RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5697
(145 letters)
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 66.9 bits (163), Expect = 4e-14
Identities = 29/63 (46%), Positives = 39/63 (61%)
Query: 77 WRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 136
W S+ T + V LR S+G L+FPPF +R +VH+ VY C A N+ G I+SR VH
Sbjct: 38 WIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVH 97
Query: 137 VKA 139
V+A
Sbjct: 98 VRA 100
Score = 29.5 bits (66), Expect = 0.32
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 7/49 (14%)
Query: 92 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF-VHVKA 139
R+ +G+L+ S Y C +N G + V A
Sbjct: 264 RVKQVSGTLIIKDAVVE------DSGKYLCVVNNSVGGESVETVLTVTA 306
Score = 29.5 bits (66), Expect = 0.34
Identities = 6/42 (14%), Positives = 12/42 (28%), Gaps = 6/42 (14%)
Query: 92 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 133
I S L + + +Y+C N+ +
Sbjct: 347 AIGHSESVLRI-----ESVKKE-DKGMYQCFVRNDRESAEAS 382
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 63.0 bits (153), Expect = 1e-12
Identities = 29/63 (46%), Positives = 39/63 (61%)
Query: 77 WRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 136
W S+ T + V LR S+G L+FPPF +R +VH+ VY C A N+ G I+SR VH
Sbjct: 73 WIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVH 132
Query: 137 VKA 139
V+A
Sbjct: 133 VRA 135
Score = 33.0 bits (75), Expect = 0.024
Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 10/65 (15%)
Query: 77 WRFSNNTVIAYVKDL----RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 132
W+ + KDL I + G+L + + Y C A N G LS
Sbjct: 748 WKKAVGDTPGEYKDLKKSDNIRVEEGTLHV-----DNIQKT-NEGYYLCEAINGIGSGLS 801
Query: 133 RFVHV 137
+ +
Sbjct: 802 AVIMI 806
Score = 31.4 bits (71), Expect = 0.096
Identities = 7/54 (12%), Positives = 15/54 (27%), Gaps = 7/54 (12%)
Query: 92 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR-FVHVKADSRIP 144
I S L + + +Y+C N+ + + + P
Sbjct: 383 AIGHSESVLRI-----ESVKKE-DKGMYQCFVRNDRESAEASAELKLGGRFDPP 430
Score = 29.9 bits (67), Expect = 0.27
Identities = 10/63 (15%), Positives = 16/63 (25%), Gaps = 8/63 (12%)
Query: 72 PSQLGWRFSNNTVIA--YVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV 129
P + W + + R+ L H+ + C A N AG
Sbjct: 649 PLNIDWTLDGQAISEDLGITTSRVGRRGSVLTI-----EAVEAS-HAGNFTCHARNLAGH 702
Query: 130 ILS 132
Sbjct: 703 QQF 705
Score = 29.1 bits (65), Expect = 0.47
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 7/69 (10%)
Query: 70 YEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV 129
Y + W +N + + ++ NG+L+ Y C A N+ G
Sbjct: 553 YPIDSIVWER-DNRALPINRKQKV-FPNGTLIIENVERNS-----DQATYTCVAKNQEGY 605
Query: 130 ILSRFVHVK 138
+ V+
Sbjct: 606 SARGSLEVQ 614
Score = 27.2 bits (60), Expect = 2.3
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 7/55 (12%)
Query: 86 AYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF-VHVKA 139
A V + R+ +G+L+ + S Y C +N G + V A
Sbjct: 294 AVVLNDRVKQVSGTLIIKDA-----VVE-DSGKYLCVVNNSVGGESVETVLTVTA 342
Score = 26.4 bits (58), Expect = 3.7
Identities = 9/60 (15%), Positives = 15/60 (25%), Gaps = 8/60 (13%)
Query: 72 PSQLGWRFSNNTVI--AYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG 128
+ W D + L +G L P+ Y+CR +
Sbjct: 170 VEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHI-----REVGPEDGYKSYQCRTKHRLT 224
Score = 26.1 bits (57), Expect = 5.9
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 118 VYRCRASNEAGVI 130
+Y+C A ++ GV
Sbjct: 504 LYKCIAKSKVGVA 516
Score = 25.7 bits (56), Expect = 7.6
Identities = 5/30 (16%), Positives = 8/30 (26%)
Query: 115 HSTVYRCRASNEAGVILSRFVHVKADSRIP 144
++ A G AD + P
Sbjct: 10 WLMLFAAVALIACGSQTLAANPPDADQKGP 39
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 52.5 bits (126), Expect = 4e-09
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 77 WRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 136
W+ N T + D R ++ +GSL+ + + Y+C A+N G I+SR
Sbjct: 42 WKL-NGTDVDIGMDFRYSVVDGSLLINNPNK-----TQDAGTYQCIATNSFGTIVSREAK 95
Query: 137 VKA 139
++
Sbjct: 96 LQF 98
Score = 34.4 bits (79), Expect = 0.007
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 92 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR-FVHVKAD 140
RI + G+L T + +Y+C A N+ GVI S + V A+
Sbjct: 341 RIQIEQGTLNI-----TIVNLS-DAGMYQCVAENKHGVIFSSAELSVIAE 384
Score = 31.0 bits (70), Expect = 0.11
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 77 WRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF-V 135
WR ++ IA + R SNG L P F + + Y C A N G +++ +
Sbjct: 239 WRRADGKPIA--RKARRHKSNGILEIPNFQQE------DAGSYECVAENSRGKNVAKGQL 290
Query: 136 HVKA 139
A
Sbjct: 291 TFYA 294
Score = 25.6 bits (56), Expect = 6.9
Identities = 9/56 (16%), Positives = 13/56 (23%), Gaps = 15/56 (26%)
Query: 77 WRFSNNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDV---HSTVYRCRASNEAG 128
W F+ + R G+L V Y C +N
Sbjct: 137 WIFNEYPSYQD--NRRFVSQETGNLYIA---------KVEKSDVGNYTCVVTNTVT 181
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 48.7 bits (116), Expect = 1e-07
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 77 WRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 136
W+ N T + D R L G L+ + Y+C A+N G ++SR
Sbjct: 41 WKM-NGTELKMGPDSRYRLVAGDLVISNP-----VKAKDAGSYQCVATNARGTVVSREAS 94
Query: 137 VK 138
++
Sbjct: 95 LR 96
Score = 34.4 bits (79), Expect = 0.008
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 92 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR-FVHVKA 139
RI +S G L F + + S +Y+C A N+ G + + + V+A
Sbjct: 340 RIEVSGGELRF-----SKLVLE-DSGMYQCVAENKHGTVYASAELTVQA 382
Score = 28.7 bits (64), Expect = 0.65
Identities = 8/49 (16%), Positives = 12/49 (24%), Gaps = 7/49 (14%)
Query: 92 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF-VHVKA 139
+ S L Y C A N G + + + A
Sbjct: 251 KWLSSEPLLHIQNVDFE------DEGTYECEAENIKGRDTYQGRIIIHA 293
Score = 26.4 bits (58), Expect = 3.8
Identities = 8/58 (13%), Positives = 14/58 (24%), Gaps = 7/58 (12%)
Query: 77 WRFSNNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 133
W + R + G+L + Y C A++ I
Sbjct: 136 WLLNEFPNFIPADGRRFVSQTTGNLYIAKTEAS------DLGNYSCFATSHIDFITKS 187
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 46.4 bits (110), Expect = 7e-07
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
Query: 71 EPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130
+ + W+ + + + GSL+F + Y+C A AGV
Sbjct: 35 QGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQAS------DEGHYQCFAETPAGVA 88
Query: 131 LSRFVHVK 138
SR + +
Sbjct: 89 SSRVISFR 96
Score = 31.0 bits (70), Expect = 0.13
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Query: 92 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR-FVHV 137
R +++ L+ G + Y CRA+NE G V V
Sbjct: 354 RATVTDSGLVI-----KGVKNG-DKGYYGCRATNEHGDKYFETLVQV 394
Score = 29.5 bits (66), Expect = 0.35
Identities = 8/44 (18%), Positives = 11/44 (25%), Gaps = 6/44 (13%)
Query: 95 LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK 138
S L+F VY C N G + +
Sbjct: 267 TSGKRLLFKTTLPE------DEGVYTCEVDNGVGKPQKHSLKLT 304
Score = 25.6 bits (56), Expect = 6.4
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 4/50 (8%)
Query: 90 DLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK 138
D RI +G+L F + Y C A N A V +
Sbjct: 152 DRRITAGPDGNLYFTIVTKEDVS---DIYKYVCTAKNAAVDEEVVLVEYE 198
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 44.1 bits (104), Expect = 4e-06
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 77 WRFSNNTVIAYVKDLRIAL--SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF 134
