RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy57
(135 letters)
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 120 bits (301), Expect = 1e-33
Identities = 74/132 (56%), Positives = 96/132 (72%)
Query: 4 EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
E +I +SL++ RP NF S L+++T+ATN+RLR LRT LLGHLM A +DPT TR
Sbjct: 192 ENGEIVVSLVNGRPGALNFSYSPLLRDFTKATNIRLRFLRTNTLLGHLMGKALRDPTVTR 251
Query: 64 RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
RY+YSIKDISIGGRC C+GHADVCD DP DP+ C CQHNTCG +C+ CCPG+ Q+ W
Sbjct: 252 RYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPW 311
Query: 124 RQSQSNKPFSCE 135
+ + ++ C+
Sbjct: 312 KPATTDSANECQ 323
Score = 32.5 bits (73), Expect = 0.032
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 13/55 (23%)
Query: 77 RCRCNGHADVC-------------DILDPEDPYHRICRCQHNTCGHNCEVCCPGY 118
C C+GHA C + + CQH+T G NCE C PG+
Sbjct: 324 SCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGF 378
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 102 bits (254), Expect = 1e-26
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 9/137 (6%)
Query: 4 EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
E ++ LD + S R+Q + TN+R++ ++ L +L+ D
Sbjct: 184 TEGEVIFRALDPAFKI-EDPYSPRIQNLLKITNLRIKFVKLHTLGDNLL---DSRMEIRE 239
Query: 64 RYFYSIKDISIGGRCRCNGHADVCDILDP-----EDPYHRICRCQHNTCGHNCEVCCPGY 118
+Y+Y++ D+ + G C C GHA C +D E H C C+HNT G NCE+C Y
Sbjct: 240 KYYYAVYDMVVRGNCFCYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFY 299
Query: 119 EQKAWRQSQSNKPFSCE 135
WR ++ +C+
Sbjct: 300 HDLPWRPAEGRNSNACK 316
Score = 35.8 bits (82), Expect = 0.002
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 77 RCRCNGHADVCDI-----LDPEDPYHRICR-CQHNTCGHNCEVCCPGY 118
+C CN H+ C L + +C CQHNT G NCE C P Y
Sbjct: 317 KCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFY 364
Score = 35.8 bits (82), Expect = 0.002
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 77 RCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGY 118
C CN + +P D C C+ G C+ C P +
Sbjct: 440 SCACNPLGTIPGG-NPCDSETGYCYCKRLVTGQRCDQCLPQH 480
Score = 28.1 bits (62), Expect = 0.84
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 6/63 (9%)
Query: 78 CRCNGHADVCDI------LDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKP 131
C C+ CRC+ + G C+VC G+ + K
Sbjct: 381 CTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKS 440
Query: 132 FSC 134
+C
Sbjct: 441 CAC 443
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 94.8 bits (235), Expect = 3e-24
Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 7/131 (5%)
Query: 4 EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
+ S L+ RPS NF NS LQEW AT++R+ L R + +P +
Sbjct: 185 TGGNVAFSTLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDEVF----NEPKVLK 240
Query: 64 RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
Y+Y+I D ++GGRC+CNGHA C + +C C+HNT G +CE C P + + W
Sbjct: 241 SYYYAISDFAVGGRCKCNGHASECV---KNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPW 297
Query: 124 RQSQSNKPFSC 134
R++ + C
Sbjct: 298 RRATAESASEC 308
Score = 37.8 bits (87), Expect = 5e-04
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 77 RCRCNGHADVC---DILDPEDPYHRIC-RCQHNTCGHNCEVCCPGY 118
C CNG + C L + C C+ NT G CE C +
Sbjct: 310 PCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENF 355
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 88.0 bits (217), Expect = 1e-21
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 10/125 (8%)
Query: 11 SLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIK 70
