BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy57
(135 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q00174|LAMA_DROME Laminin subunit alpha OS=Drosophila melanogaster GN=LanA PE=1 SV=2
Length = 3712
Score = 202 bits (514), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 93/133 (69%), Positives = 108/133 (81%), Gaps = 1/133 (0%)
Query: 4 EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
E +I + LL+ RPS N+FNST LQEWTRATNVR+RLLRTKNLLGHLMS+A QDPT TR
Sbjct: 199 ENGEIPVMLLNERPSSTNYFNSTVLQEWTRATNVRIRLLRTKNLLGHLMSVARQDPTVTR 258
Query: 64 RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRI-CRCQHNTCGHNCEVCCPGYEQKA 122
RYFYSIKDISIGGRC CNGHAD CD+ DP+ P + CRCQH+TCG C CCPG+EQK
Sbjct: 259 RYFYSIKDISIGGRCMCNGHADTCDVKDPKSPVRILACRCQHHTCGIQCNECCPGFEQKK 318
Query: 123 WRQSQSNKPFSCE 135
WRQ+ + +PF+CE
Sbjct: 319 WRQNTNARPFNCE 331
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 78 CRCNGHADVCDILDPEDPYHRIC-RCQHNTCGHNCEVCCPGYEQKA 122
C CNGH++ CD IC +CQH T G +CE C GY A
Sbjct: 1809 CECNGHSETCDCAT------GICSKCQHGTEGDHCERCVSGYYGNA 1848
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 16/74 (21%)
Query: 78 CRCNGHADVCDI----------LDPEDPYHR--ICR-CQHNTCGHNCEVCCPGY---EQK 121
C C+GH++ C LD Y +C+ CQHNT G NC C P Y + K
Sbjct: 333 CNCHGHSNECKYDEEVNRKGLSLDIHGHYDGGGVCQNCQHNTVGINCNKCKPKYYRPKGK 392
Query: 122 AWRQSQSNKPFSCE 135
W ++ P C+
Sbjct: 393 HWNETDVCSPCQCD 406
>sp|O15230|LAMA5_HUMAN Laminin subunit alpha-5 OS=Homo sapiens GN=LAMA5 PE=1 SV=8
Length = 3695
Score = 167 bits (423), Expect = 2e-41, Method: Composition-based stats.
Identities = 76/132 (57%), Positives = 94/132 (71%)
Query: 4 EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
E +I +SL++ RP NF S L+E+T+ATNVRLR LRT LLGHLM A +DPT TR
Sbjct: 226 ENGEIVVSLVNGRPGAMNFSYSPLLREFTKATNVRLRFLRTNTLLGHLMGKALRDPTVTR 285
Query: 64 RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
RY+YSIKDISIGGRC C+GHAD CD DP DP+ C CQHNTCG C+ CCPG+ Q+ W
Sbjct: 286 RYYYSIKDISIGGRCVCHGHADACDAKDPTDPFRLQCTCQHNTCGGTCDRCCPGFNQQPW 345
Query: 124 RQSQSNKPFSCE 135
+ + +N C+
Sbjct: 346 KPATANSANECQ 357
Score = 35.4 bits (80), Expect = 0.095, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 7/42 (16%)
Query: 78 CRCNGHADVCDILDPEDPYHRIC-RCQHNTCGHNCEVCCPGY 118
C+C+GH+D C P +C CQHNT G +CE C G+
Sbjct: 1864 CQCHGHSDRCL------PGSGVCVDCQHNTEGAHCERCQAGF 1899
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 78 CRCNGHADVCDILDPEDPYHRICR-CQHNTCGHNCEVCCPGY 118
C C+G+ D + DP CR C +T G CE+C PG+
Sbjct: 1969 CDCSGNGDPNLLFSDCDPLTGACRGCLRHTTGPRCEICAPGF 2010
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 78 CRCNGHADVCDILDPE-DPYHRICRCQHNTCGHNCEVCCPGY 118
C C+G + ++ DP D C+C+ N G C+ C PG+
Sbjct: 1528 CNCSGPG-IQELTDPTCDTDSGQCKCRPNVTGRRCDTCSPGF 1568
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 93 EDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKP 131
+DP C C+ N G +CE+C PG+ + Q + P
Sbjct: 508 KDPRVGRCLCKPNFQGTHCELCAPGFYGPGCQPCQCSSP 546
>sp|Q21313|EPI1_CAEEL Laminin-like protein epi-1 OS=Caenorhabditis elegans GN=epi-1 PE=1
SV=1
Length = 3672
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 77/133 (57%), Positives = 98/133 (73%), Gaps = 1/133 (0%)
Query: 4 EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMAD-QDPTTT 62
E ++ I +L+HRPS + F S LQ +TRATNVRLRLL T+ L GHLM M + +DPT T
Sbjct: 223 ENAEMVIRILEHRPSSRQFATSEALQNFTRATNVRLRLLGTRTLQGHLMDMNEWRDPTVT 282
Query: 63 RRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKA 122
RRYFY+IK+I IGGRC CNGHA CDIL+P+ P +CRC+HNTCG CE CCPG+ QK
Sbjct: 283 RRYFYAIKEIMIGGRCVCNGHAVTCDILEPQRPKSLLCRCEHNTCGDMCERCCPGFVQKQ 342
Query: 123 WRQSQSNKPFSCE 135
W+ + ++ F+CE
Sbjct: 343 WQAATAHNNFTCE 355
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 11/58 (18%)
Query: 78 CRCNGHADVCDILDPEDPYHRICR-CQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSC 134
C CNGH+ CD P IC C+HNT G +CE C G+ + + + P+ C
Sbjct: 1830 CECNGHSATCD------PDTGICTDCEHNTNGDHCEFCNEGH----YGNATNGSPYDC 1877
>sp|Q61001|LAMA5_MOUSE Laminin subunit alpha-5 OS=Mus musculus GN=Lama5 PE=1 SV=4
Length = 3718
Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 74/132 (56%), Positives = 96/132 (72%)
Query: 4 EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
E +I +SL++ RP NF S L+++T+ATN+RLR LRT LLGHLM A +DPT TR
Sbjct: 231 ENGEIVVSLVNGRPGALNFSYSPLLRDFTKATNIRLRFLRTNTLLGHLMGKALRDPTVTR 290
Query: 64 RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
RY+YSIKDISIGGRC C+GHADVCD DP DP+ C CQHNTCG +C+ CCPG+ Q+ W
Sbjct: 291 RYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPW 350
Query: 124 RQSQSNKPFSCE 135
+ + ++ C+
Sbjct: 351 KPATTDSANECQ 362
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 65 YFYSIKDISIG--GRCRCNGHADVCDILDPEDPYHRIC-RCQHNTCGHNCEVCCPGY 118
Y+ K + +G C+C+GH+D C P IC CQHNT G CE C PG+
Sbjct: 1850 YYRDTKGLFLGRCVPCQCHGHSDRCL------PGSGICVGCQHNTEGDQCERCRPGF 1900
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 78 CRCNGHADVCDILDPEDPYHRICR-CQHNTCGHNCEVCCPGYEQKA 122
C C+G+ D I DP CR C +T G +CE C PG+ A
Sbjct: 1971 CDCSGNGDPNMIFSDCDPLTGACRGCLRHTTGPHCERCAPGFYGNA 2016
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 78 CRCNGHADVCDILDPE-DPYHRICRCQHNTCGHNCEVCCPGY 118
C C+G V ++ DP D CRC+ N G C+ C PG+
Sbjct: 1533 CNCSG-PGVQELTDPTCDMDSGQCRCRPNVAGRRCDTCAPGF 1573
>sp|Q16787|LAMA3_HUMAN Laminin subunit alpha-3 OS=Homo sapiens GN=LAMA3 PE=1 SV=2
Length = 3333
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/132 (55%), Positives = 95/132 (71%), Gaps = 2/132 (1%)
Query: 4 EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
E ++ +SL++ RP KNF S L+E+T+ATN+RLR LRT LLGHL+S A +DPT TR
Sbjct: 225 ENGEVVVSLINGRPGAKNFTFSHTLREFTKATNIRLRFLRTNTLLGHLISKAQRDPTVTR 284
Query: 64 RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
