Query psy57
Match_columns 135
No_of_seqs 152 out of 1041
Neff 7.3
Searched_HMMs 29240
Date Sat Aug 17 00:24:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy57.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/57hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y38_A Laminin subunit alpha-5 100.0 6.7E-41 2.3E-45 274.0 7.7 135 1-135 189-323 (403)
2 4aqt_A Laminin subunit gamma-1 100.0 2.9E-36 9.8E-41 245.1 6.2 128 1-135 182-309 (375)
3 3zyj_B Netrin-G1; cell adhesio 100.0 3.6E-34 1.2E-38 235.3 5.4 123 1-134 214-354 (426)
4 3tbd_A Netrin-G2, laminet-2; l 100.0 3.5E-34 1.2E-38 229.3 3.5 117 2-128 187-316 (338)
5 4aqs_A Laminin subunit beta-1; 100.0 2.2E-32 7.4E-37 229.5 7.9 128 1-132 181-313 (525)
6 2y38_A Laminin subunit alpha-5 98.9 8.2E-10 2.8E-14 90.3 3.6 56 73-128 320-388 (403)
7 4aqt_A Laminin subunit gamma-1 98.2 2.4E-07 8.3E-12 75.1 0.4 50 73-122 306-359 (375)
8 1klo_A Laminin; glycoprotein; 97.9 3.7E-06 1.3E-10 60.4 2.1 45 74-124 52-102 (162)
9 1klo_A Laminin; glycoprotein; 97.8 5.4E-06 1.8E-10 59.5 1.8 45 78-125 1-46 (162)
10 4aqs_A Laminin subunit beta-1; 94.7 0.02 6.9E-07 47.5 3.5 48 74-122 437-484 (525)
11 3zyj_B Netrin-G1; cell adhesio 91.5 0.044 1.5E-06 44.9 0.6 39 74-122 353-395 (426)
12 2gy5_A Angiopoietin-1 receptor 79.4 0.72 2.5E-05 37.4 1.7 27 96-122 214-241 (423)
13 2gy5_A Angiopoietin-1 receptor 78.0 0.75 2.6E-05 37.3 1.4 26 96-121 261-287 (423)
14 2ddu_A Reelin; beta-jelly-roll 64.2 1.1 3.7E-05 36.3 -0.7 35 67-110 183-219 (387)
15 3e50_C Protransforming growth 38.7 19 0.00066 20.3 2.1 17 97-113 29-45 (50)
16 1edm_B Factor IX; epidermal gr 32.6 30 0.001 17.5 2.1 17 96-112 22-38 (39)
17 2e26_A Reelin, reeler protein; 31.4 12 0.00041 32.6 0.4 27 78-113 539-565 (725)
18 1k36_A Epiregulin; EGF-like fo 29.5 30 0.001 18.7 1.8 17 97-113 27-43 (46)
19 2kdp_A Histone deacetylase com 28.0 59 0.002 19.7 3.0 29 16-45 18-46 (71)
20 3k6s_B Integrin beta-2; cell r 27.5 34 0.0012 29.5 2.7 17 98-114 577-593 (687)
21 3u7u_G Neuregulin 1; signaling 27.4 21 0.0007 20.4 0.9 18 96-113 32-49 (55)
22 1egf_A Epidermal growth factor 26.9 74 0.0025 17.4 3.3 21 96-116 27-47 (53)
23 1a3p_A Epidermal growth factor 26.2 31 0.001 18.3 1.5 18 96-113 24-41 (45)
24 4e6f_A Uncharacterized protein 24.3 17 0.00059 26.2 0.2 33 1-33 18-50 (181)
25 2rnl_A Amphiregulin; AR, color 20.8 67 0.0023 17.9 2.2 26 86-113 24-49 (50)
No 1
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.7e-41 Score=274.01 Aligned_cols=135 Identities=55% Similarity=1.087 Sum_probs=123.5
Q ss_pred CCCCCCeEEEEecCCCCCCCCCCCcHHHHHHHHhccceEEeccccccccccccccCCCCCcccceEEEeecccccccccc
Q psy57 1 MEKEENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRC 80 (135)
Q Consensus 1 ~p~~~g~v~~~~l~~rp~~~~~~~s~~l~~~~~~T~lRir~~~~~~~~~~~~~~~~~~~~~~~~~~y~i~~~~v~g~C~C 80 (135)
+|+++|||+|++|+|||++.+|++|++||+|++||+|||||++++|+.++++..+..+|...++|||+|++|.++|+|+|
T Consensus 189 ~P~~~g~v~f~~l~gRP~~~~~~~s~~lq~~~~aT~iRi~~~~~~t~~~~l~~~~~~~~~~~~~yyyai~~~~vgg~C~C 268 (403)
