RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5700
(315 letters)
>d2akza2 d.54.1.1 (A:1-139) Enolase {Human (Homo sapiens), gamma
isoform [TaxId: 9606]}
Length = 139
Score = 195 bits (497), Expect = 1e-63
Identities = 99/138 (71%), Positives = 113/138 (81%)
Query: 3 ISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGKGV 62
I KI AR+I DSRGNPTVEVDL T GLFRAAVPSGASTGIYEALELRD DK Y GKGV
Sbjct: 2 IEKIWAREILDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDGDKQRYLGKGV 61
Query: 63 TKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAG 122
KAV IN+ IAPAL+ V +Q+++D M++LDGTENKSKFGANAILGVSLAV KAG
Sbjct: 62 LKAVDHINSTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAG 121
Query: 123 AAKKGVPLYKHLADLAGN 140
AA++ +PLY+H+A LAGN
Sbjct: 122 AAERELPLYRHIAQLAGN 139
Score = 102 bits (256), Expect = 1e-27
Identities = 59/78 (75%), Positives = 62/78 (79%)
Query: 223 ISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGKGV 282
I KI AR+I DSRGNPTVEVDL T GLFRAAVPSGASTGIYEALELRD DK Y GKGV
Sbjct: 2 IEKIWAREILDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDGDKQRYLGKGV 61
Query: 283 TKAVGFINNDIAPALLKE 300
KAV IN+ IAPAL+
Sbjct: 62 LKAVDHINSTIAPALISS 79
>d2al1a2 d.54.1.1 (A:1-141) Enolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 141
Score = 187 bits (475), Expect = 3e-60
Identities = 88/138 (63%), Positives = 114/138 (82%)
Query: 3 ISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGKGV 62
+SK++AR ++DSRGNPTVEV+LTTE G+FR+ VPSGASTG++EALE+RD DK+ + GKGV
Sbjct: 2 VSKVYARSVYDSRGNPTVEVELTTEKGVFRSIVPSGASTGVHEALEMRDGDKSKWMGKGV 61
Query: 63 TKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAG 122
AV +N+ IAPA +K + +V QK +D+F+I LDGT NKSK GANAILGVSLA ++A
Sbjct: 62 LHAVKNVNDVIAPAFVKANIDVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRAA 121
Query: 123 AAKKGVPLYKHLADLAGN 140
AA+K VPLYKHLADL+ +
Sbjct: 122 AAEKNVPLYKHLADLSKS 139
Score = 99.3 bits (247), Expect = 2e-26
Identities = 49/77 (63%), Positives = 65/77 (84%)
Query: 223 ISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGKGV 282
+SK++AR ++DSRGNPTVEV+LTTE G+FR+ VPSGASTG++EALE+RD DK+ + GKGV
Sbjct: 2 VSKVYARSVYDSRGNPTVEVELTTEKGVFRSIVPSGASTGVHEALEMRDGDKSKWMGKGV 61
Query: 283 TKAVGFINNDIAPALLK 299
AV +N+ IAPA +K
Sbjct: 62 LHAVKNVNDVIAPAFVK 78
>d2ptza2 d.54.1.1 (A:0-138) Enolase {Trypanosoma brucei [TaxId:
5691]}
Length = 139
Score = 179 bits (454), Expect = 4e-57
Identities = 85/139 (61%), Positives = 107/139 (76%), Gaps = 2/139 (1%)
Query: 1 MPISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGK 60
M I K+H R++ DSRGNPTVEV++TTE G+FR+AVPSGASTG+YEA ELRD DK Y GK
Sbjct: 2 MTIQKVHGREVLDSRGNPTVEVEVTTEKGVFRSAVPSGASTGVYEACELRDGDKKRYVGK 61
Query: 61 GVTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAK 120
G +AV +N I PAL+ + +Q+E+D M++LDGT NK K GANAILG S+A++K
Sbjct: 62 GCLQAVKNVNEVIGPALIGR--DELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISK 119
Query: 121 AGAAKKGVPLYKHLADLAG 139
A AA KGVPLY++LA LAG
Sbjct: 120 AAAAAKGVPLYRYLASLAG 138
Score = 100 bits (249), Expect = 1e-26
Identities = 50/77 (64%), Positives = 60/77 (77%)
Query: 221 MPISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGK 280
M I K+H R++ DSRGNPTVEV++TTE G+FR+AVPSGASTG+YEA ELRD DK Y GK
Sbjct: 2 MTIQKVHGREVLDSRGNPTVEVEVTTEKGVFRSAVPSGASTGVYEACELRDGDKKRYVGK 61
Query: 281 GVTKAVGFINNDIAPAL 297
G +AV +N I PAL
Sbjct: 62 GCLQAVKNVNEVIGPAL 78
>d1pdza2 d.54.1.1 (A:1-139) Enolase {European lobster (Homarus
vulgaris) [TaxId: 6707]}
Length = 139
Score = 171 bits (434), Expect = 4e-54
Identities = 95/136 (69%), Positives = 112/136 (82%)
Query: 3 ISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGKGV 62
I+K+ AR IFDSRGNPTVEVDL T GLFRAAVPSGASTG++EALE+RD DK+ YHGK V
Sbjct: 2 ITKVFARTIFDSRGNPTVEVDLYTSKGLFRAAVPSGASTGVHEALEMRDGDKSKYHGKSV 61