RY+YSIKDISIGG+C CNGHA+VC+I +PE + C CQH+TCG C+ CC GY Q+ W
Sbjct: 285 RYYYSIKDISIGGQCVCNGHAEVCNINNPEKLFR--CECQHHTCGETCDRCCTGYNQRRW 342
Query: 124 RQSQSNKPFSCE 135
R + + CE
Sbjct: 343 RPAAWEQSHECE 354
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 78 CRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQS 126
C CNGH++ C +D CQHNT G +CE C GY A S
Sbjct: 1687 CNCNGHSNQC-----QDGSGICVNCQHNTAGEHCERCQEGYYGNAVHGS 1730
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 15/55 (27%)
Query: 78 CRCNGHADVCDILDPEDPYHR-------------IC-RCQHNTCGHNCEVCCPGY 118
C C+GHA C DP+ + +C CQHNT G NCE C GY
Sbjct: 356 CNCHGHASNC-YYDPDVERQQASLNTQGIYAGGGVCINCQHNTAGVNCEQCAKGY 409
>sp|Q61789|LAMA3_MOUSE Laminin subunit alpha-3 OS=Mus musculus GN=Lama3 PE=1 SV=3
Length = 3333
Score = 151 bits (382), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 91/132 (68%), Gaps = 2/132 (1%)
Query: 4 EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
E +I +SL++ RP K F S L+E+T+ATN+RLR LRT LLGHL+S A++DPT TR
Sbjct: 222 ENGEIVVSLINGRPGAKKFAFSDTLREFTKATNIRLRFLRTNTLLGHLISKAERDPTVTR 281
Query: 64 RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
RY+YSIKDIS+GGRC CNGHA+ C +PE + C CQH+TCG C CC GY Q+ W
Sbjct: 282 RYYYSIKDISVGGRCVCNGHAEACSADNPEKQFR--CECQHHTCGDTCNRCCAGYNQRRW 339
Query: 124 RQSQSNKPFSCE 135
+ + + CE
Sbjct: 340 QPAGQEQHNECE 351
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 65 YFYSIKDISIG--GRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKA 122
Y++ K + +G C CNGH++ C +D CQHNT G +CE C G+ A
Sbjct: 1672 YYWDNKSLPVGRCVPCNCNGHSNRC-----QDGSGICINCQHNTAGEHCERCQAGHYGNA 1726
Query: 123 WRQS 126
S
Sbjct: 1727 IHGS 1730
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 15/55 (27%)
Query: 78 CRCNGHADVCDILDPEDPYHR-------------IC-RCQHNTCGHNCEVCCPGY 118
C C+GHA C DP+ + + +C CQHNT G NCE C GY
Sbjct: 353 CNCHGHAVDC-YYDPDVEHQQASLNSKGVYAGGGVCINCQHNTAGVNCEKCAKGY 406
>sp|P24043|LAMA2_HUMAN Laminin subunit alpha-2 OS=Homo sapiens GN=LAMA2 PE=1 SV=4
Length = 3122
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 78/137 (56%), Gaps = 9/137 (6%)
Query: 4 EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDP---- 59
E +I ISL++ RPS + S L E+T A +RLR R + L LM A +DP
Sbjct: 210 ENGEIHISLINGRPSADD--PSPELLEFTSARYIRLRFQRIRTLNADLMMFAHKDPREID 267
Query: 60 -TTTRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGY 118
TRRY+YS+KDIS+GG C C GHA C LDP R C C+HNTCG +C+ CCPG+
Sbjct: 268 PIVTRRYYYSVKDISVGGMCICYGHARACP-LDPATNKSR-CECEHNTCGDSCDQCCPGF 325
Query: 119 EQKAWRQSQSNKPFSCE 135
QK WR CE
Sbjct: 326 HQKPWRAGTFLTKTECE 342
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
Query: 78 CRCNGHADVCDILDPEDPYHRICR-CQHNTCGHNCEVCCPGY 118
C+CNGH+ +CD P IC+ CQH+T G CE C GY
Sbjct: 1420 CQCNGHSSLCD------PETSICQNCQHHTAGDFCERCALGY 1455
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 78 CRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPG-YEQKAWRQSQSNKPFSC 134
C+C GHA+ CD D C+ +T G C+ C PG Y + S+ +P +C
Sbjct: 757 CQCFGHAESCD-----DVTGECLNCKDHTGGPYCDKCLPGFYGEPTKGTSEDCQPCAC 809
>sp|P19137|LAMA1_MOUSE Laminin subunit alpha-1 OS=Mus musculus GN=Lama1 PE=1 SV=1
Length = 3084
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 81/137 (59%), Gaps = 9/137 (6%)
Query: 4 EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMA-----DQD 58
E +I SL++ RPS + S +L E+T A +RLRL R + L LM+++ D D
Sbjct: 200 EHGEIHTSLINGRPSADD--PSPQLLEFTSARYIRLRLQRIRTLNADLMTLSHRDLRDLD 257
Query: 59 PTTTRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGY 118
P TRRY+YSIKDIS+GG C C GHA C E+ C+C+HNTCG +C+ CCPGY
Sbjct: 258 PIVTRRYYYSIKDISVGGMCICYGHASSCPW--DEEAKQLQCQCEHNTCGESCDRCCPGY 315
Query: 119 EQKAWRQSQSNKPFSCE 135
Q+ WR + CE
Sbjct: 316 HQQPWRPGTISSGNECE 332
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 12/74 (16%)
Query: 66 FYSIKDISIGGRCR---CNGHADVCDILDPEDPYHRICR-CQHNTCGHNCEVCCPGYEQK 121
+Y + I GG C+ C+GHA CDI H IC C HNT G +CE C PG+
Sbjct: 734 YYRVDGILFGGICQPCECHGHASECDI-------HGICSVCTHNTTGDHCEQCLPGFYGT 786
Query: 122 AWRQSQSN-KPFSC 134
R + + +P +C
Sbjct: 787 PSRGTPGDCQPCAC 800
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 78 CRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSC 134
C CN H+DVCD PE + C+ +T G +CE+C GY K P +C
Sbjct: 1410 CNCNNHSDVCD---PET--GKCLSCRDHTSGDHCELCASGYYGKVTGLPGDCTPCTC 1461
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 99 ICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKP 131
+C C T GH+C+ C PGY ++ +S P
Sbjct: 1368 LCVCPPGTAGHSCQDCAPGYYREKLPESGGRGP 1400
>sp|Q60675|LAMA2_MOUSE Laminin subunit alpha-2 OS=Mus musculus GN=Lama2 PE=1 SV=1
Length = 3106
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 78/137 (56%), Gaps = 9/137 (6%)
Query: 4 EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDP---- 59
E +I ISL++ RPS + S L E+T A +RLR R + L LM A +DP
Sbjct: 206 ENGEIHISLINGRPSADD--PSPELLEFTSARYIRLRFQRIRTLNADLMMFAHKDPREID 263
Query: 60 -TTTRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGY 118
TRRY+YS+KDIS+GG C C GHA C LDP R C C+HNTCG +C+ CCPG+
Sbjct: 264 PIVTRRYYYSVKDISVGGMCICYGHARACP-LDPATNKSR-CECEHNTCGESCDRCCPGF 321
Query: 119 EQKAWRQSQSNKPFSCE 135
QK WR CE
Sbjct: 322 HQKPWRAGTFLTKSECE 338
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 7/42 (16%)
Query: 78 CRCNGHADVCDILDPEDPYHRICR-CQHNTCGHNCEVCCPGY 118
C+CNGH+ CD P +C+ CQH+T G CE C GY
Sbjct: 1416 CQCNGHSSQCD------PETSVCQNCQHHTAGDFCERCALGY 1451
>sp|P25391|LAMA1_HUMAN Laminin subunit alpha-1 OS=Homo sapiens GN=LAMA1 PE=1 SV=2
Length = 3075
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/139 (43%), Positives = 82/139 (58%), Gaps = 13/139 (9%)
Query: 4 EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMA-----DQD 58
E +I SL++ RPS + S +L E+T A +RLRL R + L LM+++ + D
Sbjct: 193 EHGEIHTSLINGRPSADDL--SPKLLEFTSARYIRLRLQRIRTLNADLMTLSHREPKELD 250
