RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5700
(315 letters)
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity,
glycolysis, , isothermal titration calorimetry, lyase;
1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A
1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Length = 439
Score = 393 bits (1011), Expect = e-136
Identities = 145/201 (72%), Positives = 165/201 (82%), Gaps = 7/201 (3%)
Query: 3 ISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGKGV 62
I KI AR+I DSRGNPTVEVDL T GLFRAAVPSGASTGIYEALELRD DK Y GKGV
Sbjct: 2 IEKIWAREILDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDGDKQRYLGKGV 61
Query: 63 TKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAG 122
KAV IN+ IAPAL+ V +Q+++D M++LDGTENKSKFGANAILGVSLAV KAG
Sbjct: 62 LKAVDHINSTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAG 121
Query: 123 AAKKGVPLYKHLADLAGNSNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGKLRRVASS 182
AA++ +PLY+H+A LAGNS++ILPVPAFNVINGGSHAGNKLAMQEFMILP G A S
Sbjct: 122 AAERELPLYRHIAQLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVG-----AES 176
Query: 183 FLLREAMKIGSEVYHHLKKVI 203
F R+AM++G+EVYH LK VI
Sbjct: 177 F--RDAMRLGAEVYHTLKGVI 195
Score = 164 bits (418), Expect = 1e-47
Identities = 59/78 (75%), Positives = 62/78 (79%)
Query: 223 ISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGKGV 282
I KI AR+I DSRGNPTVEVDL T GLFRAAVPSGASTGIYEALELRD DK Y GKGV
Sbjct: 2 IEKIWAREILDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDGDKQRYLGKGV 61
Query: 283 TKAVGFINNDIAPALLKE 300
KAV IN+ IAPAL+
Sbjct: 62 LKAVDHINSTIAPALISS 79
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A
{Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB:
1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A
4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A*
2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Length = 436
Score = 389 bits (1002), Expect = e-135
Identities = 125/203 (61%), Positives = 159/203 (78%), Gaps = 9/203 (4%)
Query: 3 ISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGKGV 62
+SK++AR ++DSRGNPTVEV+LTTE G+FR+ VPSGASTG++EALE+RD DK+ + GKGV
Sbjct: 2 VSKVYARSVYDSRGNPTVEVELTTEKGVFRSIVPSGASTGVHEALEMRDGDKSKWMGKGV 61
Query: 63 TKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAG 122
AV +N+ IAPA +K + +V QK +D+F+I LDGT NKSK GANAILGVSLA ++A
Sbjct: 62 LHAVKNVNDVIAPAFVKANIDVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRAA 121
Query: 123 AAKKGVPLYKHLADLAGN--SNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGKLRRVA 180
AA+K VPLYKHLADL+ + S +LPVP NV+NGGSHAG LA+QEFMI PTG A
Sbjct: 122 AAEKNVPLYKHLADLSKSKTSPYVLPVPFLNVLNGGSHAGGALALQEFMIAPTG-----A 176
Query: 181 SSFLLREAMKIGSEVYHHLKKVI 203
+F EA++IGSEVYH+LK +
Sbjct: 177 KTF--AEALRIGSEVYHNLKSLT 197
Score = 164 bits (419), Expect = 7e-48
Identities = 49/78 (62%), Positives = 65/78 (83%)