W N+ KD R+++ +G+L+ +G RP+ + Y+C A N+ G LS
Sbjct: 51 WTR-NSRFFNIAKDPRVSMRRRSGTLVIDFR--SGGRPEEYEGEYQCFARNKFGTALSNR 107
Query: 135 VHVK 138
+ ++
Sbjct: 108 IRLQ 111
Score = 36.4 bits (84), Expect = 0.002
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 77 WRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR-FV 135
W + + + + ++ +++F + VY+C SNE G +L+ FV
Sbjct: 346 WMVNGEPLQSAPPNPNREVAGDTIIF-----RDTQIS-SRAVYQCNTSNEHGYLLANAFV 399
Query: 136 HV 137
V
Sbjct: 400 SV 401
Score = 31.0 bits (70), Expect = 0.11
Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 7/49 (14%)
Query: 92 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF-VHVKA 139
+ N +L E S Y C ASN+ G I V VKA
Sbjct: 269 KFENFNKALRITNVSEE------DSGEYFCLASNKMGSIRHTISVRVKA 311
Score = 27.5 bits (61), Expect = 1.8
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 8/62 (12%)
Query: 77 WRFSNNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 135
W S+ I D R++ NG L F D+ + Y C A + +
Sbjct: 151 WMSSSMEPITQ--DKRVSQGHNGDLYF----SNVMLQDMQTD-YSCNARFHFTHTIQQKN 203
Query: 136 HV 137
Sbjct: 204 PF 205
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 41.3 bits (97), Expect = 8e-06
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 92 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK 138
R+ L +GSL F VY C A N G +S ++
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRP-DEGVYVCVARNYLGEAVSHDASLE 106
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 38.6 bits (90), Expect = 2e-04
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 92 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK 138
R+ L +GSL F VY C A N G +S ++
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRP-DEGVYVCVARNYLGEAVSHDASLE 106
Score = 29.0 bits (65), Expect = 0.39
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
Query: 77 WRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 136
W+ + + KD RI + G LM ++ + Y C +N G S
Sbjct: 146 WKKDGSPLD--DKDERITIRGGKLMITYTRKS------DAGKYVCVGTNMVGERESEVAE 197
Query: 137 V 137
+
Sbjct: 198 L 198
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 37.6 bits (87), Expect = 8e-04
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 6/60 (10%)
Query: 78 RFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHV 137
+ NN + L+++ N +L + Y+C N S V +
Sbjct: 144 WWVNNQSLPVSPRLQLSNGNRTLTLFNVTRN------DTASYKCETQNPVSARRSDSVIL 197
Score = 36.5 bits (84), Expect = 0.002
Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 7/77 (9%)
Query: 62 LELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRC 121
+ T + + + W + N + L+++ N +L + Y C
Sbjct: 485 VAFTCEPEAQNTTYLW-WVNGQSLPVSPRLQLSNGNRTLTLFNVTRN------DARAYVC 537
Query: 122 RASNEAGVILSRFVHVK 138
N S V +
Sbjct: 538 GIQNSVSANRSDPVTLD 554
Score = 31.5 bits (71), Expect = 0.079
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 7/77 (9%)
Query: 62 LELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRC 121
+ LT + + + W NN + L+++ N +L Y C
Sbjct: 307 VALTCEPEIQNTTYLWWV-NNQSLPVSPRLQLSNDNRTLTLLSVTRN------DVGPYEC 359
Query: 122 RASNEAGVILSRFVHVK 138
NE V S V +
Sbjct: 360 GIQNELSVDHSDPVILN 376
Score = 31.1 bits (70), Expect = 0.11
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 7/57 (12%)
Query: 89 KDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKADSRIP 144
D I L E +S +Y C+A+N A + + + +P
Sbjct: 417 IDGNIQQHTQELFISNITEK------NSGLYTCQANNSASGHSRTTVKTITVSAELP 467
Score = 31.1 bits (70), Expect = 0.12
Identities = 7/53 (13%), Positives = 12/53 (22%), Gaps = 6/53 (11%)
Query: 92 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKADSRIP 144
I N SL+ + + Y V + +P
Sbjct: 65 EIIYPNASLLIQNIIQN------DTGFYTLHVIKSDLVNEEATGQFRVYPELP 111
Score = 26.5 bits (58), Expect = 4.7
Identities = 6/25 (24%), Positives = 9/25 (36%), Gaps = 1/25 (4%)
Query: 115 HSTVYRCRASNEAG-VILSRFVHVK 138
++ Y C SN A S +
Sbjct: 615 NNGTYACFVSNLATGRNNSIVKSIT 639
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 37.2 bits (86), Expect = 8e-04
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 92 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK 138
R+ +G+L F + D Y C A N G +SR ++
Sbjct: 59 RVQFKDGALFFYRTMQGKKEQD--GGEYWCVAKNRVGQAVSRHASLQ 103
Score = 27.9 bits (62), Expect = 1.2
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 4/26 (15%)
Query: 118 VYRCRASNEAGVILSRF----VHVKA 139
Y+C A N G S + V VKA
Sbjct: 184 NYKCIAQNLVGTRESSYAKLIVQVKA 209
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 36.4 bits (84), Expect = 0.002
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 9/71 (12%)
Query: 77 WRFSNNTVIAYVKDLRI-ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR-- 133
W+ + + D R+ L +G+L + +P S VYRC A N A
Sbjct: 155 WQKNQQDLNPIPGDSRVVVLPSGALQI-----SRLQPG-DSGVYRCSARNPASTRTGNEA 208
Query: 134 FVHVKADSRIP 144
V + +D +
Sbjct: 209 EVRILSDPGLH 219
Score = 35.6 bits (82), Expect = 0.003
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 77 WRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRAS-NEAGVILSRFV 135
W+ + + D + L NGSL+ + +Y+C AS ++G I+SR
Sbjct: 56 WKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKP-DEGLYQCEASLGDSGSIISRTA 114
Query: 136 HVK 138
V
Sbjct: 115 KVM 117
Score = 32.9 bits (75), Expect = 0.028
Identities = 9/54 (16%), Positives = 14/54 (25%), Gaps = 7/54 (12%)
Query: 77 WRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130
W VI L +L+ + S Y C + + I
Sbjct: 255 WLR-GEEVIQLRSKKYSLLGGSNLLISNVTDD------DSGTYTCVVTYKNENI 301
Score = 26.7 bits (59), Expect = 2.9
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 7/46 (15%)
Query: 95 LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR-FVHVKA 139
+ +L G Y+C A NEAG S + V
Sbjct: 362 VGGSNLRI-----LGVVKS-DEGFYQCVAENEAGNAQSSAQLIVPK 401
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 35.9 bits (83), Expect = 0.002
Identities = 11/61 (18%), Positives = 16/61 (26%), Gaps = 2/61 (3%)
Query: 77 WRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 136
WR + V + G + D Y C A N G +S
Sbjct: 40 WRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRD--DAPYECVAENGVGDAVSADAT 97
Query: 137 V 137
+
Sbjct: 98 L 98
Score = 34.0 bits (78), Expect = 0.009
Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 10/56 (17%)
Query: 92 RIALSNGSLMFPP-FPETGFRPDVHSTVYRCRASNEAGVILSR--FVHVKADSRIP 144
R +L +G L E Y C A N G S+ ++VK
Sbjct: 157 RYSLKDGFLQIENSREE-------DQGKYECVAENSMGTEHSKATNLYVKVRRVGT 205
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 35.6 bits (82), Expect = 0.002
Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 10/66 (15%)
Query: 77 WRFSNNTVIAY----VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 132
W N ++ + + + +L + +Y+C + E G
Sbjct: 37 WFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANID------DAGIYKCVVTAEDGTQSE 90
Query: 133 RFVHVK 138
V+VK
Sbjct: 91 ATVNVK 96
Score = 27.5 bits (61), Expect = 1.3
Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 15/66 (22%)
Query: 77 WRFSNNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHST---VYRCRASNEAG-VIL 131
W+ + KD+R LSN L + T YRC A I
Sbjct: 134 WKH-KGRDVILKKDVRFIVLSNNYLQIR---------GIKKTDEGTYRCEGRILARGEIN 183
Query: 132 SRFVHV 137
+ + V
Sbjct: 184 FKDIQV 189
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 34.0 bits (78), Expect = 0.010
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Query: 77 WRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG 128
SN V++ + +++ NG L F VY C A E
Sbjct: 280 VSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVE------DGGVYTCYAMGETF 325
