~~p~p~I~WyK-ng~~l~~~~r~~~~~~~~~L~I~~V~~~------DsG~YtC~a~~~~~g~~y~~ 218 (227)
T PHA02826 146 DSKLHCYGTDGISSTFKDYTLTWYK-NGNIVLYTDRIQLRNNNSTLVIKSATHD------DSGIYTCNLRFNKNSNNYNI 218 (227)
T ss_pred CEEEEeeCCCCccccCCCceEEEEE-CCEECCCCCCEEEeCCCCEEEECcCCHH------hCEEEEEEEEEeECCEEEEE
Confidence 389999986 45789999985 8888764432222223458999988766 8999999999985 544 5
Q ss_pred EEEEEEE
Q psy5697 132 SRFVHVK 138 (145)
Q Consensus 132 s~~v~v~ 138 (145)
++.+.|.
T Consensus 219 t~~~~~~ 225 (227)
T PHA02826 219 TKEYKVT 225 (227)
T ss_pred EEEEEEE
Confidence 5665554
No 94
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.18 E-value=2.6e-10 Score=75.33 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=49.5
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeec-ccC--ceEEe---eCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc-eEEE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAY-VKD--LRIAL---SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV-ILSR 133 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~-~~~--~~~~~---~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~-~~s~ 133 (145)
+.|.|.+.|.|.|.+.|.+ +|+.... .+. ..... ...+|.|.++..+ |+|.|.|.|+|..+. ..+.
T Consensus 4 ~~l~C~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~------DsG~Y~C~a~n~~~~~~~~~ 76 (84)
T cd05861 4 ITVNCIVQGNEVVDFSWTY-PGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVE------DSGTYECAAHESTQDQKAFK 76 (84)
T ss_pred EEEEEEEECCCccEEEEEE-CCccCCCCceEEEEEecCCcEEEEEEEECCCCcC------CCEEEEEEEEECccCcceeE
Confidence 8999999999999999974 4332110 000 00111 1347999988766 899999999999873 3566
Q ss_pred EEEEEec
Q psy5697 134 FVHVKAD 140 (145)
Q Consensus 134 ~v~v~~~ 140 (145)
.+.|...
T Consensus 77 sv~i~V~ 83 (84)
T cd05861 77 KVNITVH 83 (84)
T ss_pred EEEEEEe
Confidence 6666543
No 95
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.17 E-value=4.5e-10 Score=91.42 Aligned_cols=115 Identities=17% Similarity=0.143 Sum_probs=68.1
Q ss_pred eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEeccCCC---EEEEEccCCe
Q psy5697 10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRYEPS---QLGWRFSNNT 83 (145)
Q Consensus 10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P---~i~W~~~dg~ 83 (145)
..|++.|.|...+.+......+... +.-.......+|.+ ..|.+ .. +..+.|.|.|.|.|+| .|.|+ +||.
T Consensus 186 ~~d~G~Y~C~~~n~~g~~~~~~t~~-v~l~V~~~~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~-kng~ 262 (326)
T PHA02785 186 KNDAGYYTCVLKYIYGDKTYNVTRI-VKLEVRDRIIPPTM-QLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWI-SNGM 262 (326)
T ss_pred hhhCeEEEEEEEeccCCEEEeEEEE-EEEEEeccCCCcee-cCCCcEEecCCCcEEEEEEEECCCCCCCceEEEE-ECCE
Confidence 4677777777755433322111111 11001112345654 44554 22 2339999999999974 89997 5888
Q ss_pred Eeeccc---CceEE------------eeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEE
Q psy5697 84 VIAYVK---DLRIA------------LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 133 (145)
Q Consensus 84 ~i~~~~---~~~~~------------~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 133 (145)
.+.... ..+.. ...+.|.|.++..+ |+|.|+|.|.|..|...++
T Consensus 263 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~------D~G~Y~C~A~n~~~~~~~~ 321 (326)
T PHA02785 263 YYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEE------DATTFTCMAFTIPSISKTV 321 (326)
T ss_pred ECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchh------cCeeeEEEEEeccCceEee
Confidence 775321 11111 11357999988765 8999999999999766544
No 96
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.15 E-value=3.5e-10 Score=77.39 Aligned_cols=66 Identities=21% Similarity=0.319 Sum_probs=45.4
Q ss_pred cCeEEEeeEeccCCC-EEEEEccCCeEeecc-cCceEE----eeCC---cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697 59 TRGLELTRQTRYEPS-QLGWRFSNNTVIAYV-KDLRIA----LSNG---SLMFPPFPETGFRPDVHSTVYRCRASNEAGV 129 (145)
Q Consensus 59 ~g~~L~C~a~G~P~P-~i~W~~~dg~~i~~~-~~~~~~----~~~G---sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~ 129 (145)
+.+.|.|.+.+.|+| .|.|.+ ++..+... .+...+ ..+| +|.|.++..++ +.|.|.|.|.|.+|+
T Consensus 17 ~~~~L~C~~~s~P~P~~i~W~w-~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d-----~~g~Y~C~a~N~~G~ 90 (98)
T cd05898 17 ERGKVKCFIGSTPPPDRIAWAW-KENVLESGTSERYTVERTSTGSGVLSTLTINNIMEAD-----FQTHYNCTAWNSFGS 90 (98)
T ss_pred CcEEEEEEEccCCCCcEEEEEE-ccccccCCCCCCEEEEEEccCCCcEEEEEECCCcccc-----CCcEEEEEEEeCCcc
Confidence 349999999899987 478876 34455432 222222 2233 68998775432 489999999999999
Q ss_pred e
Q psy5697 130 I 130 (145)
Q Consensus 130 ~ 130 (145)
.
T Consensus 91 d 91 (98)
T cd05898 91 G 91 (98)
T ss_pred c
Confidence 7
No 97
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.14 E-value=6.2e-10 Score=70.89 Aligned_cols=77 Identities=26% Similarity=0.324 Sum_probs=53.8
Q ss_pred CEEEEcCCC-CCccCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEc
Q psy5697 47 PFRIKSAPG-GNRTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASN 125 (145)
Q Consensus 47 P~~i~~p~~-~~~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N 125 (145)
|++...+.. ..+..+.|.|.+.|+|.+++.|++ ++..+...+ +.|.+..+..+ |.|.|+|.|.|
T Consensus 2 P~l~~~~~~v~~g~~~~l~C~~~~~p~~~~~w~~-~~~~~~~~~--------~~~~~~~~~~~------~~g~y~C~~~~ 66 (80)
T PF13895_consen 2 PVLSSSPQSVEEGDSVTLTCSVSGNPPPQVQWYK-NGSPINSSQ--------NGLFIPNVSPE------DSGNYTCRASN 66 (80)
T ss_dssp -EEEEESSEEETTSEEEEEEEEESSSSSEEEEEE-TTEEEEEES--------SEEEESSEEGG------GTEEEEEEEEE
T ss_pred cEEEccceEEeCCCcEEEEEEEEcccceeeeeee-eeeeeeeee--------eeeeeeeeccc------cCEEEEEEEEe
Confidence 555544432 123339999999999999999985 666665322 11666555543 89999999999
Q ss_pred CCCceEEEEEEEE
Q psy5697 126 EAGVILSRFVHVK 138 (145)
Q Consensus 126 ~~G~~~s~~v~v~ 138 (145)
..|...+..+.|.
T Consensus 67 ~~~~~~s~~~~v~ 79 (80)
T PF13895_consen 67 GSGSNTSTSVNVT 79 (80)
T ss_dssp TTEEEEEEEEEEE
T ss_pred CCCCeEeeeEEee
Confidence 8887777777764
No 98
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.10 E-value=7.7e-10 Score=74.37 Aligned_cols=71 Identities=14% Similarity=0.254 Sum_probs=48.4
Q ss_pred eEEEeeEeccCCCEEEEEccC-CeEee-cc-cCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEE-cCCCceEEEEEE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSN-NTVIA-YV-KDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRAS-NEAGVILSRFVH 136 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~d-g~~i~-~~-~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~-N~~G~~~s~~v~ 136 (145)
+.|+|.+ +.|.|.|+|++.+ |.... .. ...+....+++|.|.++..+ |+|.|+|.|+ |..|.... .++
T Consensus 14 v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~------DsG~Y~C~a~~~~~~~~~~-~~~ 85 (91)
T cd05871 14 TFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRS------DAGVYTCTAVEHSFSQTLA-KYT 85 (91)
T ss_pred EEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChh------HCEEEEEEEEccCCeEEEE-EEE
Confidence 8999996 6899999998733 32211 11 11234456678999988766 8999999998 56765533 555
Q ss_pred EEe
Q psy5697 137 VKA 139 (145)
Q Consensus 137 v~~ 139 (145)
|+.
T Consensus 86 l~v 88 (91)
T cd05871 86 LHV 88 (91)
T ss_pred EEE
Confidence 554
No 99
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=99.07 E-value=3.6e-10 Score=70.93 Aligned_cols=72 Identities=17% Similarity=0.161 Sum_probs=48.7
Q ss_pred CCEEEEcCCCCC--ccCeEEEeeEeccC-CCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697 46 YPFRIKSAPGGN--RTRGLELTRQTRYE-PSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCR 122 (145)
Q Consensus 46 ~P~~i~~p~~~~--~~g~~L~C~a~G~P-~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~ 122 (145)
+|.+...+.... ..++.|.|.+.|.| .++|+|+ +...............+++|.|.++..+ |.|.|+|+
T Consensus 1 kP~I~~~~~~~~~~~~~~~l~C~~~~~~~~~~~~W~--~~~~~~~~~~~~~~~~~~~L~i~~v~~~------~~g~y~C~ 72 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGSVTLTCSAEGGPPPPSISWY--DSNPSFNSNSRGSSSSNSTLTISNVTRS------DNGTYTCI 72 (75)
T ss_dssp ESEEEEESTSEEETTEEEEEEEEESSEESSEEEEEE--TEEEEEEEEEEEEEEEEEEEEESSCCGG------GTEEEEEE
T ss_pred CCEEEEcCCCcEeeceeEEEEEEEccccCCeEEEEE--ecCCceeeeeeeccceeeEEEEccCCHH------hCcEEEEE
Confidence 466776666522 22299999999999 8999997 2211111111223445678999877655 89999999
Q ss_pred EEc
Q psy5697 123 ASN 125 (145)
Q Consensus 123 A~N 125 (145)
|+|
T Consensus 73 a~N 75 (75)
T PF13927_consen 73 ASN 75 (75)
T ss_dssp EEE
T ss_pred EEC
Confidence 998
No 100
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.07 E-value=2.2e-09 Score=72.86 Aligned_cols=59 Identities=8% Similarity=0.101 Sum_probs=41.8
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEee-------cccCceEEe---eCCcEEEcCCCCCCCCCCCCCeEEEEEEEc
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIA-------YVKDLRIAL---SNGSLMFPPFPETGFRPDVHSTVYRCRASN 125 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~-------~~~~~~~~~---~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N 125 (145)
+.|+|.+.|.|.|.|.|++.++..+. ...+..... .+++|.|.++..+ |+|.|+|.|..
T Consensus 15 v~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~------D~G~YtC~~~t 83 (95)
T cd05882 15 VTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLS------DEGEYTCSIFT 83 (95)
T ss_pred EEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcc------cCEEEEEEEEe
Confidence 99999999999999999864432211 111111111 1358999998776 89999999988
No 101
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.07 E-value=1.3e-09 Score=71.12 Aligned_cols=70 Identities=20% Similarity=0.200 Sum_probs=45.3
Q ss_pred eEEEeeEec-cCCCEEEEEccCCeEeecccCceEEeeCC-------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-E
Q psy5697 61 GLELTRQTR-YEPSQLGWRFSNNTVIAYVKDLRIALSNG-------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-L 131 (145)
Q Consensus 61 ~~L~C~a~G-~P~P~i~W~~~dg~~i~~~~~~~~~~~~G-------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~ 131 (145)
+.|.|.|.| +|.|+|+|++ ||+++...........+| .|.|.+.. ..|.|.|+|.|+|..-.. .
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~------~~~~~~y~C~a~n~~l~~~~ 74 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFR-DGEVLDGATYSKELLKDGKRETTVSTLPITPSD------HDTGRTFTCRARNEALPTGK 74 (82)
T ss_pred EEEEEEEeCccCCCEEEEEE-CCEEccCceeeeeEecCCCeEEEEEEEEEeCce------ecCCCEEEEEEcCccCCCCc
Confidence 579999987 7999999985 888875422112223343 35554332 226789999999987654 4
Q ss_pred EEEEEE
Q psy5697 132 SRFVHV 137 (145)
Q Consensus 132 s~~v~v 137 (145)
.+.+++
T Consensus 75 ~~s~~l 80 (82)
T cd05759 75 ETSVTL 80 (82)
T ss_pred EEEEEE
Confidence 445544
No 102
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.05 E-value=2.2e-09 Score=72.56 Aligned_cols=70 Identities=9% Similarity=0.119 Sum_probs=47.5
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEee-------cccCceEEe---eCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIA-------YVKDLRIAL---SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~-------~~~~~~~~~---~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~ 130 (145)
+.|+|.+.|.|.|.|.|++.++..+. ..++..... ...+|.|.++..+ |+|.|.|.+.+..+..
T Consensus 15 v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~------DsG~Y~C~~~t~~~~~ 88 (95)
T cd07701 15 ANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLS------DEGQYTCSLFTMPVKT 88 (95)
T ss_pred EEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcc------cCEEEEEEeEeecCcc
Confidence 89999999999999999854333221 111221111 2248999988766 8999999999975554
Q ss_pred EEEEEE
Q psy5697 131 LSRFVH 136 (145)
Q Consensus 131 ~s~~v~ 136 (145)
.+..+.
T Consensus 89 ~~~~l~ 94 (95)
T cd07701 89 SKAYLT 94 (95)
T ss_pred EEEEEE
Confidence 444443
No 103
>KOG4194|consensus
Probab=99.04 E-value=2.9e-10 Score=98.25 Aligned_cols=123 Identities=19% Similarity=0.203 Sum_probs=80.3
Q ss_pred ceeeeecCceeEeec----cc---------cCcccCCceeeeEEEeccCC-----CCCCCEEEEcCCC---CCccCeEEE
Q psy5697 6 ISTLLADADTYIIAD----RS---------LFPRPLGYLVGNIVYSSRSE-----NEHYPFRIKSAPG---GNRTRGLEL 64 (145)
Q Consensus 6 ~~~~~~~~~~~~~~~----~~---------~~p~~~~~~~~~~~~~~~~~-----~~~~P~~i~~p~~---~~~~g~~L~ 64 (145)
-+.++|||++-|+.. +- .||+++.. ..+.+.... ..-+|.++.+|.+ ..+..++|+
T Consensus 448 SssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad---~~i~svd~~~lvC~DspkpqI~~qPe~~~al~g~nirft 524 (873)
T KOG4194|consen 448 SSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPLAD---QSIVSVDTANLVCDDSPKPQIVTQPETVSALIGENIRFT 524 (873)
T ss_pred ccceEEeccHHHHHHHHHhcccccceeeeccCCccccc---ceeEeechhhceecCCCCcceecCchHhhhhhccceEEE
Confidence 345599999888765 21 28998743 324443332 2347899999988 224459999
Q ss_pred eeEec--cCCCEEEEEccCCeEeec--cc-Cce--EEe----------eCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697 65 TRQTR--YEPSQLGWRFSNNTVIAY--VK-DLR--IAL----------SNGSLMFPPFPETGFRPDVHSTVYRCRASNEA 127 (145)
Q Consensus 65 C~a~G--~P~P~i~W~~~dg~~i~~--~~-~~~--~~~----------~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~ 127 (145)
|.|.| .-+-+|.|++ |.+.... .. ..+ .+. -.+-|.+.++.-. |+|.|||+++|.+
T Consensus 525 C~a~sssasplsi~WR~-dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~t------d~grYQCVvtN~F 597 (873)
T KOG4194|consen 525 CNAYSSSASPLSIEWRK-DNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFT------DEGRYQCVVTNHF 597 (873)
T ss_pred EEeccCCCCCceeEeee-ccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecc------cCceEEEEEeccc
Confidence 99988 5567999964 5442211 11 011 111 1235777776544 8999999999999
Q ss_pred CceEEEEEEEE
Q psy5697 128 GVILSRFVHVK 138 (145)
Q Consensus 128 G~~~s~~v~v~ 138 (145)
|+..|+.+.++
T Consensus 598 GStysqk~Klt 608 (873)
T KOG4194|consen 598 GSTYSQKAKLT 608 (873)
T ss_pred CcchhheeEEE
Confidence 99988876665
No 104
>KOG4222|consensus
Probab=99.03 E-value=3.3e-10 Score=102.70 Aligned_cols=95 Identities=16% Similarity=0.138 Sum_probs=72.8
Q ss_pred CCCCCCCEEEEcCCCC-CccC--eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCe
Q psy5697 41 SENEHYPFRIKSAPGG-NRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHST 117 (145)
Q Consensus 41 ~~~~~~P~~i~~p~~~-~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G 117 (145)
.....+|.|.+.|.+. +..+ +.++|++.|+|.|+++|.+ ++..+.- ++......+-+|.|..+... |+|
T Consensus 220 lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk-~~~~~P~-~ry~i~~d~qtl~i~r~tp~------deg 291 (1281)
T KOG4222|consen 220 LSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKK-DDPSLPR-SRYSILDDTQTLRIDRVTPT------DEG 291 (1281)
T ss_pred eeeccCCccccccccceeecccccccccccCCCCCCceeeec-cCCCCCc-cceeeeeccccccccccCCC------ccc
Confidence 4556789999999983 2223 8999999999999999976 4444432 22334455579999877665 899
Q ss_pred EEEEEEEcCCCce-EEEEEEEEeccCC
Q psy5697 118 VYRCRASNEAGVI-LSRFVHVKADSRI 143 (145)
Q Consensus 118 ~Y~C~A~N~~G~~-~s~~v~v~~~~~~ 143 (145)
.|.|.|+|.+|.. .++.++|++.+.|
T Consensus 292 ~y~C~a~n~vG~l~asa~ltV~apP~f 318 (1281)
T KOG4222|consen 292 TYVCPAENLVGGLEASATLTVQAPPSF 318 (1281)
T ss_pred ceeeeccccccccccccceEEecCccc
Confidence 9999999999998 7888988876654
No 105
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.02 E-value=1.2e-09 Score=72.06 Aligned_cols=64 Identities=16% Similarity=0.159 Sum_probs=46.4
Q ss_pred eEEEeeE-eccCCCEEEEEccCCeEeeccc----CceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceE
Q psy5697 61 GLELTRQ-TRYEPSQLGWRFSNNTVIAYVK----DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 131 (145)
Q Consensus 61 ~~L~C~a-~G~P~P~i~W~~~dg~~i~~~~----~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 131 (145)
+.|.|.+ .|.|+++|+|+ +||+++.... ........++|.|.+.... |.+.|.|.|.|+++...
