BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5701
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 164 bits (414), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 78/106 (73%), Positives = 93/106 (87%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGK 67
+A ETHGHVGADLA+LCSEAALQ IR+KMDLIDLED+ IDAE++ SLAVTM++FR+A+ +
Sbjct: 399 VANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ 458
Query: 68 SSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVL 113
S+PSALRET+VEVP +TWEDIGGLE VKRELQELVQ + P K L
Sbjct: 459 SNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFL 504
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 164 bits (414), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 78/106 (73%), Positives = 93/106 (87%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGK 67
+A ETHGHVGADLA+LCSEAALQ IR+KMDLIDLED+ IDAE++ SLAVTM++FR+A+ +
Sbjct: 399 VANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ 458
Query: 68 SSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVL 113
S+PSALRET+VEVP +TWEDIGGLE VKRELQELVQ + P K L
Sbjct: 459 SNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFL 504
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 139 bits (349), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 63/83 (75%), Positives = 77/83 (92%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGK 67
+A ETHGHVGADLA+LCSEAALQ IR+KMDLIDLED+ IDAE++ SLAVTM++FR+A+ +
Sbjct: 399 VANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ 458
Query: 68 SSPSALRETIVEVPNITWEDIGG 90
S+PSALRET+VEVP +TWEDIGG
Sbjct: 459 SNPSALRETVVEVPQVTWEDIGG 481
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 139 bits (349), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 63/83 (75%), Positives = 77/83 (92%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGK 67
+A ETHGHVGADLA+LCSEAALQ IR+KMDLIDLED+ IDAE++ SLAVTM++FR+A+ +
Sbjct: 399 VANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ 458
Query: 68 SSPSALRETIVEVPNITWEDIGG 90
S+PSALRET+VEVP +TWEDIGG
Sbjct: 459 SNPSALRETVVEVPQVTWEDIGG 481
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 139 bits (349), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 63/83 (75%), Positives = 77/83 (92%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGK 67
+A ETHGHVGADLA+LCSEAALQ IR+KMDLIDLED+ IDAE++ SLAVTM++FR+A+ +
Sbjct: 399 VANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ 458
Query: 68 SSPSALRETIVEVPNITWEDIGG 90
S+PSALRET+VEVP +TWEDIGG
Sbjct: 459 SNPSALRETVVEVPQVTWEDIGG 481
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 95.9 bits (237), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 44/60 (73%), Positives = 55/60 (91%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGK 67
+A ETHGHVGADLA+LCSEAALQ IR+KMDLIDLED+ IDAE++ SLAVTM++FR+A+ +
Sbjct: 399 VANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ 458
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 34/42 (80%)
Query: 72 ALRETIVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVL 113
ALRET+VEVP +TWEDIGGLE VKRELQELVQ + P K L
Sbjct: 1 ALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFL 42
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 74 RETIVEVPNITWEDIGGLEGVKRELQELV 102
R ++ E PN+ WED+ GLEG K L+E V
Sbjct: 15 RGSLSEKPNVKWEDVAGLEGAKEALKEAV 43
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 3 YYNLGIAAETHGHVGADLASLCSEAALQQIRE 34
Y LG A T G+ G+D+A + +A +Q IR+
Sbjct: 218 YRTLG--AMTEGYSGSDIAVVVKDALMQPIRK 247
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMDLIDLED 43
IA T G VGA+L ++C+EA + IRE D + ++D
Sbjct: 215 IAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDD 250
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 79 EVPNITWEDIGGLEGVKRELQELVQPSLWSP 109
E PN+ +EDIGGLE +E++E+V+ L P
Sbjct: 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHP 40
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 77 IVEVPNITWEDIGGLEGVKRELQELV 102
++E PN+ W D+ GLEG K L+E V
Sbjct: 125 VIERPNVKWSDVAGLEGAKEALKEAV 150
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 77 IVEVPNITWEDIGGLEGVKRELQELV 102
+ E PN+ WED+ GLEG K L+E V
Sbjct: 42 LSEKPNVKWEDVAGLEGAKEALKEAV 67
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 3 YYNLGIAAETHGHVGADLASLCSEAALQQIRE 34
Y LG A T G+ G+D+A + +A +Q IR+
Sbjct: 242 YRTLG--AMTEGYSGSDIAVVVKDALMQPIRK 271
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 77 IVEVPNITWEDIGGLEGVKRELQELV 102
++E PN+ W D+ GLEG K L+E V
Sbjct: 3 VIERPNVKWSDVAGLEGAKEALKEAV 28
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 79 EVPNITWEDIGGLEGVKRELQELV 102