Query: 63 TKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAG 122
AV +N+ I P ++K +VTQQKE DEFM KLDGTENKS GANAILGVSLA+ KAG
Sbjct: 62 FNAVKNVNDVIVPEIIKSGLKVTQQKECDEFMCKLDGTENKSSLGANAILGVSLAICKAG 121
Query: 123 AAKKGVPLYKHLADLA 138
AA+ G+PLY+H+A+LA
Sbjct: 122 AAELGIPLYRHIANLA 137
Score = 97.4 bits (242), Expect = 1e-25
Identities = 52/92 (56%), Positives = 64/92 (69%)
Query: 223 ISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGKGV 282
I+K+ AR IFDSRGNPTVEVDL T GLFRAAVPSGASTG++EALE+RD DK+ YHGK V
Sbjct: 2 ITKVFARTIFDSRGNPTVEVDLYTSKGLFRAAVPSGASTGVHEALEMRDGDKSKYHGKSV 61
Query: 283 TKAVGFINNDIAPALLKEVGTSNNFSSNNFDL 314
AV +N+ I P ++K + +
Sbjct: 62 FNAVKNVNDVIVPEIIKSGLKVTQQKECDEFM 93
>d2fyma2 d.54.1.1 (A:1-139) Enolase {Escherichia coli [TaxId: 562]}
Length = 139
Score = 166 bits (422), Expect = 3e-52
Identities = 86/138 (62%), Positives = 100/138 (72%), Gaps = 3/138 (2%)
Query: 3 ISKIHARQIFDSRGNPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKG 61
I KI R+I DSRGNPTVE ++ E G AA PSGASTG EALELRD DK+ + GKG
Sbjct: 3 IVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKG 62
Query: 62 VTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKA 121
VTKAV +N IA AL+ + + Q ID+ MI LDGTENKSKFGANAIL VSLA AKA
Sbjct: 63 VTKAVAAVNGPIAQALIGKDAK--DQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKA 120
Query: 122 GAAKKGVPLYKHLADLAG 139
AA KG+PLY+H+A+L G
Sbjct: 121 AAAAKGMPLYEHIAELNG 138
Score = 92.3 bits (229), Expect = 1e-23
Identities = 47/77 (61%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
Query: 223 ISKIHARQIFDSRGNPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKG 281
I KI R+I DSRGNPTVE ++ E G AA PSGASTG EALELRD DK+ + GKG
Sbjct: 3 IVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKG 62
Query: 282 VTKAVGFINNDIAPALL 298
VTKAV +N IA AL+
Sbjct: 63 VTKAVAAVNGPIAQALI 79
>d1w6ta2 d.54.1.1 (A:1-137) Enolase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 137
Score = 160 bits (406), Expect = 7e-50
Identities = 74/133 (55%), Positives = 93/133 (69%), Gaps = 3/133 (2%)
Query: 3 ISKIHARQIFDSRGNPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKG 61
I+ ++AR++ DSRGNPT+EV++ TE G F R VPSGASTG +EA+ELRD DK+ Y G G
Sbjct: 4 ITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRYGGLG 63
Query: 62 VTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKA 121
KAV +NN IA A++ Q+ ID MI LDGT NK K GANAILGVS+AVA+A
Sbjct: 64 TQKAVDNVNNIIAEAIIGYDV--RDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARA 121
Query: 122 GAAKKGVPLYKHL 134
A +PLY +L
Sbjct: 122 AADYLEIPLYSYL 134
Score = 97.7 bits (243), Expect = 7e-26
Identities = 44/76 (57%), Positives = 57/76 (75%), Gaps = 1/76 (1%)
Query: 223 ISKIHARQIFDSRGNPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKG 281
I+ ++AR++ DSRGNPT+EV++ TE G F R VPSGASTG +EA+ELRD DK+ Y G G
Sbjct: 4 ITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRYGGLG 63
Query: 282 VTKAVGFINNDIAPAL 297
KAV +NN IA A+
Sbjct: 64 TQKAVDNVNNIIAEAI 79
>d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma
isoform [TaxId: 9606]}
Length = 294
Score = 103 bits (257), Expect = 3e-26
Identities = 46/63 (73%), Positives = 52/63 (82%), Gaps = 7/63 (11%)
Query: 141 SNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGKLRRVASSFLLREAMKIGSEVYHHLK 200
S++ILPVPAFNVINGGSHAGNKLAMQEFMILP G A SF R+AM++G+EVYH LK
Sbjct: 1 SDLILPVPAFNVINGGSHAGNKLAMQEFMILPVG-----AESF--RDAMRLGAEVYHTLK 53
Query: 201 KVI 203
VI
Sbjct: 54 GVI 56
>d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId:
5691]}
Length = 291
Score = 101 bits (252), Expect = 1e-25
Identities = 35/63 (55%), Positives = 42/63 (66%), Gaps = 7/63 (11%)
Query: 142 NIILPVPAFNVINGGSHAGNKLAMQEFMILPTGKLRRVASSFLLREAMKIGSEVYHHLKK 201
+ LPVP FNVINGG HAGN L QEFMI P A+SF EA+++GSEVYH L+