Query: 223 ISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGKGV 282
+SK++AR ++DSRGNPTVEV+LTTE G+FR+ VPSGASTG++EALE+RD DK+ + GKGV
Sbjct: 2 VSKVYARSVYDSRGNPTVEVELTTEKGVFRSIVPSGASTGVHEALEMRDGDKSKWMGKGV 61
Query: 283 TKAVGFINNDIAPALLKE 300
AV +N+ IAPA +K
Sbjct: 62 LHAVKNVNDVIAPAFVKA 79
>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba
histolytica}
Length = 441
Score = 389 bits (1001), Expect = e-135
Identities = 122/203 (60%), Positives = 152/203 (74%), Gaps = 9/203 (4%)
Query: 1 MPISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGK 60
M I K+HAR+I DSRGNPT+EV++TT G+FR+ VPSGASTG++EA+ELRD DK Y GK
Sbjct: 6 MSIQKVHAREILDSRGNPTIEVEITTGKGMFRSCVPSGASTGVHEAVELRDGDKKRYGGK 65
Query: 61 GVTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAK 120
GV KAV +N I PALL V Q E+DE MIKLDGT NK K GANAILG S+++ +
Sbjct: 66 GVLKAVENVNTIIGPALLG--KNVLNQAELDEMMIKLDGTNNKGKLGANAILGCSMSICR 123
Query: 121 AGAAKKGVPLYKHLADLAGNSNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGKLRRVA 180
A AA+KG+PLYK+LA+L G+ + +PVP FNVINGG+HAGN LAMQEFMI PTG A
Sbjct: 124 AAAAEKGLPLYKYLAELTGHKEMTMPVPCFNVINGGAHAGNALAMQEFMICPTG-----A 178
Query: 181 SSFLLREAMKIGSEVYHHLKKVI 203
++F EA+++ +E Y LK VI
Sbjct: 179 TNF--HEALRMAAETYQCLKVVI 199
Score = 166 bits (422), Expect = 3e-48
Identities = 51/79 (64%), Positives = 62/79 (78%)
Query: 221 MPISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGK 280
M I K+HAR+I DSRGNPT+EV++TT G+FR+ VPSGASTG++EA+ELRD DK Y GK
Sbjct: 6 MSIQKVHAREILDSRGNPTIEVEITTGKGMFRSCVPSGASTGVHEAVELRDGDKKRYGGK 65
Query: 281 GVTKAVGFINNDIAPALLK 299
GV KAV +N I PALL
Sbjct: 66 GVLKAVENVNTIIGPALLG 84
>2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei}
SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A
2pu0_A 2pu1_A* 1oep_A
Length = 432
Score = 385 bits (992), Expect = e-134
Identities = 120/203 (59%), Positives = 149/203 (73%), Gaps = 9/203 (4%)
Query: 1 MPISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGK 60
M I K+H R++ DSRGNPTVEV++TTE G+FR+AVPSGASTG+YEA ELRD DK Y GK
Sbjct: 4 MTIQKVHGREVLDSRGNPTVEVEVTTEKGVFRSAVPSGASTGVYEACELRDGDKKRYVGK 63
Query: 61 GVTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAK 120
G +AV +N I PAL+ + +Q+E+D M++LDGT NK K GANAILG S+A++K
Sbjct: 64 GCLQAVKNVNEVIGPALIG--RDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISK 121
Query: 121 AGAAKKGVPLYKHLADLAGNSNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGKLRRVA 180
A AA KGVPLY++LA LAG + LPVP FNVINGG HAGN L QEFMI P A
Sbjct: 122 AAAAAKGVPLYRYLASLAGTKELRLPVPCFNVINGGKHAGNALPFQEFMIAPVK-----A 176
Query: 181 SSFLLREAMKIGSEVYHHLKKVI 203
+SF EA+++GSEVYH L+ +I
Sbjct: 177 TSF--SEALRMGSEVYHSLRGII 197
Score = 165 bits (421), Expect = 3e-48
Identities = 50/79 (63%), Positives = 61/79 (77%)
Query: 221 MPISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGK 280
M I K+H R++ DSRGNPTVEV++TTE G+FR+AVPSGASTG+YEA ELRD DK Y GK