E PN+ WED+ GLEG K L+E V
Sbjct: 11 EKPNVKWEDVAGLEGAKEALKEAV 34
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 3 YYNLGIAAETHGHVGADLASLCSEAALQQIRE 34
Y LG A T G+ G+D+A + +A +Q IR+
Sbjct: 209 YRTLG--AMTEGYSGSDIAVVVKDALMQPIRK 238
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 77 IVEVPNITWEDIGGLEGVKRELQELV 102
+ E PN+ WED+ GLEG K L+E V
Sbjct: 27 LSEKPNVKWEDVAGLEGAKEALKEAV 52
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 3 YYNLGIAAETHGHVGADLASLCSEAALQQIRE 34
Y LG A T G+ G+D+A + +A +Q IR+
Sbjct: 227 YRTLG--AMTEGYSGSDIAVVVKDALMQPIRK 256
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 19/36 (52%), Positives = 23/36 (63%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMDLIDLED 43
IA T G VGADL +L +EAAL RE D I ++D
Sbjct: 213 IAKRTPGFVGADLENLVNEAALLAAREGRDKITMKD 248
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 19/36 (52%), Positives = 23/36 (63%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMDLIDLED 43
IA T G VGADL +L +EAAL RE D I ++D
Sbjct: 213 IAKRTPGFVGADLENLVNEAALLAAREGRDKITMKD 248
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 70 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSK 111
PS T+ E P++T+ D+GG + +L+E+V+ L SP +
Sbjct: 193 PSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPER 234
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 3 YYNLGIAAETHGHVGADLASLCSEAALQQIRE 34
+Y+ +A T G GAD+A++C+EAAL RE
Sbjct: 201 FYSQRLAELTPGFSGADIANICNEAALHAARE 232
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 80 VPNITWEDIGGLEGVKRELQELVQPSLWSPSK 111
VPN+TW DIG LE ++ EL + + +P +
Sbjct: 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQ 35
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 17/60 (28%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGK 67
+A + +G GAD+ +C+EA + +RE+ + VT E+F A+GK
Sbjct: 346 VAEKMNGCSGADVKGVCTEAGMYALRER-----------------RIHVTQEDFELAVGK 388
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 6 LGIAAETHGHVGADLASLCSEAALQQIR-EKMDLIDLEDDQIDAEILASLAVTMENFRYA 64
L + E +VG + + + L +++ E ++D+ D ++ AS V + + Y
Sbjct: 62 LRLLQEPGSYVGEVIKIVSDKKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYM 121
Query: 65 M-----GKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQPSLWSP 109
+ K+ P + +VP+ T++ +GGL +E++E+++ + P
Sbjct: 122 LHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHP 171
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDA-EILASLAVTMENFRYAMG 66
+A T G+ G+DL +L +AAL+ IRE L +Q+ +I A A+T ++F ++
Sbjct: 217 LAKITDGYSGSDLTALAKDAALEPIRE------LNVEQVKCLDISAMRAITEQDFHSSLK 270
Query: 67 K 67
+
Sbjct: 271 R 271
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 5/34 (14%)
Query: 79 EVPNITWEDIGGLEGVKRELQE-----LVQPSLW 107
E P++T+ D+GGL+ K+E++E LVQ L+
Sbjct: 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLY 198
>pdb|4EZC|A Chain A, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus
pdb|4EZC|B Chain B, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus
pdb|4EZC|C Chain C, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus
pdb|4EZD|A Chain A, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus Bound To Selenourea
pdb|4EZD|B Chain B, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus Bound To Selenourea
pdb|4EZD|C Chain C, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus Bound To Selenourea
Length = 384
Score = 30.0 bits (66), Expect = 0.36, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 70 PSALRETIVEVPNITWEDIGGLEGVK 95
PS L + VPN+TW D+ L+ +K
Sbjct: 194 PSTLITPVTSVPNVTWPDLSALQLLK 219
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIR--EKMDLIDLEDDQI 46
I ++ GAD+ LC EA+L IR + D+ + DQ+
Sbjct: 279 IVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQV 319
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 81 PNITWEDIGGLEGVKRELQELV 102
P + WEDI G+E K ++E+V
Sbjct: 79 PPVNWEDIAGVEFAKATIKEIV 100
>pdb|4GOX|A Chain A, Sulfotransferase Domain From The Synechococcus Pcc 7002
Olefin Synthase
Length = 313
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 67 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMN 115
+ +P AL E+I N D+G G R LQ + + + P KVL N
Sbjct: 178 QQNPYALAESIWRTSNRNILDLGRTVGADRYLQVIYEDLVRDPRKVLTN 226
>pdb|3TU3|B Chain B, 1.92 Angstrom Resolution Crystal Structure Of The
Full-Length Spcu In Complex With Full-Length Exou From
The Type Iii Secretion System Of Pseudomonas Aeruginosa
Length = 711
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 14 GHVGADLASLCSEAALQQIREKMDLIDLEDD---------QIDAEILASLAVTMEN 60