L + + +L+++ T++R+RLLR + D RYFY+I
Sbjct: 236 RLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLR------PAVGEIFVDELHLARYFYAIS 289
Query: 71 DISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNK 130
DI + GRC+CN HA VC D C C+HNT G +C C Y+ + W
Sbjct: 290 DIKVRGRCKCNLHATVCV----YDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLP 345
Query: 131 PFSCE 135
Sbjct: 346 IPKGA 350
Score = 31.7 bits (71), Expect = 0.049
Identities = 8/45 (17%), Positives = 11/45 (24%), Gaps = 10/45 (22%)
Query: 78 CRCNGHADVCDILDPEDPYH--------RICRCQHNTCGHNCEVC 114
+ +VCD + C C G CE
Sbjct: 357 SISSIGTNVCD--NELLHCQNGGTCHNNVRCLCPAAYTGILCEKL 399
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI,
LE-domain, N neuronal cell adhesion molecule, netrin G
ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens}
PDB: 3zyg_A* 3zyi_B*
Length = 338
Score = 85.7 bits (211), Expect = 4e-21
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 10/125 (8%)
Query: 11 SLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIK 70
L + ++ L+E+ T++R+RLLR + +YFY+I
Sbjct: 209 DLRNMDNLYTRLESAKGLKEFFTLTDLRMRLLR------PALGGTYVQRENLYKYFYAIS 262
Query: 71 DISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNK 130
+I + GRC+CN HA++C C C+HNT G +C C + ++WR
Sbjct: 263 NIEVIGRCKCNLHANLCS----MREGSLQCECEHNTTGPDCGKCKKNFRTRSWRAGSYLP 318
Query: 131 PFSCE 135
Sbjct: 319 LPHGS 323
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 44.8 bits (106), Expect = 8e-07
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 78 CRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKP 131
C C G + + ++ C T G CE+C GY + +
Sbjct: 1 CPCPGGSSCAIVPKTKEVVC--THCPTGTAGKRCELCDDGYFGDPLGSNGPVRL 52
Score = 38.3 bits (89), Expect = 2e-04
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 77 RCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCE 135
C+CN + D + + +C +NT G C+ C G+ + ++K +C
Sbjct: 55 PCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACA 113
Score = 29.0 bits (65), Expect = 0.29
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 77 RCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGY 118
C CN + V +P C+C + G +C C PGY
Sbjct: 111 ACACNPYGTVQQQ-SSCNPVTGQCQCLPHVSGRDCGTCDPGY 151
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.062
Identities = 19/112 (16%), Positives = 42/112 (37%), Gaps = 20/112 (17%)
Query: 3 KEENKITISLLDHRPSMKN----F--FNSTRLQEWTRATNVRLRLLRTKNLLGH------ 50
++ + +T ++ R + N F +N +RLQ + + L L KN+L
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 51 ---LMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRI 99
+ + + I +++ CN V ++L + ++I
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLK---NCNSPETVLEML--QKLLYQI 209
Score = 31.4 bits (70), Expect = 0.095
Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 13/61 (21%)
Query: 18 SMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSI----KDIS 73
S+++ W +L + S+ +P R+ F +
Sbjct: 336 SIRDGLA--TWDNWKHVNCDKLTTIIE-------SSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 74 I 74
I
Sbjct: 387 I 387
Score = 27.5 bits (60), Expect = 1.6
Identities = 15/101 (14%), Positives = 25/101 (24%), Gaps = 35/101 (34%)
Query: 50 HLMSMADQDPTTTRRYFYSIKDISIGGRCRCNG----HADVCD-------------ILDP 92
H S+ ++ P + SI I + + + H + D I
Sbjct: 412 HKYSLVEKQP---KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 93 EDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFS 133
D Y H G+ K + F
Sbjct: 469 LDQYF----YSH-----------IGHHLKNIEHPERMTLFR 494
>2fbm_A Y chromosome chromodomain protein 1, telomeric IS;
acetyltransferase, structural genomics, structural