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 34.0 bits (77), Expect = 0.012
Identities = 7/47 (14%), Positives = 13/47 (27%), Gaps = 5/47 (10%)
Query: 92 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK 138
+ NG L + + Y C + + G + V
Sbjct: 83 NRRVKNGDLWIANY-----TSNDSHRRYLCTVTTKNGDCVQGIVRSH 124
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 33.7 bits (76), Expect = 0.012
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 70 YEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV 129
Y S++ W+ ++ + D I L F E S Y C
Sbjct: 138 YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELE-----QSGYYVCYPRGSKPE 192
Query: 130 ILSRFVHVKA 139
+ +++++A
Sbjct: 193 DANFYLYLRA 202
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 33.3 bits (76), Expect = 0.016
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 77 WRFSNNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 135
W V + RI L +G+L ET Y C A+N AGV S
Sbjct: 142 WFKDFLPVDPSASNGRIKQLRSGALQIESSEET------DQGKYECVATNSAGVRYSSPA 195
Query: 136 HVK 138
++
Sbjct: 196 NLY 198
Score = 29.8 bits (67), Expect = 0.27
Identities = 12/69 (17%), Positives = 19/69 (27%), Gaps = 4/69 (5%)
Query: 77 WRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR-FV 135
W + + I + D VY C A N G I +
Sbjct: 40 WNK-KGKKVNSQRFETIEFDESAGAVLRIQPLRTPRD--ENVYECVAQNSVGEITVHAKL 96
Query: 136 HVKADSRIP 144
V + ++P
Sbjct: 97 TVLREDQLP 105
Score = 27.5 bits (61), Expect = 1.6
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 118 VYRCRASNEAGVILSR-FVHVKADSRIP 144
Y C A + GVI + + VK+ +
Sbjct: 269 NYTCVAMSSLGVIEAVAQITVKSLPKAG 296
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 33.2 bits (76), Expect = 0.016
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 116 STVYRCRASNEAGVILSR--FVHVK 138
ST++ C A N G+ SR VH++
Sbjct: 158 STMFSCEAHNLKGLASSRTATVHLQ 182
Score = 30.2 bits (68), Expect = 0.15
Identities = 6/43 (13%), Positives = 13/43 (30%), Gaps = 6/43 (13%)
Query: 95 LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHV 137
G L + + Y C+ + +S+ V +
Sbjct: 57 HWIGFLSLKSVERS------DAGRYWCQVEDGGETEISQPVWL 93
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.017
Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 33/133 (24%)
Query: 26 RPLGYLVGNIVYS-SRSENEHYP-------FRIKSAPGGNRTRGLELTRQTRYEPS---Q 74
RPL G++ + + F K P T G EP+ +
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQF-NKILP--EPTEGFAAD----DEPTTPAE 59
Query: 75 LGWRFSNNTVIAYVKDLRIALSNGS------LMFPPFPETGF--RPDVHSTVYRCRASNE 126
L +F + YV L G L F E + D+H+ + N+
Sbjct: 60 LVGKF-----LGYVSSLVEPSKVGQFDQVLNLCLTEF-ENCYLEGNDIHALAAKLLQEND 113
Query: 127 AGVILSRFVHVKA 139
++ ++ + +K
Sbjct: 114 TTLVKTKEL-IKN 125
Score = 31.9 bits (72), Expect = 0.066
Identities = 26/164 (15%), Positives = 53/164 (32%), Gaps = 49/164 (29%)
Query: 7 STLLADADT----YIIADRSL-------------FPRPLGYLVGNIVYSSRSENEHYP-- 47
+ +A+ D+ ++ +++ +P L +I+ S NE P
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT--SLPPSILEDSLENNEGVPSP 337
Query: 48 -FRIKSAPGGNRTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMF---- 102
I + + + +T N+ + K + I+L NG+
Sbjct: 338 MLSIS---NLTQEQVQDYVNKT-------------NSHLPAGKQVEISLVNGAKNLVVSG 381
Query: 103 PPFPETGFRPDVH-----STVYRCRA--SNEAGVILSRFVHVKA 139
PP G + S + + R S +RF+ V +
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS 425
Score = 30.0 bits (67), Expect = 0.31
Identities = 24/138 (17%), Positives = 40/138 (28%), Gaps = 50/138 (36%)
Query: 4 FHISTLLADADTYIIADRSLFPRPLGYLVGNI---VYSSRSENEHYPFRIKSAPGGNRTR 60
FH S LL A I D L + + +I VY + G+ R
Sbjct: 427 FH-SHLLVPASDLINKD--LVKNNVSFNAKDIQIPVYDTFD--------------GSDLR 469
Query: 61 GLE------LTRQTRYEPSQLGWRFSNNTVIAYVKDL---------------------RI 93
L + P + W + ++ D R+
Sbjct: 470 VLSGSISERIVDCIIRLP--VKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRV 527
Query: 94 ALSNGSLMFPPFPETGFR 111
++ G+L P + GF+
Sbjct: 528 IVA-GTLDINPDDDYGFK 544
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 32.4 bits (74), Expect = 0.027
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Query: 77 WRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG 128
W + N V + L+N +L ++ +YRC EA
Sbjct: 36 WLYHNEEVTTISDNRFAMLANNNLQILNINKS------DEGIYRCEGRVEAR 81
Score = 29.4 bits (66), Expect = 0.28
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 16/68 (23%)
Query: 77 WRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHST---VYRCRASNEAGVILSR 133
W N +I + + SN L ++ ++ Y CRA+N+AG +
Sbjct: 132 WFR-NGKLIEENEKYILKGSNTELTVR---------NIINSDGGPYVCRATNKAGEDEKQ 181
Query: 134 F---VHVK 138
V V+
Sbjct: 182 AFLQVFVQ 189
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 32.6 bits (74), Expect = 0.028
Identities = 14/76 (18%), Positives = 20/76 (26%), Gaps = 20/76 (26%)
Query: 77 WRFSNNTVIAYVK---------DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA 127
W+F + A V R+ S+ + F + Y C S E
Sbjct: 35 WKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRK------DNGEYTCMVSEEG 88
Query: 128 GVILSRF-----VHVK 138
G V V
Sbjct: 89 GQNYGEVSIHLTVLVP 104
Score = 27.2 bits (60), Expect = 1.9
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 92 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKA 139
I +G L+F P S Y C+A N G + S H+ A
Sbjct: 163 TIDPKSGDLIFDPVTAF------DSGEYYCQAQNGYGTAMRSEAAHMDA 205
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 32.4 bits (73), Expect = 0.034
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 12/73 (16%)
Query: 77 WRFSNNTV-IAYVKDLRIALSNGSLMF-PPFPETGFRPDVHSTVYRCRASNEAGVILSRF 134
W +++ + ++ R+ +G+L P E S Y C N +
Sbjct: 59 WHKNDSARTVPGEEETRMWAQDGALWLLPALQE-------DSGTYVCTTRNASYCDKMSI 111
Query: 135 ---VHVKADSRIP 144
V D+ +P
Sbjct: 112 ELRVFENTDAFLP 124
Score = 26.6 bits (58), Expect = 3.2
Identities = 4/22 (18%), Positives = 7/22 (31%), Gaps = 1/22 (4%)
Query: 117 TVYRCRASNEAGVILSRFVHVK 138
++C N + VK
Sbjct: 312 MDFKCVVHNTLSFQ-TLRTTVK 332
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 32.8 bits (74), Expect = 0.034
Identities = 8/69 (11%), Positives = 19/69 (27%), Gaps = 8/69 (11%)
Query: 77 WRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF-V 135
W +N + + + N +L + +Y C+A + G
Sbjct: 700 WFK-DNETLVEDSGIVLKDGNRNLTIRRVRKE------DEGLYTCQACSVLGCAKVEAFF 752
Query: 136 HVKADSRIP 144
++
Sbjct: 753 IIEGAQEKT 761
Score = 29.3 bits (65), Expect = 0.42
Identities = 4/32 (12%), Positives = 9/32 (28%), Gaps = 1/32 (3%)
Query: 115 HSTVYRCRASNEAG-VILSRFVHVKADSRIPM 145
+ Y+C ++ +V I
Sbjct: 97 DTGAYKCFYRETDLASVIYVYVQDYRSPFIAS 128
Score = 29.3 bits (65), Expect = 0.51
Identities = 10/74 (13%), Positives = 19/74 (25%), Gaps = 8/74 (10%)
Query: 72 PSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 131
L R+ + + S P + + ++ + C A
Sbjct: 158 NVSLCARYPEKRFVPDGNRISW-DSKKGFTIPSYMIS------YAGMVFCEAKINDESYQ 210
Query: 132 SRF-VHVKADSRIP 144
S + V RI
Sbjct: 211 SIMYIVVVVGYRIY 224
Score = 28.2 bits (62), Expect = 1.0
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 115 HSTVYRCRASNEAGVILSRF-VHVKADSRI 143
S +Y+C A N+ G HV I
Sbjct: 524 VSALYKCEAVNKVGRGERVISFHVTRGPEI 553
Score = 27.0 bits (59), Expect = 2.8
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 115 HSTVYRCRASNEAGVILSRF 134
++ C + A V L
Sbjct: 8 AVALWLCVETRAASVGLPSV 27
Score = 27.0 bits (59), Expect = 3.0
Identities = 4/31 (12%), Positives = 7/31 (22%), Gaps = 1/31 (3%)
Query: 115 HSTVYRCRASNEAGVILSRF-VHVKADSRIP 144
Y C A + + R+
Sbjct: 636 DQGDYVCLAQDRKTKKRHCVVRQLTVLERVA 666
Score = 25.9 bits (56), Expect = 7.2
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 118 VYRCRASNEAG-VILSRFVHVKADSRIP 144
