RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5697
(145 letters)
>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 33.4 bits (75), Expect = 0.002
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 115 HSTVYRCRASNEAGVILSRFVHVK 138
+ Y C+ + +S+ V +
Sbjct: 65 DAGRYWCQVEDGGETEISQPVWLT 88
>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 94
Score = 33.5 bits (75), Expect = 0.002
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 115 HSTVYRCRASNEAGVILSRFVHVK 138
Y+C A AGV SR + +
Sbjct: 69 DEGHYQCFAETPAGVASSRVISFR 92
>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 97
Score = 31.8 bits (71), Expect = 0.008
Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 5/87 (5%)
Query: 52 SAPGGNRTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFR 111
P G+ + LT + R P N T + D R L G L+
Sbjct: 15 LFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPV----- 69
Query: 112 PDVHSTVYRCRASNEAGVILSRFVHVK 138
+ Y+C A+N G ++SR ++
Sbjct: 70 KAKDAGSYQCVATNARGTVVSREASLR 96
>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 89
Score = 30.2 bits (67), Expect = 0.025
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 115 HSTVYRCRASNEAGVILSRF-VHVKA 139
S +Y+C A N+ G + + + V+A
Sbjct: 64 DSGMYQCVAENKHGTVYASAELTVQA 89
>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein
phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 30.4 bits (67), Expect = 0.026
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 115 HSTVYRCRASNEAGVILSRFVHV 137
+ YRC E GV +S + +
Sbjct: 71 DAGKYRCMIRTEGGVGISNYAEL 93
>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 30.0 bits (66), Expect = 0.040
Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 4/76 (5%)
Query: 68 TRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDV---HSTVYRCRAS 124
P F + V+ A SN S + P + + Y C A
Sbjct: 27 QDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEAR 86
Query: 125 NEAG-VILSRFVHVKA 139
N G + S V ++A
Sbjct: 87 NGYGTPMTSNAVRMEA 102
>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId:
9103]}
Length = 102
Score = 29.5 bits (65), Expect = 0.070
Identities = 6/26 (23%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 115 HSTVYRCRASNEAGVILSRF-VHVKA 139
Y C+A N G + V+
Sbjct: 76 DDAKYTCKAVNSLGEATCTAELLVET 101
>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules
[TaxId: 9606]}
Length = 91
Score = 28.7 bits (63), Expect = 0.10
Identities = 4/25 (16%), Positives = 8/25 (32%), Gaps = 1/25 (4%)
Query: 115 HSTVYRCRASNEAGVILSRF-VHVK 138
Y N G + F + ++
Sbjct: 66 DEGNYSVVVENSEGKQEAEFTLTIQ 90
>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 100
Score = 28.3 bits (62), Expect = 0.18
Identities = 8/27 (29%), Positives = 10/27 (37%), Gaps = 3/27 (11%)
Query: 115 HSTVYRCRASNEAGVILSRF---VHVK 138
Y C A N+AG + V K
Sbjct: 74 DEAEYVCIAENKAGEQDASIHLKVFAK 100
>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules
[TaxId: 9606]}
Length = 98
Score = 27.9 bits (61), Expect = 0.19
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 115 HSTVYRCRASNEAGVILSR-FVHVKA 139
S +A N AG S F+ V+A
Sbjct: 72 DSASIMVKAINIAGETSSHAFLLVQA 97
>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 91
Score = 27.9 bits (61), Expect = 0.21
Identities = 6/26 (23%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 115 HSTVYRCRASNEAGVILSRF-VHVKA 139
Y C A N G + + + A
Sbjct: 66 DEGTYECEAENIKGRDTYQGRIIIHA 91
>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 27.3 bits (59), Expect = 0.33
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 115 HSTVYRCRASNEAGVILSRFVHV 137
+ YRC A+ ++ +I S +
Sbjct: 76 DNGSYRCSANFQSNLIESHSTTL 98
>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32)
{Human (Homo sapiens), IIb [TaxId: 9606]}
Length = 88
Score = 27.2 bits (59), Expect = 0.33
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 115 HSTVYRCRASNEAGVILSRFVHV 137
HS Y C + + S+ V +
Sbjct: 60 HSGDYHCTGNIGYTLYSSKPVTI 82
>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C,
different domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 27.3 bits (59), Expect = 0.44
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 115 HSTVYRCRASNEAGVILSRF-VHVKA 139
+ YRC S + S F + V
Sbjct: 83 FTGGYRCEVSTKDKFDCSNFNLTVHE 108
>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 89
Score = 26.6 bits (58), Expect = 0.44
Identities = 9/24 (37%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 115 HSTVYRCRASNEAGVILSRF-VHV 137
Y CRA+NE G V V
Sbjct: 65 DKGYYGCRATNEHGDKYFETLVQV 88
>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3,
second domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 26.5 bits (57), Expect = 0.62
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 115 HSTVYRCRASNEAGVILSRFVHVK 138
ST++ C A N G+ SR V
Sbjct: 60 QSTMFSCEAHNLKGLASSRTATVH 83
>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens)
[TaxId: 9606]}
Length = 101
Score = 26.6 bits (57), Expect = 0.66
Identities = 5/25 (20%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 115 HSTVYRCRASNEAGVILSRF-VHVK 138
YRC ++ G + + V+
Sbjct: 77 DPGQYRCNGTSSKGSDQAIITLRVR 101
>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans)
[TaxId: 6239]}
Length = 93
Score = 26.5 bits (57), Expect = 0.69
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 115 HSTVYRCRASNEAGVILSRF-VHVK 138
S Y+ + NE G + F V V+
Sbjct: 69 DSGNYKLKVKNELGEDEAIFEVIVQ 93
>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 115
Score = 26.6 bits (57), Expect = 0.71
Identities = 6/30 (20%), Positives = 9/30 (30%), Gaps = 1/30 (3%)
Query: 111 RPDVHSTVYRCRASNEAGVILSRF-VHVKA 139
T+Y C A N G + +
Sbjct: 77 VRADFQTIYNCTAWNSFGSDTEIIRLKEQG 106
>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR
{Human (Homo sapiens), FGFR2a [TaxId: 9606]}
Length = 97
Score = 26.3 bits (57), Expect = 0.79
Identities = 7/24 (29%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 115 HSTVYRCRASNEAGVILSRF-VHV 137
Y C NE G I + + V
Sbjct: 73 DKGNYTCVVENEYGSINHTYHLDV 96
>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM,
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 110
Score = 26.5 bits (57), Expect = 0.82
Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 4/74 (5%)
Query: 72 PSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDV---HSTVYRCRASNEAG 128
PS+ W +++ A N S P V S Y C+A N G
Sbjct: 32 PSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG 91
Query: 129 -VILSRFVHVKADS 141
+ S H+ A
Sbjct: 92 TAMRSEAAHMDAVE 105
>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId:
9606]}
Length = 101
Score = 26.3 bits (57), Expect = 0.85
Identities = 5/26 (19%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 115 HSTVYRCRASNEAGVILSRF-VHVKA 139
H Y N+ G ++ + V
Sbjct: 67 HCGCYTLLVENKLGSRQAQVNLTVVD 92
>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis
elegans) [TaxId: 6239]}
Length = 97
Score = 26.0 bits (56), Expect = 0.85
Identities = 6/25 (24%), Positives = 8/25 (32%), Gaps = 1/25 (4%)
Query: 115 HSTVYRCRASNEAGVILSRF-VHVK 138
Y RA N G ++V
Sbjct: 68 DKGEYTVRAKNSYGTKEEIVFLNVT 92
>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 92
Score = 26.0 bits (56), Expect = 0.93
Identities = 7/24 (29%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 115 HSTVYRCRASNEA-GVILSRFVHV 137
YRC A G I + + V
Sbjct: 67 DEGTYRCEGRILARGEINFKDIQV 90
>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 97
Score = 26.0 bits (56), Expect = 1.1
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 115 HSTVYRCRASNEAGVILSRFVHVK 138
VY C N G + +
Sbjct: 72 DEGVYTCEVDNGVGKPQKHSLKLT 95
>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 89
Score = 25.3 bits (54), Expect = 1.4
Identities = 6/25 (24%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 115 HSTVYRCRASNEAGVILSRF-VHVK 138
+ Y C SN + +HV+
Sbjct: 65 DAGTYVCTGSNMFAMDQGTATLHVQ 89
>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM,
N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 102
Score = 25.4 bits (54), Expect = 1.6
Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 13/96 (13%)
Query: 36 VYSSRSE---NEHYPFRIKSAPGGNRTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLR 92
VY+++S+ E+ ++ G + + ++ N+ I R
Sbjct: 4 VYTAQSDVQVPENESIKLTCTYSGFSS----PRVEWKFVQGSTTALVCYNSQITAPYADR 59
Query: 93 IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG 128
+ S+ + F + Y C S E G
Sbjct: 60 VTFSSSGITFSSVTRK------DNGEYTCMVSEEGG 89
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 25.0 bits (53), Expect = 2.3
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 115 HSTVYRCRASNEAGVILSRFVHV 137
S Y C S +++
Sbjct: 60 DSGTYYCTGKVWQLDYESEPLNI 82
>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 25.4 bits (54), Expect = 2.5
Identities = 6/24 (25%), Positives = 6/24 (25%), Gaps = 1/24 (4%)
Query: 115 HSTVYRCRASNEAGVILSRF-VHV 137
VY N G V V
Sbjct: 105 DEGVYTVTVKNPVGEDQVNLTVKV 128
>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 24.6 bits (52), Expect = 3.3
Identities = 5/31 (16%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 115 HSTVYRCRASNEAGVILSRF-VHVKADSRIP 144
+ YRC + + F + V +
Sbjct: 79 FAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 109
>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 24.3 bits (51), Expect = 4.1
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 108 TGFRPDVHSTVYRCRASNEAGVI 130
+ + + C A N G+
Sbjct: 75 SEIESRFYKHPFTCFAKNTHGID 97
>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}
Length = 109
Score = 24.6 bits (52), Expect = 4.2
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 115 HSTVYRCRASNEAGVILSRF 134
+ Y C A N G+
Sbjct: 85 DAGEYTCLAGNSIGISFHSA 104
>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1
(ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 23.7 bits (50), Expect = 7.5
Identities = 4/16 (25%), Positives = 6/16 (37%)
Query: 113 DVHSTVYRCRASNEAG 128
D H + CR +
Sbjct: 69 DHHGAQFSCRTELDLR 84
>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 111
Score = 23.5 bits (49), Expect = 7.6
Identities = 5/14 (35%), Positives = 5/14 (35%)
Query: 115 HSTVYRCRASNEAG 128
Y C A N A
Sbjct: 77 DIYKYVCTAKNAAV 90
>d2pvaa_ d.153.1.3 (A:) Penicillin V acylase {Bacillus sphaericus
[TaxId: 1421]}
Length = 342
Score = 24.2 bits (52), Expect = 8.4
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 86 AYVKDLRIALSNGSLMFPPFPETGFRPDVH 115
V D+ L++ +L+ GF P +H
Sbjct: 124 VTVDDVIEKLTSYTLLNEANIILGFAPPLH 153
>d1a0pa1 a.60.9.1 (A:3-100) Recombinase XerD {Escherichia coli
[TaxId: 562]}
Length = 98
Score = 23.2 bits (49), Expect = 8.4
Identities = 9/62 (14%), Positives = 16/62 (25%)
Query: 78 RFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHV 137
+ NT+ AY +DL + + R +A V
Sbjct: 18 NLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSAV 77
Query: 138 KA 139
+
Sbjct: 78 RR 79
>d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast
(Saccharomyces pastorianus) [TaxId: 27292]}
Length = 399
Score = 24.1 bits (51), Expect = 9.2
Identities = 8/52 (15%), Positives = 15/52 (28%)
Query: 92 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKADSRI 143
R + + M P D Y RA +I++ + +
Sbjct: 30 RAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGG 81
>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 105
Score = 23.1 bits (48), Expect = 9.9
Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 10/46 (21%)
Query: 96 SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV----ILSRFVHV 137
+ G+L + Y C A++ + S+F +
Sbjct: 59 TTGNLYIAKTEAS------DLGNYSCFATSHIDFITKSVFSKFSQL 98
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.417
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 517,067
Number of extensions: 21317
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 40
Length of query: 145
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,350,386
Effective search space: 91826248
Effective search space used: 91826248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.2 bits)