genomics consortium, SGC, unknown function; 2.28A {Homo
sapiens} SCOP: c.14.1.3
Length = 291
Score = 29.6 bits (67), Expect = 0.26
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 2 EKEENKITISLLDHRPSMKNFFNSTRLQEWTRA 34
+KE+ I L R + KN N+ ++E A
Sbjct: 28 KKEDGFTQIVLST-RSTEKNALNTEVIKEIVNA 59
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation,
structural genomics consort ATP-binding, cytoskeleton,
microtubule, motor protein, NUCL binding; 2.30A {Homo
sapiens} PDB: 3mdb_A*
Length = 124
Score = 28.7 bits (64), Expect = 0.31
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 8/71 (11%)
Query: 50 HLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHADVCDI-LDPEDPYHRICRCQHNTCG 108
L+++ + DP Y +K+ ++ G A+ DI L C + G
Sbjct: 28 FLVNL-NADPALNELLVYYLKEHTLIGS------ANSQDIQLCGMGILPEHCIIDITSEG 80
Query: 109 HNCEVCCPGYE 119
Sbjct: 81 QVMLTPQKNTR 91
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 29.0 bits (65), Expect = 0.39
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 7/49 (14%)
Query: 75 GGRC----RCNGHADVC---DILDPEDPYHRICRCQHNTCGHNCEVCCP 116
C RC+G + ++++ R N C +VCC
Sbjct: 45 KKVCIVYHRCDGVTNTVTPEEVINTTGEGIFDIRENANECESYLDVCCG 93
>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics,
structural genomics consortium, SGC, unknown function;
1.90A {Homo sapiens} PDB: 2fw2_A
Length = 261
Score = 28.7 bits (65), Expect = 0.48
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 2 EKEENKITISLLDHRPSMKNFFNSTRLQEWTRA 34
K++ I L + S N N ++E A
Sbjct: 10 RKQDGFTHILLST-KSSENNSLNPEVMREVQSA 41
>1uzg_A Major envelope protein E; viral protein, membrane fusion,
flavivirus, fusion loop, CLA fusion protein,
glycoprotein; HET: NAG FUL BMA MAN; 3.50A {Dengue virus
type 3} PDB: 3g7t_A
Length = 392
Score = 28.8 bits (64), Expect = 0.56
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 12/66 (18%)
Query: 51 LMSMADQDPTTTRRYFY--SIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQH---- 104
L T R+ I +I+ RC G A + + D +C+ +
Sbjct: 45 LQKTEATQLATLRKLCIEGKITNITTDSRCPTQGEAILPEEQDQN----YVCKHTYVDRG 100
Query: 105 --NTCG 108
N CG
Sbjct: 101 WGNGCG 106
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer,
structural genomics, PSI-2, protein structure
initiative; 1.71A {Bifidobacterium adolescentis
ATCC15703}
Length = 282
Score = 28.4 bits (64), Expect = 0.74
Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 11/65 (16%)
Query: 28 LQEWTRATNVRLRLLRTKNLLGHLMSMA--DQDPTTTRRYFYSIKDISIGGRCRCNGHAD 85
Q+ + L+ G LM++ D T RR F ++ D
Sbjct: 187 AQKIGTLDGIELQ--------G-LMTIGAHVHDETVIRRGFSHLRKTRDLILASGEPGTD 237
Query: 86 VCDIL 90
C L
Sbjct: 238 RCREL 242
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate
binding, tagatose-bisphosphate aldolas
tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A
{Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A
3kao_A* 3myp_A 3myo_A
Length = 332
Score = 27.9 bits (61), Expect = 1.0
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 4 EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGH 50
I+ D R ++K +++E T A L++L ++ L +
Sbjct: 20 SNGVISALAFDQRGALKCLMAQYQMKEPTVAQMEELKVLVSEELTPY 66
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family,
glycosyltrans carbohydrate binding, membrane; 2.45A
{Mycobacterium tuberculosis} PDB: 4fiy_A*
Length = 657
Score = 27.7 bits (61), Expect = 1.3
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 21 NFFNSTRLQEWTRATNVRLRL 41
N F ++ + WT +V LR+
Sbjct: 81 NAFPASYWRRWTTCKSVVLRV 101
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 27.1 bits (59), Expect = 2.5