T 2y38_A 189 VPLENGEIVVSLVNGRPGALNFSYSPLLRDFTKATNIRLRFLRTNTLLGHLMGKALRDPTVTRRYYYSIKDISIGGRCVC 268 (403)
T ss_dssp SSCSSCEEEEESSSSSGGGTTGGGCHHHHHHHEEEEEEEEEEECCCCTTCHHHHHHTCTTTGGGCCCEEEEEEEEEECCC
T ss_pred cCCCCCeEEEEecCCCCCcccCCcCHHHHhhhccceEEEEEEecCcccccccccccccccccccceeecccCcccccccc
Confidence 58999999999999999999999999999999999999999999999999887666778888999999999999999999
Q ss_pred cCCCCcCcccCCCCCCceeecCCCCCCCCCCCcCCcCccCCcCCCCCCCCCCCCC
Q psy57 81 NGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCE 135 (135)
Q Consensus 81 nGHa~~C~~~~~~~~~~~~C~C~hnT~G~~Ce~C~p~y~~~p~~p~~~~~~~~C~ 135 (135)
||||+.|++.+..+..+++|.|+|||+|.+||+|+++|+++||.+++...+++|+
T Consensus 269 nGHA~~C~~~~~~~~~~g~C~C~hnT~G~~CErC~pGy~g~p~~~at~~~~~~C~ 323 (403)
T 2y38_A 269 HGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQ 323 (403)
T ss_dssp TTBCSCEEESCTTSTTCEEECCCTTEESSSCCEECTTCCSSCCCCCCSSCCCCCC
T ss_pred CCCccccCCCCCCCccceEeECcCcCcCCCCCCCCccccCCcccccccCCCcccc
Confidence 9999999876444445689999999999999999999999999999887777774
No 2
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=100.00 E-value=2.9e-36 Score=245.09 Aligned_cols=128 Identities=36% Similarity=0.771 Sum_probs=115.6
Q ss_pred CCCCCCeEEEEecCCCCCCCCCCCcHHHHHHHHhccceEEeccccccccccccccCCCCCcccceEEEeecccccccccc
Q psy57 1 MEKEENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRC 80 (135)
Q Consensus 1 ~p~~~g~v~~~~l~~rp~~~~~~~s~~l~~~~~~T~lRir~~~~~~~~~~~~~~~~~~~~~~~~~~y~i~~~~v~g~C~C 80 (135)
+|+++|||+|++|++||++.+|++|++||||++||+|||+|++++++.+.+++ ++.+.++|||||++|.|+|+|.|
T Consensus 182 ~p~~~g~v~~~~l~~rp~~~~~~~s~~lq~~~~at~iRi~l~~~~~~~~~~~~----~~~~~~~yyYai~di~v~g~C~C 257 (375)
T 4aqt_A 182 SPLTGGNVAFSTLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDEVFN----EPKVLKSYYYAISDFAVGGRCKC 257 (375)
T ss_dssp CSSSCEEEEEETTTTCTTGGGGGGCHHHHHHTEEEEEEEEEEECCCCSGGGSC----CHHHHTTCCCEEEEEEEEEEECC
T ss_pred cCCcCCeEEEEeccCCCCcccCCcCHHHhhhhhheeeeeeecccccCcccccc----cccccccceeeecccccCceecC
Confidence 58999999999999999999999999999999999999999999998887763 55667899999999999999999
Q ss_pred cCCCCcCcccCCCCCCceeecCCCCCCCCCCCcCCcCccCCcCCCCCCCCCCCCC
Q psy57 81 NGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCE 135 (135)
Q Consensus 81 nGHa~~C~~~~~~~~~~~~C~C~hnT~G~~Ce~C~p~y~~~p~~p~~~~~~~~C~ 135 (135)
|||++.|..... ..+.|.|+|||+|.+|++|+++|++.||.+++...++.|+
T Consensus 258 ngh~s~c~~~~~---~~~~C~C~~nt~G~~Ce~C~~gy~~~p~~~g~~~~~~~C~ 309 (375)
T 4aqt_A 258 NGHASECVKNEF---DKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECL 309 (375)
T ss_dssp TTSCSCEEECTT---SCEEECCCTTEESTTSCEECTTCCSSCCCCCCSSCCCCCC
T ss_pred CCCCcccCCCCC---CCeeeeCcCCCcCCCcccCCCCCcCCCCCCCccCCCCCCC
Confidence 999999976432 4567899999999999999999999999999887777764
No 3
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=100.00 E-value=3.6e-34 Score=235.30 Aligned_cols=123 Identities=31% Similarity=0.656 Sum_probs=104.2
Q ss_pred CCCCCCeEEEEec------CCCCCCCCC-------CCcHHHHHHHHhccceEEeccccccccccccccCCCCCcccceEE