T Consensus 2 ~~L~C~s~~skP~a~i~W~-k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~D------dg~~~~C~A~n~a~~~~ 70 (80)
T cd05885 2 VELTCLSPRSKPAATLRWY-RDRKELKGVISQQENGKTVSVSNTIRFPVDRKD------DGAILSCEASHPALVSQ 70 (80)
T ss_pred EEEEEeCCCccCCCeEEEE-ECCEECCCCcccccCCceEEEEEEEEEEeeecc------CCcEEEEEEEChhhCCC
Confidence 5799995 88999999998 5888875322 1112223457888765433 79999999999999763
No 106
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.01 E-value=2.9e-09 Score=70.71 Aligned_cols=72 Identities=15% Similarity=0.131 Sum_probs=47.5
Q ss_pred eEEEeeEeccCCC--EEEEEccCCeEe--ecccCceE-----EeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-
Q psy5697 61 GLELTRQTRYEPS--QLGWRFSNNTVI--AYVKDLRI-----ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI- 130 (145)
Q Consensus 61 ~~L~C~a~G~P~P--~i~W~~~dg~~i--~~~~~~~~-----~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~- 130 (145)
+.|.|.+.|+|.| .+.|...+.... ...+..+. .....+|.|.++..+ |+|.|.|.|+|..|..
T Consensus 4 ~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~------DsG~Y~C~a~n~~~~~~ 77 (86)
T cd05862 4 LVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLS------DLGRYTCTASSGQMIAK 77 (86)
T ss_pred EEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcc------cCEEEEEEEeecceEec
Confidence 7899999987755 779975332221 11111011 112458999887665 8999999999999976
Q ss_pred EEEEEEEE
Q psy5697 131 LSRFVHVK 138 (145)
Q Consensus 131 ~s~~v~v~ 138 (145)
.+..+.|.
T Consensus 78 ~~t~~~V~ 85 (86)
T cd05862 78 NSTIVIVH 85 (86)
T ss_pred ccEEEEEe
Confidence 55566654
No 107
>smart00409 IG Immunoglobulin.
Probab=98.93 E-value=2.3e-08 Score=63.03 Aligned_cols=71 Identities=17% Similarity=0.267 Sum_probs=51.4
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeC--CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK 138 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~--GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~ 138 (145)
+.|.|.+.+.+.+.+.|++.++..+...........+ .+|.|.++..+ |+|.|.|.+.|..|...+. +.|.
T Consensus 12 ~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~------d~G~Y~C~v~~~~~~~~~~-~~l~ 84 (86)
T smart00409 12 VTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPE------DSGTYTCAATNSSGSASST-TTLT 84 (86)
T ss_pred EEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccc------cCeEEEEEEEcCCCeEEEE-EEEE
Confidence 8999999999999999986437766422222222222 57999887655 8999999999999887544 4443
No 108
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.93 E-value=2.3e-08 Score=63.03 Aligned_cols=71 Identities=17% Similarity=0.267 Sum_probs=51.4
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeC--CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK 138 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~--GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~ 138 (145)
+.|.|.+.+.+.+.+.|++.++..+...........+ .+|.|.++..+ |+|.|.|.+.|..|...+. +.|.
T Consensus 12 ~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~------d~G~Y~C~v~~~~~~~~~~-~~l~ 84 (86)
T smart00410 12 VTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPE------DSGTYTCAATNSSGSASST-TTLT 84 (86)
T ss_pred EEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccc------cCeEEEEEEEcCCCeEEEE-EEEE
Confidence 8999999999999999986437766422222222222 57999887655 8999999999999887544 4443
No 109
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.91 E-value=5.1e-09 Score=71.05 Aligned_cols=65 Identities=15% Similarity=0.232 Sum_probs=45.5
Q ss_pred CeEEEeeEeccCCCEEEEEccCCeEee-c------------ccCceEE---eeCC--cEEEcCCCCCCCCCCCCCeEEEE
Q psy5697 60 RGLELTRQTRYEPSQLGWRFSNNTVIA-Y------------VKDLRIA---LSNG--SLMFPPFPETGFRPDVHSTVYRC 121 (145)
Q Consensus 60 g~~L~C~a~G~P~P~i~W~~~dg~~i~-~------------~~~~~~~---~~~G--sL~i~~~~~~~~~~~~d~G~Y~C 121 (145)
.++|.|.++|.|.+.|.|++.+.+.+. . .++.... ..+| +|.|.++..+ |+|+|.|
T Consensus 9 ~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~s------DsgtY~C 82 (94)
T cd07690 9 TAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIE------DSDTYIC 82 (94)
T ss_pred CEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHH------HCEEEEE
Confidence 399999999999999999853323211 0 0111111 1334 5999988766 8999999
Q ss_pred EEEcCCCce
Q psy5697 122 RASNEAGVI 130 (145)
Q Consensus 122 ~A~N~~G~~ 130 (145)
.+.|..+++
T Consensus 83 ~v~~~~~~~ 91 (94)
T cd07690 83 EVEDKKEEV 91 (94)
T ss_pred EECCccceE
Confidence 999999876
No 110
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.89 E-value=2.2e-08 Score=67.01 Aligned_cols=70 Identities=13% Similarity=0.127 Sum_probs=46.8
Q ss_pred CeEEEeeEeccCCCEEEEEccCCeEee-------cccCceEEe---eCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697 60 RGLELTRQTRYEPSQLGWRFSNNTVIA-------YVKDLRIAL---SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV 129 (145)
Q Consensus 60 g~~L~C~a~G~P~P~i~W~~~dg~~i~-------~~~~~~~~~---~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~ 129 (145)
.+.|.|.+.|.|.|.+.|++.++..+. ...+..... .+.+|.|.++..+ |+|.|.|.+.+....
T Consensus 14 ~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~~~~~~~~ 87 (95)
T cd05717 14 TATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLS------DEGRYTCSLYTMPVQ 87 (95)
T ss_pred CEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcc------cCEEEEEEEecCCCc
Confidence 399999999999999999864443321 011111111 2347999888766 899999999988654
Q ss_pred eEEEEE
Q psy5697 130 ILSRFV 135 (145)
Q Consensus 130 ~~s~~v 135 (145)
..+..+
T Consensus 88 ~~~~~~ 93 (95)
T cd05717 88 TAKATV 93 (95)
T ss_pred eEEEEE
Confidence 333343
No 111
>KOG4221|consensus
Probab=98.86 E-value=1.9e-09 Score=98.45 Aligned_cols=80 Identities=18% Similarity=0.122 Sum_probs=63.1
Q ss_pred CCCCEEEEcCCCC-CccC--eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697 44 EHYPFRIKSAPGG-NRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYR 120 (145)
Q Consensus 44 ~~~P~~i~~p~~~-~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~ 120 (145)
..+|.|++.|.+. ..++ +.|+|.+.|.|.|.+.|+ ++|..+.. .+...+..+|.|+|.-+-.. |+|.||
T Consensus 326 ~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~-kNgd~~ip-sdy~ki~~~~~lrIlgi~~s------deg~yQ 397 (1381)
T KOG4221|consen 326 LAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWY-KNGDRIIP-SDYFKIVGGGNLRILGIVKS------DEGFYQ 397 (1381)
T ss_pred EcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEE-ecCcccCc-ccceEecCCCCcEEEEEecc------cchhhh
Confidence 4578999999883 2233 899999999999999998 58877654 34556666777888876544 899999
Q ss_pred EEEEcCCCceE
Q psy5697 121 CRASNEAGVIL 131 (145)
Q Consensus 121 C~A~N~~G~~~ 131 (145)
|+|+|.+|.+.
T Consensus 398 cvaen~~G~a~ 408 (1381)
T KOG4221|consen 398 CVAENDAGSAQ 408 (1381)
T ss_pred hhhccCccccc
Confidence 99999999983
No 112
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.86 E-value=1.3e-08 Score=69.26 Aligned_cols=72 Identities=11% Similarity=0.185 Sum_probs=51.5
Q ss_pred eEEEee-Eec----cCCCEEEEEccCCeEeecccCceEE-eeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce---E
Q psy5697 61 GLELTR-QTR----YEPSQLGWRFSNNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI---L 131 (145)
Q Consensus 61 ~~L~C~-a~G----~P~P~i~W~~~dg~~i~~~~~~~~~-~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~---~ 131 (145)
..|.|. ..+ .+.|+|+|+ +|+.++...+..... ..++.|.|.++..+ |+|.|+|.|+|.+|.. +
T Consensus 13 ~~l~Cp~~~~f~~~~~~~~v~WY-Kd~~~l~~~~~~~~~~~~~~~L~I~~v~~~------D~G~YtC~~~~~~~g~~y~v 85 (95)
T cd05897 13 GKLVCPDLSDFTINRTDVELQWY-KDSVLLDKDNEKFYSLKGSTYLHIIDVSLN------DSGYYTCKLQFTHEGKKYNI 85 (95)
T ss_pred cEEECCCHHHcccCCCCCcEEEc-cCCEECcCCCcceEecCCCCEEEEEEcChh------hCEEEEEEEEEeeCCEEEEE
Confidence 788997 233 478899998 588888654322223 23457999988766 8999999999998654 5
Q ss_pred EEEEEEEe
Q psy5697 132 SRFVHVKA 139 (145)
Q Consensus 132 s~~v~v~~ 139 (145)
++.+.|..
T Consensus 86 tr~~~l~v 93 (95)
T cd05897 86 TRIIKLRI 93 (95)
T ss_pred EEEEEEEE
Confidence 66666653
No 113
>PHA02785 IL-beta-binding protein; Provisional
Probab=98.78 E-value=3.9e-08 Score=80.07 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=50.0
Q ss_pred CeEEEeeE-----eccCCCEEEEEccCCeEeecccCceEEeeCCc-EEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EE
Q psy5697 60 RGLELTRQ-----TRYEPSQLGWRFSNNTVIAYVKDLRIALSNGS-LMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LS 132 (145)
Q Consensus 60 g~~L~C~a-----~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~Gs-L~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s 132 (145)
.+.|.|.+ .|+|.|+|+|+| +|... . ......+|+ |.|.++..+ |+|.|+|+|+|..|.. .+
T Consensus 43 ~~~l~C~~~~~~~~g~p~~~i~W~K-~g~~~---~-~~~~~~~g~~l~i~~~~~~------DsG~Y~C~a~N~~g~~~~s 111 (326)
T PHA02785 43 PVILPCPQINTLSSGYNILDILWEK-RGADN---D-RIIPIDNGSNMLILNPTQS------DSGIYICITKNETYCDMMS 111 (326)
T ss_pred CEEEECCCccccccCCCCceEEEEE-CCCcc---c-eEEEccCCceEEEcccCcc------cCeEEEEEEECCCcceEEE
Confidence 38999997 799999999986 55321 1 223345664 888776554 8999999999999876 45
Q ss_pred EEEEEEe
Q psy5697 133 RFVHVKA 139 (145)
Q Consensus 133 ~~v~v~~ 139 (145)
..++|..
T Consensus 112 ~~L~V~~ 118 (326)
T PHA02785 112 LNLTIVS 118 (326)
T ss_pred EEEEEEe
Confidence 5666653
No 114
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.76 E-value=2.2e-08 Score=61.81 Aligned_cols=56 Identities=13% Similarity=0.145 Sum_probs=38.2
Q ss_pred eEEEeeE-eccCCCEEEEEccCCeEeecccCceEEeeCCc----EEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697 61 GLELTRQ-TRYEPSQLGWRFSNNTVIAYVKDLRIALSNGS----LMFPPFPETGFRPDVHSTVYRCRA 123 (145)
Q Consensus 61 ~~L~C~a-~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~Gs----L~i~~~~~~~~~~~~d~G~Y~C~A 123 (145)
+.|.|.+ .+.|.+.++|.+.+. .............+.. |.|.++..+ |+|.|+|.|
T Consensus 4 v~L~C~~~~~~~~~~~~W~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~v 64 (64)
T PF00047_consen 4 VTLTCSVSSGPPPTTVTWSKNGQ-SLPEGSTTNRSTNSVSSTSRLTISNVTPE------DSGTYTCVV 64 (64)
T ss_dssp EEEEEEEEESSSTSEEEEEETTT-TTSEEEEEEEEETTTEEEEEEEESSCTGG------GTEEEEEEE
T ss_pred EEEEeecCCCCCCcEEEEEECCc-cccCcceeEeecccceeeeEEEEccCCHH------HCEEEEEEC
Confidence 8999999 999999999986443 3221111111222222 999988765 899999987
No 115
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.68 E-value=9.1e-08 Score=74.49 Aligned_cols=71 Identities=13% Similarity=0.134 Sum_probs=47.9
Q ss_pred CeEEEeeEeccCCC-----------EEEEEccCCeEe--ecc-cC--------ceEEeeCCcEEEcCCCCCCCCCCCCCe
Q psy5697 60 RGLELTRQTRYEPS-----------QLGWRFSNNTVI--AYV-KD--------LRIALSNGSLMFPPFPETGFRPDVHST 117 (145)
Q Consensus 60 g~~L~C~a~G~P~P-----------~i~W~~~dg~~i--~~~-~~--------~~~~~~~GsL~i~~~~~~~~~~~~d~G 117 (145)
.+.|.|.+.++|+| +|+|+|. +... .+. .+ ......+++|.|.++..+ |+|
T Consensus 39 ~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~-~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~------DsG 111 (227)
T PHA02826 39 PMVLLCTGKHYKKSIFFDKTFITSYNVTWSKT-DSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINI------DEG 111 (227)
T ss_pred CEEEEccccccccccccccccCCCccEEEEeC-CeEEEEEcCCCccccccccccceecCCCeEEECCCChH------HCE
Confidence 39999999997755 9999864 4331 110 00 011123579999998766 899
Q ss_pred EEEEEEEcCCCce-EEEEEEE
Q psy5697 118 VYRCRASNEAGVI-LSRFVHV 137 (145)
Q Consensus 118 ~Y~C~A~N~~G~~-~s~~v~v 137 (145)
.|+|.|+|..|.. .+..+.|
T Consensus 112 ~Y~C~a~N~~~~~~~~i~L~V 132 (227)
T PHA02826 112 IYICTISSGNICEESTIRLTF 132 (227)
T ss_pred EEEEEEEECCcceEEEEEEEE
Confidence 9999999998875 3334444
No 116
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.62 E-value=1.9e-07 Score=62.34 Aligned_cols=84 Identities=12% Similarity=0.044 Sum_probs=53.3
Q ss_pred CCEEEEcCCCCCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697 46 YPFRIKSAPGGNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRA 123 (145)
Q Consensus 46 ~P~~i~~p~~~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A 123 (145)
+|.+.-.|...+.. .++|.|.+. .|...+.|++ ||...... ........+.+.|.++..+ |+|.|+|.+
T Consensus 2 kP~L~a~p~~vV~~G~~VtL~C~~~-~~~~~f~l~k-~g~~~~~~-~~~~~~~~~~f~i~~v~~~------~~G~Y~C~~ 72 (91)
T cd05751 2 KPSLWAEPSSVVPLGKPVTLRCQGP-YGAVEYRLYR-EGSTFAVK-KPPEPQNKAKFFIPSMKRE------HAGRYRCYY 72 (91)
T ss_pred CCEEEecCCCccCCCCcEEEEEecC-CCCCEEEEEE-CCCCcccc-ccCCCceeEEEEccCCChh------HCEEEEEEE
Confidence 46666666553333 499999886 6889999974 66543211 0111123457899888765 899999999
Q ss_pred EcC-CCc-eEEEEEEEE
Q psy5697 124 SNE-AGV-ILSRFVHVK 138 (145)
Q Consensus 124 ~N~-~G~-~~s~~v~v~ 138 (145)
.|. .+. ..|..+.+.
T Consensus 73 ~~~~~~~S~~Sd~lel~ 89 (91)
T cd05751 73 RSGVALWSEPSDPLELV 89 (91)
T ss_pred ECCCCccCCCCCcEEEE
Confidence 997 333 244445443
No 117
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.58 E-value=6.7e-07 Score=58.97 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=52.9
Q ss_pred eEEEeeEeccCCCEEEEEccCCeE----ee------------cccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTV----IA------------YVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRAS 124 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~----i~------------~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~ 124 (145)
++|.|.....+...|.|++.+... +. ...+......+++|.|.+++.+ |+|.|+|...
T Consensus 4 VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~------DsG~Y~c~v~ 77 (92)
T cd05741 4 VTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKE------DSGTYTLQII 77 (92)
T ss_pred EEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCch------hcEEEEEEEE
Confidence 899999888888899998754211 10 0112233456789999998776 8999999999
Q ss_pred cCCCceEEEEEEEE
Q psy5697 125 NEAGVILSRFVHVK 138 (145)
Q Consensus 125 N~~G~~~s~~v~v~ 138 (145)
+..|.-....+++.