+Y C AS+ S FV V +
Sbjct: 304 LYTCAASSGLMTKKNSTFVRVHEKPFVA 331
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 32.2 bits (73), Expect = 0.035
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 115 HSTVYRCRASNEAGVILSRFVHV 137
++ + C A N GV SR +
Sbjct: 167 KTSSFSCEAHNAKGVTTSRTATI 189
Score = 30.6 bits (69), Expect = 0.11
Identities = 5/43 (11%), Positives = 12/43 (27%), Gaps = 6/43 (13%)
Query: 95 LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHV 137
+ L + + Y+C +S+ +V
Sbjct: 65 IVVSQLRITSLQLS------DTGQYQCLVFLGHQTFVSQPGYV 101
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 30.7 bits (70), Expect = 0.049
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 12/73 (16%)
Query: 71 EPSQLGWRFSNNTVIAYVKDLRIALSNG--SLMFP-PFPETGFRPDVHSTVYRCRASNEA 127
+ +Q+ W + + + I +G L YRC+ N+
Sbjct: 30 QSTQVTW-YFGVRQLENSEKYEITYEDGVAILYVKDITKL-------DDGTYRCKVVNDY 81
Query: 128 GVILSR-FVHVKA 139
G S + VK
Sbjct: 82 GEDSSYAELFVKG 94
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 30.9 bits (69), Expect = 0.050
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 70 YEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV 129
Y S++ W+ ++ + D I L F E S Y C
Sbjct: 31 YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELE-----QSGYYVCYPRGSKPE 85
Query: 130 ILSRFVHVKA 139
+ +++++A
Sbjct: 86 DANFYLYLRA 95
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 31.7 bits (72), Expect = 0.053
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 15/68 (22%)
Query: 77 WRFSNNTVIAYVKDLRIA-LSNGSLMFPP-FPE-TGFRPDVHSTVYRCRASNEAGVILS- 132
W + +N + + D R A L+N +L G +YRC EA +
Sbjct: 130 WLY-HNEEVTTISDNRFAMLANNNLQILNINKSDEG--------IYRCEGRVEARGEIDF 180
Query: 133 --RFVHVK 138
V V
Sbjct: 181 RDIIVIVN 188
Score = 30.1 bits (68), Expect = 0.15
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 118 VYRCRASNEAGVILSRFVHVK 138
+YRC+A++ G V ++
Sbjct: 72 IYRCQATDAKGQTQEATVVLE 92
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 31.6 bits (71), Expect = 0.060
Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 6/57 (10%)
Query: 72 PSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG 128
Q GW + A V S G + + + C A N+ G
Sbjct: 187 LEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDL------NRKNVTCWAENDVG 237
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 31.2 bits (71), Expect = 0.065
Identities = 8/61 (13%), Positives = 18/61 (29%), Gaps = 6/61 (9%)
Query: 77 WRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 136
W + + + I + L ++ +Y C A+N G +
Sbjct: 41 WTRNKILIKLFDTRYSIRENGQLLTILSVEDS------DDGIYCCTANNGVGGAVESCGA 94
Query: 137 V 137
+
Sbjct: 95 L 95
Score = 28.5 bits (64), Expect = 0.54
Identities = 10/26 (38%), Positives = 11/26 (42%), Gaps = 4/26 (15%)
Query: 118 VYRCRASNEAGVILSRF----VHVKA 139
YRC A N G S+ V V A
Sbjct: 167 QYRCVAKNSLGTAYSKLVKLEVEVFA 192
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 31.6 bits (71), Expect = 0.074
Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 7/65 (10%)
Query: 71 EPSQLGWRFSNNTV-IAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV 129
+ W ++ ++ + RI L F P S Y C N +
Sbjct: 34 HKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVE------DSGHYYCVVRNSSYC 87
Query: 130 ILSRF 134
+ +
Sbjct: 88 LRIKI 92
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 30.0 bits (68), Expect = 0.078
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 115 HSTVYRCRASNEAGVILSRFVHV 137
H Y C N+ S+ V +
Sbjct: 61 HQGTYWCHVYNDRDSQDSKKVEI 83
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 31.6 bits (71), Expect = 0.080
Identities = 9/71 (12%), Positives = 22/71 (30%), Gaps = 11/71 (15%)
Query: 77 WRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF-- 134
W ++ + ++ + + + T RC A NE G +R
Sbjct: 173 WVLCDSQGESCKEESPAVVKKEEKVLHE---------LFGTDIRCCARNELGRECTRLFT 223
Query: 135 VHVKADSRIPM 145
+ + + +
Sbjct: 224 IDLNQTPQTTL 234
Score = 30.1 bits (67), Expect = 0.27
Identities = 4/26 (15%), Positives = 8/26 (30%), Gaps = 1/26 (3%)
Query: 115 HSTVYRCRASNEAGVILSRF-VHVKA 139
+ +C A N G ++
Sbjct: 485 KGFLVKCCAYNSLGTSCETILLNSPG 510
Score = 27.7 bits (61), Expect = 1.5
Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 7/68 (10%)
Query: 77 WRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF-V 135
W F ++++ S++ ET + Y +EA F V
Sbjct: 82 WVFKHSSLNCQPHFDLQNRGVVSMVILKMTET------QAGEYLLFIQSEATNYTILFTV 135
Query: 136 HVKADSRI 143
++
Sbjct: 136 SIRNTLLY 143
Score = 27.7 bits (61), Expect = 1.7
Identities = 4/30 (13%), Positives = 7/30 (23%)
Query: 115 HSTVYRCRASNEAGVILSRFVHVKADSRIP 144
+ Y C +S + K
Sbjct: 301 DTGYYTCSSSKHPSQSALVTIVEKGFINAT 330
Score = 25.4 bits (55), Expect = 8.0
Identities = 5/27 (18%), Positives = 7/27 (25%), Gaps = 3/27 (11%)
Query: 115 HSTVYRCRASNEAGVILSRF---VHVK 138
Y A N+ F + K
Sbjct: 389 QPGEYIFHAENDDAQFTKMFTLNIRRK 415
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 31.3 bits (71), Expect = 0.087
Identities = 12/50 (24%), Positives = 15/50 (30%), Gaps = 7/50 (14%)
Query: 91 LRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR-FVHVKA 139
+ S L + S Y C A N AG S + VK
Sbjct: 340 MSFVESVAVLEM-----YNLSVE-DSGDYTCEAHNAAGSASSSTSLKVKE 383
Score = 30.9 bits (70), Expect = 0.13
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 12/72 (16%)
Query: 77 WRFSNNTVIAYVKDLRIALSN--GSLMFP-PFPETGFRPDVHSTVYRCRASNEAGVILSR 133
W + +T + ++ N SL+ Y C+A N G + S
Sbjct: 39 W-YKEHTKLRSAPAYKMQFKNNVASLVINKVDHS-------DVGEYTCKAENSVGAVASS 90
Query: 134 F-VHVKADSRIP 144
+ +K P
Sbjct: 91 AVLVIKERKLPP 102
Score = 29.0 bits (65), Expect = 0.51
Identities = 12/72 (16%), Positives = 21/72 (29%), Gaps = 12/72 (16%)
Query: 77 WRFSNNTVIAYVKDLRIALS--NGSLMFP-PFPETGFRPDVHSTVYRCRASNEAGVILSR 133
W + ++ +L+ + +L H Y C ASN G S
Sbjct: 135 WYK-DGELLKDDANLQTSFIHNVATLQILQTDQS-------HVGQYNCSASNPLGTASSS 186
Query: 134 F-VHVKADSRIP 144
+ + P
Sbjct: 187 AKLTLSEHEVPP 198
Score = 26.3 bits (58), Expect = 4.8
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 118 VYRCRASNEAGVILSRF-VHVKA 139
Y C ASN AG + V+
Sbjct: 267 QYTCYASNVAGKDSCSAQLGVQE 289
Score = 25.5 bits (56), Expect = 8.0
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 119 YRCRASNEAG-VILSRFVHVKA 139
Y+C+ASN+ G + +KA
Sbjct: 455 YQCKASNDVGSDTCVGSITLKA 476
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 31.0 bits (70), Expect = 0.091
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 6/42 (14%)
Query: 96 SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHV 137
+ L+F + Y CR +N S++ +
Sbjct: 63 NTSELIFNAVHVK------DAGFYVCRVNNNFTFEFSQWSQL 98
Score = 28.7 bits (64), Expect = 0.53
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 115 HSTVYRCRASNEAGVILSRFVHV 137
H Y C N+ S+ V +
Sbjct: 176 HQGTYWCHVYNDRDSQDSKKVEI 198
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 30.8 bits (69), Expect = 0.12
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 64 LTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRA 123
LT + + + W F N+ + + + ++ +N L P + Y+C
Sbjct: 130 LTCLSNDIGANIQWLF-NSQSLQLTERMTLSQNNSILRIDPIKRE------DAGEYQCEI 182
Query: 124 SNEAGVILSRFVHV 137
SN V S + +
Sbjct: 183 SNPVSVRRSNSIKL 196
Score = 27.7 bits (61), Expect = 1.3
Identities = 11/53 (20%), Positives = 15/53 (28%), Gaps = 6/53 (11%)
Query: 93 IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKADSRIPM 145
I SNGSL+F VY ++E V +
Sbjct: 66 IIYSNGSLLFQMITMK------DMGVYTLDMTDENYRRTQATVRFHVHQPVTQ 112
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 30.5 bits (69), Expect = 0.12