Q psy57 1 MEKEENKITISLL------DHRPSMKNF-------FNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFY 67 (135)
Q Consensus 1 ~p~~~g~v~~~~l------~~rp~~~~~-------~~s~~l~~~~~~T~lRir~~~~~~~~~~~~~~~~~~~~~~~~~~y 67 (135)
+|+++|||+|+++ .| |++.++ +.|++||||++||||||||+|++++. .+ .++.+.++|||
T Consensus 214 ~P~~~GeV~f~~~~~f~~~~g-P~~~~~~~~y~~~~~S~~Lqd~~taT~iRi~l~r~~t~~-~~-----~~~~~~~~yyY 286 (426)
T 3zyj_B 214 YTTNSKIIHFEIKDRFAFFAG-PRLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGE-IF-----VDELHLARYFY 286 (426)
T ss_dssp SSTTTTEEEECSHHHHHHHHC-SSCCCHHHHHHHHHHCHHHHHHSEEEEEEEEEEECCCSS-SS-----CCSSCGGGCCC
T ss_pred CCCCCCEEEEEeccccccccC-CCcccccccccccccCHHHHhhhcceeEEEEEeccccCC-cc-----ccccccceecc
Confidence 5899999999974 46 887764 46899999999999999999999753 22 23456689999
Q ss_pred EeecccccccccccCCCCcCcccCCCCCCceeecCCCCCCCCCCCcCCcCccCCcCCCCCC-----CCCCCC
Q psy57 68 SIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQS-----NKPFSC 134 (135)
Q Consensus 68 ~i~~~~v~g~C~CnGHa~~C~~~~~~~~~~~~C~C~hnT~G~~Ce~C~p~y~~~p~~p~~~-----~~~~~C 134 (135)
||+||.|+|+|+|||||+.|.+.. +.++|.|+|||+|++||+|+++|+++||.+|+. ..+++|
T Consensus 287 AI~d~~v~g~C~CnGHas~C~~~~----g~~~C~C~~~ttG~~CE~C~pgy~~~P~~~gt~~p~~~g~~~~C 354 (426)
T 3zyj_B 287 AISDIKVRGRCKCNLHATVCVYDN----SKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANAC 354 (426)
T ss_dssp EEEEEECEEEECCSSSCSCEEEET----TEEEECCCTTEESSSSCEECTTCCSSCCCCCBCCSSSSCBCCCC
T ss_pred eeecccccccCcCCCchhhcCCCC----CCceeeCCCCCcCCCccccccccccCcccCCcccccCCCCCCcc
Confidence 999999999999999999998753 457999999999999999999999999998863 455666
No 4
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B*
Probab=100.00 E-value=3.5e-34 Score=229.33 Aligned_cols=117 Identities=32% Similarity=0.715 Sum_probs=96.4
Q ss_pred C-CCCCeEEEEecC-----CCCCCCCC-------CCcHHHHHHHHhccceEEeccccccccccccccCCCCCcccceEEE
Q psy57 2 E-KEENKITISLLD-----HRPSMKNF-------FNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYS 68 (135)
Q Consensus 2 p-~~~g~v~~~~l~-----~rp~~~~~-------~~s~~l~~~~~~T~lRir~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 68 (135)
| .++|+|+|++++ ..|++.++ +.|++||||++||||||||+|+++. +.+.+ + ...++||||
T Consensus 187 P~~~gg~v~f~v~~r~~~~~gP~~~~~~~~y~~~~~s~~Lqd~~taT~iRi~l~r~~~~-~~~~~---~--~~~~~yyYA 260 (338)
T 3tbd_A 187 GSKKEKHVRFEVRDRFAIFAGPDLRNMDNLYTRLESAKGLKEFFTLTDLRMRLLRPALG-GTYVQ---R--ENLYKYFYA 260 (338)
T ss_dssp TSSCCCEEEECSHHHHHHHHTTTTCCHHHHHHHHHHSTTHHHHTEEEEEEEEEEECCCT-TSCCC---T--TCGGGCCCE
T ss_pred CCCCCceEEEEecccccccCCCccccccccccccccCHHHHHhhhheeeeeEeeccccC-ccccc---c--cccceeEEE
Confidence 5 557889998754 12777654 3478999999999999999999753 33221 2 235789999
Q ss_pred eecccccccccccCCCCcCcccCCCCCCceeecCCCCCCCCCCCcCCcCccCCcCCCCCC
Q psy57 69 IKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQS 128 (135)
Q Consensus 69 i~~~~v~g~C~CnGHa~~C~~~~~~~~~~~~C~C~hnT~G~~Ce~C~p~y~~~p~~p~~~ 128 (135)
|+||.|+|+|.|||||+.|.+.. +.++|.|+|||+|++|++|+|+|+++||+||+.
