RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy57
         (135 letters)



>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 55

 Score = 40.3 bits (94), Expect = 2e-06
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 78  CRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKP 131
           C C G +     + P+        C   T G  CE+C  GY       +   + 
Sbjct: 1   CPCPGGSSCA--IVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRL 52


>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 56

 Score = 39.5 bits (92), Expect = 4e-06
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 78  CRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGY 118
           C+CN + D   + +         +C +NT G  C+ C  G+
Sbjct: 1   CQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGF 41


>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 51

 Score = 29.9 bits (67), Expect = 0.014
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 78  CRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGY 118
           C CN +  V       +P    C+C  +  G +C  C PGY
Sbjct: 1   CACNPYGTVQQQSSC-NPVTGQCQCLPHVSGRDCGTCDPGY 40


>d1svba2 f.10.1.1 (A:1-302) Envelope glycoprotein {Tick-borne
          encephalitis virus [TaxId: 11084]}
          Length = 302

 Score = 29.0 bits (65), Expect = 0.18
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 51 LMSMADQDPTTTRRYFY--SIKDISIGGRCRCNGHA 84
          L ++  ++P  TR Y     + D  +  RC   G A
Sbjct: 45 LDAIYQENPAKTREYCLHAKLSDTKVAARCPTMGPA 80


>d1ok8a2 f.10.1.1 (A:1-297) Envelope glycoprotein {Dengue virus type
           2 [TaxId: 11060]}
          Length = 297

 Score = 27.4 bits (61), Expect = 0.58
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 12/66 (18%)

Query: 51  LMSMADQDPTTTRRYFY--SIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQH---- 104
           L+    + P T R+Y     + + +   RC   G   + +  D       +C+       
Sbjct: 45  LIKTEAKQPATLRKYCIEAKLTNTTTESRCPTQGEPTLNEEQDKR----FVCKHSMVDRG 100

Query: 105 --NTCG 108
             N CG
Sbjct: 101 WGNGCG 106


>d1wvha1 b.55.1.2 (A:1606-1738) Tensin {Chicken (Gallus gallus)
           [TaxId: 9031]}
          Length = 133

 Score = 26.1 bits (57), Expect = 0.95
 Identities = 9/64 (14%), Positives = 20/64 (31%)

Query: 52  MSMADQDPTTTRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNC 111
           +++ D       R  Y +  ++              D   P   +  + R Q +T  + C
Sbjct: 50  ITLTDNQRKLFFRRHYPLNTVTFCDLDPQERKWTKTDGSGPAKLFGFVARKQGSTTDNVC 109

Query: 112 EVCC 115
            +  
Sbjct: 110 HLFA 113


>d1y5ia2 c.81.1.1 (A:1-1074) Respiratory nitrate reductase 1 alpha
           chain {Escherichia coli [TaxId: 562]}
          Length = 1074

 Score = 26.7 bits (58), Expect = 1.1
 Identities = 5/13 (38%), Positives = 6/13 (46%)

Query: 104 HNTCGHNCEVCCP 116
            +T G NC   C 
Sbjct: 46  RSTHGVNCTGSCS 58


>d1izna_ e.43.1.1 (A:) Capz alpha-1 subunit {Chicken (Gallus gallus)
           [TaxId: 9031]}
          Length = 275

 Score = 25.9 bits (57), Expect = 1.6
 Identities = 8/31 (25%), Positives = 12/31 (38%)

Query: 2   EKEENKITISLLDHRPSMKNFFNSTRLQEWT 32
              +  I   +  H+   KNF+N     EW 
Sbjct: 142 IDGQQTIIACIESHQFQPKNFWNGRWRSEWK 172


>d1dkia_ d.3.1.1 (A:) Streptococcal pyrogenic exotoxin B
           {Streptococcus pyogenes [TaxId: 1314]}
          Length = 335

 Score = 25.0 bits (54), Expect = 3.5
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 74  IGGRCRCNGHADVCDILDPEDPYH 97
             G  +  GHA V D  D  + YH
Sbjct: 268 YQGVGKVGGHAFVIDGADGRNFYH 291


>d1hf2a1 b.80.3.1 (A:100-206) Cell-division inhibitor MinC,
           C-terminal domain {Thermotoga maritima [TaxId: 2336]}
          Length = 107

 Score = 24.3 bits (53), Expect = 3.7
 Identities = 5/39 (12%), Positives = 11/39 (28%), Gaps = 11/39 (28%)

Query: 71  DISIGGRCRCNGHADV---------CDILDPEDPYHRIC 100
            + + G+ + N  A +            L       +I 
Sbjct: 38  SVVVFGKAQGNIRAGLNEGGQAVVAALDLQTS--LIQIA 74


>d1vtxa_ g.3.6.2 (A:) Atracotoxin-hvI (versutoxin) {Australian
           funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
          Length = 42

 Score = 22.3 bits (47), Expect = 7.9
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 100 CRCQHNTCGHNCEVCCPGYEQKAWRQSQSN 129
           C  + N CG   + CCP     AW   Q +
Sbjct: 1   CAKKRNWCGKTEDCCCPMKCVYAWYNEQGS 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.135    0.450 

Gapped
Lambda     K      H
   0.267   0.0607    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 550,277
Number of extensions: 25949
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 57
Length of query: 135
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,364,116
Effective search space: 80482844
Effective search space used: 80482844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.5 bits)