Query: 59 PTTTRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRI--CRCQHNTCGHNCEVCCP 116
P TRRY+YSIKDIS+GG C C GHA C P D + C+C+HNTCG +C CCP
Sbjct: 251 PIVTRRYYYSIKDISVGGMCICYGHASSC----PWDETTKKLQCQCEHNTCGESCNRCCP 306
Query: 117 GYEQKAWRQSQSNKPFSCE 135
GY Q+ WR + +CE
Sbjct: 307 GYHQQPWRPGTVSSGNTCE 325
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 12/74 (16%)
Query: 66 FYSIKDISIGGRCR---CNGHADVCDILDPEDPYHRIC-RCQHNTCGHNCEVCCPGYEQK 121
+Y + I GG C+ C+GHA C++ H +C C HNT G +CE C PG+ +
Sbjct: 727 YYRVDGILFGGICQPCECHGHAAECNV-------HGVCIACAHNTTGVHCEQCLPGFYGE 779
Query: 122 AWRQSQSN-KPFSC 134
R + + +P +C
Sbjct: 780 PSRGTPGDCQPCAC 793
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 78 CRCNGHADVCDILDPEDPYHRIC-RCQHNTCGHNCEVCCPGYEQKA 122
C CN H+D CD P C C NT G +C+VC GY K
Sbjct: 1403 CSCNNHSDTCD------PNTGKCLNCGDNTAGDHCDVCTSGYYGKV 1442
>sp|A0JP86|LAMC1_XENTR Laminin subunit gamma-1 OS=Xenopus tropicalis GN=lamc1 PE=2 SV=1
Length = 1592
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 73/128 (57%), Gaps = 9/128 (7%)
Query: 8 ITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFY 67
+ S L+ RPS NF NS LQEW AT++R+ L R + S DP + Y+Y
Sbjct: 203 VAFSTLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDEVFS----DPKVLKSYYY 258
Query: 68 SIKDISIGGRCRCNGHADVCDILDPEDPYHRI-CRCQHNTCGHNCEVCCPGYEQKAWRQS 126
+I D ++GGRC+CNGHA C + + +I C C+HNT G +CE C P Y + WR+S
Sbjct: 259 AISDFAVGGRCKCNGHASEC----VRNEFEKIVCNCKHNTFGSDCEKCLPFYNDRPWRRS 314
Query: 127 QSNKPFSC 134
++ P C
Sbjct: 315 TADSPNEC 322
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 78 CRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSN 129
C CNGH+D CD P +C CQHNT G +CE C GY + S S+
Sbjct: 707 CTCNGHSDTCD------PESGVCDCQHNTAGPHCERCSEGYYGDSTTGSASD 752
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 92 PEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFS 133
P P+ IC C G CE C PGY R++ S P+S
Sbjct: 665 PSAPWVEICSCPTGYIGQFCERCAPGYR----RENPSQGPYS 702
>sp|Q1LVF0|LAMC1_DANRE Laminin subunit gamma-1 OS=Danio rerio GN=lamc1 PE=2 SV=2
Length = 1593
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 73/128 (57%), Gaps = 9/128 (7%)
Query: 8 ITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFY 67
+ S L+ RPS NF NS LQ+W AT++R+ L R + + DP + Y+Y
Sbjct: 204 VAFSTLEGRPSAYNFDNSPVLQDWVTATDIRVTLNRLNTFGDEVFN----DPKVLKSYYY 259
Query: 68 SIKDISIGGRCRCNGHADVCDILDPEDPYHR-ICRCQHNTCGHNCEVCCPGYEQKAWRQS 126
+I D ++GGRC+CNGHA C ++ Y + +C C+HNT G +C VC P Y + WR++
Sbjct: 260 AISDFAVGGRCKCNGHASEC----VKNEYSKLVCNCKHNTEGADCNVCKPFYNDRPWRRA 315
Query: 127 QSNKPFSC 134
+ P C
Sbjct: 316 TAENPNEC 323
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 49 GHLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCG 108
G+L +Q RR ++ S RC CNGH+D CD P +C CQHNT G
Sbjct: 679 GYLGQHCEQCDQGFRRSRPELRRFSTCERCNCNGHSDTCD------PETGMCNCQHNTAG 732
Query: 109 HNCEVCCPGYEQKAWRQSQSN 129
+CE C G+ + S S+
Sbjct: 733 LSCERCKDGFYGDSTVGSSSD 753
>sp|P11047|LAMC1_HUMAN Laminin subunit gamma-1 OS=Homo sapiens GN=LAMC1 PE=1 SV=3
Length = 1609
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 72/128 (56%), Gaps = 9/128 (7%)
Query: 8 ITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFY 67
+ S L+ RPS NF NS LQEW AT++R+ L R + + DP + Y+Y
Sbjct: 220 VAFSTLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDEVFN----DPKVLKSYYY 275
Query: 68 SIKDISIGGRCRCNGHADVCDILDPEDPYHR-ICRCQHNTCGHNCEVCCPGYEQKAWRQS 126
+I D ++GGRC+CNGHA C ++ + + +C C+HNT G +CE C P + + WR++
Sbjct: 276 AISDFAVGGRCKCNGHASEC----MKNEFDKLVCNCKHNTYGVDCEKCLPFFNDRPWRRA 331
Query: 127 QSNKPFSC 134
+ C
Sbjct: 332 TAESASEC 339
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 78 CRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGY 118
C CNGH++ CD P +C C+ NT G +CE C GY
Sbjct: 724 CACNGHSETCD------PETGVCNCRDNTAGPHCEKCSDGY 758
>sp|Q18823|LAM2_CAEEL Laminin-like protein lam-2 OS=Caenorhabditis elegans GN=lam-2 PE=1
SV=3
Length = 1633
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 67/128 (52%), Gaps = 5/128 (3%)
Query: 8 ITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFY 67
I S L+ RPS F S LQ+W A+ +R+ L R + +DP R Y+Y
Sbjct: 221 IAFSTLEGRPSAHAFEESEVLQKWVTASAIRISLNRMNTFGDEVF----KDPQVLRSYYY 276
Query: 68 SIKDISIGGRCRCNGHADVCDILDPEDPYHR-ICRCQHNTCGHNCEVCCPGYEQKAWRQS 126
+I D ++GGRC+CNGHA C D +R +CRC+HNT G +C C P Y + WR
Sbjct: 277 AISDFAVGGRCKCNGHASECVGSSSVDGENRLVCRCEHNTQGADCNECLPFYNDRPWRSG 336
Query: 127 QSNKPFSC 134
S + C
Sbjct: 337 TSVEANEC 344
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 65 YFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWR 124
YF + KD + C C+G+ D I + + +C NT G NCE C PGY A
Sbjct: 822 YFGNPKDGTECVECACSGNTDPNSIGNCDKITGECKKCIFNTHGFNCENCKPGYWGDALI 881
Query: 125 QSQSN 129
+ + N
Sbjct: 882 EPKGN 886
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 77 RCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSN 129
+C C+ H++ C+ C C+HNT G CE C GY A + ++ +
Sbjct: 735 KCDCHNHSNSCEAESGS------CICEHNTAGDTCERCARGYYGDALQGTEED 781
>sp|P34710|UNC6_CAEEL Netrin unc-6 OS=Caenorhabditis elegans GN=unc-6 PE=1 SV=1
Length = 612
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 11/142 (7%)
Query: 1 MEKEENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMA----- 55
M N++ L++RPS +NF NS LQ+W AT++++ R L ++
Sbjct: 206 MGPGGNRVAFPFLENRPSAQNFENSPVLQDWVTATDIKVVFSRLSPDQAELYGLSNDVNS 265
Query: 56 ---DQDPTTTRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCE 112
+ D +RYFYS+ ++++GGRC+CNGHA C I D Y C C+HNT G CE
Sbjct: 266 YGNETDDEVKQRYFYSMGELAVGGRCKCNGHASRC-IFDKMGRY--TCDCKHNTAGTECE 322
Query: 113 VCCPGYEQKAWRQSQSNKPFSC 134
+C P + + W ++ +N SC
Sbjct: 323 MCKPFHYDRPWGRATANSANSC 344
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 78 CRCNGHADVCDILDPE------DPYHRIC-RCQHNTCGHNCEVCCPGY 118