T Consensus 261 I~di~v~G~C~CnGHA~~C~~~~----g~~~C~C~HnT~G~~Ce~C~p~y~~~pw~pg~~ 316 (338)
T 3tbd_A 261 ISNIEVIGRCKCNLHANLCSMRE----GSLQCECEHNTTGPDCGKCKKNFRTRSWRAGSY 316 (338)
T ss_dssp EEEEECEEEECCTTBCSCEEEET----TEEEECCCTTEESTTSCEECTTCBSSCCCCCBC
T ss_pred eecceeeccccccCCcCccCCCC----CCceecCCCCCCCCCCcccCccccCCCCCCCCc
Confidence 99999999999999999999853 457899999999999999999999999999976
No 5
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=99.97 E-value=2.2e-32 Score=229.48 Aligned_cols=128 Identities=28% Similarity=0.588 Sum_probs=110.3
Q ss_pred CCCCCCeEEEEecCCCCCCCCCCCcHHHHHHHHhccceEEeccccccccccccccCCCCCcccceEEEeecccccccccc
Q psy57 1 MEKEENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRC 80 (135)
Q Consensus 1 ~p~~~g~v~~~~l~~rp~~~~~~~s~~l~~~~~~T~lRir~~~~~~~~~~~~~~~~~~~~~~~~~~y~i~~~~v~g~C~C 80 (135)
+|+++|||+|++|++||++.+ ++|++||+|++||+|||||+|++++.+.+++ .++.+.++|||||+||.|.|+|+|
T Consensus 181 ~p~~~g~v~~~~~~~~~~~~~-~~s~~l~~~~~~t~iri~~~~~~~~~~~~~~---~~~~~~~~~~Yai~di~v~grC~C 256 (525)
T 4aqs_A 181 EPSTEGEVIFRALDPAFKIED-PYSPRIQNLLKITNLRIKFVKLHTLGDNLLD---SRMEIREKYYYAVYDMVVRGNCFC 256 (525)
T ss_dssp CSTTTCEEEEESSCSSSCCSC-TTSHHHHHHHEEEEEEEEEEECCCTTCCCTT---CCHHHHTTCCCEEEEEEEEEECCC
T ss_pred CCCCCCeEEEEecCCCcccCC-CCChhhhhhhhhhhhhhheeccccccccccc---ccccccccccEEEEeeEECeEecc
Confidence 589999999999999999865 7899999999999999999999999888765 233456789999999999999999
Q ss_pred cCCCCcCcccCCC-----CCCceeecCCCCCCCCCCCcCCcCccCCcCCCCCCCCCC
Q psy57 81 NGHADVCDILDPE-----DPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPF 132 (135)
Q Consensus 81 nGHa~~C~~~~~~-----~~~~~~C~C~hnT~G~~Ce~C~p~y~~~p~~p~~~~~~~ 132 (135)
||||+.|.+.... +...+.|.|+|+|.|.+|++|.++|++.||.+++-...+
T Consensus 257 nGHa~~C~p~~g~~~~~~g~~~g~C~C~~G~~G~~Ce~C~~g~~~~p~~~~~c~~~~ 313 (525)
T 4aqs_A 257 YGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSN 313 (525)
T ss_dssp TTBCSCEECC------CCSCCCCEECCCTTEESSSSCEECTTCCSSCCCCCBTTBCC
T ss_pred CCccccCCCcCCcccCCCCCcCccccCcCCCcCCCCcCCCCccCCCccCCCcccCCC
Confidence 9999999875421 345678999999999999999999999999987655443
No 6
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}
Probab=98.88 E-value=8.2e-10 Score=90.33 Aligned_cols=56 Identities=34% Similarity=0.612 Sum_probs=45.4
Q ss_pred cccccccccCCCCcCcccC------------CCCCCceee-cCCCCCCCCCCCcCCcCccCCcCCCCCC
Q psy57 73 SIGGRCRCNGHADVCDILD------------PEDPYHRIC-RCQHNTCGHNCEVCCPGYEQKAWRQSQS 128 (135)
Q Consensus 73 ~v~g~C~CnGHa~~C~~~~------------~~~~~~~~C-~C~hnT~G~~Ce~C~p~y~~~p~~p~~~ 128 (135)
..+..|.||||++.|.++. .....+++| .|+|||+|.+||+|++|||++|+.++..