Sbjct: 2 ELRLPVPCFNVINGGKHAGNALPFQEFMIAPVK-----ATSF--SEALRMGSEVYHSLRG 54
Query: 202 VIN 204
+I
Sbjct: 55 IIK 57
>d2al1a1 c.1.11.1 (A:142-436) Enolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 295
Score = 100 bits (250), Expect = 3e-25
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 7/64 (10%)
Query: 141 SNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGKLRRVASSFLLREAMKIGSEVYHHLK 200
S +LPVP NV+NGGSHAG LA+QEFMI PTG A +F EA++IGSEVYH+LK
Sbjct: 1 SPYVLPVPFLNVLNGGSHAGGALALQEFMIAPTG-----AKTF--AEALRIGSEVYHNLK 53
Query: 201 KVIN 204
+
Sbjct: 54 SLTK 57
>d1w6ta1 c.1.11.1 (A:138-433) Enolase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 296
Score = 99.6 bits (248), Expect = 7e-25
Identities = 30/65 (46%), Positives = 44/65 (67%), Gaps = 8/65 (12%)
Query: 140 NSNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGKLRRVASSFLLREAMKIGSEVYHHL 199
N+ + LP P N+INGGSH+ +A QEFMILP G A +F +EA++ G+E++H L
Sbjct: 1 NTKV-LPTPMMNIINGGSHSDAPIAFQEFMILPVG-----APTF--KEALRYGAEIFHAL 52
Query: 200 KKVIN 204
KK++
Sbjct: 53 KKILK 57
>d2fyma1 c.1.11.1 (A:140-431) Enolase {Escherichia coli [TaxId:
562]}
Length = 292
Score = 97.0 bits (241), Expect = 5e-24
Identities = 30/60 (50%), Positives = 41/60 (68%), Gaps = 7/60 (11%)
Query: 145 LPVPAFNVINGGSHAGNKLAMQEFMILPTGKLRRVASSFLLREAMKIGSEVYHHLKKVIN 204
+PVP N+INGG HA N + +QEFMI P G A + +EA+++GSEV+HHL KV+
Sbjct: 6 MPVPMMNIINGGEHADNNVDIQEFMIQPVG-----AKTV--KEAIRMGSEVFHHLAKVLK 58
>d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter
amalonaticus [TaxId: 35703]}
Length = 251
Score = 36.5 bits (84), Expect = 0.002
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 5/30 (16%)
Query: 143 IILPVPAFNVINGGSHAGNKLAMQEFMILP 172
+ +P F G ++ + MIL
Sbjct: 3 VPEAIPLF-----GQSGDDRYIAVDKMILK 27
>g1dy9.1 b.47.1.3 (A:,C:) NS3 protease {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 187
Score = 28.1 bits (63), Expect = 0.99
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 19/70 (27%)
Query: 6 IHARQIFDSRGNPTVEVDLTTELGLFRAA------VPSGASTGIYEALELRDNDKAHYHG 59
I R RG+ + + + + PSG GI+ +A
Sbjct: 114 IPVR----RRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHVVGIF---------RAAVCT 160
Query: 60 KGVTKAVGFI 69
+GV KAV FI
Sbjct: 161 RGVAKAVDFI 170
Score = 28.1 bits (63), Expect = 0.99
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 19/70 (27%)
Query: 226 IHARQIFDSRGNPTVEVDLTTELGLFRAA------VPSGASTGIYEALELRDNDKAHYHG 279
I R RG+ + + + + PSG GI+ +A
Sbjct: 114 IPVR----RRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHVVGIF---------RAAVCT 160
Query: 280 KGVTKAVGFI 289
+GV KAV FI
Sbjct: 161 RGVAKAVDFI 170
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Yeast (Hansenula saturnus) [TaxId: 4906]}
Length = 341
Score = 25.8 bits (55), Expect = 6.9
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 129 PLYK--HLADLAGNSNIILPVPAFNVINGGSHAGNKLAMQEFMIL 171
P+ L+ G+ + + +G + GNKL E+++
Sbjct: 17 PISNLNRLSQHLGSKVNVY-AKREDCNSGLAFGGNKLRKLEYIVP 60
>d1y0ba1 c.61.1.1 (A:1-191) Xanthine phosphoribosyltransferase
{Bacillus subtilis [TaxId: 1423]}
Length = 191
Score = 25.3 bits (55), Expect = 7.6
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 265 EALELRDNDKAHYHGKGVTKAVGFINNDIAPALLKEVG 302
EAL+ + ++ V K F+N+ I P L++ +G
Sbjct: 2 EALKRKIEEEGVVLSDQVLKVDSFLNHQIDPLLMQRIG 39
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.376
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,137,403
Number of extensions: 51919
Number of successful extensions: 199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 26
Length of query: 315
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,240,546
Effective search space: 285325580
Effective search space used: 285325580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)