T Consensus 78 ~~~~~~~~~~~~l~ 91 (92)
T cd05741 78 STNGVTENAKFFLR 91 (92)
T ss_pred cCCCcEEEEEEEEE
Confidence 99988777777664
No 118
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.45 E-value=7e-07 Score=58.51 Aligned_cols=65 Identities=12% Similarity=0.115 Sum_probs=38.6
Q ss_pred eEEEeeEec-cCCCEEEEEccCCeEeecccCceEEe-eCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697 61 GLELTRQTR-YEPSQLGWRFSNNTVIAYVKDLRIAL-SNGSLMFP---PFPETGFRPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 61 ~~L~C~a~G-~P~P~i~W~~~dg~~i~~~~~~~~~~-~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~~G~~ 130 (145)
+.|.|.+.| +|.+.|+|+ +||+.+.... ..... .+|+..+. .+... ...+.+.|+|.|.|+....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~-~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~---~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAATIRWF-KGDKELKGVK-LKEEDENGKTFTVTSSLRFQVD---REDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCCeEEEE-ECCEEccCce-eeEecCCCCEEEEEEEEEEEcc---hhhCCCEEEEEEeChhcCC
Confidence 579999966 599999998 4778775322 11222 23332221 11111 1114569999999997653
No 119
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.40 E-value=6.7e-06 Score=56.76 Aligned_cols=70 Identities=19% Similarity=0.234 Sum_probs=47.6
Q ss_pred CeEEEeeEeccCCC--EEEEEccC----CeEee----c---------ccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697 60 RGLELTRQTRYEPS--QLGWRFSN----NTVIA----Y---------VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYR 120 (145)
Q Consensus 60 g~~L~C~a~G~P~P--~i~W~~~d----g~~i~----~---------~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~ 120 (145)
.+.|.|. +.|.. .|+|+|.. +..|. . .++...+..||+|.|.+++.+ |+|.|.
T Consensus 15 ~V~L~v~--~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~------D~G~Y~ 86 (105)
T cd05774 15 NVLLLVH--NLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQK------DTGFYT 86 (105)
T ss_pred CEEEEec--CCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcc------cCEEEE
Confidence 3899985 45666 99999742 11211 0 123345678999999998766 899999
Q ss_pred EEEEcCCCceEEEEEEE
Q psy5697 121 CRASNEAGVILSRFVHV 137 (145)
Q Consensus 121 C~A~N~~G~~~s~~v~v 137 (145)
|.+.|.-+......+++
T Consensus 87 ~~v~~~~~~~~~~~v~l 103 (105)
T cd05774 87 LQTITTNFQVEQATVHL 103 (105)
T ss_pred EEEEeCCccEEEEEEEE
Confidence 99999886644444443
No 120
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.35 E-value=3.2e-06 Score=56.35 Aligned_cols=67 Identities=21% Similarity=0.230 Sum_probs=45.2
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK 138 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~ 138 (145)
+.|+|...+ +..+++|++ +|..+... ........| |.|..+..+ |+|.|+|.|. +.|-. ....+.+.
T Consensus 14 v~L~C~~~s-~~A~v~W~~-ng~~l~~~-~r~~~~~~G-LlI~~~~~~------dsG~Y~C~s~-E~gf~~~~~~y~l~ 81 (85)
T cd05872 14 VVLPCQLRS-NLASPVWLF-NGTPLNAQ-FSYRVGTDG-LLILVTSPE------HSGTYRCYSE-EEGFQQLVASYSLN 81 (85)
T ss_pred EEEECCCCC-CCccEEEEE-CCcccCCC-cceEEeCCC-CEEEECCHh------hCEEEEEEEe-cCCCeEEEEEEEEE
Confidence 899999988 477999985 77777532 222333444 667666554 8999999987 66654 33455544
No 121
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.32 E-value=3.2e-06 Score=58.38 Aligned_cols=63 Identities=17% Similarity=0.176 Sum_probs=43.3
Q ss_pred eEEEeeE------e-----ccCCCEEEEEccCCeEeec-c----cCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697 61 GLELTRQ------T-----RYEPSQLGWRFSNNTVIAY-V----KDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRAS 124 (145)
Q Consensus 61 ~~L~C~a------~-----G~P~P~i~W~~~dg~~i~~-~----~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~ 124 (145)
+.|.|.. + -.+...++|+| +|..... . .+.|....++.|.|.++..+ |+|.|.|++.
T Consensus 18 v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK-~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~e------DSG~Y~C~~r 90 (104)
T cd05896 18 VRIKCALFYGYIRTNYSMAQSAGLSLMWYK-SSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQ------DSGLYTCVLR 90 (104)
T ss_pred EEEECCCccccccccccccccCCceEEEEE-CCCCCCCCCcccccceeEEEeCCEEEEEeCChh------hCeEEEEEEC
Confidence 8888885 1 22245899986 5433221 1 11345566779999998876 8999999999
Q ss_pred cCCCce
Q psy5697 125 NEAGVI 130 (145)
Q Consensus 125 N~~G~~ 130 (145)
|+-.-.
T Consensus 91 N~t~C~ 96 (104)
T cd05896 91 NSTYCM 96 (104)
T ss_pred CCCcce
Confidence 997544
No 122
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.32 E-value=7.4e-06 Score=56.31 Aligned_cols=72 Identities=15% Similarity=0.150 Sum_probs=50.1
Q ss_pred CeEEEeeEeccCCCE-EEEEccCCeEeecccCce-EEee------CCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-
Q psy5697 60 RGLELTRQTRYEPSQ-LGWRFSNNTVIAYVKDLR-IALS------NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI- 130 (145)
Q Consensus 60 g~~L~C~a~G~P~P~-i~W~~~dg~~i~~~~~~~-~~~~------~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~- 130 (145)
.+.|.|....+|+|+ +.|.+ ++..+....... .... -..|.+..++.+ +.|.|.|.|+|+.++.
T Consensus 20 ~~~L~V~ieAYP~p~~~~W~~-~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~------E~G~YTf~a~N~~~~~s 92 (101)
T cd05860 20 NLDLIVEYEAYPKPEHQQWIY-MNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGT------EGGTYTFLVSNSDASAS 92 (101)
T ss_pred CEEEEEEEEeCCCCeeeEEEc-CCcccCccccceeEEeccCceEEEEEEEEeecChh------hCcEEEEEEECCCCeEE
Confidence 389999999999998 99975 555443222211 1111 136777766554 7999999999999987
Q ss_pred EEEEEEEE
Q psy5697 131 LSRFVHVK 138 (145)
Q Consensus 131 ~s~~v~v~ 138 (145)
++..+.|+
T Consensus 93 ~tF~l~v~ 100 (101)
T cd05860 93 VTFNVYVN 100 (101)
T ss_pred EEEEEEEe
Confidence 56566654
No 123
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.31 E-value=3.5e-06 Score=57.27 Aligned_cols=62 Identities=23% Similarity=0.087 Sum_probs=41.7
Q ss_pred eEEEeeEeccCCCEEEEEccC-C-eE---eec-------ccCceEEe---eCC--cEEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697 61 GLELTRQTRYEPSQLGWRFSN-N-TV---IAY-------VKDLRIAL---SNG--SLMFPPFPETGFRPDVHSTVYRCRA 123 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~d-g-~~---i~~-------~~~~~~~~---~~G--sL~i~~~~~~~~~~~~d~G~Y~C~A 123 (145)
+.|.|.+.+.+.+.+.|++.+ + .+ +.. ..+..... ..+ +|.|.+++.+ |+|.|.|.+
T Consensus 16 v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~------DsG~Y~C~~ 89 (109)
T cd04983 16 VTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLS------DSAVYFCAL 89 (109)
T ss_pred EEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHH------HCEEEEEEE
Confidence 999999999899999998743 1 11 100 11111121 123 7999888765 899999999
Q ss_pred EcCCC
Q psy5697 124 SNEAG 128 (145)
Q Consensus 124 ~N~~G 128 (145)
.+..|
T Consensus 90 ~~~~~ 94 (109)
T cd04983 90 SESGG 94 (109)
T ss_pred ecCCC
Confidence 98754
No 124
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.28 E-value=1.9e-05 Score=53.62 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=42.7
Q ss_pred CeEEEeeEeccC------CCEEEEEccC--C--e-Eee--cc-------cC-ceEEe-----eCCcEEEcCCCCCCCCCC
Q psy5697 60 RGLELTRQTRYE------PSQLGWRFSN--N--T-VIA--YV-------KD-LRIAL-----SNGSLMFPPFPETGFRPD 113 (145)
Q Consensus 60 g~~L~C~a~G~P------~P~i~W~~~d--g--~-~i~--~~-------~~-~~~~~-----~~GsL~i~~~~~~~~~~~ 113 (145)
.++|.|...+.| .+.|.|++.. + . .+- .. +. .+... .+.+|.|.+++.+
T Consensus 4 ~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~s----- 78 (106)
T cd05714 4 NVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLE----- 78 (106)
T ss_pred CEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHH-----
Confidence 389999988764 5799998752 1 1 111 00 00 01111 2348999988766
Q ss_pred CCCeEEEEEEEcCCCce
Q psy5697 114 VHSTVYRCRASNEAGVI 130 (145)
Q Consensus 114 ~d~G~Y~C~A~N~~G~~ 130 (145)
|+|+|.|.+.|..+..
T Consensus 79 -D~G~Y~C~v~~~~~~~ 94 (106)
T cd05714 79 -DSGRYRCEVIDGIEDE 94 (106)
T ss_pred -HCEEEEEEEEcCCCce
Confidence 8999999999987754
No 125
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.26 E-value=1e-05 Score=53.33 Aligned_cols=66 Identities=11% Similarity=0.137 Sum_probs=39.6
Q ss_pred eEEEeeEecc-CCCEEEEEccCCeEeecccCceEEeeC-CcEEEcC---CCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697 61 GLELTRQTRY-EPSQLGWRFSNNTVIAYVKDLRIALSN-GSLMFPP---FPETGFRPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 61 ~~L~C~a~G~-P~P~i~W~~~dg~~i~~~~~~~~~~~~-GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~~G~~ 130 (145)
+.|.|.|.|. |.++|+|+ +||+.+...........+ |+..+.. +... ...+...|.|.|.++....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~-k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~---~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWR-KGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVT---REDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEecCccCCCEeEEE-ECCEECCCcceeEEECCCCCEEEEEEEEEEEec---chhCCCEEEEEEECcccCC
Confidence 5799999775 99999997 588876532211122233 3333221 1111 1225678999999997543
No 126
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.24 E-value=1.8e-06 Score=57.19 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=42.0
Q ss_pred CeEEEeeEecc-CC-CEEEEEccCCeEeecccC--ceEEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697 60 RGLELTRQTRY-EP-SQLGWRFSNNTVIAYVKD--LRIALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNEAGV 129 (145)
Q Consensus 60 g~~L~C~a~G~-P~-P~i~W~~~dg~~i~~~~~--~~~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~~G~ 129 (145)
.+.|.|.|.|. |. ++|+|+ +||+.+..... ......+|+..+. .+... ...+.|.|+|.|+|....
T Consensus 15 ~~~L~C~a~g~~P~~~~i~W~-~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~---~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 15 SVTLTCLATGFYPPDITVTWL-KNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPS---DWNSGDTYTCVVTHESLP 87 (95)
T ss_pred CeEEEEEEeeEECCCcEEEEE-ECCEECCCceeccccccCCCCCEEEEEEEEECHH---HhCCCCCEEEEEEeCCCC
Confidence 38999999998 63 689997 58888754321 1233455543332 12211 112689999999998653
No 127
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.23 E-value=1.9e-05 Score=52.60 Aligned_cols=64 Identities=13% Similarity=0.095 Sum_probs=41.8
Q ss_pred eEEEeeEeccC---CCEEEEEccCCe---Eee---c------cc--CceEEe-----eCCcEEEcCCCCCCCCCCCCCeE
Q psy5697 61 GLELTRQTRYE---PSQLGWRFSNNT---VIA---Y------VK--DLRIAL-----SNGSLMFPPFPETGFRPDVHSTV 118 (145)
Q Consensus 61 ~~L~C~a~G~P---~P~i~W~~~dg~---~i~---~------~~--~~~~~~-----~~GsL~i~~~~~~~~~~~~d~G~ 118 (145)
+.|.|...+.+ ...|.|++.+.. .+. . .+ ..+..+ .+.+|.|.++..+ |+|.
T Consensus 3 v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~------D~G~ 76 (98)
T cd05718 3 VTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLE------DEGN 76 (98)
T ss_pred EEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcc------cCEE
Confidence 78999988765 458999975531 110 0 00 112111 2458999988766 8999
Q ss_pred EEEEEEc-CCCce
Q psy5697 119 YRCRASN-EAGVI 130 (145)
Q Consensus 119 Y~C~A~N-~~G~~ 130 (145)
|.|.+.+ ..|+.
T Consensus 77 Y~C~v~~~~~g~~ 89 (98)
T cd05718 77 YICEFATFPQGNR 89 (98)
T ss_pred EEEEEEeCCCCcE
Confidence 9999875 56665
No 128
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.22 E-value=9e-06 Score=58.05 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=58.4
Q ss_pred eceee-eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCCCC---ccCeEEEeeEecc-CC-CEEEEE
Q psy5697 5 HISTL-LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPGGN---RTRGLELTRQTRY-EP-SQLGWR 78 (145)
Q Consensus 5 ~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~~~---~~g~~L~C~a~G~-P~-P~i~W~ 78 (145)
.|..+ ..|+++|.|......... .+. .......+|.+...+.... ...+.|.|.|.|. |+ ++|+|+
T Consensus 4 ~i~~v~~~D~G~Y~C~~~~~~~~~----~~~----~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~ 75 (139)
T cd05771 4 TLPGLTVHDEGTYICSVSTPPHQA----QQI----IQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWT 75 (139)
T ss_pred EECCCCHHHCEEEEEEEEccCcce----eeE----EEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEE
Confidence 34444 569999999975421111 111 1122235676655554321 2338999999996 54 489998
Q ss_pred ccCCeEee----cccCc----eEEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcCC
Q psy5697 79 FSNNTVIA----YVKDL----RIALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNEA 127 (145)
Q Consensus 79 ~~dg~~i~----~~~~~----~~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~~ 127 (145)
+ ||.... ...+. .....+|++.+.. +... ...+.+.|.|.+.+..
T Consensus 76 ~-~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~---~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 76 R-EPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPG---TEDAGATYTCRVSHVS 131 (139)
T ss_pred E-CCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCC---ccCCCCEEEEEEEcCC
Confidence 5 553311 00111 1234566554431 2221 1114568999998763
No 129
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.21 E-value=6.6e-06 Score=56.42 Aligned_cols=62 Identities=18% Similarity=0.178 Sum_probs=40.9
Q ss_pred CeEEEeeEeccCCCEEEEEccC-CeEee--------------c--ccCceEEeeC---CcEEEcCCCCCCCCCCCCCeEE
Q psy5697 60 RGLELTRQTRYEPSQLGWRFSN-NTVIA--------------Y--VKDLRIALSN---GSLMFPPFPETGFRPDVHSTVY 119 (145)
Q Consensus 60 g~~L~C~a~G~P~P~i~W~~~d-g~~i~--------------~--~~~~~~~~~~---GsL~i~~~~~~~~~~~~d~G~Y 119 (145)
.+.|.|.+.+ +.+.+.|+|.+ |+... . ..+......+ -+|.|.++.++ |+|.|
T Consensus 15 ~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~------Dsg~Y 87 (110)
T cd05899 15 SVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPE------DSAVY 87 (110)
T ss_pred cEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChh------hCEEE
Confidence 3999999998 88999999754 22111 0 0111111111 26999888765 89999
Q ss_pred EEEEEcCCC
Q psy5697 120 RCRASNEAG 128 (145)
Q Consensus 120 ~C~A~N~~G 128 (145)
.|.+.+..|
T Consensus 88 ~Ca~~~~~~ 96 (110)
T cd05899 88 LCASSLGGG 96 (110)
T ss_pred EEEeeCCCC
Confidence 999998644
No 130
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.21 E-value=2.2e-05 Score=53.32 Aligned_cols=73 Identities=11% Similarity=0.084 Sum_probs=45.5
Q ss_pred CeEEEeeEeccC------CCEEEEEccCCe--E-----ee---------cccCceEEee----CCcEEEcCCCCCCCCCC
Q psy5697 60 RGLELTRQTRYE------PSQLGWRFSNNT--V-----IA---------YVKDLRIALS----NGSLMFPPFPETGFRPD 113 (145)
Q Consensus 60 g~~L~C~a~G~P------~P~i~W~~~dg~--~-----i~---------~~~~~~~~~~----~GsL~i~~~~~~~~~~~ 113 (145)
.++|.|.....| ...|.|++.+.. + +. ..++...... +.+|.|.++..+
T Consensus 4 ~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~----- 78 (106)
T cd05877 4 NVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLE----- 78 (106)
T ss_pred cEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChH-----
Confidence 389999987664 467999975321 1 11 0111111111 237999888765
Q ss_pred CCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697 114 VHSTVYRCRASNEAGVI-LSRFVHVK 138 (145)
Q Consensus 114 ~d~G~Y~C~A~N~~G~~-~s~~v~v~ 138 (145)
|+|+|+|.+.|..|.. ..-.+.|+
T Consensus 79 -DsG~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 79 -DYGRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred -HCEEEEEEEEecccceEEEEEEEEE
Confidence 8999999999988875 23344444
No 131
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.20 E-value=3.2e-05 Score=52.54 Aligned_cols=63 Identities=10% Similarity=0.087 Sum_probs=41.9
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEe-------ecccCceEEeeCC---cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVI-------AYVKDLRIALSNG---SLMFPPFPETGFRPDVHSTVYRCRASNEAGV 129 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i-------~~~~~~~~~~~~G---sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~ 129 (145)
+.|.|.+.+.....+.|++.+...+ ...++......+| +|.|..+..+ |+|.|.|.+....-.