G A LAS S AA + + +KMDLI L D I +EI ASL + N
Sbjct: 169 GITAALLASGMSPAAFKTLSDKMDLISLLDSSNKKLKLFQHISSEIGASLKKGLGN 224
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIR 33
IA T G GADLA+L +EAAL R
Sbjct: 209 IARGTPGFSGADLANLVNEAALFAAR 234
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIRE 34
+A T G+ G+DL +L +AAL IRE
Sbjct: 310 LARMTDGYSGSDLTALAKDAALGPIRE 336
>pdb|4H3V|A Chain A, Crystal Structure Of Oxidoreductase Domain Protein From
Kribbella Flavida
pdb|4H3V|B Chain B, Crystal Structure Of Oxidoreductase Domain Protein From
Kribbella Flavida
Length = 390
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 93 GVKREL-QELVQPSL---WSPSKVLMNEHAMTHQVFD 125
G +R L E V P + W P +L EH THQV D
Sbjct: 312 GFRRILATEPVHPYVAGWWPPGHLLGYEHGFTHQVVD 348
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 57 TMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQPSLWSP 109
T+ R ++ P T E IT++ IGGL REL+E+++ L +P
Sbjct: 152 TLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNP 204
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 17 GADLASLCSEAALQQIREKMDLIDLED 43
GAD+ ++C+EA L +RE+ + ED
Sbjct: 389 GADIQAMCTEAGLLALRERRMQVTAED 415
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 81 PNITWEDIGGLEGVKRELQELVQPSLWSP 109
P ++ DIGGLE +E++E V+ L P
Sbjct: 177 PTESYSDIGGLESQIQEIKESVELPLTHP 205
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 19 DLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRETIV 78
DL + E QQ+R++++L+ ++ D E+ + +T F A+G + + +V
Sbjct: 214 DLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLV 273
Query: 79 E 79
E
Sbjct: 274 E 274
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 19 DLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRETIV 78
DL + E QQ+R++++L+ ++ D E+ + +T F A+G + + +V
Sbjct: 214 DLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLV 273
Query: 79 E 79
E
Sbjct: 274 E 274
>pdb|3MHV|C Chain C, Crystal Structure Of Vps4 And Vta1
Length = 117
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 3 YYNLGIAAETHGHVGADLASLCSEAALQQIRE 34
Y LG A T G+ G+D+A + +A +Q IR+
Sbjct: 28 YRTLG--AMTEGYSGSDIAVVVKDALMQPIRK 57
>pdb|4A25|A Chain A, X-ray Structure Dps From Kineococcus Radiotolerans In
Complex With Mn (ii) Ions.
pdb|4A25|B Chain B, X-ray Structure Dps From Kineococcus Radiotolerans In
Complex With Mn (ii) Ions.
pdb|4A25|C Chain C, X-ray Structure Dps From Kineococcus Radiotolerans In
Complex With Mn (ii) Ions.
pdb|4A25|D Chain D, X-ray Structure Dps From Kineococcus Radiotolerans In
Complex With Mn (ii) Ions
Length = 169
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 8 IAAETHGHVGADL--ASLCSEAALQQIREKMDLIDLEDDQIDAE------ILASLAVTME 59
+AA G VG D C EA + +R +D I D IDAE +L ++ + +E
Sbjct: 94 VAASRIGDVGPDEIDTRACVEAIVALVRHTVDTIRRVHDPIDAEDPASADLLHAITLELE 153
Query: 60 NFRYAMGKSSPSALRE 75
+ +G + S R
Sbjct: 154 KQAWMIGSENRSPRRR 169
>pdb|3CJD|A Chain A, Crystal Structure Of Putative Tetr Transcriptional
Regulator (Yp_510936.1) From Jannaschia Sp. Ccs1 At
1.79 A Resolution
pdb|3CJD|B Chain B, Crystal Structure Of Putative Tetr Transcriptional
Regulator (Yp_510936.1) From Jannaschia Sp. Ccs1 At
1.79 A Resolution
Length = 198
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 26 EAALQQIREKMDLIDLEDDQIDAEILASL 54
EA +REK LIDL + QI+AE LASL
Sbjct: 7 EARKAALREK--LIDLAEAQIEAEGLASL 33
>pdb|3HMQ|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Nad
Synthetase (Nade) From Salmonella Typhimurium Lt2 In
Complex With Nad(+)
Length = 275
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 20 LASL-CSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENF-RYAMGKSSPSALRETI 77
LA+L C E + +K+ DLEDD+ A+L VT +N Y GK+ A+ +TI
Sbjct: 196 LAALGCPE----HLYKKVPTADLEDDRPSLPDEAALGVTYDNIDDYLEGKTLDPAIAKTI 251
>pdb|1WXE|A Chain A, E.Coli Nad Synthetase, Amp
pdb|1WXF|A Chain A, E.Coli Nad Synthetase
pdb|1WXG|A Chain A, E.Coli Nad Synthetase, Dnd
pdb|1WXH|A Chain A, E.coli Nad Synthetase, Nad
pdb|1WXI|A Chain A, E.Coli Nad Synthetase, Amp.Pp
Length = 275
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 23 LCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENF-RYAMGKSSPSALRETI 77
L + A + + +K DLEDD+ +L VT +N Y GK+ P + TI
Sbjct: 196 LAALACPEHLYKKAPTADLEDDRPSLPDEVALGVTYDNIDDYLEGKNVPQQVARTI 251
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,576,588
Number of Sequences: 62578
Number of extensions: 123055
Number of successful extensions: 379
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 314
Number of HSP's gapped (non-prelim): 71
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)