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 115 HSTVYRCRASNEAGVILSRF---VHVKADSRIP 144
+TVY+ RA+N+ G + V V A +P
Sbjct: 73 DATVYQVRATNQGGSVSGTASLEVEVPAKIHLP 105
Score = 27.0 bits (60), Expect = 1.8
Identities = 5/22 (22%), Positives = 7/22 (31%), Gaps = 1/22 (4%)
Query: 118 VYRCRASNEAGVILSRF-VHVK 138
Y A N G+ + V
Sbjct: 175 FYVVCAKNRFGIDQKTVELDVA 196
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 30.7 bits (69), Expect = 0.13
Identities = 10/66 (15%), Positives = 15/66 (22%), Gaps = 15/66 (22%)
Query: 77 WRFSNNTVIAYVK---------DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA 127
W+F V + R+ + F + Y C S E
Sbjct: 38 WKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTRE------DTGTYTCMVSEEG 91
Query: 128 GVILSR 133
G
Sbjct: 92 GNSYGE 97
Score = 27.2 bits (60), Expect = 2.0
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 115 HSTVYRCRASNEAGVILSR-FVHVKA 139
+ Y C A N G ++ V ++A
Sbjct: 182 DTGEYSCEARNGYGTPMTSNAVRMEA 207
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 30.6 bits (69), Expect = 0.14
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 8/64 (12%)
Query: 77 WRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF-V 135
W N +I + + SN L + Y CRA+N+AG + +
Sbjct: 38 WFR-NGKLIEENEKYILKGSNTELTVRNIINS------DGGPYVCRATNKAGEDEKQAFL 90
Query: 136 HVKA 139
V
Sbjct: 91 QVFV 94
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 30.5 bits (68), Expect = 0.19
Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 11/58 (18%)
Query: 71 EPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG 128
EP+ W + + + L+ P + +T C +N G
Sbjct: 246 EPTGYNWSTTMGPLPPFAV-----AQGAQLLIRPVDKP------INTTLICNVTNALG 292
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 30.2 bits (68), Expect = 0.20
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 77 WRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF-V 135
W ++ + I +GS D +Y C ASN G I +
Sbjct: 40 WNK-KGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRD--EAIYECVASNNVGEISVSTRL 96
Query: 136 HVKADSRIP 144
V + +IP
Sbjct: 97 TVLREDQIP 105
Score = 29.8 bits (67), Expect = 0.22
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 118 VYRCRASNEAGVILSR--FVHVKA 139
Y C A+N AG S ++V+
Sbjct: 181 KYECVATNSAGTRYSAPANLYVRG 204
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 30.0 bits (67), Expect = 0.22
Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 9/62 (14%)
Query: 77 WRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 136
W ++ + ++ + + ++ T RC A NE G +R
Sbjct: 173 WVLCDSQGESCKEESPAVVKKEEKVLH---------ELFGTDIRCCARNELGRECTRLFT 223
Query: 137 VK 138
+
Sbjct: 224 ID 225
Score = 28.1 bits (62), Expect = 0.97
Identities = 4/28 (14%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 118 VYRCRASNEAGVILSRF-VHVKADSRIP 144
Y A N+ F +++++ ++
Sbjct: 392 EYIFHAENDDAQFTKMFTLNIRSGTKHH 419
Score = 26.6 bits (58), Expect = 3.3
Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 6/52 (11%)
Query: 77 WRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG 128
W F ++++ S++ ET + Y +EA
Sbjct: 82 WVFKHSSLNCQPHFDLQNRGVVSMVILKMTET------QAGEYLLFIQSEAT 127
Score = 26.2 bits (57), Expect = 4.8
Identities = 6/29 (20%), Positives = 9/29 (31%), Gaps = 2/29 (6%)
Query: 115 HSTVYRCRASNEAGVILSRFVHVKADSRI 143
+ Y C +S S V + I
Sbjct: 301 DTGYYTCSSSKHPSQ--SALVTIVEKGFI 327
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 30.1 bits (67), Expect = 0.23
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 102 FPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHV 137
P + GF Y C+ + + S +V
Sbjct: 139 VPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYV 174
Score = 26.6 bits (58), Expect = 3.5
Identities = 7/68 (10%), Positives = 18/68 (26%), Gaps = 10/68 (14%)
Query: 72 PSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPP--FPETGFRPDVHSTVYRCRASNEAGV 129
+ + W + + + + L +TG Y C ++ G+
Sbjct: 25 SAPVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTG--------EYFCTHNDSRGL 76
Query: 130 ILSRFVHV 137
+
Sbjct: 77 ETDERKRL 84
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 29.8 bits (67), Expect = 0.24
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 12/67 (17%)
Query: 77 WRFSNNTVIAYVKDLRIAL-----SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 131
W N ++ RI++ + +L + +Y+C + E G
Sbjct: 37 WFSPNGEKLS-PNQQRISVVWNDDDSSTLTIYNANID------DAGIYKCVVTAEDGTQS 89
Query: 132 SRFVHVK 138
V+VK
Sbjct: 90 EATVNVK 96
Score = 28.7 bits (64), Expect = 0.71
Identities = 13/52 (25%), Positives = 15/52 (28%), Gaps = 6/52 (11%)
Query: 77 WRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG 128
W+ VI I LSN L G + YRC A
Sbjct: 134 WKHKGRDVILKKDVRFIVLSNNYLQI-----RGIKKT-DEGTYRCEGRILAR 179
Score = 27.5 bits (61), Expect = 1.7
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 3/23 (13%)
Query: 119 YRCRASNEAGVILSRF---VHVK 138
Y C A N+AG + V K
Sbjct: 269 YVCIAENKAGEQDASIHLKVFAK 291
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 28.8 bits (65), Expect = 0.29
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 10/70 (14%)
Query: 77 WRFSNNTVIAYVKDLRIALSNGSLMFP-PFPETGFRPDVHSTVYRCRASNEAGVILSR-F 134
W F +N + + + N +L E +Y C+A + G F
Sbjct: 44 W-FKDNETLVEDSGIVLKDGNRNLTIRRVRKE-------DEGLYTCQACSVLGCAKVEAF 95
Query: 135 VHVKADSRIP 144
++
Sbjct: 96 FIIEGAQEKT 105
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 28.9 bits (65), Expect = 0.29
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Query: 118 VYRCRASNEAGVILSRF---VHVKADSRIP 144
Y A NEAGV V + + +P
Sbjct: 87 WYTVSAVNEAGVTTCNTRLDVTARPNQTLP 116
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 29.8 bits (67), Expect = 0.29
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 77 WRFSNNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG 128
W + +N + + D R A L+N +L +YRC EA
Sbjct: 132 WLY-HNEEVTTISDNRFAMLANNNLQI-----LNINKS-DEGIYRCEGRVEAR 177
Score = 29.8 bits (67), Expect = 0.30
Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 8/70 (11%)
Query: 71 EPSQLGWRFSNNTVIAYVKDLRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRASNEAG 128
EP + W I + + + L + +YRC+A++ G
Sbjct: 31 EPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIE------DAGIYRCQATDAKG 84
Query: 129 VILSRFVHVK 138
V ++
Sbjct: 85 QTQEATVVLE 94
Score = 25.9 bits (57), Expect = 5.9
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 119 YRCRASNEAGVILSRF---VHVK 138
Y CRA+N+AG + V V+
Sbjct: 263 YVCRATNKAGEDEKQAFLQVFVQ 285
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 29.6 bits (66), Expect = 0.31
Identities = 9/46 (19%), Positives = 13/46 (28%), Gaps = 6/46 (13%)
Query: 92 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHV 137
R+ + L + S Y CR V+ V V
Sbjct: 55 RVLVGPQRLQVL-----NASHE-DSGAYSCRQRLTQRVLCHFSVRV 94
Score = 28.8 bits (64), Expect = 0.59
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 118 VYRCRASNEAGVILSRF---VHVKADSRIPM 145
Y C N+ G I + V ++ R +
Sbjct: 194 NYTCVVENKFGSIRQTYTLDVLERSPHRPIL 224
Score = 25.7 bits (56), Expect = 5.7
Identities = 6/26 (23%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 115 HSTVYRCRASNEAGVILSR-FVHVKA 139
+ Y C A N G ++ V
Sbjct: 302 DAGEYTCLAGNSIGFSHHSAWLVVLP 327
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 29.6 bits (66), Expect = 0.31
Identities = 5/23 (21%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 118 VYRCRASNEAGVILSRF-VHVKA 139
+Y ++ G SR + +A
Sbjct: 290 IYEVILKDDRGKDKSRLKLVDEA 312
Score = 26.9 bits (59), Expect = 2.7
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 118 VYRCRASNEAGVILSRFVHVKADSRIP 144