T Consensus 15 a~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~------D~G~Y~Cqv~t~p~~ 87 (95)
T cd05881 15 AIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLS------DEGRYFCQLYTDPPQ 87 (95)
T ss_pred EEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcc------cCEEEEEEEEcccCe
Confidence 9999999999888888886543332 1122222222123 5899887665 899999999764433
No 132
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.16 E-value=1.6e-05 Score=53.70 Aligned_cols=74 Identities=15% Similarity=0.194 Sum_probs=50.4
Q ss_pred CeEEEeeEec-cCCCEEEEEccCCeEeecc------------cC--ceE-Ee-eCCcEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697 60 RGLELTRQTR-YEPSQLGWRFSNNTVIAYV------------KD--LRI-AL-SNGSLMFPPFPETGFRPDVHSTVYRCR 122 (145)
Q Consensus 60 g~~L~C~a~G-~P~P~i~W~~~dg~~i~~~------------~~--~~~-~~-~~GsL~i~~~~~~~~~~~~d~G~Y~C~ 122 (145)
.++|.|...- ...-.|.|++.....+... +. .+. .. .+++|.|.+++.+ |+|.|.|.
T Consensus 6 sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~------DsG~Y~c~ 79 (97)
T cd05775 6 SVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKME------DAGSYRAE 79 (97)
T ss_pred eEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchH------HCEEEEEE
Confidence 3899998754 5667899986422111110 01 121 22 2469999998766 89999999
Q ss_pred EEcCCCceEEEEEEEEe
Q psy5697 123 ASNEAGVILSRFVHVKA 139 (145)
Q Consensus 123 A~N~~G~~~s~~v~v~~ 139 (145)
..+..|......++|+.
T Consensus 80 v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 80 INTKNGVTITKEFTLHI 96 (97)
T ss_pred EEcCCCCeEEEEEEEEe
Confidence 99999998888777754
No 133
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.08 E-value=1.6e-05 Score=53.39 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=42.6
Q ss_pred CeEEEeeEecc-CCCEEEEEccCC-e-E--ee-----------cccCceEE-eeC--C--cEEEcCCCCCCCCCCCCCeE
Q psy5697 60 RGLELTRQTRY-EPSQLGWRFSNN-T-V--IA-----------YVKDLRIA-LSN--G--SLMFPPFPETGFRPDVHSTV 118 (145)
Q Consensus 60 g~~L~C~a~G~-P~P~i~W~~~dg-~-~--i~-----------~~~~~~~~-~~~--G--sL~i~~~~~~~~~~~~d~G~ 118 (145)
.+.|.|...+. +...+.|++.+. . + +. ..++.... ... + +|.|.+++.+ |+|.
T Consensus 8 ~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~------D~G~ 81 (105)
T cd00099 8 SVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPE------DSAV 81 (105)
T ss_pred CEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHH------HCEE
Confidence 39999999987 788999987432 1 1 11 01111111 111 3 7999888766 8999
Q ss_pred EEEEEEcCCC
Q psy5697 119 YRCRASNEAG 128 (145)
Q Consensus 119 Y~C~A~N~~G 128 (145)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999999886
No 134
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.07 E-value=2.1e-05 Score=51.90 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=38.1
Q ss_pred eEEEeeEec-cCCCEEEEEccCCeEeecccCceEE-eeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697 61 GLELTRQTR-YEPSQLGWRFSNNTVIAYVKDLRIA-LSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGV 129 (145)
Q Consensus 61 ~~L~C~a~G-~P~P~i~W~~~dg~~i~~~~~~~~~-~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~ 129 (145)
+.|.|.|.| +|...|+|+ +||+.+......... ..+| +|.+.+ + ...+...|+|.|.|+.-.
T Consensus 2 ~~LtC~a~gf~P~~~itW~-kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~---~---~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWF-KNDKEIKDVKYLKEEDANRKTFTVSSTLDFRV---D---RSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEE-ECCEECcCceeeEeeCCCCCEEEEEEEEEEEc---c---cccCCCEEEEEEechhcC
Confidence 579999977 888999997 588876532211111 2233 333332 1 122456899999998554
No 135
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.07 E-value=6.4e-05 Score=50.39 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=25.4
Q ss_pred cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697 99 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK 138 (145)
Q Consensus 99 sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~ 138 (145)
+|.|.+++.+ |+|.|+|.+.|..|. ....+.++
T Consensus 66 sL~I~~v~~~------D~G~Y~C~v~~~~~~-~~~~i~l~ 98 (100)
T cd05713 66 ALRIHNVRAS------DEGLYTCFFQSDGFY-EEATVELK 98 (100)
T ss_pred EEEEEcCChh------hCEEEEEEEecCCcE-EEEEEEEE
Confidence 7999988765 899999999997765 44445444
No 136
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.04 E-value=1.3e-05 Score=47.47 Aligned_cols=61 Identities=20% Similarity=0.226 Sum_probs=40.5
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeeccc------CceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCC
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVK------DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG 128 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~------~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G 128 (145)
+.|.|.+.+.|.+.+.|++ ++....... .........+|.|.++... |.|.|.|.+.+..+
T Consensus 1 ~~l~C~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~------d~g~y~C~~~~~~~ 67 (74)
T cd00096 1 VTLTCLASGPPPPTITWLK-NGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLE------DSGTYTCVASNSAG 67 (74)
T ss_pred CEEEEEecCCCCCcEEEEE-CCEECCCcccEEeccccCcceeEEEEEECccCcc------cCcEEEEEEecCcC
Confidence 4689999998999999985 444322111 0112233446888766543 89999999998873
No 137
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.03 E-value=3.9e-05 Score=52.16 Aligned_cols=62 Identities=13% Similarity=0.194 Sum_probs=39.7
Q ss_pred CeEEEeeEeccC-CCEEEEEccC-CeE---eec--------ccCceEE-eeCC--cEEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697 60 RGLELTRQTRYE-PSQLGWRFSN-NTV---IAY--------VKDLRIA-LSNG--SLMFPPFPETGFRPDVHSTVYRCRA 123 (145)
Q Consensus 60 g~~L~C~a~G~P-~P~i~W~~~d-g~~---i~~--------~~~~~~~-~~~G--sL~i~~~~~~~~~~~~d~G~Y~C~A 123 (145)
.+.|.|.+.+.. ...+.|++.+ |+. +.. .+..... ..++ +|.|.++..+ |+|.|.|.+
T Consensus 17 ~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~------Dsg~Y~Ca~ 90 (106)
T cd04980 17 SATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPE------DAAVYYCQQ 90 (106)
T ss_pred CEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChH------HCEEEEEEE
Confidence 399999998876 6889999753 221 110 0001111 1122 5889888765 899999999
Q ss_pred EcCC
Q psy5697 124 SNEA 127 (145)
Q Consensus 124 ~N~~ 127 (145)
.|..
T Consensus 91 ~~~~ 94 (106)
T cd04980 91 YGTF 94 (106)
T ss_pred eCCC
Confidence 8753
No 138
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.01 E-value=8.1e-05 Score=52.21 Aligned_cols=67 Identities=10% Similarity=0.166 Sum_probs=43.2
Q ss_pred ccCeEEEeeEecc----CCCEEEEEcc--------------CCeEee----cccCceEE-----eeCCcEEEcCCCCCCC
Q psy5697 58 RTRGLELTRQTRY----EPSQLGWRFS--------------NNTVIA----YVKDLRIA-----LSNGSLMFPPFPETGF 110 (145)
Q Consensus 58 ~~g~~L~C~a~G~----P~P~i~W~~~--------------dg~~i~----~~~~~~~~-----~~~GsL~i~~~~~~~~ 110 (145)
++.+.|.|..+.. +..+|+|.+. +|+... ..+++... ..+.+|.|.+++.+
T Consensus 13 G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv~~s-- 90 (116)
T cd05879 13 GSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNLDYT-- 90 (116)
T ss_pred CCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccCCcc--
Confidence 3449999997653 4579999332 233221 01111111 23458999998876
Q ss_pred CCCCCCeEEEEEEEcCCCce
Q psy5697 111 RPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 111 ~~~~d~G~Y~C~A~N~~G~~ 130 (145)
|+|+|+|...|..+..
T Consensus 91 ----D~G~Y~C~v~n~p~~~ 106 (116)
T cd05879 91 ----DNGTFTCDVKNPPDIV 106 (116)
T ss_pred ----cCEEEEEEEEcCCCcC
Confidence 8999999999997754
No 139
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.00 E-value=7.5e-05 Score=49.44 Aligned_cols=62 Identities=11% Similarity=0.052 Sum_probs=38.6
Q ss_pred eEEEeeE-eccCCCEEEEEccCCeEeecccCceEEeeC-----CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697 61 GLELTRQ-TRYEPSQLGWRFSNNTVIAYVKDLRIALSN-----GSLMFPPFPETGFRPDVHSTVYRCRASNEAGV 129 (145)
Q Consensus 61 ~~L~C~a-~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~-----GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~ 129 (145)
+.|.|.+ .+.|.++|+|+ ++|.++............ .+|.|.+- .+.|-..|+|.|.|++=.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~-k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~------~eDdG~~~~C~a~~~~l~ 69 (82)
T cd05883 2 IELNCTAMASKPAATIRWF-KGNKELTGKSTVEETWSRMFTVTSQLMLKVT------KEDDGVPVICLVDHPAVK 69 (82)
T ss_pred EEEEEEecCCCCCCEEEEE-ECCEECcCcccceeccCCCcEEEEEEEEECc------hhhCCCEEEEEEcCcccC
Confidence 5789997 55788999998 477777532111111112 25666542 232566799999998643
No 140
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.99 E-value=0.00015 Score=49.46 Aligned_cols=35 Identities=14% Similarity=0.343 Sum_probs=27.0
Q ss_pred CCcEEEcCCCCCCCCCCCCCeEEEEEEEc-CCCceEEEEEEEE
Q psy5697 97 NGSLMFPPFPETGFRPDVHSTVYRCRASN-EAGVILSRFVHVK 138 (145)
Q Consensus 97 ~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N-~~G~~~s~~v~v~ 138 (145)
+++|.|.+++.+ |+|.|+|...| +.|+ .+..+.+.
T Consensus 62 daSi~i~nl~~~------D~G~Y~C~v~t~P~g~-~~~~~~L~ 97 (99)
T cd05886 62 DGTISLSRLELE------DEGVYICEFATFPTGN-RESQLNLT 97 (99)
T ss_pred cceEEEcCCccc------cCEEEEEEEEeCCCCC-eEEEEEEE
Confidence 479999998766 89999999999 6775 44455444
No 141
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.94 E-value=0.00023 Score=49.64 Aligned_cols=73 Identities=18% Similarity=0.139 Sum_probs=44.8
Q ss_pred CeEEEeeEeccC------------CCEEEEEcc-CCeE---ee----------cccCceEEe------eCCcEEEcCCCC
Q psy5697 60 RGLELTRQTRYE------------PSQLGWRFS-NNTV---IA----------YVKDLRIAL------SNGSLMFPPFPE 107 (145)
Q Consensus 60 g~~L~C~a~G~P------------~P~i~W~~~-dg~~---i~----------~~~~~~~~~------~~GsL~i~~~~~ 107 (145)
.++|.|...... .+.|.|+|. .|+. +. ...++..+. .+-+|.|.+++.
T Consensus 4 ~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~nl~~ 83 (112)
T cd05900 4 SLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITELRS 83 (112)
T ss_pred cEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEeeccc
Confidence 389999976543 469999874 2311 11 111111111 234899998877
Q ss_pred CCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697 108 TGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK 138 (145)
Q Consensus 108 ~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~ 138 (145)
+ |+|+|+|...+..... ..-.+.|.
T Consensus 84 s------DsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 84 N------DSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred c------cCEEEEEEEecCCCCceeEEEEEEE
Confidence 6 8999999999765554 33344444
No 142
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.88 E-value=0.00022 Score=48.33 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=44.0
Q ss_pred eEEEeeEeccC---CCEEEEEccC-C-e--Eee------------cccCceEE-----eeCCcEEEcCCCCCCCCCCCCC
Q psy5697 61 GLELTRQTRYE---PSQLGWRFSN-N-T--VIA------------YVKDLRIA-----LSNGSLMFPPFPETGFRPDVHS 116 (145)
Q Consensus 61 ~~L~C~a~G~P---~P~i~W~~~d-g-~--~i~------------~~~~~~~~-----~~~GsL~i~~~~~~~~~~~~d~ 116 (145)
+.|.|.-.-.+ ..+|+|++.. | . .+. ...+.... ..+++|.|.+++.+ |+
T Consensus 3 v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~s------D~ 76 (100)
T cd05888 3 TRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQA------DE 76 (100)
T ss_pred EEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccc------cc
Confidence 78999875444 4589998743 2 1 111 00011111 12558999998776 89
Q ss_pred eEEEEEEEc-CCCceEEEEEEEE
Q psy5697 117 TVYRCRASN-EAGVILSRFVHVK 138 (145)
Q Consensus 117 G~Y~C~A~N-~~G~~~s~~v~v~ 138 (145)
|.|.|...| +.|.. ...+.++
T Consensus 77 GtY~C~v~~~p~g~~-~~~~~L~ 98 (100)
T cd05888 77 GKYKCRVITFPAGNF-EAELVLT 98 (100)
T ss_pred eEEEEEEEeCCCCCe-eeEEEEE
Confidence 999999999 56664 4455443
No 143
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.81 E-value=0.00026 Score=48.08 Aligned_cols=71 Identities=21% Similarity=0.217 Sum_probs=44.1
Q ss_pred eEEEeeEecc-CCCEEEEEccCC---eEeecc----------c-CceEE-----eeCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697 61 GLELTRQTRY-EPSQLGWRFSNN---TVIAYV----------K-DLRIA-----LSNGSLMFPPFPETGFRPDVHSTVYR 120 (145)
Q Consensus 61 ~~L~C~a~G~-P~P~i~W~~~dg---~~i~~~----------~-~~~~~-----~~~GsL~i~~~~~~~~~~~~d~G~Y~ 120 (145)
+.|.|.-... ...+|+|.|.++ ..+... + ..|.. ..+++|.|.++..+ |+|.|+
T Consensus 3 vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~------D~G~Y~ 76 (96)
T cd05887 3 VTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFS------DIGVYI 76 (96)
T ss_pred EEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCcc------ccEEEE
Confidence 7899997542 345899987532 122100 0 01222 23669999998776 899999
Q ss_pred EEE-EcCCCce-EEEEEEE
Q psy5697 121 CRA-SNEAGVI-LSRFVHV 137 (145)
Q Consensus 121 C~A-~N~~G~~-~s~~v~v 137 (145)
|.. +.+.|+. .+..+.|
T Consensus 77 C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 77 CKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred EEEEeCCCCCeeEEEEEEE
Confidence 996 5568876 4444443
No 144
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.77 E-value=8.5e-05 Score=51.17 Aligned_cols=60 Identities=12% Similarity=0.154 Sum_probs=39.2
Q ss_pred eEEEeeEec--cCCCEEEEEccC-CeE----ee--c----------ccCceEE-eeC----CcEEEcCCCCCCCCCCCCC
Q psy5697 61 GLELTRQTR--YEPSQLGWRFSN-NTV----IA--Y----------VKDLRIA-LSN----GSLMFPPFPETGFRPDVHS 116 (145)
Q Consensus 61 ~~L~C~a~G--~P~P~i~W~~~d-g~~----i~--~----------~~~~~~~-~~~----GsL~i~~~~~~~~~~~~d~ 116 (145)
+.|.|...+ .+.+.+.|++.. |.. +. . .+..... ... -+|.|.+++.+ |+
T Consensus 16 v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~------Ds 89 (116)
T cd04982 16 VTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKE------DS 89 (116)
T ss_pred EEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHH------HC
Confidence 999999988 788999999742 221 10 0 0111111 111 26888888765 89
Q ss_pred eEEEEEEEcC
Q psy5697 117 TVYRCRASNE 126 (145)
Q Consensus 117 G~Y~C~A~N~ 126 (145)
|.|.|.+...
T Consensus 90 g~Y~C~~~~~ 99 (116)
T cd04982 90 ATYYCAYWES 99 (116)
T ss_pred EEEEEEEecC
Confidence 9999999753
No 145
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=97.73 E-value=0.00061 Score=47.03 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=39.7
Q ss_pred eEEEeeEeccC----------CCEEEEEccC-CeEee-------------cccCceEEe-------eCCcEEEcCCCCCC
Q psy5697 61 GLELTRQTRYE----------PSQLGWRFSN-NTVIA-------------YVKDLRIAL-------SNGSLMFPPFPETG 109 (145)
Q Consensus 61 ~~L~C~a~G~P----------~P~i~W~~~d-g~~i~-------------~~~~~~~~~-------~~GsL~i~~~~~~~ 109 (145)
++|.|.....+ ...|.|++.+ ++... ..++ |... .+.+|.|.+++.+
T Consensus 5 V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~g-R~~~~~~~~~~~~asL~I~~l~~s- 82 (110)
T cd05878 5 VLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQG-RVSLPNYPENRGDASLEISRLRSS- 82 (110)
T ss_pred EEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccC-eEEeccCCCCCCcEEEEECCCChh-
Confidence 89999987755 2679999753 22211 1111 2211 1237999988776
Q ss_pred CCCCCCCeEEEEEEEcCCC
Q psy5697 110 FRPDVHSTVYRCRASNEAG 128 (145)
Q Consensus 110 ~~~~~d~G~Y~C~A~N~~G 128 (145)
|+|+|.|......+
T Consensus 83 -----D~G~Y~C~v~~~~~ 96 (110)
T cd05878 83 -----DSGVYRCEVMHGIE 96 (110)
T ss_pred -----hCEEEEEEEEeCCC
Confidence 89999999988543
No 146
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.73 E-value=0.00031 Score=48.59 Aligned_cols=27 Identities=19% Similarity=0.441 Sum_probs=22.4
Q ss_pred CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697 98 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 98 GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~ 130 (145)
.+|.|.+++.+ |+|.|.|.+.|.-+..