C CN HA C D E + +C C+HNT G NC +C PG+
Sbjct: 347 CNCNQHAKRCR-FDAELFRLSGNRSGGVCLNCRHNTAGRNCHLCKPGF 393
>sp|Q9R0B6|LAMC3_MOUSE Laminin subunit gamma-3 OS=Mus musculus GN=Lamc3 PE=2 SV=2
Length = 1581
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 67/129 (51%), Gaps = 7/129 (5%)
Query: 6 NKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRY 65
+ S L+ RPS NF S LQEW +T++ + L R + +DP + Y
Sbjct: 212 GNVAFSTLEGRPSAYNFEESPVLQEWVTSTDILISLDRLNTFGDDIF----KDPRVLQSY 267
Query: 66 FYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQ 125
+Y++ D S+GGRC+CNGHA C +P CRCQHNT G +CE C P ++ + W +
Sbjct: 268 YYAVSDFSVGGRCKCNGHASEC---EPNAAGQLACRCQHNTTGVDCERCLPFFQDRPWAR 324
Query: 126 SQSNKPFSC 134
+ C
Sbjct: 325 GTAEDANEC 333
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 78 CRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
C CN H DP IC C H+T G +CE C PG+ A+
Sbjct: 719 CTCNQHGTC-------DPNTGICLCGHHTEGPSCERCMPGFYGNAF 757
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 77 RCRCNGHADVCDILDPEDPYHRIC-RCQHNTCGHNCEVCCPGYEQKAWRQSQSNK--PFS 133
RC+C+G+ D+ + + DP+ C RC +NT G +CE C G+ A +K P S
Sbjct: 821 RCQCSGNVDL-NAVGNCDPHSGHCLRCLYNTTGAHCEHCREGFYGSAVATRPVDKCAPCS 879
Query: 134 CE 135
C+
Sbjct: 880 CD 881
>sp|Q9Y6N6|LAMC3_HUMAN Laminin subunit gamma-3 OS=Homo sapiens GN=LAMC3 PE=1 SV=3
Length = 1575
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 66/129 (51%), Gaps = 7/129 (5%)
Query: 6 NKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRY 65
+ S L+ RPS NF S LQEW +T + + L R + +DP + Y
Sbjct: 203 GNVAFSTLEGRPSAYNFEESPGLQEWVTSTELLISLDRLNTFGDDIF----KDPKVLQSY 258
Query: 66 FYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQ 125
+Y++ D S+GGRC+CNGHA C P+ CRCQHNT G +CE C P ++ + W +
Sbjct: 259 YYAVSDFSVGGRCKCNGHASEC---GPDVAGQLACRCQHNTTGTDCERCLPFFQDRPWAR 315
Query: 126 SQSNKPFSC 134
+ C
Sbjct: 316 GTAEAAHEC 324
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 78 CRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGY 118
C CN H DP IC C H+T G +CE C PG+
Sbjct: 707 CTCNQHGTC-------DPNTGICVCSHHTEGPSCERCLPGF 740
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 77 RCRCNGHADVCDILDPEDPYHRIC-RCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSC 134
+C+C+G+ D + + DP C RC HNT G +CE C G+ A ++K C
Sbjct: 809 QCQCSGNVDP-NAVGNCDPLSGHCLRCLHNTTGDHCEHCQEGFYGSALAPRPADKCMPC 866
>sp|P02468|LAMC1_MOUSE Laminin subunit gamma-1 OS=Mus musculus GN=Lamc1 PE=1 SV=2
Length = 1607
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 70/121 (57%), Gaps = 7/121 (5%)
Query: 8 ITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFY 67
+ S L+ RPS NF NS LQEW AT++R+ L R + + +P + Y+Y
Sbjct: 218 VAFSTLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDEVFN----EPKVLKSYYY 273
Query: 68 SIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQ 127
+I D ++GGRC+CNGHA C + + D +C C+HNT G +CE C P + + WR++
Sbjct: 274 AISDFAVGGRCKCNGHASEC-VKNEFDKL--MCNCKHNTYGVDCEKCLPFFNDRPWRRAT 330
Query: 128 S 128
+
Sbjct: 331 A 331
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 63 RRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGY 118
RR S+ S C CNGH++ CD P +C C+ NT G +CE C GY
Sbjct: 707 RRETPSLGPYSPCVLCTCNGHSETCD------PETGVCDCRDNTAGPHCEKCSDGY 756
>sp|P15215|LAMC1_DROME Laminin subunit gamma-1 OS=Drosophila melanogaster GN=LanB2 PE=2
SV=2
Length = 1639
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 70/135 (51%), Gaps = 11/135 (8%)
Query: 5 ENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRR 64
+ +I S L+ RPS NF S LQEW AT++R+ L R L D +
Sbjct: 230 DGEIAFSTLEGRPSGINFERSGELQEWVTATDIRITLDRLNTFGDELFG----DSQVLKS 285
Query: 65 YFYSIKDISIGGRCRCNGHADVCDILDPEDPYHR----ICRCQHNTCGHNCEVCCPGYEQ 120
YFY+I DI++G RC+CNGHA C P H +C C+HNT G +C+ C P Y
Sbjct: 286 YFYAISDIAVGARCKCNGHASKC---VPSTGMHGERTLVCECRHNTDGPDCDRCLPLYND 342
Query: 121 KAWRQSQSNKPFSCE 135
W++S S + C+
Sbjct: 343 LKWKRSTSTEVNECK 357
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 78 CRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGY 118
C C+GHAD+CD C CQHNT G NC+ C G+
Sbjct: 744 CDCHGHADICDSETGR------CICQHNTHGDNCDQCAKGF 778
>sp|Q2HXW4|NET1_PIG Netrin-1 OS=Sus scrofa GN=NTN1 PE=2 SV=1
Length = 600
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 10/129 (7%)
Query: 8 ITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRR--Y 65
I S LD RPS +F NS LQ+W AT++R+ R H ++D + R Y
Sbjct: 218 IAFSTLDGRPSAHDFDNSPVLQDWVTATDIRVAFSRL-----HTFGDENEDDSELARDSY 272
Query: 66 FYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQ 125
FY++ D+ +GGRC+CNGHA C + D +D +C C+HNT G C+ C P + + W++
Sbjct: 273 FYAVSDLQVGGRCKCNGHAARC-VRDRDDSL--VCDCRHNTAGPECDRCKPFHYDRPWQR 329
Query: 126 SQSNKPFSC 134
+ + + C
Sbjct: 330 ATAREANEC 338
>sp|O95631|NET1_HUMAN Netrin-1 OS=Homo sapiens GN=NTN1 PE=1 SV=2
Length = 604
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 10/129 (7%)
Query: 8 ITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRR--Y 65
I S LD RPS +F NS LQ+W AT++R+ R H ++D + R Y
Sbjct: 218 IAFSTLDGRPSAHDFDNSPVLQDWVTATDIRVAFSRL-----HTFGDENEDDSELARDSY 272
Query: 66 FYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQ 125
FY++ D+ +GGRC+CNGHA C + D +D +C C+HNT G C+ C P + + W++
Sbjct: 273 FYAVSDLQVGGRCKCNGHAARC-VRDRDDSL--VCDCRHNTAGPECDRCKPFHYDRPWQR 329
Query: 126 SQSNKPFSC 134
+ + + C
Sbjct: 330 ATAREANEC 338
>sp|Q924Z9|NET1_RAT Netrin-1 OS=Rattus norvegicus GN=Ntn1 PE=1 SV=1
Length = 604
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 72/129 (55%), Gaps = 10/129 (7%)
Query: 8 ITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRR--Y 65
I S LD RPS +F NS LQ+W AT++R+ R H ++D + R Y
Sbjct: 218 IAFSTLDGRPSAHDFDNSPVLQDWVTATDIRVAFSRL-----HTFGDENEDDSELARDSY 272
Query: 66 FYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQ 125