+Y C ++ G+ S + + R+
Sbjct: 72 IYSCDVTDTDGIASSYLIDEEELKRLL 98
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 29.8 bits (66), Expect = 0.32
Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 16/93 (17%)
Query: 42 ENEHYPFRIKSAPGGNRTRGLELTRQTRYEPSQLGWRFSNN------TVIAYVKDLRIAL 95
E+E P RIK + + T L W ++ + + + RI+
Sbjct: 21 EDE--PARIKCPLFEHFLKFNYSTAH--SAGLTLIWYWTRQDRDLEEPINFRLPENRISK 76
Query: 96 SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG 128
L F P + Y C N
Sbjct: 77 EKDVLWFRPTLLN------DTGNYTCMLRNTTY 103
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 28.4 bits (64), Expect = 0.34
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 118 VYRCRASNEAGVILSR-FVHVKA 139
+A N AG S F+ V+A
Sbjct: 76 SIMVKAINIAGETSSHAFLLVQA 98
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 29.6 bits (66), Expect = 0.38
Identities = 13/72 (18%), Positives = 19/72 (26%), Gaps = 8/72 (11%)
Query: 68 TRYEPSQLGWRFSNNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNE 126
T E + + + KDLR +M H C E
Sbjct: 139 TDPEVTNYSLKGCQGKPLP--KDLRFIPDPKAGIMIKSVKRAY-----HRLCLHCSVDQE 191
Query: 127 AGVILSRFVHVK 138
+LS +K
Sbjct: 192 GKSVLSEKFILK 203
Score = 27.7 bits (61), Expect = 1.4
Identities = 5/31 (16%), Positives = 10/31 (32%)
Query: 115 HSTVYRCRASNEAGVILSRFVHVKADSRIPM 145
++ Y C + + FV A +
Sbjct: 91 NTGKYTCTNKHGLSNSIYVFVRDPAKLFLVD 121
Score = 27.3 bits (60), Expect = 1.9
Identities = 13/76 (17%), Positives = 19/76 (25%), Gaps = 13/76 (17%)
Query: 71 EPSQLGWRFSNNTVIAYVKDLRIA------LSNGSLMFPPFPETGFRPDVHSTVYRCRAS 124
+P W + N T +D + L T + Y S
Sbjct: 342 KPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHL-----TRLKGT-EGGTYTFLVS 395
Query: 125 NEAGVILSRF-VHVKA 139
N F V+V
Sbjct: 396 NSDVNAAIAFNVYVNT 411
Score = 27.3 bits (60), Expect = 2.1
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 115 HSTVYRCRASNEAGVILSRF-VHVKADSRI 143
H+ C+A N+ G + F K +++
Sbjct: 485 HNGTVECKAYNDVGKTSAYFNFAFKGNNKE 514
Score = 25.8 bits (56), Expect = 6.9
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 115 HSTVYRCRASNEAGVI-LSRFVHVKADSRIPM 145
S V+ C A+N G ++ + V I +
Sbjct: 284 DSGVFMCYANNTFGSANVTTTLEVVDKGFINI 315
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 29.1 bits (65), Expect = 0.39
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 7/59 (11%)
Query: 71 EPSQLGWRFSNNTV-IAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG 128
+ W + V I K ++ +NG+L + Y C S+ +
Sbjct: 38 DDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEAS------DKGNYSCFVSSPSI 90
Score = 29.1 bits (65), Expect = 0.44
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 7/49 (14%)
Query: 92 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF-VHVKA 139
I+ S L + + +Y C A N G + ++V+A
Sbjct: 159 EISTSGAVLKIF-----NIQLE-DEGIYECEAENIRGKDKHQARIYVQA 201
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 28.4 bits (64), Expect = 0.40
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 118 VYRCRASNEAGVILSR-FVHVKAD 140
Y C+A NE G + V+ +
Sbjct: 76 FYTCKAVNEYGARQCEARLEVRGE 99
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 29.1 bits (65), Expect = 0.41
Identities = 5/30 (16%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 115 HSTVYRCRASNEAGVILSR-FVHVKADSRI 143
++ YRC + + ++VK +
Sbjct: 62 NTGTYRCTELEDPMAGSTTIHLYVKDPAHS 91
Score = 28.8 bits (64), Expect = 0.67
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 115 HSTVYRCRASNEAGVILSRFVHVKADSRIP 144
S Y C+ S + +K + P
Sbjct: 155 DSNTYVCKTMVNGRESTSTGIWLKVNRVHP 184
Score = 25.7 bits (56), Expect = 7.1
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 9/33 (27%)
Query: 115 HSTVYRCRASNEAG---------VILSRFVHVK 138
+ +Y C ASN+ G V+ S H
Sbjct: 256 DAGIYSCVASNDVGTRTATMNFQVVESHHHHHH 288
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 28.8 bits (64), Expect = 0.44
Identities = 9/61 (14%), Positives = 15/61 (24%), Gaps = 5/61 (8%)
Query: 77 WRFSNNTVIA-YVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF 134
W A + + +GSL +P C N+ +
Sbjct: 138 WLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLP-KPW--HLPVTCVGKNDKEEAHGVY 194
Query: 135 V 135
V
Sbjct: 195 V 195
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 28.1 bits (63), Expect = 0.46
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 9/49 (18%)
Query: 92 RIALSNGSLMFPP-FPETGFRPDVHSTVYRCRASNEAGVILSRF-VHVK 138
R ++ + P S +Y C S+ +G + F V+V
Sbjct: 48 RTRITGEEVEVQDSVPA-------DSGLYACVTSSPSGSDTTYFSVNVS 89
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 29.1 bits (65), Expect = 0.50
Identities = 5/27 (18%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 118 VYRCRASNEAGVILSRF-VHVKADSRI 143
+Y ++ G SR + +A +
Sbjct: 75 IYEVILKDDRGKDKSRLKLVDEAFKEL 101
Score = 27.6 bits (61), Expect = 1.7
Identities = 7/23 (30%), Positives = 8/23 (34%), Gaps = 1/23 (4%)
Query: 118 VYRCRASNEAGVILSRF-VHVKA 139
Y N+ G S F V V
Sbjct: 293 KYGLVVKNKYGSETSDFTVSVFI 315
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 28.7 bits (64), Expect = 0.51
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 118 VYRCRASNEAGVILSRF-VHVKADSRIP 144
Y C NE G I + + V SR
Sbjct: 90 NYTCVVENEYGSINHTYHLDVVERSRHR 117
Score = 27.9 bits (62), Expect = 0.95
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 119 YRCRASNEAGVILSR-FVHVKADSRIP 144
Y C+ SN G ++ V + P
Sbjct: 200 YICKVSNYIGQANQSAWLTVLPKQQAP 226
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 28.5 bits (64), Expect = 0.54
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 118 VYRCRASNEAGVILSRF-VHVKADSRIP 144
VY C A+NE G + + + ++A +
Sbjct: 77 VYTCIATNEVGEVETSSKLLLQATPQFH 104
Score = 28.5 bits (64), Expect = 0.59
Identities = 6/25 (24%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 115 HSTVYRCRASNEAGVILSRF-VHVK 138
H+ Y+ + SN G + + V ++
Sbjct: 171 HAGKYKVQLSNVFGTVDAILDVEIQ 195
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 27.6 bits (62), Expect = 0.62
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 118 VYRCRASNEAGVILSR-FVHVKA 139
+Y C N AG + S + +KA
Sbjct: 76 LYTCTVKNSAGSVSSSCKLTIKA 98
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 27.7 bits (62), Expect = 0.63
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 118 VYRCRASNEAGVILSR-FVHVKADSRIP 144
Y A+N G I + V+A + P
Sbjct: 80 NYTIMAANPQGRISCTGRLMVQAVNSGP 107
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 27.8 bits (62), Expect = 0.66
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 7/43 (16%)
Query: 96 SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHV 137
+ L+ P Y C A++ + SR V +
Sbjct: 55 PSPVLILPEIGPQ------DQGTYSCVATHSSHGPQESRAVSI 91
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 28.7 bits (64), Expect = 0.67
Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 15/73 (20%)
Query: 71 EPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130
QL + F + LR ++ S +Y C A+ E G +
Sbjct: 201 PGLQLYFSFYMGSKT-----LRGRNTSSEYQILTARRE------DSGLYWCEAATEDGNV 249
Query: 131 LSR----FVHVKA 139
L R + V
Sbjct: 250 LKRSPELELQVLG 262
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 28.2 bits (63), Expect = 0.67
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 115 HSTVYRCRASNEAGVILSRFVHVK 138
HS Y C + + S+ V +
Sbjct: 145 HSGDYHCTGNIGYTLFSSKPVTIT 168
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 28.5 bits (64), Expect = 0.71
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 118 VYRCRASNEAGVILSRF-VHVKADSRIP 144
Y +A+N +G S + VKA++ P
Sbjct: 77 RYSLKATNGSGQATSTAELLVKAETAPP 104