T Consensus 80 ~sL~I~~v~~~------D~G~Y~C~v~~~~~~~ 106 (116)
T cd05715 80 ASIVIHNLQFT------DNGTYTCDVKNPPDIV 106 (116)
T ss_pred eEEEEeeCCcc------cCEEEEEEEEeCCCCC
Confidence 37999888766 8999999999986654
No 147
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.72 E-value=0.00024 Score=48.71 Aligned_cols=63 Identities=5% Similarity=-0.104 Sum_probs=37.8
Q ss_pred eEEEeeEec-cCCCE--EEEEccCCeEeecccCc----eEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697 61 GLELTRQTR-YEPSQ--LGWRFSNNTVIAYVKDL----RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 61 ~~L~C~a~G-~P~P~--i~W~~~dg~~i~~~~~~----~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~ 130 (145)
..|.|.+.| .|.++ |+|++ +++.+...... .......+|.+.+- ++.|-..|+|.|.+.++.-
T Consensus 19 ~tL~C~v~g~~P~a~L~i~W~r-G~~~l~~~~~~~~~~~~~~~~stlt~~~~------r~D~g~~~sC~A~l~l~~~ 88 (100)
T cd05755 19 YTLQCDVPGVAPRQNLTVVLLR-GNETLSRQPFGDNTKSPVNAPATITITVD------REDHGANFSCETELDLRPE 88 (100)
T ss_pred EEEEEEEcCcCCCCcEEEEEee-CCEEcccceeccccCCCceeEEEEEEecc------hhhCCcEEEEEEEeccCcc
Confidence 899999865 77787 79985 55665422100 01112235565432 2214448999999997753
No 148
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.70 E-value=0.00028 Score=47.13 Aligned_cols=71 Identities=15% Similarity=0.123 Sum_probs=44.5
Q ss_pred eEEEeeEe-ccCCCEEEEEccCC----eEee-------------cccCceEEeeCC-----cEEEcCCCCCCCCCCCCCe
Q psy5697 61 GLELTRQT-RYEPSQLGWRFSNN----TVIA-------------YVKDLRIALSNG-----SLMFPPFPETGFRPDVHST 117 (145)
Q Consensus 61 ~~L~C~a~-G~P~P~i~W~~~dg----~~i~-------------~~~~~~~~~~~G-----sL~i~~~~~~~~~~~~d~G 117 (145)
+.|.|... ......+.|++.+. ..+. ...+......++ +|.|.+++.+ |+|
T Consensus 19 v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~------DsG 92 (114)
T PF07686_consen 19 VTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPS------DSG 92 (114)
T ss_dssp EEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGG------GEE
T ss_pred EEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcC------cCE
Confidence 99999998 66778999987332 1111 001111222322 5999988766 899
Q ss_pred EEEEEEEcCCCceEEEEEEE
Q psy5697 118 VYRCRASNEAGVILSRFVHV 137 (145)
Q Consensus 118 ~Y~C~A~N~~G~~~s~~v~v 137 (145)
.|.|.....-.......+.|
T Consensus 93 ~Y~C~v~~~~~~~~~~~~~L 112 (114)
T PF07686_consen 93 TYFCQVSTSNEQSFGNGTKL 112 (114)
T ss_dssp EEEEEEEESSEEEEEEEEEE
T ss_pred EEEEEEEECCCCEECCcEEE
Confidence 99999998833333334443
No 149
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.68 E-value=0.00036 Score=48.48 Aligned_cols=27 Identities=22% Similarity=0.473 Sum_probs=22.6
Q ss_pred CCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697 97 NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV 129 (145)
Q Consensus 97 ~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~ 129 (145)
+.+|.|.+++.+ |+|+|.|.+.|..+.
T Consensus 78 ~~sL~I~~v~~~------D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 78 DASILIWQLQPT------DNGTYTCQVKNPPDV 104 (115)
T ss_pred ceEEEEeeCChh------hCEEEEEEEEeCCCC
Confidence 347999988776 899999999998664
No 150
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.66 E-value=0.00028 Score=47.24 Aligned_cols=61 Identities=10% Similarity=0.087 Sum_probs=39.1
Q ss_pred CeEEEeeEecc--CCCEEEEEccCC--eE--ee-c-------cc-CceEEeeCC--cEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697 60 RGLELTRQTRY--EPSQLGWRFSNN--TV--IA-Y-------VK-DLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCR 122 (145)
Q Consensus 60 g~~L~C~a~G~--P~P~i~W~~~dg--~~--i~-~-------~~-~~~~~~~~G--sL~i~~~~~~~~~~~~d~G~Y~C~ 122 (145)
.+.|.|...+. ....+.|++.+. .+ +- . .. +.......+ +|.|.+++.+ |+|+|.|.
T Consensus 8 ~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~------Dsg~Y~C~ 81 (98)
T cd04984 8 TVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTE------DEADYYCQ 81 (98)
T ss_pred CEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChh------hCEEEEEE
Confidence 39999999876 667899987542 11 11 0 00 111111222 6899888765 89999999
Q ss_pred EEcC
Q psy5697 123 ASNE 126 (145)
Q Consensus 123 A~N~ 126 (145)
+.+.
T Consensus 82 ~~~~ 85 (98)
T cd04984 82 VWDS 85 (98)
T ss_pred EccC
Confidence 9865
No 151
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.65 E-value=0.00098 Score=46.96 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=26.7
Q ss_pred CCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697 97 NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK 138 (145)
Q Consensus 97 ~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~ 138 (145)
+-+|.|.+++.+ |+|.|+|...+..... ..-.+.|.
T Consensus 78 ~asL~i~~v~~s------D~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 78 DASLTIVKLRAS------DAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred ceEEEEcccccc------cCEEEEEEEEECCcccEEEEEEEEE
Confidence 348999988766 8999999999887654 33345554
No 152
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.62 E-value=0.00035 Score=45.73 Aligned_cols=62 Identities=23% Similarity=0.373 Sum_probs=35.7
Q ss_pred CeEEEee-EeccCCCEEEEEccCCeEeeccc-CceEEeeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCC
Q psy5697 60 RGLELTR-QTRYEPSQLGWRFSNNTVIAYVK-DLRIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAG 128 (145)
Q Consensus 60 g~~L~C~-a~G~P~P~i~W~~~dg~~i~~~~-~~~~~~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G 128 (145)
.+.+.|. ..|+|+|.|+|+. ++..+.... .......+| +|.+.+ . ...+...++|.|.|..-
T Consensus 16 ~~~~~C~s~~~~P~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~-~-----~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 16 EVTLTCSSSGGYPPPQITWYL-DGGPVVASNTTQSSSPDNGLFTVSSTLTLTP-T-----REDHGKTLTCRASHPAL 85 (89)
T ss_dssp EEEEEEEEEEEBS-EEEEEEE-TTCEECEEEEEEEEETTTTTEEEEEEEEEET-T-----GGGTTEEEEEEEEETTC
T ss_pred EEEEEEEeCCeECCeEEEEEE-CCCceeeeeeeeeeccCCCcceEEEEEEEEc-C-----hHHCCeEEEEEEECCcc
Confidence 3899996 5899999999985 555541110 011122222 344432 1 12256779999999853
No 153
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.57 E-value=0.00085 Score=44.73 Aligned_cols=62 Identities=11% Similarity=0.155 Sum_probs=36.3
Q ss_pred CeEEEeeEecc-CCC-EEEEEccCCeEeeccc--CceEEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcCCC
Q psy5697 60 RGLELTRQTRY-EPS-QLGWRFSNNTVIAYVK--DLRIALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNEAG 128 (145)
Q Consensus 60 g~~L~C~a~G~-P~P-~i~W~~~dg~~i~~~~--~~~~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~~G 128 (145)
.+.|.|.|.|. |++ .|+|+ ++|+...... .......+|+..+. .+... +.+.|.|.+.+..-
T Consensus 16 ~~~L~C~a~gF~P~~i~v~W~-~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~------~~~~ytC~V~H~~~ 84 (93)
T cd07698 16 SLTLSCHATGFYPRDIEVTWL-RDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPE------DKARYSCRVEHSGL 84 (93)
T ss_pred cEEEEEEEEEEeCCCcEEEEE-ECCEECcccccccceEECCCCeEEEEEEEEECCC------CCCEEEEEEEeCCC
Confidence 48999999996 544 89997 4775322111 01122345543332 12221 57899999987643
No 154
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.55 E-value=0.0014 Score=44.52 Aligned_cols=72 Identities=21% Similarity=0.185 Sum_probs=44.6
Q ss_pred CeEEEeeEec-cCCCEEEEEccCCe---Eeec----------ccC-ceEEe-----eCCcEEEcCCCCCCCCCCCCCeEE
Q psy5697 60 RGLELTRQTR-YEPSQLGWRFSNNT---VIAY----------VKD-LRIAL-----SNGSLMFPPFPETGFRPDVHSTVY 119 (145)
Q Consensus 60 g~~L~C~a~G-~P~P~i~W~~~dg~---~i~~----------~~~-~~~~~-----~~GsL~i~~~~~~~~~~~~d~G~Y 119 (145)
++.|.|.-.. ....+|+|.|.++. .+.. .+- .|... .+.+|.|.+++.+ |+|.|
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~------D~G~Y 75 (96)
T cd05889 2 KMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEE------DVGLY 75 (96)
T ss_pred CEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcc------cCEEE
Confidence 4789999642 24678999875431 1211 010 12221 3579999998776 89999
Q ss_pred EEEEEcC-CCceEEEEEEEE
Q psy5697 120 RCRASNE-AGVILSRFVHVK 138 (145)
Q Consensus 120 ~C~A~N~-~G~~~s~~v~v~ 138 (145)
+|...+- .|+. .+.+.|.
T Consensus 76 ~C~~~t~P~g~~-~~~i~~~ 94 (96)
T cd05889 76 CCSLVTYPQGSW-EKVIEVV 94 (96)
T ss_pred EEEEEeCCCCCe-EEEEEEE
Confidence 9999776 5554 4555543
No 155
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.53 E-value=0.00055 Score=45.91 Aligned_cols=70 Identities=14% Similarity=0.080 Sum_probs=41.2
Q ss_pred CCEEEEcCCCCCccC--eEEEeeEeccCCCEEEEEccCCeEeecccCceEEe---eCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697 46 YPFRIKSAPGGNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIAL---SNGSLMFPPFPETGFRPDVHSTVYR 120 (145)
Q Consensus 46 ~P~~i~~p~~~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~---~~GsL~i~~~~~~~~~~~~d~G~Y~ 120 (145)
+|.+...|...+..| ++|.|.+.- +.-.+.|+| +|...... ...... ....+.|.+++.+ |+|+|+
T Consensus 1 kP~l~a~p~~vV~~G~~VTL~C~~~~-~~~~f~l~k-~g~~~~~~-~~~~~~~~~~~a~f~I~~~~~~------~~G~Y~ 71 (94)
T cd05711 1 KPFLSAHPSPVVPSGENVTLQCHSDI-RFDRFILYK-EGRSKPVL-HLYEKHHGGFQASFPLGPVTPA------HAGTYR 71 (94)
T ss_pred CCEEEecCCCccCCCCeEEEEEecCC-CCCEEEEEE-CCCCCCce-ecccccCCeEEEEEEecCCCcc------cCEEEE
Confidence 355555555433333 999998765 567899986 44321100 000000 1126788877665 899999
Q ss_pred EEEE
Q psy5697 121 CRAS 124 (145)
Q Consensus 121 C~A~ 124 (145)
|...
T Consensus 72 C~~~ 75 (94)
T cd05711 72 CYGS 75 (94)
T ss_pred EEEE
Confidence 9975
No 156
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.50 E-value=0.0012 Score=45.95 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.0
Q ss_pred cEEEcCCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697 99 SLMFPPFPETGFRPDVHSTVYRCRASNEA 127 (145)
Q Consensus 99 sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~ 127 (145)
+|.|.+++.+ |+|+|+|......
T Consensus 73 sL~i~nv~~~------D~G~Y~C~v~~g~ 95 (110)
T cd05902 73 SLVLSRLRYS------DSGTYRCEVVLGI 95 (110)
T ss_pred EEEECCCCHH------HCEEEEEEEEECC
Confidence 8999988776 8999999999854
No 157
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.46 E-value=0.0018 Score=43.30 Aligned_cols=64 Identities=20% Similarity=0.157 Sum_probs=39.1
Q ss_pred eEEEeeEeccCC-CEEEEEccCCe---Eee-c-----------ccCceEE----eeCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697 61 GLELTRQTRYEP-SQLGWRFSNNT---VIA-Y-----------VKDLRIA----LSNGSLMFPPFPETGFRPDVHSTVYR 120 (145)
Q Consensus 61 ~~L~C~a~G~P~-P~i~W~~~dg~---~i~-~-----------~~~~~~~----~~~GsL~i~~~~~~~~~~~~d~G~Y~ 120 (145)
++|.|.-..... -.|+|++.++. .+. . .++.... ..+.+|.|.+++.+ |+|.|.
T Consensus 4 vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~------D~G~Y~ 77 (97)
T cd05846 4 VTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLE------DEGCYK 77 (97)
T ss_pred EEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCcee------eeEEEE
Confidence 899998654333 26999875432 111 0 0111111 12347999998776 899999
Q ss_pred EEEEcC-CCce
Q psy5697 121 CRASNE-AGVI 130 (145)
Q Consensus 121 C~A~N~-~G~~ 130 (145)
|...+- .|+.
T Consensus 78 C~~~~~p~g~~ 88 (97)
T cd05846 78 CIFNTFPDGSK 88 (97)
T ss_pred EEEEeCCCCCe
Confidence 997744 5554
No 158
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.37 E-value=0.00085 Score=46.23 Aligned_cols=61 Identities=15% Similarity=0.032 Sum_probs=38.4
Q ss_pred CeEEEeeEecc-CCCEEEEEccC-CeE---ee--------cccCceEE---eeCC--cEEEcCCCCCCCCCCCCCeEEEE
Q psy5697 60 RGLELTRQTRY-EPSQLGWRFSN-NTV---IA--------YVKDLRIA---LSNG--SLMFPPFPETGFRPDVHSTVYRC 121 (145)
Q Consensus 60 g~~L~C~a~G~-P~P~i~W~~~d-g~~---i~--------~~~~~~~~---~~~G--sL~i~~~~~~~~~~~~d~G~Y~C 121 (145)
.+.|.|...+. ....+.|++.+ +.. +- ..++.... ...+ +|.|.++..+ |+|.|.|
T Consensus 16 ~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~------Dsg~Y~C 89 (116)
T cd07706 16 EVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLE------DSAKYFC 89 (116)
T ss_pred CEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHH------HCEEEEE
Confidence 39999998764 56789999753 221 10 01111111 1122 6899888665 8999999
Q ss_pred EEEcC
Q psy5697 122 RASNE 126 (145)
Q Consensus 122 ~A~N~ 126 (145)
.+.+.
T Consensus 90 ~~~~~ 94 (116)
T cd07706 90 ALSTL 94 (116)
T ss_pred EEECC
Confidence 99853
No 159
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.35 E-value=0.0016 Score=43.43 Aligned_cols=64 Identities=9% Similarity=0.109 Sum_probs=40.2
Q ss_pred CeEEEeeEec-cCCCEEEEEccCCe----Ee-------ecccCceEEe---eCC--cEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697 60 RGLELTRQTR-YEPSQLGWRFSNNT----VI-------AYVKDLRIAL---SNG--SLMFPPFPETGFRPDVHSTVYRCR 122 (145)
Q Consensus 60 g~~L~C~a~G-~P~P~i~W~~~dg~----~i-------~~~~~~~~~~---~~G--sL~i~~~~~~~~~~~~d~G~Y~C~ 122 (145)
.++|.|.... .....+.|++.+.. .+ ...++..... .++ +|.|.+++.+ |+|.|.|.
T Consensus 9 ~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~ 82 (98)
T cd05716 9 SVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKE------DAGWYWCG 82 (98)
T ss_pred eEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHH------HCEEEEEE
Confidence 3899999765 46778999975421 11 0111111221 133 6888888765 89999999
Q ss_pred EEcCCCc
Q psy5697 123 ASNEAGV 129 (145)
Q Consensus 123 A~N~~G~ 129 (145)
+.+....
T Consensus 83 ~~~~~~~ 89 (98)
T cd05716 83 VGDDGDQ 89 (98)
T ss_pred cccCCCc
Confidence 9876543
No 160
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.34 E-value=0.0027 Score=42.72 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=37.2
Q ss_pred eEEEeeEec-cCCC-EEEEEccCCeEeecc--cCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697 61 GLELTRQTR-YEPS-QLGWRFSNNTVIAYV--KDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA 127 (145)
Q Consensus 61 ~~L~C~a~G-~P~P-~i~W~~~dg~~i~~~--~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~ 127 (145)
++|.|.|.| +|.. +++|+ +||+.+... ........+|+..+...-.- ... ....|.|.+.-..
T Consensus 17 ~~L~C~~~gFyP~~i~v~W~-~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~--~~~-~~~~ysC~V~H~~ 83 (94)
T cd05766 17 HLLVCHVWGFYPPEITVKWF-KNGQEETEGVVSTELIPNGDWTYQILVMLET--TPS-RGDTYTCVVEHSS 83 (94)
T ss_pred eEEEEEEeeecCCCCEEEEE-ECCeecCCCceecceEECCCCcEEEEEEEEE--cCC-CCCEEEEEEEeCC
Confidence 899999999 6655 78997 588876532 11112234555554321110 011 3568999997654
No 161
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.30 E-value=0.0017 Score=41.54 Aligned_cols=62 Identities=13% Similarity=0.272 Sum_probs=35.1
Q ss_pred eEEEeeEecc-CC-CEEEEEccCCeEeecccC-c-eEEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcC
Q psy5697 61 GLELTRQTRY-EP-SQLGWRFSNNTVIAYVKD-L-RIALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNE 126 (145)
Q Consensus 61 ~~L~C~a~G~-P~-P~i~W~~~dg~~i~~~~~-~-~~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~ 126 (145)
+.|.|.|.|. |+ ..|+|++ ||+++..... . .....+|+..+.. +... ...+...|.|.+...