+Y++ D+ +GGRC+CNGHA C + D +D +C C+HNT G C+ C P + + W++
Sbjct: 273 YYAVSDLQVGGRCKCNGHAARC-VRDRDDSL--VCDCRHNTAGPECDRCKPFHYDRPWQR 329
Query: 126 SQSNKPFSC 134
+ + + C
Sbjct: 330 ATAREANEC 338
>sp|O09118|NET1_MOUSE Netrin-1 OS=Mus musculus GN=Ntn1 PE=1 SV=3
Length = 604
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 72/129 (55%), Gaps = 10/129 (7%)
Query: 8 ITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRR--Y 65
I S LD RPS +F NS LQ+W AT++R+ R H ++D + R Y
Sbjct: 218 IAFSTLDGRPSAHDFDNSPVLQDWVTATDIRVAFSRL-----HTFGDENEDDSELARDSY 272
Query: 66 FYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQ 125
+Y++ D+ +GGRC+CNGHA C + D +D +C C+HNT G C+ C P + + W++
Sbjct: 273 YYAVSDLQVGGRCKCNGHAARC-VRDRDDSL--VCDCRHNTAGPECDRCKPFHYDRPWQR 329
Query: 126 SQSNKPFSC 134
+ + + C
Sbjct: 330 ATAREANEC 338
>sp|Q90922|NET1_CHICK Netrin-1 OS=Gallus gallus GN=NTN1 PE=1 SV=1
Length = 606
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 10/129 (7%)
Query: 8 ITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRR--Y 65
I S LD RP+ +F NS LQ+W AT++++ R H ++D + R Y
Sbjct: 220 IAFSTLDGRPTAHDFDNSPVLQDWVTATDIKVTFSRL-----HTFGDENEDDSELARDSY 274
Query: 66 FYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQ 125
FY++ D+ +GGRC+CNGHA C + D +D + +C C+HNT G C+ C P + + W++
Sbjct: 275 FYAVSDLQVGGRCKCNGHASRC-VRDRDD--NLVCDCKHNTAGPECDRCKPFHYDRPWQR 331
Query: 126 SQSNKPFSC 134
+ + + C
Sbjct: 332 ATAREANEC 340
>sp|Q90923|NET3_CHICK Netrin-3 (Fragment) OS=Gallus gallus GN=NTN3 PE=2 SV=1
Length = 581
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 5/129 (3%)
Query: 8 ITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNL--LGHLMSMADQDPTTTRRY 65
I S LD RPS ++F +S LQ+W AT++R+ R LG + + Y
Sbjct: 190 IAFSTLDGRPSAQDFDSSPVLQDWVTATDIRVVFSRPHLFRELGGREAGEEDGGAGATPY 249
Query: 66 FYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQ 125
+YS+ ++ +GGRC+CNGHA C + D E +C C+HNT G C+ C P + + W++
Sbjct: 250 YYSVGELQVGGRCKCNGHASRC-VKDKEQKL--VCDCKHNTEGPECDRCKPFHYDRPWQR 306
Query: 126 SQSNKPFSC 134
+ + + C
Sbjct: 307 ASAREANEC 315
>sp|O75445|USH2A_HUMAN Usherin OS=Homo sapiens GN=USH2A PE=1 SV=3
Length = 5202
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 14/132 (10%)
Query: 8 ITISLL----DHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
+T S+L ++RP NF+N+ LQE+ +AT +R H + R
Sbjct: 452 VTFSILTPGPNYRPGYNNFYNTPSLQEFVKATQIRFHF--------HGQYYTTETAVNLR 503
Query: 64 RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
+Y++ +I+I GRC+C+GHAD CD PY +C + T G +C+ C P Y K +
Sbjct: 504 HRYYAVDEITISGRCQCHGHADNCDTTS--QPYRCLCSQESFTEGLHCDRCLPLYNDKPF 561
Query: 124 RQSQSNKPFSCE 135
RQ F+C+
Sbjct: 562 RQGDQVYAFNCK 573
>sp|Q2QI47|USH2A_MOUSE Usherin OS=Mus musculus GN=Ush2A PE=1 SV=2
Length = 5193
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 14/134 (10%)
Query: 6 NKITISLL----DHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTT 61
+T LL HRP +F+NS+ LQE+ RAT +RL GH +
Sbjct: 447 GNVTFDLLTSGQKHRPGYNDFYNSSVLQEFMRATQIRLHFHGQYYPAGHTVDW------- 499
Query: 62 TRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQK 121
R +Y++ +I + GRC+C+GHA+ CD PY +C T G C+ C P Y K
Sbjct: 500 -RHQYYAVDEIIVSGRCQCHGHAETCD--RTRRPYRCLCSPHSFTEGPQCDRCSPLYNDK 556
Query: 122 AWRQSQSNKPFSCE 135
+R + F+C+
Sbjct: 557 PFRSGDNVNAFNCK 570
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 9/46 (19%)
Query: 78 CRCNGHADVCDILDPEDPY--------HRICR-CQHNTCGHNCEVC 114
C+C+GHA C DP+ +C CQH+T G +CE C
Sbjct: 572 CQCHGHASSCHYDASVDPFPLEHNRGGGGVCDDCQHHTTGRHCESC 617
>sp|Q9R1A3|NET3_MOUSE Netrin-3 OS=Mus musculus GN=Ntn3 PE=2 SV=1
Length = 580
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 65/127 (51%), Gaps = 9/127 (7%)
Query: 8 ITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFY 67
+ S+ D P + NS LQ+W AT++R+ L R + +D T Y Y
Sbjct: 191 LAFSVQDGSPQGLDLDNSPVLQDWVTATDIRIVLTRPA------IQGDTRDGGVTVPYSY 244
Query: 68 SIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQ 127
S ++ +GGRC+CNGHA C +LD H +C CQH T G +C C P Y + W+++
Sbjct: 245 SATELQVGGRCKCNGHASRC-LLDTHG--HLVCDCQHGTEGPDCSRCKPFYCDRPWQRAT 301
Query: 128 SNKPFSC 134
+ +C
Sbjct: 302 GQEAHAC 308
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 78 CRCNGHADVCDI------LDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWR 124
C CNGHA C L C+HNT G +C C G+ + R
Sbjct: 311 CSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGR 363
>sp|O00634|NET3_HUMAN Netrin-3 OS=Homo sapiens GN=NTN3 PE=2 SV=1
Length = 580
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 9/127 (7%)
Query: 8 ITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFY 67
+ S+ D P + +S LQ+W AT+VR+ L R + +D Y Y
Sbjct: 191 LAFSMQDSSPPGLDLDSSPVLQDWVTATDVRVVLTRPST------AGDPRDMEAVVPYSY 244
Query: 68 SIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQ 127
+ D+ +GGRC+CNGHA C +LD + H IC C+H T G +C C P Y + W+++
Sbjct: 245 AATDLQVGGRCKCNGHASRC-LLDTQG--HLICDCRHGTEGPDCGRCKPFYCDRPWQRAT 301
Query: 128 SNKPFSC 134
+ + +C
Sbjct: 302 ARESHAC 308
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 78 CRCNGHADVCDI------LDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWR 124
C CNGHA C L C+HNT G +C C G+ + R
Sbjct: 311 CSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGR 363
>sp|Q8K3K1|USH2A_RAT Usherin OS=Rattus norvegicus GN=Ush2a PE=1 SV=1
Length = 1512
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
Query: 6 NKITISLL----DHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTT 61
+T LL HRP +F+NS+ LQE+ AT +RL + L D
Sbjct: 446 GNVTFDLLTSGQKHRPGDYDFYNSSLLQEFMTATQIRLYF---RGLFYPAWHTVD----- 497
Query: 62 TRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQK 121
+R +Y++ +I+I GRC+C+GHA+ CD PY +C T G C C P Y K
Sbjct: 498 SRHRYYAVDEITIIGRCQCHGHAETCD--RTRRPYRCLCSPHSFTEGPQCGRCSPLYNDK 555
Query: 122 AWRQSQSNKPFSCE 135
+R F+C+