T Consensus 320 ~~C~pC~Cnghs~~C~~d~~~~~~~~s~~~~~~~~~~G~C~~C~~nt~G~~CErC~~GYyg~p~~~~~~ 388 (403)
T 2y38_A 320 NECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAPDQPLDS 388 (403)
T ss_dssp CCCCCCCCTTSCSCEEECHHHHHTTCCCCTTSCSCCCEEESSCCSSEESTTSCEECTTCEECTTSCTTS
T ss_pred ccccccccCCCCcccccCcccccccccccccccCCCCCCCCCCcCcCcCCCCCcCCCCccCCCCCCCCC
Confidence 4577999999999995421 011357999 7999999999999999999999997654
No 7
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=98.19 E-value=2.4e-07 Score=75.10 Aligned_cols=50 Identities=28% Similarity=0.538 Sum_probs=40.1
Q ss_pred cccccccccCCCCcCcccCC---CCCCceee-cCCCCCCCCCCCcCCcCccCCc
Q psy57 73 SIGGRCRCNGHADVCDILDP---EDPYHRIC-RCQHNTCGHNCEVCCPGYEQKA 122 (135)
Q Consensus 73 ~v~g~C~CnGHa~~C~~~~~---~~~~~~~C-~C~hnT~G~~Ce~C~p~y~~~p 122 (135)
..+..|.||+|+..|..+.. ....+|+| .|++|++|.+|++|++|||+.+
T Consensus 306 ~~C~~C~Cn~~g~~C~~d~~~~~c~~~~G~C~~C~~n~~G~~Ce~C~~Gyyg~~ 359 (375)
T 4aqt_A 306 SECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENFFRLG 359 (375)
T ss_dssp CCCCCCCGGGSCSCEEECHHHHHHSSCCEEECSCTTTEESTTSCEECSSEECCT
T ss_pred CCCCCCcCcCCCCCcccccccCccCCCCCCCCCCCCCCcCCCCCCCCcCcccCc
Confidence 34668999999999865321 12357999 7999999999999999999875
No 8
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=97.90 E-value=3.7e-06 Score=60.38 Aligned_cols=45 Identities=29% Similarity=0.726 Sum_probs=37.8
Q ss_pred ccccccccCCCC-----cCcccCCCCCCceee-cCCCCCCCCCCCcCCcCccCCcCC
Q psy57 74 IGGRCRCNGHAD-----VCDILDPEDPYHRIC-RCQHNTCGHNCEVCCPGYEQKAWR 124 (135)
Q Consensus 74 v~g~C~CnGHa~-----~C~~~~~~~~~~~~C-~C~hnT~G~~Ce~C~p~y~~~p~~ 124 (135)
.+..|.|++|++ .|+. .+++| .|+++|+|.+|++|+++||+.+..
T Consensus 52 ~C~~C~C~~~~~~~~~~~C~~------~tG~C~~C~~g~~G~~Ce~C~~Gy~g~~~~ 102 (162)
T 1klo_A 52 LCRPCQCNDNIDPNAVGNCNR------LTGECLKCIYNTAGFYCDRCKEGFFGNPLA 102 (162)
T ss_dssp EEEECCSTTCBCTTCSCCBCT------TTCCBCCBCTTEETTTTCEECTTEEECTTC
T ss_pred CCeeCcCCCCCCcccCCcccC------CCCcccCCCCCCcCCCcCcCchhhcCCccc
Confidence 557899999874 4543 57899 699999999999999999998865
No 9
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=97.83 E-value=5.4e-06 Score=59.54 Aligned_cols=45 Identities=31% Similarity=0.807 Sum_probs=36.1
Q ss_pred ccccCCCCcCcccCCCCCCceee-cCCCCCCCCCCCcCCcCccCCcCCC
Q psy57 78 CRCNGHADVCDILDPEDPYHRIC-RCQHNTCGHNCEVCCPGYEQKAWRQ 125 (135)
Q Consensus 78 C~CnGHa~~C~~~~~~~~~~~~C-~C~hnT~G~~Ce~C~p~y~~~p~~p 125 (135)
|.|++|+ .|+.... ...++| .|+|+|+|.+||+|+++||++|+.+
T Consensus 1 C~C~~~g-~C~~~~~--~g~~~C~~C~~g~~G~~Ce~C~~g~~g~~~~~ 46 (162)
T 1klo_A 1 CPCPGGS-SCAIVPK--TKEVVCTHCPTGTAGKRCELCDDGYFGDPLGS 46 (162)
T ss_dssp CCSCTTC-CEEECSS--SCCEEECSCCTTEESTTSCEECTTEEEETTCT
T ss_pred CcCcCcC-cccccCC--CCCEEeCCCCCCCcCCCCcCCCCCCcCCcccc
Confidence 6687765 7876421 145799 8999999999999999999999875
No 10
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=94.74 E-value=0.02 Score=47.54 Aligned_cols=48 Identities=23% Similarity=0.422 Sum_probs=25.9