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k-~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~---~~~~~~~~tC~V~H~ 70 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLR-NGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSAS---TWESGDTYTCQVTHE 70 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEE-CCEECCCCEEECceEECCCCCEEEEEEEEEccc---cCCCCCEEEEEEEEc
Confidence 6799999996 54 6899974 8886432110 0 1122455444322 1111 111457899999765
No 162
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.15 E-value=0.0029 Score=43.11 Aligned_cols=60 Identities=12% Similarity=0.110 Sum_probs=37.5
Q ss_pred eEEEeeEeccC-CCEEEEEccCCe----Eee-----c------------ccCceE-EeeCC---cEEEcCCCCCCCCCCC
Q psy5697 61 GLELTRQTRYE-PSQLGWRFSNNT----VIA-----Y------------VKDLRI-ALSNG---SLMFPPFPETGFRPDV 114 (145)
Q Consensus 61 ~~L~C~a~G~P-~P~i~W~~~dg~----~i~-----~------------~~~~~~-~~~~G---sL~i~~~~~~~~~~~~ 114 (145)
++|.|.+.+.. ...+.|++.+.. .+. . .++... ...++ +|.|.++..+
T Consensus 9 vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~------ 82 (107)
T cd07700 9 VKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKPE------ 82 (107)
T ss_pred EEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCHH------
Confidence 99999998754 468999975432 100 0 011111 11222 5899888665
Q ss_pred CCeEEEEEEEcC
Q psy5697 115 HSTVYRCRASNE 126 (145)
Q Consensus 115 d~G~Y~C~A~N~ 126 (145)
|+|.|.|...+.
T Consensus 83 Dsg~YyCa~~~~ 94 (107)
T cd07700 83 DSGTYFCMTVGS 94 (107)
T ss_pred HCEEEEEeEcCC
Confidence 899999998744
No 163
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=97.12 E-value=0.00068 Score=53.78 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=40.1
Q ss_pred CCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697 71 EPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA 127 (145)
Q Consensus 71 P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~ 127 (145)
..|++.|...||..+...+ ...+-+.|.|++.++.++ ++|.|+|..+-..
T Consensus 11 iDP~y~W~GP~g~~l~gn~-~~nIT~TG~L~~~~F~es------mSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNS-YVNITETGKLMFKNFQES------MSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCC-eEEEccCceEEeeccccc------cCCceEEEEEEEe
Confidence 4699999988888886543 346778999999988765 8999999988654
No 164
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.07 E-value=0.0061 Score=41.10 Aligned_cols=59 Identities=12% Similarity=0.165 Sum_probs=35.4
Q ss_pred eEEEeeEec-cCC-CEEEEEccCCeEeecccC--ceEEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcC
Q psy5697 61 GLELTRQTR-YEP-SQLGWRFSNNTVIAYVKD--LRIALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNE 126 (145)
Q Consensus 61 ~~L~C~a~G-~P~-P~i~W~~~dg~~i~~~~~--~~~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~ 126 (145)
.+|.|.|.| +|. -+++|+ +||+.+...-. ......+|+..+.. +.+. +...|.|.+.=+
T Consensus 18 ~tL~C~a~gFyP~~I~v~W~-~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~~------~~~~ytC~V~H~ 83 (94)
T cd05767 18 NTLICFVDNFFPPVLNVTWL-KNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTPE------EGDIYSCIVEHW 83 (94)
T ss_pred eEEEEEEEEEECCcCEEEEE-ECCeEccCceEEeeeEeCCCCcEEEEEEEEEECC------CCCeEEEEEEeC
Confidence 799999999 664 468997 58887643110 11223455444321 1111 356899999654
No 165
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=96.99 E-value=0.0078 Score=41.81 Aligned_cols=78 Identities=9% Similarity=-0.003 Sum_probs=42.8
Q ss_pred eEEEeeEec-cCC-CEEEEEccCCeEeecccCceEEeeC-CcEEEc---CCCCCCCCCCCCCe-EEEEEEEcCCC-ceEE
Q psy5697 61 GLELTRQTR-YEP-SQLGWRFSNNTVIAYVKDLRIALSN-GSLMFP---PFPETGFRPDVHST-VYRCRASNEAG-VILS 132 (145)
Q Consensus 61 ~~L~C~a~G-~P~-P~i~W~~~dg~~i~~~~~~~~~~~~-GsL~i~---~~~~~~~~~~~d~G-~Y~C~A~N~~G-~~~s 132 (145)
++|.|.|.| +|+ -+|+|+ +||+.+........-..+ |+..+. .+... +.|.| .|.|.+....- ..+.
T Consensus 24 ~tL~C~a~gF~P~~i~v~W~-kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~----~~d~~~~ytC~V~H~~l~~p~~ 98 (111)
T cd05772 24 VNFTCSAHGFSPRDITVKWL-KNGNELSAEQPNITPEGDSVSYNVTSTVQVKLT----EDDVHSQVTCEVQHRTLQAPLR 98 (111)
T ss_pred EEEEEEEeeEeCCCCEEEEE-ECCEECcccccceeeCCCCCcEEEEEEEEEECc----cccccCceEEEEEeCCCCCCeE
Confidence 899999988 454 489997 588887532111111223 233321 11222 11344 49999988743 3355
Q ss_pred EEEEEEeccCC
Q psy5697 133 RFVHVKADSRI 143 (145)
Q Consensus 133 ~~v~v~~~~~~ 143 (145)
+.+.+.-..+.
T Consensus 99 ~~~~~~~~~~~ 109 (111)
T cd05772 99 GTYNLSQALRV 109 (111)
T ss_pred EEEEcccEEEc
Confidence 55555544433
No 166
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.93 E-value=0.0062 Score=41.12 Aligned_cols=60 Identities=12% Similarity=0.155 Sum_probs=35.3
Q ss_pred eEEEeeE-eccCCCEEEEEccCCeEeecccCceEEeeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697 61 GLELTRQ-TRYEPSQLGWRFSNNTVIAYVKDLRIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGV 129 (145)
Q Consensus 61 ~~L~C~a-~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~ 129 (145)
..+.|.+ .|+|.++|+|++.-...... ......+| +|.+.+- .+.|--.|+|+|.|..-.
T Consensus 18 ~va~C~s~~gkP~a~ItW~~~~~~~~~~---~~~~~~~g~~tv~S~l~~~p~------~~d~G~~~tC~v~h~~l~ 84 (95)
T cd05719 18 TVATCVSANGKPPATISWETTLGGEAET---QSKENPNGTVTVTSEYRLVPS------REANGKELTCVVSHPTLQ 84 (95)
T ss_pred EEEEEECCCCcCCCEEEEEeCCCCccee---EeecCCCCCEEEEEEEEEecC------HHHCCCEEEEEEeCcccC
Confidence 7899997 79999999998521111110 11122344 3444332 121445799999998644
No 167
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.90 E-value=0.0046 Score=41.96 Aligned_cols=63 Identities=11% Similarity=0.289 Sum_probs=37.6
Q ss_pred eEEEeeEec-cC-CCEEEEEccCCeEeeccc--CceEEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcCC
Q psy5697 61 GLELTRQTR-YE-PSQLGWRFSNNTVIAYVK--DLRIALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNEA 127 (145)
Q Consensus 61 ~~L~C~a~G-~P-~P~i~W~~~dg~~i~~~~--~~~~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~~ 127 (145)
+.|.|.|.| +| .-+|+|+ +||+.+.... .......+|+..+.. +..+++ .+...|.|.+.-+.
T Consensus 20 ~~L~C~~~gfyP~~i~v~W~-~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w---~~~~~~sC~V~H~~ 89 (100)
T cd07699 20 ATLVCLINDFYPGFATVQWK-VDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDW---NKHKVYTCEVTHEG 89 (100)
T ss_pred cEEEEEEEeEECCCCEEEEE-ECCEECcccEeccccEECCCCCEEEEEEEEEcHHHh---CCCCeEEEEEEecC
Confidence 899999999 66 4578997 5888864211 111223466555432 122211 13568999997663
No 168
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.89 E-value=0.0053 Score=38.55 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=34.0
Q ss_pred eEEEeeEeccCCC--EEEEEccCC-eE---eec------------ccCceEEee---CC--cEEEcCCCCCCCCCCCCCe
Q psy5697 61 GLELTRQTRYEPS--QLGWRFSNN-TV---IAY------------VKDLRIALS---NG--SLMFPPFPETGFRPDVHST 117 (145)
Q Consensus 61 ~~L~C~a~G~P~P--~i~W~~~dg-~~---i~~------------~~~~~~~~~---~G--sL~i~~~~~~~~~~~~d~G 117 (145)
+.|.|...+...+ .+.|++... .. +.. ..+...... .+ +|.|.+++.+ |+|
T Consensus 2 v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~------D~G 75 (81)
T smart00406 2 VTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVE------DTG 75 (81)
T ss_pred EEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHH------HCE
Confidence 6799998776654 899986431 11 110 011111111 22 6889888765 899
Q ss_pred EEEEE
Q psy5697 118 VYRCR 122 (145)
Q Consensus 118 ~Y~C~ 122 (145)
.|.|.
T Consensus 76 ~Y~C~ 80 (81)
T smart00406 76 TYYCA 80 (81)
T ss_pred EEEEc
Confidence 99995
No 169
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=96.83 E-value=0.015 Score=39.02 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=37.2
Q ss_pred cCeEEEeeEec--cCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697 59 TRGLELTRQTR--YEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNE 126 (145)
Q Consensus 59 ~g~~L~C~a~G--~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~ 126 (145)
..++|.|.+.. .|.|.|+|+...++.... ......+|.+..+... |+|++.|..+-.
T Consensus 15 ~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~-----~~~~~ktL~~~qv~~q------dSG~WtC~V~~~ 73 (88)
T cd07694 15 TNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI-----LNQDKKTLNLVQLGPN------DSGTWDCIVSVN 73 (88)
T ss_pred CcEEEEEecCCCCCCCccEEEeCCCCcccee-----ccCCccEEEeceeCcc------cCCEEEEEEEEC
Confidence 34899999844 445599997544332211 1123447888777654 899999999644
No 170
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.78 E-value=0.0056 Score=41.46 Aligned_cols=59 Identities=12% Similarity=0.237 Sum_probs=34.0
Q ss_pred eEEEeeE-eccCCCEEEEEccCCeEeecccCceEEeeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCC
Q psy5697 61 GLELTRQ-TRYEPSQLGWRFSNNTVIAYVKDLRIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAG 128 (145)
Q Consensus 61 ~~L~C~a-~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G 128 (145)
..+.|.+ .|.|.++|+|++..+..... ......+| .|.+.+- .+.|--.|.|.|+|..-
T Consensus 18 ~va~C~s~~gkPaa~IsW~~~~~g~~~~---~~~~~~~gt~tv~S~l~~~P~------~~d~Gk~ltC~v~h~al 83 (95)
T cd07703 18 PVAKCVSANGRPPARISWSSTLGGNANT---TSKENGDGTVTVTSEYSLVPT------PEANGKEVTCKVEHETL 83 (95)
T ss_pred EEEEEEcCCCCCCcEEEEEcCCCCCeeE---EEEeCCCCCEEEEEEEEEecC------HHHCCCEEEEEEeCccc
Confidence 7899985 69999999998531111110 11122334 3444321 22245579999999853
No 171
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.77 E-value=0.0045 Score=41.87 Aligned_cols=65 Identities=8% Similarity=0.159 Sum_probs=36.3
Q ss_pred CeEEEeeEecc--CC-CEEEEEccCCeEeecccCceEEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcCC
Q psy5697 60 RGLELTRQTRY--EP-SQLGWRFSNNTVIAYVKDLRIALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNEA 127 (145)
Q Consensus 60 g~~L~C~a~G~--P~-P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~~ 127 (145)
.++|.|.|+|. |+ -.|+|++.++..............+|+..+.. +.++++ .+.-.|.|.+.-+.
T Consensus 16 ~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w---~~g~~ysC~V~H~~ 86 (96)
T cd07696 16 SVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDW---ISGDTFQCKVTHPD 86 (96)
T ss_pred CeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHc---cCCCcEEEEEECCC
Confidence 38999999999 54 36899864344332111112334566655543 222211 02346999997663
No 172
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=96.73 E-value=0.0097 Score=40.42 Aligned_cols=60 Identities=15% Similarity=0.251 Sum_probs=37.4
Q ss_pred eEEEeeEeccCCCEEEEEccC-C---eE--ee-ccc------------CceEE--eeCC--cEEEcCCCCCCCCCCCCCe
Q psy5697 61 GLELTRQTRYEPSQLGWRFSN-N---TV--IA-YVK------------DLRIA--LSNG--SLMFPPFPETGFRPDVHST 117 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~d-g---~~--i~-~~~------------~~~~~--~~~G--sL~i~~~~~~~~~~~~d~G 117 (145)
++|.|...+.-...+.|++.+ | .+ +- ... ..+.. .... +|.|.+++.+ |+|
T Consensus 9 vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~s------Dsg 82 (104)
T cd05720 9 VELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKE------NEG 82 (104)
T ss_pred EEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHH------HCE
Confidence 899999876656779999754 3 11 11 000 01111 1122 6899888765 899
Q ss_pred EEEEEEEcC
Q psy5697 118 VYRCRASNE 126 (145)
Q Consensus 118 ~Y~C~A~N~ 126 (145)
+|.|...+.
T Consensus 83 tY~Ca~~~~ 91 (104)
T cd05720 83 YYFCSVASN 91 (104)
T ss_pred EEEEEEccC
Confidence 999998753
No 173
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=96.66 E-value=0.0087 Score=45.41 Aligned_cols=74 Identities=12% Similarity=0.229 Sum_probs=46.0
Q ss_pred CeEEEeeE-eccCCCEEEEEccCCeEee----------cccCceEEe-----eCCcEEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697 60 RGLELTRQ-TRYEPSQLGWRFSNNTVIA----------YVKDLRIAL-----SNGSLMFPPFPETGFRPDVHSTVYRCRA 123 (145)
Q Consensus 60 g~~L~C~a-~G~P~P~i~W~~~dg~~i~----------~~~~~~~~~-----~~GsL~i~~~~~~~~~~~~d~G~Y~C~A 123 (145)
.+.|.|.- .+...++|+|+|.++.... +..+ +..+ .+-+|.|.++..+ |+|.|.|..
T Consensus 32 ~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~-Rve~mS~s~~~StItIknVt~s------DeGcY~C~F 104 (189)
T PHA02987 32 NVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKN-KIEYLSKSFNESTILIKNVSLK------DNGCYTCIF 104 (189)
T ss_pred CEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcC-eEEEeccCCCcceEEEEeCChh------hCeEEEEEE
Confidence 39999997 4778899999875432211 1111 2211 3458999988766 899999987
Q ss_pred EcC-CC-ce-EEEEEEEEec
Q psy5697 124 SNE-AG-VI-LSRFVHVKAD 140 (145)
Q Consensus 124 ~N~-~G-~~-~s~~v~v~~~ 140 (145)
.-- .| .. ....++|.+.
T Consensus 105 ~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 105 NTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EecCCCCCceeEEEEEEEch
Confidence 432 45 22 3335555543
No 174
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=96.65 E-value=0.0097 Score=41.31 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=18.6
Q ss_pred cEEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697 99 SLMFPPFPETGFRPDVHSTVYRCRASNE 126 (145)
Q Consensus 99 sL~i~~~~~~~~~~~~d~G~Y~C~A~N~ 126 (145)
+|.|.+++.+ |+|+|.|.....
T Consensus 81 sL~I~~l~~~------Dsg~Y~C~~~~~ 102 (119)
T cd05712 81 SLLISDAQPE------DSGKYFFRVELG 102 (119)
T ss_pred EEEEccCChh------hCeEEEEEEEcC
Confidence 7999988766 899999988664
No 175
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=96.55 E-value=0.0098 Score=41.34 Aligned_cols=61 Identities=13% Similarity=0.160 Sum_probs=37.1
Q ss_pred CeEEEeeEeccC--CCEEEEEccC-C-eE--ee---c----------ccCceEE-eeC--C--cEEEcCCCCCCCCCCCC
Q psy5697 60 RGLELTRQTRYE--PSQLGWRFSN-N-TV--IA---Y----------VKDLRIA-LSN--G--SLMFPPFPETGFRPDVH 115 (145)
Q Consensus 60 g~~L~C~a~G~P--~P~i~W~~~d-g-~~--i~---~----------~~~~~~~-~~~--G--sL~i~~~~~~~~~~~~d 115 (145)
.++|.|...+.- ...+.|++.. | .+ +- . .++.... ... . +|.|.++..+ |
T Consensus 14 ~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~------D 87 (117)
T cd04981 14 SLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPE------D 87 (117)
T ss_pred CEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHH------H
Confidence 399999987644 5679999753 2 22 10 0 0111111 111 2 5888887766 8
Q ss_pred CeEEEEEEEcC
Q psy5697 116 STVYRCRASNE 126 (145)
Q Consensus 116 ~G~Y~C~A~N~ 126 (145)
+|+|.|.+...
T Consensus 88 sa~YyCa~~~~ 98 (117)
T cd04981 88 TAVYYCARGLG 98 (117)
T ss_pred CEEEEEEEEcC
Confidence 99999998753
No 176
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=96.42 E-value=0.022 Score=38.30 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=35.9
Q ss_pred eEEEeeEec-cCC-CEEEEEccCCeEeeccc-CceEEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcC
Q psy5697 61 GLELTRQTR-YEP-SQLGWRFSNNTVIAYVK-DLRIALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNE 126 (145)
Q Consensus 61 ~~L~C~a~G-~P~-P~i~W~~~dg~~i~~~~-~~~~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~ 126 (145)
.+|.|.|.| +|+ -.|+|+ +||+.+.... .......+|+..+.. +... +...|.|.+.=.