Sbjct: 556 PFRSGNKVHAFNCK 569
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 9/46 (19%)
Query: 78 CRCNGHADVCDILDPEDP----YHR----ICR-CQHNTCGHNCEVC 114
C+C+GHA C DP Y+R +C CQH+T G NCE C
Sbjct: 571 CQCHGHASSCHYDASMDPFPLEYNRGGGGVCDDCQHHTTGRNCESC 616
>sp|Q24567|NETA_DROME Netrin-A OS=Drosophila melanogaster GN=NetA PE=2 SV=2
Length = 726
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 36/162 (22%)
Query: 6 NKITISLLDHRPSMKNFFNSTRLQEWTRATNVRL---RLLRT--KNLL----GHLMSMAD 56
++I S L+ RPS ++ +S LQ+W AT++R+ RL R + LL G +A
Sbjct: 210 SRIAFSTLEGRPSSRDLDSSPVLQDWVTATDIRVVFHRLQRPDPQALLSLEAGGATDLAS 269
Query: 57 QD----------------------PTTTRRYFYSIKDISIGGRCRCNGHADVCDILDPED 94
T+ Y+I D S+GGRC+CNGHA C D
Sbjct: 270 GKYSVPLANGPAGNNIEANLGGDVATSGSGLHYAISDFSVGGRCKCNGHASKCST----D 325
Query: 95 PYHRI-CRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCE 135
++ C C HNT G +CE C P + + W ++ + + C+
Sbjct: 326 ASGQLNCECSHNTAGRDCERCKPFHFDRPWARATAKEANECK 367
>sp|P02469|LAMB1_MOUSE Laminin subunit beta-1 OS=Mus musculus GN=Lamb1 PE=1 SV=3
Length = 1786
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 9/136 (6%)
Query: 5 ENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRR 64
E ++ LD +++ + S R+Q + TN+R++ ++ L +L+ D +
Sbjct: 202 EGEVIFRALDPAFKIEDPY-SPRIQNLLKITNLRIKFVKLHTLGDNLL---DSRMEIREK 257
Query: 65 YFYSIKDISIGGRCRCNGHADVCDILDP-----EDPYHRICRCQHNTCGHNCEVCCPGYE 119
Y+Y++ D+ + G C C GHA C +D E H C C+HNT G NCE+C Y
Sbjct: 258 YYYAVYDMVVRGNCFCYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYH 317
Query: 120 QKAWRQSQSNKPFSCE 135
WR ++ +C+
Sbjct: 318 DLPWRPAEGRNSNACK 333
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 78 CRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGY 118
C+CNGHA CD + E CQ T GHNCE C GY
Sbjct: 867 CQCNGHALDCDTVTGE-----CLSCQDYTTGHNCERCLAGY 902
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 77 RCRCNGHADVCDI-----LDPEDPYHRIC-RCQHNTCGHNCEVCCPGYEQKAWR 124
+C CN H+ C L + +C CQHNT G NCE C P Y Q R
Sbjct: 334 KCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPER 387
>sp|P07942|LAMB1_HUMAN Laminin subunit beta-1 OS=Homo sapiens GN=LAMB1 PE=1 SV=2
Length = 1786
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 9/136 (6%)
Query: 5 ENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRR 64
E ++ LD +++ + S R+Q + TN+R++ ++ L +L+ D +
Sbjct: 202 EGEVIFRALDPAFKIEDPY-SPRIQNLLKITNLRIKFVKLHTLGDNLL---DSRMEIREK 257
Query: 65 YFYSIKDISIGGRCRCNGHADVCDILDP-----EDPYHRICRCQHNTCGHNCEVCCPGYE 119
Y+Y++ D+ + G C C GHA C +D E H C C+HNT G NCE+C Y
Sbjct: 258 YYYAVYDMVVRGNCFCYGHASECAPVDGFNEEVEGMVHGHCMCRHNTKGLNCELCMDFYH 317
Query: 120 QKAWRQSQSNKPFSCE 135
WR ++ +C+
Sbjct: 318 DLPWRPAEGRNSNACK 333
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 78 CRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGY 118
C+CNGHAD CD + E CQ T GHNCE C GY
Sbjct: 867 CQCNGHADDCDPVTGE-----CLNCQDYTMGHNCERCLAGY 902
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 77 RCRCNGHA-----DVCDILDPEDPYHRICR-CQHNTCGHNCEVCCPGYEQKAWR 124
+C CN H+ D+ L + +C CQHNT G NCE C P Y Q R
Sbjct: 334 KCNCNEHSISCHFDMAVYLATGNVSGGVCDDCQHNTMGRNCEQCKPFYYQHPER 387
>sp|A4D0S4|LAMB4_HUMAN Laminin subunit beta-4 OS=Homo sapiens GN=LAMB4 PE=2 SV=1
Length = 1761
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Query: 6 NKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRY 65
++ + +LD ++N + S +Q+ TN+R+ + L L+ D + +Y
Sbjct: 196 GEVVLKVLDPSFEIENPY-SPYIQDLVTLTNLRINFTKLHTLGDALLGRRQND--SLDKY 252
Query: 66 FYSIKDISIGGRCRCNGHADVC--------DILDPEDPYHRICRCQHNTCGHNCEVCCPG 117
+Y++ ++ + G C CNGHA C D+ P H C CQHNT G NCE C
Sbjct: 253 YYALYEMIVRGSCFCNGHASECRPMQKMRGDVFSPPGMVHGQCVCQHNTDGPNCERCKDF 312
Query: 118 YEQKAWRQSQSNKPFSC 134
++ WR + + +C
Sbjct: 313 FQDAPWRPAADLQDNAC 329
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 78 CRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQS 126
C CN + DV D RC HNT G NC++C PG+ A Q+
Sbjct: 970 CACNNNIDVTDPESCSRVTGECLRCLHNTQGANCQLCKPGHYGSALNQT 1018
>sp|Q01635|LAMB1_CHICK Laminin subunit beta-1 (Fragment) OS=Gallus gallus GN=LAMB1 PE=2
SV=1
Length = 303
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 9/136 (6%)
Query: 5 ENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRR 64
E ++ +LD +++ + S R+Q + TN+R++ + L +L+ D +
Sbjct: 134 EGEVIYRVLDPAFRIEDPY-SPRIQNLLKITNLRVKFTKLHTLGDNLL---DSRMEIREK 189
Query: 65 YFYSIKDISIGGRCRCNGHADVCDILDP-----EDPYHRICRCQHNTCGHNCEVCCPGYE 119
Y+Y+I D+ + G C C GHA C ++ E H C C+HNT G NCE C Y
Sbjct: 190 YYYAIYDMVVRGNCFCYGHASECAPVEGFSEEVEGMVHGHCMCRHNTKGLNCEQCLDFYH 249
Query: 120 QKAWRQSQSNKPFSCE 135
WR ++ +C+
Sbjct: 250 DLPWRPAEGRNSNACK 265
>sp|Q9Y2I2|NTNG1_HUMAN Netrin-G1 OS=Homo sapiens GN=NTNG1 PE=1 SV=3
Length = 539
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 25 STRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHA 84
+ +L+++ T++R+RLLR +G + D RYFY+I DI + GRC+CN HA
Sbjct: 250 TKKLRDFFTVTDLRIRLLRPA--VGEIFV----DELHLARYFYAISDIKVRGRCKCNLHA 303
Query: 85 DVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
VC D C C+HNT G +C C Y+ + W
Sbjct: 304 TVCVY----DNSKLTCECEHNTTGPDCGKCKKNYQGRPW 338
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 45 KNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRIC-RCQ 103
KN G S P I IS G C C GH++ C +D + IC C+
Sbjct: 331 KNYQGRPWSPGSYLPIPKGTANTCIPSISSIGNCECFGHSNRCSYIDLLNTV--ICVSCK 388
Query: 104 HNTCGHNCEVCCPGYEQKAWRQ 125
HNT G +CE+C GY + A Q
Sbjct: 389 HNTRGQHCELCRLGYFRNASAQ 410
>sp|Q13751|LAMB3_HUMAN Laminin subunit beta-3 OS=Homo sapiens GN=LAMB3 PE=1 SV=1
Length = 1172
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 26/142 (18%)
Query: 6 NKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRY 65
K+ ++L+D + S ++QE TN+R+ R P R Y
Sbjct: 187 GKVQLNLMDLVSGIPAT-QSQKIQEVGEITNLRVNFTRLA-------------PVPQRGY 232