Sbjct: 4 MTIQKVHGREVLDSRGNPTVEVEVTTEKGVFRSAVPSGASTGVYEACELRDGDKKRYVGK 63
Query: 281 GVTKAVGFINNDIAPALLK 299
G +AV +N I PAL+
Sbjct: 64 GCLQAVKNVNEVIGPALIG 82
>3otr_A Enolase; structural genomics, center for structural genomics of
infec diseases, csgid, alpha-beta barrel, TIM barrel;
2.75A {Toxoplasma gondii}
Length = 452
Score = 369 bits (951), Expect = e-127
Identities = 125/211 (59%), Positives = 151/211 (71%), Gaps = 17/211 (8%)
Query: 1 MPISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGK 60
+ I I AR+I DSRGNPT+EVD++TE G+FRAAVPSGASTGIYEALELRD D Y GK
Sbjct: 2 VVIKDIVAREILDSRGNPTIEVDVSTEGGVFRAAVPSGASTGIYEALELRDKDPKRYLGK 61
Query: 61 GVTKAVGFINNDIAPALLKESFEVTQQKEIDEFMI-KLDGTEN-----KSKFGANAILGV 114
GV AV + +I PALL + QK ID M+ +LDGT+N KSK GANAILGV
Sbjct: 62 GVLNAVEIVRQEIKPALLG--KDPCDQKGIDMLMVEQLDGTKNEWGYSKSKLGANAILGV 119
Query: 115 SLAVAKAGAAKKGVPLYKHLADLAGNS--NIILPVPAFNVINGGSHAGNKLAMQEFMILP 172
S+A +AGAA KG+PLYK++A LAG + +++PVP FNVINGG HAGN LA+QEF+I P
Sbjct: 120 SIACCRAGAASKGLPLYKYIATLAGKTIDKMVMPVPFFNVINGGEHAGNGLALQEFLIAP 179
Query: 173 TGKLRRVASSFLLREAMKIGSEVYHHLKKVI 203
G A + REA++ GSE YHHLK VI
Sbjct: 180 VG-----APNI--REAIRYGSETYHHLKNVI 203
Score = 164 bits (417), Expect = 2e-47
Identities = 52/79 (65%), Positives = 60/79 (75%)
Query: 221 MPISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGK 280
+ I I AR+I DSRGNPT+EVD++TE G+FRAAVPSGASTGIYEALELRD D Y GK
Sbjct: 2 VVIKDIVAREILDSRGNPTIEVDVSTEGGVFRAAVPSGASTGIYEALELRDKDPKRYLGK 61
Query: 281 GVTKAVGFINNDIAPALLK 299
GV AV + +I PALL
Sbjct: 62 GVLNAVEIVRQEIKPALLG 80
>2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural
GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii}
Length = 427
Score = 349 bits (899), Expect = e-119
Identities = 112/205 (54%), Positives = 140/205 (68%), Gaps = 14/205 (6%)
Query: 1 MPISKIHARQIFDSRGNPTVEVDLTTELG-LFRAAVPSGASTGIYEALELRDNDKAHYHG 59
I I AR++ DSRGNPTVEV++ T+ A VPSGASTG +EALELRD +K + G
Sbjct: 9 FEIKDIVAREVIDSRGNPTVEVEVITKGNGYGSAIVPSGASTGTHEALELRDKEKR-FGG 67
Query: 60 KGVTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVA 119
KGV AV +N+ I P +L ++ Q+EID MI+LDGT NKS+ GANAIL VSLAVA
Sbjct: 68 KGVLMAVENVNSIIRPEILG--YDARMQREIDTIMIELDGTPNKSRLGANAILAVSLAVA 125
Query: 120 KAGAAKKGVPLYKHLADLAGNSNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGKLRRV 179
KA AA +PLYK+ L G ++ ++PVP NVINGG HAGN L +QEFMI+P G
Sbjct: 126 KAAAATAKIPLYKY---LGGFNSYVMPVPMMNVINGGKHAGNDLDLQEFMIMPVG----- 177
Query: 180 ASSFLLREAMKIGSEVYHHLKKVIN 204
A+S EA+++GSEVYH LK VI
Sbjct: 178 ATSI--SEAVRMGSEVYHVLKNVIL 200
Score = 149 bits (379), Expect = 5e-42
Identities = 43/80 (53%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Query: 220 RMPISKIHARQIFDSRGNPTVEVDLTTELG-LFRAAVPSGASTGIYEALELRDNDKAHYH 278
R I I AR++ DSRGNPTVEV++ T+ A VPSGASTG +EALELRD +K +
Sbjct: 8 RFEIKDIVAREVIDSRGNPTVEVEVITKGNGYGSAIVPSGASTGTHEALELRDKEKR-FG 66