T Consensus 18 ~~L~C~a~gFyP~~i~v~W~-~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~------~~~~ysC~V~H~ 82 (93)
T cd05770 18 NVLNCYVTGFHPPDIEIRLL-KNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPT------KGDEYACRVRHN 82 (93)
T ss_pred eEEEEEEEEEeCCCCEEEEE-ECCEECCCcEECcEEECCCCCEEEEEEEEECCC------CCCeEEEEEEEC
Confidence 589999999 554 367997 5998875211 111234456655432 2222 466799999653
No 177
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.35 E-value=0.0085 Score=40.87 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=19.9
Q ss_pred CeEEEeeEeccCCC--EEEEEccCCeEee
Q psy5697 60 RGLELTRQTRYEPS--QLGWRFSNNTVIA 86 (145)
Q Consensus 60 g~~L~C~a~G~P~P--~i~W~~~dg~~i~ 86 (145)
.+.|.|.|+|.-++ .++|+ +||+++.
T Consensus 18 ~~tL~C~a~gFyP~~i~v~W~-k~g~~~~ 45 (102)
T cd05768 18 TATLTCLVKGFSPSDIFVKWL-QNGQPLS 45 (102)
T ss_pred ceEEEEEEeeEeCCCCEEEEE-ECCEECC
Confidence 39999999995444 56997 5888764
No 178
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.27 E-value=0.02 Score=36.62 Aligned_cols=46 Identities=17% Similarity=0.240 Sum_probs=29.3
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEc
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASN 125 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N 125 (145)
+.|.|.+. -+|+|++ |..+.... +-+|-+....+. ..|.|+|.++|
T Consensus 9 V~L~C~~~----tsi~W~k--G~~~~~~~-------~~tlnLGs~~~D------PRG~Y~C~~s~ 54 (69)
T cd07691 9 VFLKCNGA----TNITWKK--GKEILEVS-------NTLLDLGSRIND------PRGTYSCKESE 54 (69)
T ss_pred EEEEecCC----CcEEEec--Cccccccc-------ccEEeccCcccC------CCcceEecCcc
Confidence 89999762 5599975 55543221 334444433222 58999999988
No 179
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=96.17 E-value=0.027 Score=37.83 Aligned_cols=65 Identities=9% Similarity=0.167 Sum_probs=37.0
Q ss_pred eEEEeeEec-cCC-CEEEEEccCCeEeecc-cC-ceEEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697 61 GLELTRQTR-YEP-SQLGWRFSNNTVIAYV-KD-LRIALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNEAGV 129 (145)
Q Consensus 61 ~~L~C~a~G-~P~-P~i~W~~~dg~~i~~~-~~-~~~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~~G~ 129 (145)
+.|.|.|.| +|. -+|+|+ +||+.+... .. ......+|+..+.. +..+++ .+...|.|.+..+..+
T Consensus 17 ~~L~C~a~gFyP~~I~vtW~-~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w---~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 17 IQLLCLISGYTPGTIEVEWL-VDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDW---KSGKTYTCKVTHQGTT 88 (94)
T ss_pred EEEEEEEEeEECCCCEEEEE-ECCEECcCceeecccEECCCCcEEEEEEEEEchHHh---cCCCeEEEEEEECCee
Confidence 889999999 564 478997 588875321 10 11223344443322 112211 1356899999876544
No 180
>PHA02633 hypothetical protein; Provisional
Probab=95.95 E-value=0.019 Score=36.05 Aligned_cols=37 Identities=14% Similarity=0.173 Sum_probs=26.3
Q ss_pred eCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697 96 SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK 138 (145)
Q Consensus 96 ~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~ 138 (145)
..+.|.|.|+..+ |+|.|.|+.+|+-=.. .+..+.|.
T Consensus 16 ~~~nLwilpa~~s------DSGiYiC~~rn~t~c~~~si~l~V~ 53 (63)
T PHA02633 16 NCNNMLILNPTQS------DSGIYMCITKNETYSDMMKFDLCIC 53 (63)
T ss_pred ccccEEEeccccc------cCcEEEEEEcCCCeeEEEEEEEEEe
Confidence 3458999988765 8999999999874333 44455554
No 181
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=95.86 E-value=0.037 Score=35.78 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=35.9
Q ss_pred eEEEeeEec-cCCC-EEEEEccCCeEeecccCce--EEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcCCC
Q psy5697 61 GLELTRQTR-YEPS-QLGWRFSNNTVIAYVKDLR--IALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNEAG 128 (145)
Q Consensus 61 ~~L~C~a~G-~P~P-~i~W~~~dg~~i~~~~~~~--~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~~G 128 (145)
+.|.|.|.| +|.. .|+|+ +||..+....... ....+|+..+.. +... +...|.|.+..+..
T Consensus 11 ~~L~C~v~~f~P~~i~v~W~-~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~------~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 11 VTLTCLVSGFYPKDITVTWL-KNGKEVTEGVETTPPPPNSDGTYSVTSSLTVTWN------SGDEYSCRVTHESL 78 (83)
T ss_dssp EEEEEEEEEEBSSTEEEEEE-ETTEEETTTEEEEEEEEETTSEEEEEEEEEEETT------TTGGEEEEEEETTS
T ss_pred EEEEEEEEEEECCCcEEEEE-eccceeeeeeeecccccccccceeeeEEEEecCC------CCCEEEEEEEECCC
Confidence 899999998 5544 69997 5787764321111 113456433321 1111 35579999987643
No 182
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=95.80 E-value=0.046 Score=38.22 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=19.8
Q ss_pred eEEEeeEec-cCCC-EEEEEccCCeEee
Q psy5697 61 GLELTRQTR-YEPS-QLGWRFSNNTVIA 86 (145)
Q Consensus 61 ~~L~C~a~G-~P~P-~i~W~~~dg~~i~ 86 (145)
+.|.|.|.| +|.. +|+|+ +||+.+.
T Consensus 21 ~tL~Cla~gFyP~~I~V~W~-kng~~l~ 47 (115)
T cd05769 21 ATLVCLATGFYPDHVSLSWK-VNGKEVT 47 (115)
T ss_pred cEEEEEEEeEeCCCcEEEEE-ECCEECC
Confidence 899999999 4553 78997 4887765
No 183
>KOG1480|consensus
Probab=95.73 E-value=0.0038 Score=55.95 Aligned_cols=70 Identities=21% Similarity=0.166 Sum_probs=51.6
Q ss_pred eEEEee-EeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697 61 GLELTR-QTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK 138 (145)
Q Consensus 61 ~~L~C~-a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~ 138 (145)
..+.|+ ..|.|.-.++|+ ++|..++... ......++.|.+.++... |+|.|+|+|.|-++.-.+-.+.|.
T Consensus 147 ~~l~cr~pe~~paae~~w~-k~e~~~~pd~-n~~~~~d~~li~~~arls------d~~nytc~a~ni~~~r~~~~~~v~ 217 (909)
T KOG1480|consen 147 LQLPCRPPEGDPKAEVEWL-KNEVVIDPDA-NVIRASDHNLIISQARLS------DSGNYTCEATNIVAKRKSDPATVQ 217 (909)
T ss_pred ccccccCcccchhhhhhcc-ccCCCCCccc-cchhhhcCCccccchhhh------hcccceeeeehhhccccccceEEE
Confidence 567777 699999999997 5776665422 223455778998877654 899999999999998755544443
No 184
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=95.64 E-value=0.019 Score=38.86 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=19.5
Q ss_pred eEEEeeEec-cCCC-EEEEEccCCeEee
Q psy5697 61 GLELTRQTR-YEPS-QLGWRFSNNTVIA 86 (145)
Q Consensus 61 ~~L~C~a~G-~P~P-~i~W~~~dg~~i~ 86 (145)
++|.|.|+| +|.. +|+|+ +||+.+.
T Consensus 19 ~tL~C~a~gFyP~~I~v~W~-kng~~~~ 45 (96)
T cd07697 19 GIYLCLLENFFPDVIQVHWR-EGNSPSI 45 (96)
T ss_pred EEEEEEEEEEeCCCeEEEEE-ECCEECc
Confidence 899999999 5643 57996 5888754
No 185
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.60 E-value=0.083 Score=36.08 Aligned_cols=64 Identities=8% Similarity=0.108 Sum_probs=35.6
Q ss_pred CeEEEeeEec-c-CC-CEEEEEccCCeEeecccCceEEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcCCC
Q psy5697 60 RGLELTRQTR-Y-EP-SQLGWRFSNNTVIAYVKDLRIALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNEAG 128 (145)
Q Consensus 60 g~~L~C~a~G-~-P~-P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~~G 128 (145)
.++|.|.+.| + |. -.|+|. .||+. ...........+|+..+.. +..+++. ....|.|.+..+.-
T Consensus 21 ~atLtClV~~f~~P~~i~V~W~-~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~---~g~~ytC~V~H~~l 90 (99)
T cd04986 21 SASLTCTLSGLRDPEGAVFTWT-PSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWN---KGEPFACTVTHPEG 90 (99)
T ss_pred ccEEEEEEeccCCCCCeEEEEE-ECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhc---CCCeEEEEEECCCc
Confidence 3899999999 4 53 479997 46554 2111111223466544443 2233221 12359999987743
No 186
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=95.51 E-value=0.051 Score=34.41 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=28.4
Q ss_pred eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA 127 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~ 127 (145)
++|.|...+.. |.|.+ |++.+.. .+..+...+.. .+.|.|+|.+.+..
T Consensus 10 VtlTCP~~~~~---i~W~~-n~~~~~g--------~~~~~~~~~~~-------e~~G~Y~C~~~~~~ 57 (65)
T cd07692 10 VTVTCPLSGDD---IKWKK-NDQVSQG--------SDEKYLSLNHF-------SSSGYYHCTADNAN 57 (65)
T ss_pred EEEECCCCCCC---ceEEe-CCccCCC--------CCceEEeeccC-------CCCceEEEEeCCCc
Confidence 89999754322 99975 5443321 11233333332 26999999997654
No 187
>PHA03376 BARF1; Provisional
Probab=95.18 E-value=0.12 Score=39.69 Aligned_cols=63 Identities=16% Similarity=0.090 Sum_probs=38.7
Q ss_pred cCeEEEeeEe---ccCCCEEEEEcc---CCeE-ee-----------cccCceE-EeeCC--cEEEcCCCCCCCCCCCCCe
Q psy5697 59 TRGLELTRQT---RYEPSQLGWRFS---NNTV-IA-----------YVKDLRI-ALSNG--SLMFPPFPETGFRPDVHST 117 (145)
Q Consensus 59 ~g~~L~C~a~---G~P~P~i~W~~~---dg~~-i~-----------~~~~~~~-~~~~G--sL~i~~~~~~~~~~~~d~G 117 (145)
+.++|.|.-. -.+.-.|+|+|. +.+. +. ...+... +..+| +|.|.+++.+ |.|
T Consensus 27 Eda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lS------DdG 100 (221)
T PHA03376 27 ERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANIS------HDG 100 (221)
T ss_pred CcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeec------CCc
Confidence 3489999843 226778999872 1111 11 1111122 22334 7999998877 899
Q ss_pred EEEEEEEcCC
Q psy5697 118 VYRCRASNEA 127 (145)
Q Consensus 118 ~Y~C~A~N~~ 127 (145)
.|+|.-+-.-
T Consensus 101 tY~C~fQkge 110 (221)
T PHA03376 101 NYLCRMKLGE 110 (221)
T ss_pred eEEEEEEcCC
Confidence 9999987653
No 188
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=94.98 E-value=0.11 Score=34.96 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=18.6
Q ss_pred CeEEEeeEec-cCC-CEEEEEccCCeE
Q psy5697 60 RGLELTRQTR-YEP-SQLGWRFSNNTV 84 (145)
Q Consensus 60 g~~L~C~a~G-~P~-P~i~W~~~dg~~ 84 (145)
.++|.|.|.| +|. -+|+|+ +||+.
T Consensus 18 ~~~L~C~a~gFyP~~i~vtW~-k~g~~ 43 (95)
T cd04985 18 SVTLGCLATGFLPEPVTFTWN-SGSNS 43 (95)
T ss_pred cEEEEEEEeeEECCCcEEEEe-ECCEE
Confidence 3899999999 553 367996 58876
No 189
>KOG4597|consensus
Probab=94.95 E-value=0.045 Score=46.95 Aligned_cols=64 Identities=13% Similarity=0.072 Sum_probs=44.3
Q ss_pred eEEEeeEeccCCCEEEEEc--cCCeEeecccCc----eEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697 61 GLELTRQTRYEPSQLGWRF--SNNTVIAYVKDL----RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~--~dg~~i~~~~~~----~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~ 130 (145)
.++.|.+.|.|.|.|+|.+ .|++.+...+.. -.+-.-+.|+|-+.... |+|.|.|.|.|.+|..
T Consensus 214 cS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~------~a~w~tCs~rcg~g~~ 283 (560)
T KOG4597|consen 214 CSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQA------DAGWYTCSARCGAGFL 283 (560)
T ss_pred hcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhc------CCCceeecccccccee
Confidence 7899999999999999974 244333221211 11223457888764332 7999999999999976
No 190
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=94.36 E-value=0.89 Score=31.56 Aligned_cols=64 Identities=19% Similarity=0.350 Sum_probs=41.4
Q ss_pred eccCCCE--EEEEccCCeEeecc---c-CceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy5697 68 TRYEPSQ--LGWRFSNNTVIAYV---K-DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKA 139 (145)
Q Consensus 68 ~G~P~P~--i~W~~~dg~~i~~~---~-~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~~ 139 (145)
..++... ++|. ++...... . +......+.+|.|..++.+ |+|.|.=..+|.-|.+-...+.|..
T Consensus 37 ~s~~~~~~IltW~--n~~~~~~~~~~n~r~~F~~enlaLlIkaAq~q------DSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 37 PSQKKFEVILTWK--NDSTPSYNSSFNNRFNFTSENLALLIKAAQPQ------DSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp TSSSEEE-EEEEE--TTEEEESSTTHHHHEEEETTTTEEEESS-SGG------G-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred ccCCceEEEEEEc--CCCcccccccccceEeeeccCceEEEeecCcc------cCceEEEEEEcCCCcEEEEEEEEEe
Confidence 3666665 6773 44432211 1 1123456779999988766 8999999999999999777766653
No 191
>KOG3515|consensus
Probab=94.06 E-value=0.066 Score=48.30 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=41.5
Q ss_pred eEEEeeEeccCC-CEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEE
Q psy5697 61 GLELTRQTRYEP-SQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 133 (145)
Q Consensus 61 ~~L~C~a~G~P~-P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 133 (145)
+.|.|.+.|+|+ +.+.|++.+ +... ..+....+-+|......+. ..+.|.|.|.|+.|.....
T Consensus 25 v~l~C~v~~~pp~~~~eW~h~~-~~~~---~~~~~~~~~~~~~~~~~~~------~~~~~~c~a~ns~~~~~~~ 88 (741)
T KOG3515|consen 25 VPLPCRVNSNPPEIDVEWYHST-SGEH---GRYATIADPTLVTTGDVRD------TVAELNCRAFNSVGMPSRC 88 (741)
T ss_pred ceeeeecCCCCCCcceEEEecC-cccc---cccccccCCceeeecchhh------hhhhhhhhhcccccCceec
Confidence 899999977775 689998644 3322 2234445556666543322 5788999999997765433
No 192
>PHA03376 BARF1; Provisional
Probab=92.25 E-value=0.59 Score=35.94 Aligned_cols=67 Identities=10% Similarity=0.092 Sum_probs=39.8
Q ss_pred eEEEeeEeccCCCEEEEEccCCeE-eec-ccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697 61 GLELTRQTRYEPSQLGWRFSNNTV-IAY-VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~~dg~~-i~~-~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~ 130 (145)
..+.|...|.|.|.++|....|.. ... ..+....-.+|+|.+.--. + ...-..=..+|+.+|....+
T Consensus 142 ~~i~C~sggfP~P~~~Wle~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~ 210 (221)
T PHA03376 142 LTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDL-S--LPKPWHLPVTCVGKNDKEEA 210 (221)
T ss_pred eEEEEecCCcCCchheeccccCCCCCCccccCceeecCCCcEEEEEEe-e--cCCCccCceEEeccCchhhh
Confidence 678999999999999998544432 111 1122344567776653110 0 00113555789999886554
No 193
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=91.80 E-value=1.2 Score=31.20 Aligned_cols=58 Identities=12% Similarity=0.159 Sum_probs=34.8
Q ss_pred CeEEEeeEeccCCC---EEEEEcc-CCeEee-------------cccC-ce--EEeeCC--cEEEcCCCCCCCCCCCCCe
Q psy5697 60 RGLELTRQTRYEPS---QLGWRFS-NNTVIA-------------YVKD-LR--IALSNG--SLMFPPFPETGFRPDVHST 117 (145)
Q Consensus 60 g~~L~C~a~G~P~P---~i~W~~~-dg~~i~-------------~~~~-~~--~~~~~G--sL~i~~~~~~~~~~~~d~G 117 (145)
++.|.|.++|.-.. .++|.|. +| .++ ..+. .. ....+. +|.+.+++.+ |++
T Consensus 15 sv~LsC~~sg~~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~------DTa 87 (115)
T cd05721 15 AASLVCEYTYNGFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRAN------QTD 87 (115)
T ss_pred CEEEEEEecCCccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHH------HCe
Confidence 39999999886655 4788763 33 211 0111 11 112222 6888877665 899
Q ss_pred EEEEEEE
Q psy5697 118 VYRCRAS 124 (145)
Q Consensus 118 ~Y~C~A~ 124 (145)
.|.|.-+
T Consensus 88 ~Y~Ca~e 94 (115)
T cd05721 88 IYFCKIE 94 (115)
T ss_pred EEEEEee
Confidence 9999653
No 194
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=91.44 E-value=0.19 Score=34.17 Aligned_cols=63 Identities=11% Similarity=0.062 Sum_probs=32.2
Q ss_pred eEE-Eee-EeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcC-CCCCCCCCCCCCeEEEEEEEcCC
Q psy5697 61 GLE-LTR-QTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPP-FPETGFRPDVHSTVYRCRASNEA 127 (145)
Q Consensus 61 ~~L-~C~-a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~-~~~~~~~~~~d~G~Y~C~A~N~~ 127 (145)
..+ .|. +.|.|.++|+|+. +....... ......+|+..+.. +.... .++.|--.+.|.++...