Q ss_pred ccccccccCCCCcCcccCCCCCCceeecCCCCCCCCCCCcCCcCccCCc
Q psy57 74 IGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKA 122 (135)
Q Consensus 74 v~g~C~CnGHa~~C~~~~~~~~~~~~C~C~hnT~G~~Ce~C~p~y~~~p 122 (135)
.+..|.|+.+. .|......++.++.|.|+.++.|.+|++|+++|++.+
T Consensus 437 ~C~~C~C~~~g-tc~~~~~Cd~~tg~C~C~~g~~G~~Ce~C~~G~~g~~ 484 (525)
T 4aqs_A 437 GCKSCACNPLG-TIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLS 484 (525)
T ss_dssp SSEECCCCTTT-BCCSSCCBCTTTCCBCBCTTCCSTTTCC---------
T ss_pred CCccCCCCCCc-eecCCCcccCCCCEEECCCCCcCCCcccCCCCccCCC
Confidence 35567776543 2222222223567899999999999999999998764
No 11
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=91.50 E-value=0.044 Score=44.95 Aligned_cols=39 Identities=23% Similarity=0.445 Sum_probs=5.2
Q ss_pred ccccccccCCCCcCcccCCCCCCceeec----CCCCCCCCCCCcCCcCccCCc
Q psy57 74 IGGRCRCNGHADVCDILDPEDPYHRICR----CQHNTCGHNCEVCCPGYEQKA 122 (135)
Q Consensus 74 v~g~C~CnGHa~~C~~~~~~~~~~~~C~----C~hnT~G~~Ce~C~p~y~~~p 122 (135)
.+..|.|++|+..|+.. ++.|. |..++ .| .|++||++..
T Consensus 353 ~C~pC~Cn~~g~~CD~~------t~~C~ngg~C~~~~---~C-~C~~G~~G~~ 395 (426)
T 3zyj_B 353 ACIPSISSIGTNVCDNE------LLHCQNGGTCHNNV---RC-LCPAAYTGIL 395 (426)
T ss_dssp CCCCCCC----------------------------------------------
T ss_pred cccCCCCCCCcCccccC------cccCCCCCCcCCCC---CC-cCCCCCcCCC
Confidence 45678999999999763 34553 66655 67 7777777644
No 12
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=79.41 E-value=0.72 Score=37.44 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=23.1
Q ss_pred CceeecCCCCCCCCCCCc-CCcCccCCc
Q psy57 96 YHRICRCQHNTCGHNCEV-CCPGYEQKA 122 (135)
Q Consensus 96 ~~~~C~C~hnT~G~~Ce~-C~p~y~~~p 122 (135)
.++.|.|..+..|.+|+. |.++|++.+
T Consensus 214 ~~g~C~C~~G~~G~~Ce~~C~~g~~g~~ 241 (423)
T 2gy5_A 214 DTGECICPPGFMGRTCEKACELHTFGRT 241 (423)
T ss_dssp TTCCEECCTTEESTTSCEECCTTEESTT
T ss_pred CCCcEeCCCCccCCCcccccCCCCCCCC
Confidence 357899999999999997 999987654
No 13
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=78.03 E-value=0.75 Score=37.33 Aligned_cols=26 Identities=27% Similarity=0.607 Sum_probs=22.8
Q ss_pred CceeecCCCCCCCCCCCc-CCcCccCC
Q psy57 96 YHRICRCQHNTCGHNCEV-CCPGYEQK 121 (135)
Q Consensus 96 ~~~~C~C~hnT~G~~Ce~-C~p~y~~~ 121 (135)
..+.|.|..+..|.+|+. |.++|++.
T Consensus 261 ~~~~C~C~~G~~G~~C~~~C~~G~~G~ 287 (423)
T 2gy5_A 261 DPYGCSCATGWKGLQCNEACHPGFYGP 287 (423)
T ss_dssp TTTEEECCBTCBSGGGCBCCCTTBCSB
T ss_pred CCCeEEeCCCcccccccCccCCCCcCC
Confidence 357899999999999997 99999864
No 14
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Probab=64.18 E-value=1.1 Score=36.30 Aligned_cols=35 Identities=23% Similarity=0.685 Sum_probs=26.5
Q ss_pred EEeecccccccc--cccCCCCcCcccCCCCCCceeecCCCCCCCCC
Q psy57 67 YSIKDISIGGRC--RCNGHADVCDILDPEDPYHRICRCQHNTCGHN 110 (135)
Q Consensus 67 y~i~~~~v~g~C--~CnGHa~~C~~~~~~~~~~~~C~C~hnT~G~~ 110 (135)
.||.++-++..| .|+||. .|. .++|.|.....|..