Query: 66 -----FYSIKDISIGGRCRCNGHADVCD-----ILDPEDPY--HRICRCQHNTCGHNCEV 113
+Y++ + + G C C+GHAD C P H +C CQHNT G NCE
Sbjct: 233 HPPSAYYAVSQLRLQGSCFCHGHADRCAPKPGASAGPSTAVQVHDVCVCQHNTAGPNCER 292
Query: 114 CCPGYEQKAWRQSQSNKPFSCE 135
C P Y + WR ++ C+
Sbjct: 293 CAPFYNNRPWRPAEGQDAHECQ 314
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
Query: 77 RCRCNGHADVCDILDP------EDPYHRIC-RCQHNTCGHNCEVC 114
RC CNGH++ C DP + Y +C C+ +T G NCE C
Sbjct: 315 RCDCNGHSETCH-FDPAVFAASQGAYGGVCDNCRDHTEGKNCERC 358
>sp|Q8R4G0|NTNG1_MOUSE Netrin-G1 OS=Mus musculus GN=Ntng1 PE=1 SV=2
Length = 539
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 25 STRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHA 84
+ +L+++ T++R+RLLR +G + D RYFY+I DI + GRC+CN HA
Sbjct: 250 TKKLRDFFTVTDLRIRLLRPA--VGEIFV----DELHLARYFYAISDIKVRGRCKCNLHA 303
Query: 85 DVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
C D C C+HNT G +C C Y+ + W
Sbjct: 304 TSCLY----DNSKLTCECEHNTTGPDCGKCKKNYQGRPW 338
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 45 KNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRIC-RCQ 103
KN G S P I IS G C C GH++ C +D + IC C+
Sbjct: 331 KNYQGRPWSPGSYLPIPKGTANTCIPSISSIGNCECFGHSNRCSYIDLLNTV--ICVSCK 388
Query: 104 HNTCGHNCEVCCPGYEQKAWRQ 125
HNT G +CE+C GY + A Q
Sbjct: 389 HNTRGQHCELCRLGYFRNASAQ 410
>sp|P55268|LAMB2_HUMAN Laminin subunit beta-2 OS=Homo sapiens GN=LAMB2 PE=1 SV=2
Length = 1798
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 9/135 (6%)
Query: 5 ENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRR 64
E ++ +LD + + + S+R+Q + TN+R+ L R L +L+ D +
Sbjct: 214 EGEVIYRVLDPAIPIPDPY-SSRIQNLLKITNLRVNLTRLHTLGDNLL---DPRREIREK 269
Query: 65 YFYSIKDISIGGRCRCNGHADVCDILDP-----EDPYHRICRCQHNTCGHNCEVCCPGYE 119
Y+Y++ ++ + G C C GHA C E H C C+HNT G NCE C Y
Sbjct: 270 YYYALYELVVRGNCFCYGHASECAPAPGAPAHAEGMVHGACICKHNTRGLNCEQCQDFYR 329
Query: 120 QKAWRQSQSNKPFSC 134
WR ++ +C
Sbjct: 330 DLPWRPAEDGHSHAC 344
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 75 GGRCR---CNGHADVCDILDPEDPYHRIC-RCQHNTCGHNCEVCCPGYEQKAWRQS 126
GGRC+ C+G+ D D D DP+ C RC H+T G +C C PG+ +A RQS
Sbjct: 980 GGRCQLCECSGNIDPMDP-DACDPHTGQCLRCLHHTEGPHCAHCKPGFHGQAARQS 1034
>sp|Q8R4F1|NTNG2_MOUSE Netrin-G2 OS=Mus musculus GN=Ntng2 PE=1 SV=2
Length = 589
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 10/97 (10%)
Query: 28 LQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHADVC 87
L+E+ T++R+RLLR LG + +YFY+I +I + GRC+CN HA++C
Sbjct: 243 LKEFFTFTDLRMRLLRPA--LGGTYVQREN----LYKYFYAISNIEVIGRCKCNLHANLC 296
Query: 88 DILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWR 124
+ + C C+HNT G +C C + +AWR
Sbjct: 297 TVREGS----LQCECEHNTTGPDCGRCKKNFRTRAWR 329
>sp|Q9JI33|NET4_MOUSE Netrin-4 OS=Mus musculus GN=Ntn4 PE=2 SV=2
Length = 628
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 25 STRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHA 84
S ++QE + TN+R+RLL+ ++ + D + Y++ D + G C CNGHA
Sbjct: 212 SAKVQEQLKITNLRVRLLKRQSCP---CQINDLNAKPHHFMHYAVYDFIVKGSCFCNGHA 268
Query: 85 DVCDILDPEDP---------YHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQS 128
D C ++ P H C C+HNT G +C+ C P Y + W +
Sbjct: 269 DQCLPVEGFRPIKAPGAFHVVHGRCMCKHNTAGSHCQHCAPLYNDRPWEAADG 321
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
Query: 78 CRCNGHADVC--DILDPEDPYHR---ICR-CQHNTCGHNCEVCCPGY 118
C+CNGHAD C D+ E +R +C CQHNT G +C+ C PG+
Sbjct: 332 CKCNGHADTCHFDVNVWEASGNRSGGVCNNCQHNTEGQHCQRCKPGF 378
>sp|Q61292|LAMB2_MOUSE Laminin subunit beta-2 OS=Mus musculus GN=Lamb2 PE=2 SV=2
Length = 1799
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 9/135 (6%)
Query: 5 ENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRR 64
E ++ +LD + + + S+R+Q + TN+R+ L R L +L+ D +
Sbjct: 217 EGEVIYRVLDPAIPIPDPY-SSRIQNLLKITNLRVNLTRLHTLGDNLL---DPRREIREK 272
Query: 65 YFYSIKDISIGGRCRCNGHADVCDILDP-----EDPYHRICRCQHNTCGHNCEVCCPGYE 119
Y+Y++ ++ I G C C GHA C E H C C+HNT G NCE C Y+
Sbjct: 273 YYYALYELVIRGNCFCYGHASQCAPAPGAPAHAEGMVHGACICKHNTRGLNCEQCQDFYQ 332
Query: 120 QKAWRQSQSNKPFSC 134
W ++ +C
Sbjct: 333 DLPWHPAEDGHTHAC 347
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 75 GGRCR---CNGHADVCDILDPEDPYHRIC-RCQHNTCGHNCEVCCPGYEQKAWRQS 126
GGRC+ C+G+ D D D DP+ C RC HNT G +C C PG+ +A RQS
Sbjct: 981 GGRCQLCECSGNIDPMDP-DACDPHTGQCLRCLHNTEGPHCGYCKPGFHGQAARQS 1035
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 77 RCRCNGHADVCDI-----LDPEDPYHRIC-RCQHNTCGHNCEVCCPGY 118
+C CNGH C L + +C CQHNT G +CE C P +
Sbjct: 349 KCECNGHTHSCHFDMAVYLASGNVSGGVCDGCQHNTAGRHCEFCRPFF 396
>sp|P15800|LAMB2_RAT Laminin subunit beta-2 OS=Rattus norvegicus GN=Lamb2 PE=2 SV=1
Length = 1801
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 9/135 (6%)
Query: 5 ENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRR 64
E ++ +LD + + + S+R+Q + TN+R+ L R L +L+ D +
Sbjct: 217 EGEVIYRVLDPAIPIPDPY-SSRIQNLLKITNLRVNLTRLHTLGDNLL---DPRREIREK 272
Query: 65 YFYSIKDISIGGRCRCNGHADVCDILDP-----EDPYHRICRCQHNTCGHNCEVCCPGYE 119
Y+Y++ ++ I G C C GHA C E H C C+HNT G NCE C Y+
Sbjct: 273 YYYALYELVIRGNCFCYGHASQCAPAPGAPAHAEGMVHGACICKHNTRGLNCEQCQDFYQ 332
Query: 120 QKAWRQSQSNKPFSC 134
W ++ +C
Sbjct: 333 DLPWHPAEDGHTHAC 347
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 75 GGRCR---CNGHADVCDILDPEDPYHRIC-RCQHNTCGHNCEVCCPGYEQKAWRQS 126
GGRC+ C+G+ D D DP+ C RC H+T G +C C PG+ +A RQS
Sbjct: 983 GGRCQLCECSGNIDPTDP-GACDPHTGQCLRCLHHTEGPHCGHCKPGFHGQAARQS 1037
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 77 RCRCNGHADVCDI-----LDPEDPYHRIC-RCQHNTCGHNCEVCCPGY---EQKAWRQSQ 127
+C CNGH+ C L + +C CQHNT G +CE+C P + K R
Sbjct: 349 KCECNGHSHSCHFDMAVYLASGNVSGGVCDGCQHNTAGRHCELCRPFFYRDPTKDMRDPA 408
Query: 128 SNKPFSCE 135
+ +P C+
Sbjct: 409 ACRPCDCD 416
>sp|Q5RB89|NET4_PONAB Netrin-4 OS=Pongo abelii GN=NTN4 PE=2 SV=1
Length = 628