Query: 279 GKGVTKAVGFINNDIAPALL 298
GKGV AV +N+ I P +L
Sbjct: 67 GKGVLMAVENVNSIIRPEIL 86
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli}
SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A
Length = 431
Score = 317 bits (815), Expect = e-107
Identities = 116/204 (56%), Positives = 140/204 (68%), Gaps = 11/204 (5%)
Query: 3 ISKIHARQIFDSRGNPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKG 61
I KI R+I DSRGNPTVE ++ E G AA PSGASTG EALELRD DK+ + GKG
Sbjct: 3 IVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKG 62
Query: 62 VTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKA 121
VTKAV +N IA AL+ + Q ID+ MI LDGTENKSKFGANAIL VSLA AKA
Sbjct: 63 VTKAVAAVNGPIAQALI--GKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKA 120
Query: 122 GAAKKGVPLYKHLADLAGNSNI-ILPVPAFNVINGGSHAGNKLAMQEFMILPTGKLRRVA 180
AA KG+PLY+H+A+L G +PVP N+INGG HA N + +QEFMI P G A
Sbjct: 121 AAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVG-----A 175
Query: 181 SSFLLREAMKIGSEVYHHLKKVIN 204
+ +EA+++GSEV+HHL KV+
Sbjct: 176 KTV--KEAIRMGSEVFHHLAKVLK 197
Score = 143 bits (362), Expect = 2e-39
Identities = 47/77 (61%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
Query: 223 ISKIHARQIFDSRGNPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKG 281
I KI R+I DSRGNPTVE ++ E G AA PSGASTG EALELRD DK+ + GKG
Sbjct: 3 IVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKG 62
Query: 282 VTKAVGFINNDIAPALL 298
VTKAV +N IA AL+
Sbjct: 63 VTKAVAAVNGPIAQALI 79
>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}
Length = 428
Score = 314 bits (808), Expect = e-106
Identities = 105/203 (51%), Positives = 131/203 (64%), Gaps = 12/203 (5%)
Query: 3 ISKIHARQIFDSRGNPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKG 61
I+ I+A +I DSR NPT+EV +T + AAVPSGASTG EA+ELRDND Y GKG
Sbjct: 5 ITDINAHEILDSRANPTLEVRVTLSSQAYGCAAVPSGASTGEREAVELRDNDLERYGGKG 64
Query: 62 VTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKA 121
V +AV +N I ALL + Q+EID MI+LDGTENK+ GANAILGVSLAVA A
Sbjct: 65 VLQAVENVNGPIRDALL--GQDPRSQEEIDRIMIELDGTENKANLGANAILGVSLAVAYA 122
Query: 122 GAAKKGVPLYKHLADLAGNSNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGKLRRVAS 181
A +PLY++L +PVP N+INGG+HA N L QEFMI+P G A
Sbjct: 123 AANNADLPLYRYLGGD--GGPFSMPVPMMNIINGGAHATNNLDFQEFMIVPVG-----AP 175
Query: 182 SFLLREAMKIGSEVYHHLKKVIN 204
+F EA++ G+EV+H LKK +
Sbjct: 176 TF--AEALRYGAEVFHALKKRLV 196
Score = 142 bits (360), Expect = 2e-39
Identities = 43/77 (55%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Query: 223 ISKIHARQIFDSRGNPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKG 281
I+ I+A +I DSR NPT+EV +T + AAVPSGASTG EA+ELRDND Y GKG
Sbjct: 5 ITDINAHEILDSRANPTLEVRVTLSSQAYGCAAVPSGASTGEREAVELRDNDLERYGGKG 64
Query: 282 VTKAVGFINNDIAPALL 298
V +AV +N I ALL
Sbjct: 65 VLQAVENVNGPIRDALL 81
>1w6t_A Enolase; bacterial infection, surface protein, moonlighting