T Consensus 183 WAlD~vyIg~~Cp~~CsGhG-~C~--------~g~C~Cd~G~~g~d 219 (387)
T 2ddu_A 183 FGLDGVYISEPCPSYCSGHG-DCI--------SGVCFCDLGYTAAQ 219 (387)
T ss_dssp CBCCCCEEESCCGGGGGGSE-EEE--------TTEEEECTTEEEET
T ss_pred eeEeeEEecccCccccCCCc-eec--------CCeEEecCCcccCC
Confidence 578888887776 788887 774 25899988887753
No 15
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Probab=38.74 E-value=19 Score=20.28 Aligned_cols=17 Identities=29% Similarity=0.757 Sum_probs=14.2
Q ss_pred ceeecCCCCCCCCCCCc
Q psy57 97 HRICRCQHNTCGHNCEV 113 (135)
Q Consensus 97 ~~~C~C~hnT~G~~Ce~ 113 (135)
...|.|..+..|..|+.
T Consensus 29 ~~~C~C~~gy~G~RCe~ 45 (50)
T 3e50_C 29 KPACVCHSGYVGARCEH 45 (50)
T ss_pred CeEEECCCCCcccCCCc
Confidence 45799999999998875
No 16
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Probab=32.63 E-value=30 Score=17.51 Aligned_cols=17 Identities=35% Similarity=0.712 Sum_probs=13.5
Q ss_pred CceeecCCCCCCCCCCC
Q psy57 96 YHRICRCQHNTCGHNCE 112 (135)
Q Consensus 96 ~~~~C~C~hnT~G~~Ce 112 (135)
....|.|.....|.+|+
T Consensus 22 ~~~~C~C~~G~~G~~Ce 38 (39)
T 1edm_B 22 NSYECWCPFGFEGKNCE 38 (39)
T ss_dssp TEEEEECCTTCCSTTSC
T ss_pred CceEeECCCCCcCCccC
Confidence 34678998888888886
No 17
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*
Probab=31.36 E-value=12 Score=32.64 Aligned_cols=27 Identities=30% Similarity=0.725 Sum_probs=21.3
Q ss_pred ccccCCCCcCcccCCCCCCceeecCCCCCCCCCCCc
Q psy57 78 CRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEV 113 (135)
Q Consensus 78 C~CnGHa~~C~~~~~~~~~~~~C~C~hnT~G~~Ce~ 113 (135)
..|.||. +|. .++|.|.....|..|+.
T Consensus 539 ~~C~ghG-~C~--------~G~C~Cd~G~~G~~C~~ 565 (725)
T 2e26_A 539 DMCSGHG-RCV--------QGSCVCDEQWGGLYCDE 565 (725)
T ss_dssp GGGGGSE-EEE--------TTEEEECTTEESTTSCE
T ss_pred cccCCCc-EEC--------CCCEeeCCCccCCCcCc
Confidence 3677776 675 36899999999999974
No 18
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Probab=29.54 E-value=30 Score=18.74 Aligned_cols=17 Identities=35% Similarity=0.866 Sum_probs=14.3
Q ss_pred ceeecCCCCCCCCCCCc
Q psy57 97 HRICRCQHNTCGHNCEV 113 (135)
Q Consensus 97 ~~~C~C~hnT~G~~Ce~ 113 (135)
...|.|....+|.+||.
T Consensus 27 ~~~C~C~~GytG~~Ce~ 43 (46)
T 1k36_A 27 QNYCRCEVGYTGVRCEH 43 (46)
T ss_dssp EEEEEECTTCSSTTSCC
T ss_pred CEEEECCCCCccCCCCc
Confidence 46799999999999874
No 19
>2kdp_A Histone deacetylase complex subunit SAP30; SIN3, zinc finger motif, nucleic acid interaction, nucleus, repressor, transcription; NMR {Homo sapiens}
Probab=27.96 E-value=59 Score=19.68 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=23.1
Q ss_pred CCCCCCCCCcHHHHHHHHhccceEEecccc
Q psy57 16 RPSMKNFFNSTRLQEWTRATNVRLRLLRTK 45 (135)
Q Consensus 16 rp~~~~~~~s~~l~~~~~~T~lRir~~~~~ 45 (135)
||- .++.||..+|..++-.+|+|.+...+
T Consensus 18 r~A-gnasySKRIqKtvaq~~LKL~~d~~a 46 (71)
T 2kdp_A 18 RAA-GNASFSKRIQKSISQKKVKIELDKSA 46 (71)
T ss_dssp SBC-CSCCCCHHHHHHHHHHCCSEEECTTC
T ss_pred Ccc-cchhHHHHHHHHHHHHhheeeccCCC
Confidence 443 45679999999999999999887554
No 20
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=27.48 E-value=34 Score=29.46 Aligned_cols=17 Identities=24% Similarity=0.749 Sum_probs=14.6
Q ss_pred eeecCCCCCCCCCCCcC
Q psy57 98 RICRCQHNTCGHNCEVC 114 (135)
Q Consensus 98 ~~C~C~hnT~G~~Ce~C 114 (135)
+.|.|.....|..|+.|
T Consensus 577 g~C~C~~Gy~G~~Ce~c 593 (687)
T 3k6s_B 577 NVCECHSGYQLPLCQEC 593 (687)
T ss_dssp SCBCCSTTCCTTTTCCC
T ss_pred CEEECCCCCcCCCCCCC
Confidence 56889999999999985
No 21
>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}
Probab=27.38 E-value=21 Score=20.43 Aligned_cols=18 Identities=22% Similarity=0.794 Sum_probs=15.4
Q ss_pred CceeecCCCCCCCCCCCc
Q psy57 96 YHRICRCQHNTCGHNCEV 113 (135)
Q Consensus 96 ~~~~C~C~hnT~G~~Ce~ 113 (135)
....|.|.....|.+||.