Identities = 17/64 (26%), Positives = 17/64 (26%), Gaps = 2/64 (3%)
Query: 74 IGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCG--HNCEVCCPGYEQKAWRQSQSNKP 131
I CN D D D C N G H C GYE Q
Sbjct: 287 ITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ 346
Query: 132 FSCE 135
CE
Sbjct: 347 RRCE 350
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc
coordination, intramolec disulfide bonds,
oxidoreductase; HET: 8ID; 2.44A {Saccharomyces
cerevisiae}
Length = 347
Score = 26.8 bits (60), Expect = 2.6
Identities = 6/19 (31%), Positives = 8/19 (42%), Gaps = 1/19 (5%)
Query: 102 CQHNTCGHNCEVCCPGYEQ 120
+ +C CE C G E
Sbjct: 92 WLNGSCMA-CEYCELGNES 109
>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin;
1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A
Length = 210
Score = 26.0 bits (57), Expect = 3.5
Identities = 5/36 (13%), Positives = 9/36 (25%)
Query: 80 CNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCC 115
C + + + +CQ C C
Sbjct: 168 CTNPCNYNNDFSNCKSLAKKSKCQTEWIKKKCPASC 203
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 26.3 bits (57), Expect = 4.4
Identities = 14/48 (29%), Positives = 14/48 (29%), Gaps = 2/48 (4%)
Query: 74 IGGRCRCNGHADVCDILDPEDPYHRICRCQHNT--CGHNCEVCCPGYE 119
I CN D D D C N C H C GYE
Sbjct: 269 ITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYE 316
>2azp_A Hypothetical protein PA1268; PA1268,APC5861,sulfur SAD, structural
genomics, PSI, protein structure initiative; 2.13A
{Pseudomonas aeruginosa}
Length = 318
Score = 25.9 bits (56), Expect = 4.6
Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 73 SIGGRCRCNGHADVCDILDPEDPY 96
+I GR + A + +L +DP+
Sbjct: 289 TIRGRAHVSAEATL--LLADDDPF 310
>4akr_A F-actin-capping protein subunit alpha; actin-binding protein; 2.20A
{Dictyostelium discoideum}
Length = 281
Score = 25.4 bits (55), Expect = 6.8
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 2 EKEENKITISLLDHRPSMKNFFNSTRLQEWT 32
E KIT+ + F++ WT
Sbjct: 142 VSEGIKITVCISTCIYKPNAFYSGRWRSVWT 172
>3aa0_A F-actin-capping protein subunit alpha-1; actin capping protein,
barbed END regulation, carmil family conformational
change; 1.70A {Gallus gallus} PDB: 2kz7_A 1izn_A 3aa1_A*
3aa6_A 3aa7_A* 3aaa_A 3aae_A 3lk2_A 3lk3_A 3lk4_A 2kxp_A
Length = 286
Score = 25.4 bits (55), Expect = 7.1
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 2 EKEENKITISLLDHRPSMKNFFNSTRLQEWT 32
+ I + H+ KNF+N EW
Sbjct: 148 IDGQQTIIACIESHQFQPKNFWNGRWRSEWK 178
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant
methionine recycling, refol transferase; HET: SR1 ADP;
1.90A {Arabidopsis thaliana}
Length = 420
Score = 25.3 bits (54), Expect = 8.8
Identities = 14/94 (14%), Positives = 24/94 (25%)
Query: 12 LLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKD 71
+L N FN + W + + + Q+ S+
Sbjct: 299 ILRTIEQTWNLFNKRFIALWDQNKDGPGEAYLADIYNNTEVLKFVQENYMRNLLHDSLGF 358
Query: 72 ISIGGRCRCNGHADVCDILDPEDPYHRICRCQHN 105
+ R G A V D E+ R +
Sbjct: 359 GAAKMIRRIVGVAHVEDFESIEEDKRRAICERSA 392
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.135 0.450
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,118,925
Number of extensions: 117386
Number of successful extensions: 593
Number of sequences better than 10.0: 1
Number of HSP's gapped: 536
Number of HSP's successfully gapped: 157
Length of query: 135
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 51
Effective length of database: 4,356,429
Effective search space: 222177879
Effective search space used: 222177879
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.2 bits)