protein, glycolysis, phosphopyruvate hydratase, lyase;
HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP:
c.1.11.1 d.54.1.1 PDB: 1iyx_A
Length = 444
Score = 315 bits (809), Expect = e-106
Identities = 104/203 (51%), Positives = 138/203 (67%), Gaps = 13/203 (6%)
Query: 3 ISKIHARQIFDSRGNPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKG 61
I+ ++AR++ DSRGNPT+EV++ TE G F R VPSGASTG +EA+ELRD DK+ Y G G
Sbjct: 14 ITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRYGGLG 73
Query: 62 VTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKA 121
KAV +NN IA A++ ++V Q+ ID MI LDGT NK K GANAILGVS+AVA+A
Sbjct: 74 TQKAVDNVNNIIAEAII--GYDVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARA 131
Query: 122 GAAKKGVPLYKHLADLAGNSNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGKLRRVAS 181
A +PLY +L +LP P N+INGGSH+ +A QEFMILP G A
Sbjct: 132 AADYLEIPLYSYLGGFNTK---VLPTPMMNIINGGSHSDAPIAFQEFMILPVG-----AP 183
Query: 182 SFLLREAMKIGSEVYHHLKKVIN 204
+F +EA++ G+E++H LKK++
Sbjct: 184 TF--KEALRYGAEIFHALKKILK 204
Score = 143 bits (363), Expect = 1e-39
Identities = 44/77 (57%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Query: 223 ISKIHARQIFDSRGNPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKG 281
I+ ++AR++ DSRGNPT+EV++ TE G F R VPSGASTG +EA+ELRD DK+ Y G G
Sbjct: 14 ITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRYGGLG 73
Query: 282 VTKAVGFINNDIAPALL 298
KAV +NN IA A++
Sbjct: 74 TQKAVDNVNNIIAEAII 90
>3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A
{Anaerostipes caccae}
Length = 449
Score = 314 bits (806), Expect = e-105
Identities = 102/205 (49%), Positives = 132/205 (64%), Gaps = 13/205 (6%)
Query: 1 MPISKIHARQIFDSRGNPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHG 59
+ I K+ R+I DSRGNPTVE ++ G+ R PSGASTG +EALELRD DK + G
Sbjct: 26 LEIEKVIGREIIDSRGNPTVEAEVYLAGGVTGRGTAPSGASTGEFEALELRDGDKGRFGG 85
Query: 60 KGVTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVA 119
KGVTKAV IN +I+ L + + +D MI DGT++KSKFGANA+L VS+A A
Sbjct: 86 KGVTKAVQNINTEISEILS--GMDASDIYAVDRAMIDADGTKDKSKFGANAVLAVSIACA 143
Query: 120 KAGAAKKGVPLYKHLADLAGNSNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGKLRRV 179
KA AA GVPLY+ L L N LPVP N++NGG+HA N + +QEFMI+P G
Sbjct: 144 KAAAAALGVPLYRFLGGLNAN---RLPVPMMNILNGGAHAANTVDVQEFMIMPVG----- 195
Query: 180 ASSFLLREAMKIGSEVYHHLKKVIN 204
A SF REA++ +EV+H L ++
Sbjct: 196 AESF--REALRQCTEVFHALAGLLK 218
Score = 144 bits (365), Expect = 7e-40
Identities = 47/103 (45%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 197 HHLKKVINTQVRKQVFVRFYSSVRMPISKIHARQIFDSRGNPTVEVDLTTELGLF-RAAV 255
HH + + F S + I K+ R+I DSRGNPTVE ++ G+ R
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMNYLEIEKVIGREIIDSRGNPTVEAEVYLAGGVTGRGTA 61
Query: 256 PSGASTGIYEALELRDNDKAHYHGKGVTKAVGFINNDIAPALL 298
PSGASTG +EALELRD DK + GKGVTKAV IN +I+ L