Score = 26.6 bits (59), Expect = 2.7
Identities = 6/22 (27%), Positives = 9/22 (40%), Gaps = 1/22 (4%)
Query: 118 VYRCRASNEAGVILSRF-VHVK 138
Y A+N G S + V+
Sbjct: 173 TYSVNATNSVGRATSTAELLVQ 194
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 28.3 bits (63), Expect = 0.71
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 9/65 (13%)
Query: 76 GWRFSNNTVIAYVKD---LRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 132
GWR + + Y KD L+ N ++ S Y C S
Sbjct: 109 GWRNWDVYKVIYYKDGEALKYWYENHNISITNATVE------DSGTYYCTGKVWQLDYES 162
Query: 133 RFVHV 137
+++
Sbjct: 163 EPLNI 167
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 28.4 bits (63), Expect = 0.82
Identities = 8/73 (10%), Positives = 18/73 (24%), Gaps = 7/73 (9%)
Query: 72 PSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 131
+ + + + + S Y+C A ++
Sbjct: 119 EAGVSLVRVRGRPLMRHTNYSF-SPWHGFTIH-----RAKFI-QSQDYQCSALMGGRKVM 171
Query: 132 SRFVHVKADSRIP 144
S + +K IP
Sbjct: 172 SISIRLKVQKVIP 184
Score = 28.4 bits (63), Expect = 0.87
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 115 HSTVYRCRASNEAGVILSR-FVHVKADSRI 143
++ YRC + + ++VK +R
Sbjct: 62 NTGTYRCTEPGDPLGGSAAIHLYVKDPARP 91
Score = 25.7 bits (56), Expect = 5.8
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 115 HSTVYRCRASNEAGVI-LSRFVHVKADSRI 143
H+ Y C ASN G S F V +
Sbjct: 256 HAGNYSCVASNVQGKHSTSMFFRVVESAGN 285
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 27.3 bits (61), Expect = 0.86
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 118 VYRCRASNEAGVILSRF-VHVKADSRIP 144
+Y C A+N AG + V A P
Sbjct: 80 IYTCIATNRAGQNSFSLELVVAAKESGP 107
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 27.1 bits (60), Expect = 0.92
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 92 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF 134
R ++ + P S +Y C S+ +G + F
Sbjct: 54 RTRITGEEVEVR-----DSIPA-DSGLYACVTSSPSGSDTTYF 90
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 28.0 bits (62), Expect = 0.99
Identities = 9/69 (13%), Positives = 23/69 (33%), Gaps = 8/69 (11%)
Query: 72 PSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 131
+ + W + I+ + +L+ F + + +Y ++ G
Sbjct: 146 ETHIVWYK-DEREISVDEKHDFKDGICTLLITEFSKK------DAGIYEVILKDDRGKDK 198
Query: 132 SRF-VHVKA 139
SR + +A
Sbjct: 199 SRLKLVDEA 207
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 27.3 bits (61), Expect = 0.99
Identities = 5/23 (21%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 118 VYRCRASNEAGVILSR-FVHVKA 139
+Y NE G + +H+++
Sbjct: 77 LYTLSLGNEFGSDSATVNIHIRS 99
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 28.3 bits (62), Expect = 1.0
Identities = 5/14 (35%), Positives = 6/14 (42%)
Query: 115 HSTVYRCRASNEAG 128
Y CRA + G
Sbjct: 424 LEGTYLCRARSTQG 437
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 27.8 bits (62), Expect = 1.2
Identities = 15/59 (25%), Positives = 18/59 (30%), Gaps = 11/59 (18%)
Query: 77 WRFSNNTVIAYVKDLRIAL--SNGSLMFPP-FPETGFRPDVHSTVYRCRASNEAGVILS 132
W + T I R++ S L E S Y C A N AG S
Sbjct: 133 WYK-DETEIQESSKFRMSFVESVAVLEMYNLSVE-------DSGDYTCEAHNAAGSASS 183
Score = 27.8 bits (62), Expect = 1.2
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 7/50 (14%)
Query: 91 LRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR-FVHVKA 139
+ + + +L + + Y C ASN AG + V+
Sbjct: 54 MTLVENTATLTVLKVTKG------DAGQYTCYASNVAGKDSCSAQLGVQE 97
Score = 27.4 bits (61), Expect = 1.5
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 118 VYRCRASNEAGVILSRF-VHVKA 139
Y+C+ASN+ G + +KA
Sbjct: 262 EYQCKASNDVGSYTCVGSITLKA 284
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 27.5 bits (61), Expect = 1.3
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 115 HSTVYRCRASNEAGVILSRFVHV 137
S Y CR + + S V++
Sbjct: 148 DSGSYFCRGLVGSKNVSSETVNI 170
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 27.8 bits (61), Expect = 1.4
Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 10/58 (17%)
Query: 71 EPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG 128
++ W N ++ + N +L F + Y C A+N G
Sbjct: 261 PATEYHWTTLNGSLPK-----GVEAQNRTLFFKGPINYS-----LAGTYICEATNPIG 308
Score = 27.0 bits (59), Expect = 2.8
Identities = 7/62 (11%), Positives = 9/62 (14%), Gaps = 9/62 (14%)
Query: 72 PSQLGWRFSNN---TVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG 128
PS + W P E H C +
Sbjct: 165 PSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREA------HQQSLACIVNYHMD 218
Query: 129 VI 130
Sbjct: 219 RF 220
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 27.5 bits (61), Expect = 1.4
Identities = 7/23 (30%), Positives = 8/23 (34%), Gaps = 3/23 (13%)
Query: 118 VYRCRASNEAGVILSRF---VHV 137
Y C A+N G V V
Sbjct: 168 EYECNATNSIGSASVSTVLRVRV 190
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 27.6 bits (61), Expect = 1.4
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 119 YRCRASNEAGVILSR-FVHVKADSRIP 144
Y CRA+N GV ++ V
Sbjct: 197 YLCRATNFIGVAEKAFWLSVHGPRAAE 223
Score = 26.1 bits (57), Expect = 4.9
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 118 VYRCRASNEAGVI 130
Y C N+ G I
Sbjct: 86 NYTCVVENKFGSI 98
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 26.7 bits (59), Expect = 1.5
Identities = 11/49 (22%), Positives = 14/49 (28%), Gaps = 9/49 (18%)
Query: 92 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF---VHV 137
R NG L +P + Y C SN + V V
Sbjct: 56 RAMDFNGILTIR-----NVQPS-DAGTYVCTGSNMFAMDQGTATLHVQV 98
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 27.8 bits (61), Expect = 1.5
Identities = 10/71 (14%), Positives = 18/71 (25%), Gaps = 6/71 (8%)
Query: 68 TRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA 127
T + SQ + + G + + H RC A +
Sbjct: 116 TDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIK------NVKRAYHRLCVRCAAQRDG 169
Query: 128 GVILSRFVHVK 138
+ S +K
Sbjct: 170 TWLHSDKFTLK 180
Score = 26.6 bits (58), Expect = 3.6
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 115 HSTVYRCRASNEAGVILSRFVHVKADSRIPM 145
+ Y C SN + FV A +
Sbjct: 68 RTGTYTCSNSNGLTSSIYVFVRDPAKLFLVG 98
Score = 25.5 bits (55), Expect = 9.1
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 115 HSTVYRCRASNEAGV 129
S V+ C A+N G
Sbjct: 263 DSGVFMCYANNTFGS 277
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 26.6 bits (59), Expect = 1.5
Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 15/58 (25%)
Query: 77 WRFSNNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHST---VYRCRASNEAGVI 130
W T +D R G+L ++ + Y C A++ +G
Sbjct: 42 WLKEGFTFPG--RDPRATIQEQGTLQIK---------NLRISDTGTYTCVATSSSGET 88
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 27.8 bits (61), Expect = 1.6
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 115 HSTVYRCRASNEAGVILSRFVHV 137
+ YRC E GV +S + +
Sbjct: 234 DAGKYRCMIRTEGGVGISNYAEL 256
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 27.0 bits (60), Expect = 1.6
Identities = 9/34 (26%), Positives = 11/34 (32%), Gaps = 6/34 (17%)
Query: 95 LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG 128
L NG L + Y C AS +G
Sbjct: 59 LENGVLQIRYAKLG------DTGRYTCIASTPSG 86
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 27.4 bits (61), Expect = 1.7
Identities = 9/32 (28%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 115 HSTVYRCRASNEAGVILSR-FVHVKADSRIPM 145
+TVY+ RA+N+ G + + V+ ++I +
Sbjct: 73 DATVYQVRATNQGGSVSGTASLEVEVPAKIHL 104
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 27.2 bits (60), Expect = 1.7
Identities = 14/95 (14%), Positives = 24/95 (25%), Gaps = 13/95 (13%)