T Consensus 32 ~~y~C~C~~g~~G~~CE~ 49 (55)
T 3u7u_G 32 SRYLCKCPNEFTGDRCQN 49 (55)
T ss_dssp CCEEEEECTTEESTTSCE
T ss_pred CCEeEeCCCCCcCCCcCc
Confidence 457899999999999985
No 22
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Probab=26.92 E-value=74 Score=17.40 Aligned_cols=21 Identities=19% Similarity=0.407 Sum_probs=16.6
Q ss_pred CceeecCCCCCCCCCCCcCCc
Q psy57 96 YHRICRCQHNTCGHNCEVCCP 116 (135)
Q Consensus 96 ~~~~C~C~hnT~G~~Ce~C~p 116 (135)
....|.|.....|.+|+.=..
T Consensus 27 ~~~~C~C~~G~~G~~Ce~~~~ 47 (53)
T 1egf_A 27 DSYTCNCVIGYSGDRCQTRDL 47 (53)
T ss_dssp SCEEEECCTTCCSSSSCCCSC
T ss_pred CCEEEECCCCCcCCcCCccCc
Confidence 456899999999999976433
No 23
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1
Probab=26.18 E-value=31 Score=18.33 Aligned_cols=18 Identities=22% Similarity=0.617 Sum_probs=14.1
Q ss_pred CceeecCCCCCCCCCCCc
Q psy57 96 YHRICRCQHNTCGHNCEV 113 (135)
Q Consensus 96 ~~~~C~C~hnT~G~~Ce~ 113 (135)
....|.|.....|.+|+.
T Consensus 24 ~~~~C~C~~G~~G~~Ce~ 41 (45)
T 1a3p_A 24 DSYTCNCVIGYSGDRCQT 41 (45)
T ss_dssp SSEEEECCTTEETTTTCE
T ss_pred CCEEEEcCCCCcCCcCCc
Confidence 356799998888988864
No 24
>4e6f_A Uncharacterized protein; PF14730 family protein, DUF4468 with TBP-like fold,structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.49A {Bacteroides ovatus}
Probab=24.28 E-value=17 Score=26.21 Aligned_cols=33 Identities=15% Similarity=0.234 Sum_probs=23.6
Q ss_pred CCCCCCeEEEEecCCCCCCCCCCCcHHHHHHHH
Q psy57 1 MEKEENKITISLLDHRPSMKNFFNSTRLQEWTR 33 (135)
Q Consensus 1 ~p~~~g~v~~~~l~~rp~~~~~~~s~~l~~~~~ 33 (135)
||.-+|+|+|+.-..-|+++...-=..+..|++
T Consensus 18 VPevdGKVvFt~~i~vPg~S~~qIYd~~~~wl~ 50 (181)
T 4e6f_A 18 VPEVDGKVVFSKEFQIPGMSQAQIYDTMTKWMD 50 (181)
T ss_dssp SCEETTEEEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ccccCCEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 688899999999887788765322234566655
No 25
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=20.75 E-value=67 Score=17.89 Aligned_cols=26 Identities=23% Similarity=0.632 Sum_probs=18.0
Q ss_pred cCcccCCCCCCceeecCCCCCCCCCCCc
Q psy57 86 VCDILDPEDPYHRICRCQHNTCGHNCEV 113 (135)
Q Consensus 86 ~C~~~~~~~~~~~~C~C~hnT~G~~Ce~ 113 (135)
.|..... .....|.|..+..|..|+.
T Consensus 24 ~C~~i~~--~~~~~C~C~~gy~G~RCe~ 49 (50)
T 2rnl_A 24 ECKYIEH--LEAVTCKCQQEYFGERCGE 49 (50)
T ss_dssp EEEEETT--TTEEEEECCSSCCSSSCCC
T ss_pred EEEEecC--CCCeeEECCCCcccccccc
Confidence 6654321 1356799999999998874
Done!