T Consensus 19 ~~vA~C~sa~gkPaa~IsW~~-~~~G~~~~--~~~~~~ngT~TV~S~~~l~p-~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 19 TTLAACCAAEGRPAADVTWET-NVYGTSES--HSQEHPNGTTTVTSEYIWVP-SRHANGHPLTCVVSHPA 84 (97)
T ss_pred eeEEEEEccCCccCCEeEEeC-CCCCccce--eeecCCCCCEEEEEEEEEEe-CHHHCCcEEEEEEeCcc
Confidence 444 777 6999999999984 42111110 11223455333221 11000 01214446999998873
No 195
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=90.96 E-value=1.4 Score=30.18 Aligned_cols=33 Identities=12% Similarity=-0.068 Sum_probs=20.3
Q ss_pred CEEEEcCCCCCccCeEEEeeEe-ccCC--CEEEEEc
Q psy5697 47 PFRIKSAPGGNRTRGLELTRQT-RYEP--SQLGWRF 79 (145)
Q Consensus 47 P~~i~~p~~~~~~g~~L~C~a~-G~P~--P~i~W~~ 79 (145)
|.+..+++-..+..+++.|.+. ++|. .+|.|++
T Consensus 4 p~i~~~~~l~~G~~vtv~C~v~~v~P~~~l~v~Llk 39 (99)
T cd07689 4 PEILLSGPLEEGKPVTVKCEVPDVYPFDRLEIELLK 39 (99)
T ss_pred ccCcccCcccCCceEEEEEEecCcccCCceEEEEec
Confidence 3333333333344499999985 5565 5799975
No 196
>KOG3515|consensus
Probab=89.85 E-value=1.3 Score=40.17 Aligned_cols=79 Identities=9% Similarity=-0.049 Sum_probs=45.4
Q ss_pred CCCCCEEEEcCCCCCccCeEEEeeEeccCCCEEEEEccCCeEeecccCceEE----eeCC--cEEEcCCCCCCCCCCCCC
Q psy5697 43 NEHYPFRIKSAPGGNRTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIA----LSNG--SLMFPPFPETGFRPDVHS 116 (145)
Q Consensus 43 ~~~~P~~i~~p~~~~~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~----~~~G--sL~i~~~~~~~~~~~~d~ 116 (145)
....|.+...-+... +++.+|.|.|.|.+.++|. +++......+..+.. ..++ +..|.+.... +.
T Consensus 596 ~~~tp~~~~~~~g~v--~as~~~~a~~~~~~~~~~~-k~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~------~~ 666 (741)
T KOG3515|consen 596 TVRTPNMYTAQEGCV--NASDDCVASGVPSTSFTTA-KTPLQTTEGPHIREKATQQGQTHSSSEWILNHIDG------SD 666 (741)
T ss_pred cccCCceeeeccCcc--cccccceecccccceeecc-cCCCcccCCceEEEeeeeccccccccccccCCcch------hh
Confidence 344455444433211 5899999999999999996 565554333332211 1222 2333332211 12
Q ss_pred eEEEEEEEcCCCce
Q psy5697 117 TVYRCRASNEAGVI 130 (145)
Q Consensus 117 G~Y~C~A~N~~G~~ 130 (145)
+...|++.|.+|+.
T Consensus 667 y~~~c~t~n~lg~~ 680 (741)
T KOG3515|consen 667 YENGCTTQNLLGSD 680 (741)
T ss_pred hcceeeecccCCCc
Confidence 33899999999986
No 197
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=87.90 E-value=0.59 Score=33.54 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=33.5
Q ss_pred CeEEEeeEec-----cCCCEEEEEccCCeEeecccCc-eEE------------eeCC--cEEEcCCCCCCCCCCCCCeEE
Q psy5697 60 RGLELTRQTR-----YEPSQLGWRFSNNTVIAYVKDL-RIA------------LSNG--SLMFPPFPETGFRPDVHSTVY 119 (145)
Q Consensus 60 g~~L~C~a~G-----~P~P~i~W~~~dg~~i~~~~~~-~~~------------~~~G--sL~i~~~~~~~~~~~~d~G~Y 119 (145)
.+.|.|.+.. .+.-.|.|.+ +|..+-...+. ... +..| +|.+.... .-.|.|
T Consensus 29 tV~IPC~v~n~~~~ni~~m~VkWk~-~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~-------a~~GnY 100 (130)
T PF08204_consen 29 TVVIPCFVNNLEANNISEMYVKWKF-KNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSD-------AVEGNY 100 (130)
T ss_dssp EEEE--BBSS---SSGGGEEEEEEE-TTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHH-------HH-EEE
T ss_pred CEEEEeEeccccccccceEEEEEEE-CCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchh-------ccccce
Confidence 3899999875 2344699975 56655321111 111 1123 47764321 128999
Q ss_pred EEEEEcCCCce
Q psy5697 120 RCRASNEAGVI 130 (145)
Q Consensus 120 ~C~A~N~~G~~ 130 (145)
+|.+.+...+.
T Consensus 101 TCeVt~~~~eg 111 (130)
T PF08204_consen 101 TCEVTELSREG 111 (130)
T ss_dssp EEEEEETTEEE
T ss_pred EEEEEecCCCc
Confidence 99998876654
No 198
>PHA03189 UL14 tegument protein; Provisional
Probab=80.66 E-value=3.8 Score=33.61 Aligned_cols=27 Identities=37% Similarity=0.658 Sum_probs=20.1
Q ss_pred CCeEEEEEEEcC-CCceEEEEEEEEecc
Q psy5697 115 HSTVYRCRASNE-AGVILSRFVHVKADS 141 (145)
Q Consensus 115 d~G~Y~C~A~N~-~G~~~s~~v~v~~~~ 141 (145)
-+|+|.|+-.|. +|-+..+.+.|..++
T Consensus 144 taG~Y~CvLrN~tHglv~~rf~ivtdve 171 (348)
T PHA03189 144 TAGMYECVLRNETHGLVLQRFVIVTDVE 171 (348)
T ss_pred ccceEEEEeccccceeeeEEeeeeeehh
Confidence 399999999999 666666666665443
No 199
>PHA03042 CD47-like protein; Provisional
Probab=77.77 E-value=6.7 Score=31.62 Aligned_cols=57 Identities=25% Similarity=0.307 Sum_probs=35.1
Q ss_pred eEEEeeEecc-----CCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697 61 GLELTRQTRY-----EPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV 129 (145)
Q Consensus 61 ~~L~C~a~G~-----P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~ 129 (145)
+.++|...-- -.-.+.|.+ ||+.+-...+. ..-+|.+.-- +.-.|.|+|.|.+..-+
T Consensus 34 V~IpC~v~n~~~~ni~~~~V~Wkf-~~~~If~~n~t----n~aSL~~~f~-------~~l~GNYTCEv~~l~n~ 95 (286)
T PHA03042 34 IVIVCNLNLLIYYNISNIHINWKF-NNKVIFKKNNT----NTSSLKFNFS-------KNLSGNYTCEAINKFNK 95 (286)
T ss_pred EEEEeecCChhhcCccceEEEEEe-CCeeEEEecCC----cceEEEEecc-------ccCCCceeEEEeecccC
Confidence 8899987552 345699964 77765432211 1125776321 12499999999986543
No 200
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=77.64 E-value=16 Score=23.61 Aligned_cols=56 Identities=11% Similarity=0.112 Sum_probs=38.8
Q ss_pred CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEE
Q psy5697 60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 132 (145)
Q Consensus 60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 132 (145)
...|...|.|. .+.+.|+ -||+.+.... ....+.+.+- ..|.|+=.+....|...+
T Consensus 31 ~~~l~l~a~~~-~~~~~W~-vdg~~~g~~~------~~~~~~~~~~---------~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWF-VDGEPLGTTQ------PGHQLFWQPD---------RPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CCcEEEE-ECCEEcccCC------CCCeEEeCCC---------CCeeEEEEEEcCCCCEEE
Confidence 36777777776 6699997 6998874322 2234444321 389999999999998765
No 201
>PHA02982 hypothetical protein; Provisional
Probab=76.72 E-value=12 Score=29.39 Aligned_cols=66 Identities=11% Similarity=0.036 Sum_probs=42.4
Q ss_pred cCeEEEeeE-eccCCCEEEEEccCCeEeecc-------------cC----ceEE---eeCCcEEEcCCCCCCCCCCCCCe
Q psy5697 59 TRGLELTRQ-TRYEPSQLGWRFSNNTVIAYV-------------KD----LRIA---LSNGSLMFPPFPETGFRPDVHST 117 (145)
Q Consensus 59 ~g~~L~C~a-~G~P~P~i~W~~~dg~~i~~~-------------~~----~~~~---~~~GsL~i~~~~~~~~~~~~d~G 117 (145)
..+.|.|.- .+.-.-+..|+..||..+... ++ .... ..+.+|.|..+..+ ..|
T Consensus 40 ~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~------N~G 113 (251)
T PHA02982 40 QEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQ------NLG 113 (251)
T ss_pred CcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcc------cCC
Confidence 348999983 455567889987676544311 10 1111 23348999877655 689
Q ss_pred EEEEEEEcCCCce
Q psy5697 118 VYRCRASNEAGVI 130 (145)
Q Consensus 118 ~Y~C~A~N~~G~~ 130 (145)
=|.|.|+...|.-
T Consensus 114 CYtc~~ks~~~k~ 126 (251)
T PHA02982 114 CFTCEAKDAEGKE 126 (251)
T ss_pred ceEEEEecCCCch
Confidence 9999999876543
No 202
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=75.07 E-value=13 Score=30.84 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=16.2
Q ss_pred CeEEEeeEeccCCC--EEEEEcc
Q psy5697 60 RGLELTRQTRYEPS--QLGWRFS 80 (145)
Q Consensus 60 g~~L~C~a~G~P~P--~i~W~~~ 80 (145)
.+.|.|.|+|.=|. .++|.+.
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 47999999997655 5689753
No 203
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=64.53 E-value=5.1 Score=27.32 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=16.1
Q ss_pred eEEEee-EeccCCCEEEEE
Q psy5697 61 GLELTR-QTRYEPSQLGWR 78 (145)
Q Consensus 61 ~~L~C~-a~G~P~P~i~W~ 78 (145)
..-.|. |.|.|+.+|+|.
T Consensus 23 ~VA~CiSa~GrPpa~ItW~ 41 (98)
T cd05890 23 LVATCVSANGKPPSVVRWD 41 (98)
T ss_pred EEEEEEcCCCcCCcEeEEE
Confidence 567899 799999999996
No 204
>KOG3611|consensus
Probab=48.03 E-value=38 Score=31.06 Aligned_cols=58 Identities=12% Similarity=0.217 Sum_probs=33.7
Q ss_pred eEEEeeEeccCCCEEEEEc-cCC--e--EeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697 61 GLELTRQTRYEPSQLGWRF-SNN--T--VIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNE 126 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~-~dg--~--~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~ 126 (145)
..|.|...+.-.+ +.|+. ..+ . ++.... .......|.+.+..++.. |.|.|.|.|.+.
T Consensus 572 ~~l~c~~~~~~a~-~~w~~~~~~~~~~~~~~~~~-~~~~~~~G~lll~~~q~~------~~G~y~c~~~e~ 634 (737)
T KOG3611|consen 572 EVLRCVPSSNQAP-VVWYHQSTKDGRKEEVRQRD-VVSRTDEGGLVLLSVQKL------DGGTYPCYADES 634 (737)
T ss_pred ceeeccccccccc-eeeEeeccCccccceeccCc-ceeecccCceeEEEEeec------cCcccccccccC
Confidence 5888987775555 78862 222 1 221111 112224565666555543 799999999876
No 205
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=47.44 E-value=76 Score=20.49 Aligned_cols=13 Identities=46% Similarity=0.698 Sum_probs=10.5
Q ss_pred CCeEEEEEEE-cCC
Q psy5697 115 HSTVYRCRAS-NEA 127 (145)
Q Consensus 115 d~G~Y~C~A~-N~~ 127 (145)
|+|.++|.|+ |..
T Consensus 54 d~G~w~C~a~~~~~ 67 (80)
T PF05790_consen 54 DSGTWVCTASDNEP 67 (80)
T ss_dssp GSEEEEEEEEECTT
T ss_pred CCEEEEEEEcCCce
Confidence 7999999994 443
No 206
>KOG1026|consensus
Probab=43.03 E-value=18 Score=33.25 Aligned_cols=19 Identities=11% Similarity=-0.221 Sum_probs=17.8
Q ss_pred eEEEeeEeccCCCEEEEEc
Q psy5697 61 GLELTRQTRYEPSQLGWRF 79 (145)
Q Consensus 61 ~~L~C~a~G~P~P~i~W~~ 79 (145)
++++|.+.|.|-|.+.|+.
T Consensus 210 ~~~~c~~~~~~vp~~~~~~ 228 (774)
T KOG1026|consen 210 ITLKCSQAGIPVPCHYWFP 228 (774)
T ss_pred heeeeecccCCCcceeeec
Confidence 7999999999999999974
No 207
>PHA03052 Hypothetical protein; Provisional
Probab=38.83 E-value=71 Score=20.34 Aligned_cols=26 Identities=12% Similarity=0.031 Sum_probs=19.1
Q ss_pred CeEEEeeE---eccCCCEEEEEccCCeEee
Q psy5697 60 RGLELTRQ---TRYEPSQLGWRFSNNTVIA 86 (145)
Q Consensus 60 g~~L~C~a---~G~P~P~i~W~~~dg~~i~ 86 (145)
.+++.|+| .|...+-|.|. .|+..+.
T Consensus 14 ~ltI~Ckv~lg~g~~~a~V~W~-~N~~~~e 42 (69)
T PHA03052 14 NLTITCKVSLRPPTTDADVFWI-SNGMYYE 42 (69)
T ss_pred CceEeEEEEecCCCcceEEEEE-eCCcEEe
Confidence 38999997 34445778996 6888874
No 208
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=34.33 E-value=1e+02 Score=26.59 Aligned_cols=28 Identities=7% Similarity=0.083 Sum_probs=18.1
Q ss_pred CCeEEEEEEEcCCCceEEEEEEEEeccC
Q psy5697 115 HSTVYRCRASNEAGVILSRFVHVKADSR 142 (145)
Q Consensus 115 d~G~Y~C~A~N~~G~~~s~~v~v~~~~~ 142 (145)
|+|.|+|+---.--+..-+.+.|+.-++
T Consensus 92 dEGrYrCIFYLn~~EtyrH~I~vrVmPK 119 (500)
T PHA02914 92 EDGDFKCIFYLGDNESHKHEILVRKAPK 119 (500)
T ss_pred cCCcEEEEEEeCCceeEEEEEEEEEccc
Confidence 7999999985444444555666665443
No 209
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=32.01 E-value=9.5 Score=21.72 Aligned_cols=14 Identities=7% Similarity=0.254 Sum_probs=10.7
Q ss_pred eeeeecCceeEeec
Q psy5697 7 STLLADADTYIIAD 20 (145)
Q Consensus 7 ~~~~~~~~~~~~~~ 20 (145)
|+|.|||++.|+..
T Consensus 1 NP~~CdC~l~~~~~ 14 (51)
T smart00082 1 NPFICDCELRWLLR 14 (51)
T ss_pred CCccCcCCchHHHH
Confidence 67889999876654
No 210
>PHA03282 envelope glycoprotein E; Provisional
Probab=28.73 E-value=1.4e+02 Score=26.23 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=20.5
Q ss_pred eEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697 92 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRA 123 (145)
Q Consensus 92 ~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A 123 (145)
+....|++|.|.+++.+ |+|.|.=.+
T Consensus 118 rvs~~n~tl~l~~a~~~------DsG~Y~L~~ 143 (540)
T PHA03282 118 RVAVVNGTLVLREARET------DSGMYVLSV 143 (540)
T ss_pred ceeEecceEEEeecccc------CCceEEEEe
Confidence 34456999999988765 899998875
No 211
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=22.28 E-value=1.9e+02 Score=17.49 Aligned_cols=51 Identities=12% Similarity=0.138 Sum_probs=29.1
Q ss_pred eEEEeeEec-cCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEE--EEEEEcCCCce
Q psy5697 61 GLELTRQTR-YEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVY--RCRASNEAGVI 130 (145)
Q Consensus 61 ~~L~C~a~G-~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y--~C~A~N~~G~~ 130 (145)
+.|.....+ .....+.|.+.||..... + .-+..+. ..|.| +..+.|..|+.
T Consensus 17 v~f~~~~~~~~~~~~~~W~fgdg~~~~~-~-------~~~~~y~-----------~~G~y~v~l~v~n~~g~~ 70 (79)
T smart00089 17 VTFTATSSDDGSIVSYTWDFGDGTSSTG-P-------TVTHTYT-----------KPGTYTVTLTVTNAVGSA 70 (79)
T ss_pred EEEEEECCCCCCeEEEEEEeCCCCccCC-C-------CEEEEeC-----------CCcEEEEEEEEEcCCCcE
Confidence 677776655 346778887767632211 1 0011221 37887 56688999954
Done!