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 25 STRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHA 84
S ++QE + TN+R++LL+ ++ + D+ T Y+I D + G C CNGHA
Sbjct: 212 SAKVQEQLKITNLRVQLLKRQSCPCQRNDLNDEPQHFTH---YAIYDFIVKGSCFCNGHA 268
Query: 85 DVCDILDPEDPY---------HRICRCQHNTCGHNCEVCCPGYEQKAWRQSQS 128
D C + P H C C+HNT G +C+ C P Y + W +
Sbjct: 269 DQCIPVHGFRPVKAPGTFHMVHGKCMCKHNTAGSHCQHCAPLYNDQPWEAADG 321
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 9/66 (13%)
Query: 78 CRCNGHADVC--DILDPEDPYHR---ICR-CQHNTCGHNCEVCCPGYE---QKAWRQSQS 128
C+CNGHAD C D+ E +R +C CQHNT G +C+ C PG+ ++ + +
Sbjct: 332 CKCNGHADTCHFDVNVWEASGNRSGGVCDDCQHNTEGQHCQRCKPGFYRDLRRPFSAPDA 391
Query: 129 NKPFSC 134
KP SC
Sbjct: 392 CKPCSC 397
>sp|Q8JHV6|LAMB4_DANRE Laminin subunit beta-4 OS=Danio rerio GN=lamb4 PE=2 SV=1
Length = 1827
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 11/128 (8%)
Query: 5 ENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRR 64
E ++ + LD + + ++ST +Q TN+R+ R L L++ ++P +
Sbjct: 197 EGEVVLKALDPSFDIHDPYDST-IQGLITLTNLRVNFTRLLTLGDTLLTRRKRNPQD--K 253
Query: 65 YFYSIKDISIGGRCRCNGHADVC--------DILDPEDPYHRICRCQHNTCGHNCEVCCP 116
Y+Y++ ++ + G C CNGHA C D H C CQHNT G+NCE C
Sbjct: 254 YYYALYEMVVRGSCFCNGHASQCIPVDGARGDTFTEPGMVHGRCVCQHNTAGYNCERCQD 313
Query: 117 GYEQKAWR 124
Y WR
Sbjct: 314 FYHDAPWR 321
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 65 YFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGY 118
Y +S D S CRCN + + +P DP C C+H G C+ C PGY
Sbjct: 436 YGFSRDDPSGCQLCRCNFLGTI-QVGNPCDPTTGRCICEHFAYGSQCDQCLPGY 488
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 75 GGRCR---CNGHADVCDILDPEDPYHRIC-RCQHNTCGHNCEVCCPGYEQKAWRQ 125
GGRC+ CN + D D D DP C RC HNT G C+ C GY A Q
Sbjct: 1048 GGRCKECCCNNNIDPRD-GDACDPVTGECLRCLHNTEGPRCQSCKRGYYGNALAQ 1101
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 77 RCRCNGHADVCDILDPEDPYHRIC-RCQHNTCGHNCEVCCPGY 118
RC+CN AD+C DP C C+ ++ G NCE C GY
Sbjct: 946 RCQCNRLADIC------DPITGDCLDCREHSAGRNCERCEEGY 982
>sp|P11046|LAMB1_DROME Laminin subunit beta-1 OS=Drosophila melanogaster GN=LanB1 PE=1
SV=4
Length = 1788
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 28 LQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHADVC 87
+Q + TN+R+++ + L +L+ D +Y+Y I ++ + G C C GHA C
Sbjct: 241 VQNQLKMTNLRIQMTKLHKLGDNLL---DSRLENEEKYYYGISNMVVRGSCSCYGHASQC 297
Query: 88 DILDP--------EDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCE 135
LDP + H C C HNT G NCE C + W+ + K +C+
Sbjct: 298 LPLDPAFSQADNEDGMVHGRCECTHNTKGMNCEECEDFFNDLPWKPAFGKKTNACK 353
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Query: 78 CRCNGHADVCDILDPEDPYHRIC-RCQHNTCGHNCEVCCPGY 118
C+CNGHA C DP C CQ +T G++C+ C GY
Sbjct: 883 CQCNGHAATC------DPIQGTCIDCQDSTTGYSCDSCLDGY 918
>sp|Q61087|LAMB3_MOUSE Laminin subunit beta-3 OS=Mus musculus GN=Lamb3 PE=2 SV=2
Length = 1168
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 15/135 (11%)
Query: 6 NKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRY 65
K+ ++L+D ++ S ++QE TN+R+ + ++ Q +
Sbjct: 187 GKVQLNLMDLASAIPAS-QSKKIQELGDITNLRVNFTK--------LAPVPQRGSYPPSA 237
Query: 66 FYSIKDISIGGRCRCNGHADVCDILDPEDP-----YHRICRCQHNTCGHNCEVCCPGYEQ 120
++++ + + G C C+GHAD C +P + +C CQHNT G NC+ C P Y
Sbjct: 238 YFAVSQLRLQGSCFCHGHADRC-APNPGGSTTAVQVNNVCVCQHNTAGPNCDRCAPFYNN 296
Query: 121 KAWRQSQSNKPFSCE 135
+ WR ++ C+
Sbjct: 297 RPWRPAEGQDTHECQ 311
>sp|Q96CW9|NTNG2_HUMAN Netrin-G2 OS=Homo sapiens GN=NTNG2 PE=1 SV=2
Length = 530
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 28 LQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHADVC 87
L+E+ T++R+RLLR LG + +YFY+I +I + GRC+CN HA++C
Sbjct: 243 LKEFFTLTDLRMRLLRPA--LGGTYVQREN----LYKYFYAISNIEVIGRCKCNLHANLC 296
Query: 88 DILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQS 126
+ + C C+HNT G +C C + ++WR
Sbjct: 297 SMREGS----LQCECEHNTTGPDCGKCKKNFRTRSWRAG 331
>sp|Q9HB63|NET4_HUMAN Netrin-4 OS=Homo sapiens GN=NTN4 PE=2 SV=2
Length = 628
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 25 STRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHA 84
S ++QE + TN+R++LL+ ++ + ++ T Y+I D + G C CNGHA
Sbjct: 212 SAKVQEQLKITNLRVQLLKRQSCPCQRNDLNEEPQHFTH---YAIYDFIVKGSCFCNGHA 268
Query: 85 DVCDILDPEDPY---------HRICRCQHNTCGHNCEVCCPGYEQKAWRQSQS 128
D C + P H C C+HNT G +C+ C P Y + W +
Sbjct: 269 DQCIPVHGFRPVKAPGTFHMVHGKCMCKHNTAGSHCQHCAPLYNDRPWEAADG 321
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 9/66 (13%)
Query: 78 CRCNGHADVC--DILDPEDPYHR---ICR-CQHNTCGHNCEVCCPGYE---QKAWRQSQS 128
C+CNGHAD C D+ E +R +C CQHNT G C+ C PG+ ++ + +
Sbjct: 332 CKCNGHADTCHFDVNVWEASGNRSGGVCDDCQHNTEGQYCQRCKPGFYRDLRRPFSAPDA 391
Query: 129 NKPFSC 134
KP SC
Sbjct: 392 CKPCSC 397
>sp|Q24568|NETB_DROME Netrin-B OS=Drosophila melanogaster GN=NetB PE=1 SV=1
Length = 793
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 34/103 (33%)
Query: 67 YSIKDISIGGRCRCNGHADVC----------------DILDPEDP--------YHR---- 98
Y++ D ++GGRC+CNGHA C D D + P + R
Sbjct: 394 YAVSDFAVGGRCKCNGHASECVATVSSGSGTALSDQDDGQDEDTPSAPSLANHFGRSTQM 453
Query: 99 ------ICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCE 135
C C+HNT G CE C P Y + W ++ N C+
Sbjct: 454 SAKLTMTCACKHNTAGPECERCKPFYFDRPWGRATDNDANECK 496
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,609,616
Number of Sequences: 539616
Number of extensions: 1909112
Number of successful extensions: 4423
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 3756
Number of HSP's gapped (non-prelim): 559
length of query: 135
length of database: 191,569,459
effective HSP length: 100
effective length of query: 35
effective length of database: 137,607,859
effective search space: 4816275065
effective search space used: 4816275065
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)