Sbjct: 62 PSGASTGEFEALELRDGDKGRFGGKGVTKAVQNINTEISEILS 104
>3qn3_A Enolase; structural genomics, center for structural genomics of
infec diseases, csgid, glycolysis, lyase; 2.13A
{Campylobacter jejuni}
Length = 417
Score = 305 bits (785), Expect = e-102
Identities = 97/203 (47%), Positives = 129/203 (63%), Gaps = 14/203 (6%)
Query: 3 ISKIHARQIFDSRGNPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKG 61
I + A ++ DSRGNPTV+ ++T G A VPSGASTG EALELRDND+ + GKG
Sbjct: 7 IEDVRAYEVLDSRGNPTVKAEVTLSDGSVGAAIVPSGASTGSKEALELRDNDE-RFGGKG 65
Query: 62 VTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKA 121
V KAV +N IA +L + Q ++D+ + +LDGT N S GANA LGVS+A A+A
Sbjct: 66 VLKAVANVNETIADEIL--GLDAFNQTQLDDTLRELDGTNNYSNLGANATLGVSMATARA 123
Query: 122 GAAKKGVPLYKHLADLAGNSNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGKLRRVAS 181
AA G+PLY++ L G + ILPVP N+INGG+HA N + QEFMI+P G +
Sbjct: 124 AAAALGMPLYRY---LGGANASILPVPMCNIINGGAHANNNVDFQEFMIMPFG-----FT 175
Query: 182 SFLLREAMKIGSEVYHHLKKVIN 204
SF +EA++ E+Y LKK +
Sbjct: 176 SF--KEALRSVCEIYAILKKELA 196
Score = 136 bits (345), Expect = 3e-37
Identities = 41/77 (53%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Query: 223 ISKIHARQIFDSRGNPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKG 281
I + A ++ DSRGNPTV+ ++T G A VPSGASTG EALELRDND+ + GKG
Sbjct: 7 IEDVRAYEVLDSRGNPTVKAEVTLSDGSVGAAIVPSGASTGSKEALELRDNDE-RFGGKG 65
Query: 282 VTKAVGFINNDIAPALL 298
V KAV +N IA +L
Sbjct: 66 VLKAVANVNETIADEIL 82
>1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A
{Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB:
1kd0_A* 3zvi_A 3zvh_A
Length = 413
Score = 43.1 bits (101), Expect = 6e-05
Identities = 31/166 (18%), Positives = 54/166 (32%), Gaps = 22/166 (13%)
Query: 19 TVEVDLTTELGLF---RAAVPSGASTGIYEALELRDNDKAHYHGKGVTKAVGFINNDIAP 75
++ V L E G A + G + L L + + I +IAP
Sbjct: 52 SISVLLVLEDGQVAHGDCAAVQYSGAGGRDPLFLAKD------------FIPVIEKEIAP 99
Query: 76 ALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAI-LGVSLAVAKAGAAKKGVPLYKHL 134
L+ + D AI G++ A+ A A + V + + +
Sbjct: 100 KLIGREIT-----NFKPMAEEFDKMTVNGNRLHTAIRYGITQAILDAVAKTRKVTMAEVI 154
Query: 135 ADLAGNSNIILPVPAFNVINGGSHAG-NKLAMQEFMILPTGKLRRV 179
D I VP F + +K+ ++E +LP + V
Sbjct: 155 RDEYNPGAEINAVPVFAQSGDDRYDNVDKMIIKEADVLPHALINNV 200
>1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel;
1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1
PDB: 1kkr_A*
Length = 413
Score = 39.3 bits (91), Expect = 0.001
Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 7/116 (6%)
Query: 66 VGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAI-LGVSLAVAKAGAA 124
+ F+N+ I P L + D A+ G+S A+ A A
Sbjct: 90 IPFLNDHIKPLLEGRDVD-----AFLPNARFFDKLRIDGNLLHTAVRYGLSQALLDATAL 144
Query: 125 KKGVPLYKHLADLAGNSNIILPVPAFNVINGGSHAG-NKLAMQEFMILPTGKLRRV 179
G + + D + +P F + +K+ ++ +LP + V