Query: 45 HYPFRIKSAPGGNRTRG--LELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMF 102
H + + AP + L + + + N K + N
Sbjct: 87 HIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNG-----KGRKYFHHNSDFYI 141
Query: 103 PPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHV 137
P S Y CR + + S V +
Sbjct: 142 PKATLK------DSGSYFCRGLVGSKNVSSETVQI 170
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 26.9 bits (59), Expect = 1.7
Identities = 5/28 (17%), Positives = 9/28 (32%), Gaps = 1/28 (3%)
Query: 118 VYRCRASNEAGVILSRF-VHVKADSRIP 144
YRC + + F + V +
Sbjct: 89 NYRCEVTYKDKFDSCSFDLEVHESTGTT 116
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 26.6 bits (59), Expect = 1.8
Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 118 VYRCRASNEAGVILSR-FVHVKA 139
VY CRA N AG + V V
Sbjct: 83 VYVCRARNAAGEAYAAAAVTVLE 105
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 26.3 bits (58), Expect = 1.9
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 118 VYRCRASNEAGVI 130
Y C NE G I
Sbjct: 79 NYTCVVENEYGSI 91
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 26.7 bits (59), Expect = 2.2
Identities = 6/28 (21%), Positives = 10/28 (35%), Gaps = 1/28 (3%)
Query: 118 VYRCRASNEAGVILSR-FVHVKADSRIP 144
Y C+A N G + V+ +
Sbjct: 112 KYTCKAVNSLGEATCTAELLVETMGKEG 139
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 26.5 bits (58), Expect = 2.2
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 118 VYRCRASNEAGVILSRF 134
YRC S + S F
Sbjct: 86 SYRCEVSTKDKFDCSNF 102
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 26.2 bits (58), Expect = 2.3
Identities = 3/24 (12%), Positives = 7/24 (29%), Gaps = 1/24 (4%)
Query: 115 HSTVYRCRASNEAGVILSRFVHVK 138
S Y E + + ++
Sbjct: 90 DSGEYELSVQIENMKD-TATIRIR 112
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 26.1 bits (58), Expect = 2.3
Identities = 8/23 (34%), Positives = 9/23 (39%), Gaps = 1/23 (4%)
Query: 118 VYRCRASNEAGVILSRF-VHVKA 139
Y C A N AG + V A
Sbjct: 76 AYACVAKNRAGEATFTVQLDVLA 98
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 26.1 bits (58), Expect = 2.4
Identities = 5/23 (21%), Positives = 7/23 (30%), Gaps = 1/23 (4%)
Query: 118 VYRCRASNEAGVILSR-FVHVKA 139
YR +N G + V
Sbjct: 78 TYRAVCTNYKGEASDYATLDVTG 100
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 26.4 bits (58), Expect = 2.5
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 115 HSTVYRCRASNEAG 128
T+Y C A N G
Sbjct: 88 FQTIYNCTAWNSFG 101
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 26.5 bits (58), Expect = 2.6
Identities = 4/14 (28%), Positives = 6/14 (42%)
Query: 115 HSTVYRCRASNEAG 128
YRC ++ G
Sbjct: 158 DPGQYRCNGTSSKG 171
Score = 25.4 bits (55), Expect = 8.2
Identities = 4/24 (16%), Positives = 6/24 (25%)
Query: 115 HSTVYRCRASNEAGVILSRFVHVK 138
Y C E + +H
Sbjct: 60 QWGEYSCVFLPEPMGTANIQLHGP 83
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 26.5 bits (58), Expect = 2.7
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 118 VYRCRASNEAGVILSR 133
Y CRASN+
Sbjct: 104 TYECRASNDPDRNHLT 119
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 26.8 bits (59), Expect = 2.9
Identities = 3/11 (27%), Positives = 4/11 (36%)
Query: 118 VYRCRASNEAG 128
Y N+ G
Sbjct: 188 KYGLVVKNKYG 198
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 25.8 bits (57), Expect = 3.0
Identities = 3/13 (23%), Positives = 3/13 (23%)
Query: 118 VYRCRASNEAGVI 130
Y N G
Sbjct: 84 NYSVVVENSEGKQ 96
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 25.7 bits (57), Expect = 3.0
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 118 VYRCRASNEAGVILSRF-VHVK 138
Y+ + NE G + F V V+
Sbjct: 72 NYKLKVKNELGEDEAIFEVIVQ 93
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 25.7 bits (57), Expect = 3.6
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 118 VYRCRASNEAGVI 130
Y C A N G +
Sbjct: 78 TYTCLAENALGQV 90
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 25.5 bits (56), Expect = 4.3
Identities = 5/11 (45%), Positives = 5/11 (45%)
Query: 118 VYRCRASNEAG 128
Y A NE G
Sbjct: 76 DYTLIAKNEYG 86
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 25.9 bits (56), Expect = 4.6
Identities = 6/21 (28%), Positives = 7/21 (33%), Gaps = 1/21 (4%)
Query: 118 VYRCRASNEAGVILSRFVHVK 138
VY N G + VK
Sbjct: 117 VYTVTVKNPVGED-QVNLTVK 136
>2vk9_A Alpha-toxin; glycosyltransferase; 2.85A {Clostridium novyi} SCOP:
c.68.1.22
Length = 551
Score = 26.3 bits (56), Expect = 5.3
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 57 NRTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMF----PPFPETGFRP 112
NR L Q +++ + + N+ ++ LS F + +GF+P
Sbjct: 407 NRYEILNSIIQEKFKICETYDSYINSVSELVLETTPKNLSMDGSSFYQQIIGYLSSGFKP 466
Query: 113 DVHSTVY 119
+V+STV+
Sbjct: 467 EVNSTVF 473
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 25.6 bits (56), Expect = 5.3
Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 7/78 (8%)
Query: 68 TRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA 127
+ + +F KD NG+L +Y+ +
Sbjct: 36 EKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTD------DQDIYKVSIYDTK 89
Query: 128 G-VILSRFVHVKADSRIP 144
G +L + +K R+
Sbjct: 90 GKNVLEKIFDLKIQERVS 107
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 25.2 bits (55), Expect = 5.5
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 8/54 (14%)
Query: 76 GWRFSNNTVIAYVKDLRIALSNGSLMFP-PFPETGFRPDVHSTVYRCRASNEAG 128
G + +I +S G L+F P ++ Y A N G
Sbjct: 43 GQPLRESKIIHVEYYQEGEISEGCLLFNKPTHY-------NNGNYTLIAKNPLG 89
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 25.3 bits (55), Expect = 6.1
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 118 VYRCRASNEAGVI 130
Y A+N G
Sbjct: 77 NYTLLAANPFGQA 89
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 25.3 bits (54), Expect = 8.8
Identities = 7/69 (10%), Positives = 17/69 (24%), Gaps = 6/69 (8%)
Query: 62 LELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRC 121
E Y+P +F + + +L+ + + C
Sbjct: 177 FENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVI-----RAAKIT-DAGRVWC 230
Query: 122 RASNEAGVI 130
+ G +
Sbjct: 231 ELATGQGEL 239
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 25.2 bits (55), Expect = 9.1
Identities = 5/14 (35%), Positives = 5/14 (35%)
Query: 115 HSTVYRCRASNEAG 128
Y C A N G
Sbjct: 87 DFGNYNCTAVNRIG 100
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 25.1 bits (54), Expect = 9.8
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 113 DVHSTVYRCRASNEAGVILSRFVHV 137
+ + +++C S+ V+L + V
Sbjct: 337 NPEAGMWQCLLSDSGQVLLESNIKV 361
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 24.6 bits (54), Expect = 9.9
Identities = 4/14 (28%), Positives = 5/14 (35%)
Query: 115 HSTVYRCRASNEAG 128
H Y N+ G
Sbjct: 74 HCGCYTLLVENKLG 87
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 25.2 bits (55), Expect = 9.9
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 115 HSTVYRCRASNEAGVILSRF 134
Y C A+N G +
Sbjct: 169 DFGRYNCTATNHIGTRFQEY 188
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.417
Gapped
Lambda K H
0.267 0.0574 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,153,918
Number of extensions: 113976
Number of successful extensions: 457
Number of sequences better than 10.0: 1
Number of HSP's gapped: 454
Number of HSP's successfully gapped: 225
Length of query: 145
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 60
Effective length of database: 4,328,508
Effective search space: 259710480
Effective search space used: 259710480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.2 bits)