Sbjct: 145 ASGRLKTEVVCDEWQLPCVPEAIPLFGQSGDDRYIAVDKMILKGVDVLPHALINNV 200
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.008
Identities = 34/222 (15%), Positives = 59/222 (26%), Gaps = 88/222 (39%)
Query: 8 ARQIFD-----------------SRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELR 50
A+ +++ NP + G G +R
Sbjct: 1642 AQDVWNRADNHFKDTYGFSILDIVINNPV------------NLTIHFGGEKG----KRIR 1685
Query: 51 DNDKAH-YH----GKGVTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSK 105
+N A + GK T+ I +I +F +K L T+
Sbjct: 1686 ENYSAMIFETIVDGKLKTEK---IFKEINEHSTSYTFR--SEKG------LLSATQF--- 1731
Query: 106 FGAN-AILGVSLAVAKAGAAKKGVPLYK----H-------LADLAGNSNIILPVPAF--- 150
A+ + A + +K +P H LA LA ++ + +
Sbjct: 1732 --TQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLAD----VMSIESLVEV 1785
Query: 151 ---------NVINGGSHAGNKLAMQEFMILPTGKLRRVASSF 183
+ + M I P RVA+SF
Sbjct: 1786 VFYRGMTMQVAVPRDELGRSNYGM--IAINPG----RVAASF 1821
Score = 35.4 bits (81), Expect = 0.027
Identities = 41/222 (18%), Positives = 66/222 (29%), Gaps = 62/222 (27%)
Query: 78 LKESFEVTQQKEIDEFMIKLDGTENKS------KFGANAILG-VSLAVAKAGAAKKGVPL 130
L+E F + + F E + KF LG VS V + + L
Sbjct: 33 LQEQFNKILPEPTEGFA---ADDEPTTPAELVGKF-----LGYVSSLVEPSKVGQFDQVL 84
Query: 131 YKHLAD-----LAGNSNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGKLRRVASSFLL 185
L + L GN +I HA LA + +L V + L+
Sbjct: 85 NLCLTEFENCYLEGN-DI--------------HA---LAAK---LLQENDTTLVKTKELI 123
Query: 186 REAMKIGSEVYHHLKKVINTQVRKQVFVRFYSSVRMPISKIHARQIFDSRGNPTVEVDLT 245
+ Y + + K+ + +V +++ A IF +GN +
Sbjct: 124 K--------NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA--IFGGQGNTDDYFE-- 171
Query: 246 TEL--------GLFRAAVPSGASTGIYEALELRDNDKAHYHG 279
EL L + A T D +K G
Sbjct: 172 -ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.095
Identities = 41/318 (12%), Positives = 89/318 (27%), Gaps = 100/318 (31%)
Query: 9 RQIFDSRGNPT---VEVD-----LTTE--LGLFRAAV-------PSGASTG-------IY 44
+Q+ D T + +D LT + L + P T I
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII- 333
Query: 45 EALELRDNDK-----AHYHGKGVTKAVG-FINNDIAPALLKESFE----------VTQQ- 87
A +RD H + +T + +N + PA ++ F+ +
Sbjct: 334 -AESIRDGLATWDNWKHVNCDKLTTIIESSLNV-LEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 88 --------KEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLYKHLADLAG 139
+ D ++ ++ S L K+ + +
Sbjct: 392 LSLIWFDVIKSDVMVV-VNKLHKYS-----------LV------EKQPKESTISIPSIYL 433
Query: 140 NSNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGKLRRVASSFLLREAMKIGSEVY--- 196
+ N+ A+ ++ + +F + + + Y
Sbjct: 434 ELKV--------------KLENEYALHRSIV----DHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 197 ---HHLKKVINTQVRKQVFVRFYSSVRMPISKIHARQIFDSRGNPTVEVDLTTELGLFRA 253
HHLK + + + R +F + R KI R + ++ +L ++
Sbjct: 476 HIGHHLKNIEHPE-RMTLFRMVFLDFRFLEQKI--RHDSTAWNASGSILNTLQQLKFYKP 532
Query: 254 AVPSGASTGIYEALELRD 271
+ + YE L +
Sbjct: 533 YICD--NDPKYERL-VNA 547
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for
structural genomics, protein struct initiative, PSI,
structural genomics; 2.00A {Pseudomonas aeruginosa}
SCOP: d.291.1.1
Length = 78
Score = 28.6 bits (64), Expect = 0.71
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 8/49 (16%)
Query: 168 FMI-----LPTGKLRRVASSFLLREAMKIGSEVYHHLKKVINTQVRKQV 211
M+ L L + F+ RE G E ++ + R +
Sbjct: 2 HMLIPHDLLEADTLNNLLEDFVTREGTDNGDETPLDVRV---ERARHAL 47
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.86
Identities = 7/13 (53%), Positives = 9/13 (69%), Gaps = 1/13 (7%)
Query: 72 DIAPAL-LKESFE 83
D APAL +K + E
Sbjct: 35 DSAPALAIKATME 47
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 2.8
Identities = 6/34 (17%), Positives = 18/34 (52%)
Query: 72 DIAPALLKESFEVTQQKEIDEFMIKLDGTENKSK 105
D A ++++ + +K+++E+ + K+K
Sbjct: 102 DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
>1lm7_A Subdomain of desmoplakin carboxy-terminal domain (DPCT); plakin
repeat, structural protein; 3.00A {Homo sapiens} SCOP:
d.211.2.1
Length = 248
Score = 28.0 bits (62), Expect = 3.8
Identities = 12/67 (17%), Positives = 24/67 (35%)
Query: 185 LREAMKIGSEVYHHLKKVINTQVRKQVFVRFYSSVRMPISKIHARQIFDSRGNPTVEVDL 244
L +AM H +++ Q+ + S R+P+ + R F+ + +
Sbjct: 142 LFQAMNKELIEKGHGIRLLEAQIATGGIIDPKESHRLPVDIAYKRGYFNEELSEILSDPS 201
Query: 245 TTELGLF 251
G F
Sbjct: 202 DDTKGFF 208
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces
pombe}
Length = 450
Score = 27.1 bits (60), Expect = 7.6
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 8/78 (10%)
Query: 58 HGKGVTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIK-LDGTENKSKFGANAILGV-- 114
+ V N I +L + VT+ E + LD + I+GV
Sbjct: 98 ADQNVWNICA---NKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQCPDDTQVIIGVGG 154
Query: 115 --SLAVAKAGAAKKGVPL 130
++ AK A +P
Sbjct: 155 GKTMDSAKYIAHSMNLPS 172
>1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region;
aldose_1_epimerase, sugar metabolism, predicted,
structural genomics; 2.00A {Saccharomyces cerevisiae}
Length = 342
Score = 27.2 bits (61), Expect = 7.8
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 158 HAGNKLAMQEFMILPTGKLRRVA-SSFLLREAMKIGSEV--YHH 198
+ L + E +LPTGK+ ++F + + + +
Sbjct: 198 CSNKSLEVTEGALLPTGKIIERNIATFDSTKPTVLHEDTPVFDC 241
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.376
Gapped
Lambda K H
0.267 0.0650 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,919,677
Number of extensions: 312982
Number of successful extensions: 618
Number of sequences better than 10.0: 1
Number of HSP's gapped: 571
Number of HSP's successfully gapped: 36
Length of query: 315
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 222
Effective length of database: 4,105,140
Effective search space: 911341080
Effective search space used: 911341080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)