Query psy5701
Match_columns 125
No_of_seqs 187 out of 1451
Neff 8.9
Searched_HMMs 46136
Date Sat Aug 17 00:27:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5701.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5701hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733|consensus 100.0 2.3E-32 5E-37 210.7 9.4 122 3-124 383-549 (802)
2 KOG0730|consensus 100.0 1.3E-30 2.9E-35 202.1 8.7 99 4-124 374-472 (693)
3 TIGR01243 CDC48 AAA family ATP 99.9 4.8E-22 1E-26 160.2 10.3 121 4-124 369-491 (733)
4 KOG0735|consensus 99.8 4.7E-21 1E-25 150.5 9.0 110 2-124 595-705 (952)
5 KOG0736|consensus 99.8 2E-20 4.4E-25 147.9 6.4 120 4-124 586-709 (953)
6 COG0464 SpoVK ATPases of the A 99.7 1E-17 2.2E-22 130.1 9.4 108 4-124 173-280 (494)
7 COG1222 RPT1 ATP-dependent 26S 99.6 2.2E-16 4.8E-21 116.5 4.0 49 76-124 141-189 (406)
8 KOG0738|consensus 99.4 9.8E-14 2.1E-18 103.7 5.1 79 4-83 405-484 (491)
9 KOG0729|consensus 99.3 7.9E-13 1.7E-17 95.3 3.8 58 67-124 158-215 (435)
10 KOG0730|consensus 99.3 6E-12 1.3E-16 99.0 4.8 63 4-81 625-687 (693)
11 KOG0727|consensus 99.2 5.3E-12 1.1E-16 90.5 3.3 47 78-124 147-193 (408)
12 KOG0726|consensus 99.2 6.1E-12 1.3E-16 91.6 3.4 47 78-124 177-223 (440)
13 KOG0728|consensus 99.2 5.6E-12 1.2E-16 90.3 3.2 53 72-124 133-185 (404)
14 KOG0652|consensus 99.2 2.1E-11 4.6E-16 87.8 3.7 47 78-124 163-209 (424)
15 PTZ00454 26S protease regulato 99.2 2.2E-11 4.8E-16 92.6 3.9 48 77-124 136-183 (398)
16 KOG0733|consensus 99.1 4.2E-11 9E-16 94.0 4.4 76 4-80 704-781 (802)
17 KOG0732|consensus 99.1 3.1E-11 6.7E-16 99.4 2.6 112 4-125 193-304 (1080)
18 TIGR01243 CDC48 AAA family ATP 99.1 1.9E-10 4.1E-15 93.4 4.8 82 3-84 644-726 (733)
19 COG1222 RPT1 ATP-dependent 26S 99.0 4.4E-10 9.5E-15 83.6 5.1 50 4-70 345-394 (406)
20 PRK03992 proteasome-activating 99.0 2.4E-10 5.2E-15 86.8 2.9 69 56-124 96-169 (389)
21 KOG0737|consensus 99.0 7.5E-10 1.6E-14 82.4 4.4 71 3-74 283-365 (386)
22 KOG0739|consensus 99.0 1.6E-10 3.4E-15 84.5 0.6 77 3-79 322-427 (439)
23 KOG0736|consensus 98.9 6.7E-10 1.5E-14 89.1 4.1 79 4-82 867-946 (953)
24 TIGR03689 pup_AAA proteasome A 98.9 6.1E-10 1.3E-14 86.9 3.7 49 76-124 172-220 (512)
25 PTZ00361 26 proteosome regulat 98.9 1.7E-09 3.6E-14 83.2 3.6 48 77-124 174-221 (438)
26 KOG0739|consensus 98.9 5.6E-10 1.2E-14 81.7 0.7 49 75-124 122-170 (439)
27 KOG0738|consensus 98.8 1.8E-09 3.9E-14 81.2 2.9 50 74-124 200-249 (491)
28 TIGR01242 26Sp45 26S proteasom 98.8 6.2E-09 1.3E-13 78.4 3.5 48 77-124 113-160 (364)
29 PRK03992 proteasome-activating 98.7 2.1E-08 4.7E-13 76.2 5.5 55 4-75 325-379 (389)
30 KOG0737|consensus 98.7 8.4E-09 1.8E-13 76.9 2.8 44 81-124 87-131 (386)
31 PTZ00454 26S protease regulato 98.7 3.5E-08 7.6E-13 75.3 5.3 51 4-71 339-389 (398)
32 CHL00195 ycf46 Ycf46; Provisio 98.7 5E-08 1.1E-12 76.1 6.0 52 3-72 416-467 (489)
33 KOG0734|consensus 98.6 2.3E-08 5E-13 78.0 3.4 44 80-124 298-341 (752)
34 KOG0651|consensus 98.6 1.2E-08 2.6E-13 75.0 1.6 46 79-124 125-170 (388)
35 KOG0731|consensus 98.6 3.2E-08 6.9E-13 79.9 3.9 45 79-124 304-348 (774)
36 KOG0740|consensus 98.6 3.3E-08 7.2E-13 75.4 2.4 76 3-82 343-418 (428)
37 COG0464 SpoVK ATPases of the A 98.6 1.7E-07 3.6E-12 73.2 6.2 55 3-73 434-488 (494)
38 KOG0741|consensus 98.5 1.6E-07 3.4E-12 73.4 5.8 67 4-72 428-494 (744)
39 PTZ00361 26 proteosome regulat 98.5 2.5E-07 5.4E-12 71.4 5.4 50 4-70 377-426 (438)
40 TIGR01242 26Sp45 26S proteasom 98.5 3.6E-07 7.7E-12 68.9 5.8 48 4-68 316-363 (364)
41 CHL00206 ycf2 Ycf2; Provisiona 98.4 2.7E-07 6E-12 80.3 5.2 52 3-71 1829-1880(2281)
42 CHL00195 ycf46 Ycf46; Provisio 98.4 5E-07 1.1E-11 70.6 6.3 96 4-124 166-263 (489)
43 KOG0732|consensus 98.4 3.6E-07 7.8E-12 76.0 4.5 73 3-76 461-533 (1080)
44 KOG0740|consensus 98.3 4.8E-07 1E-11 69.2 3.0 52 73-125 140-191 (428)
45 KOG0731|consensus 98.3 8.8E-07 1.9E-11 71.8 4.5 51 4-71 506-556 (774)
46 TIGR01241 FtsH_fam ATP-depende 98.3 8.6E-07 1.9E-11 69.4 4.3 51 4-71 248-298 (495)
47 PRK10733 hflB ATP-dependent me 98.3 1.8E-06 3.8E-11 69.7 5.5 52 4-72 345-396 (644)
48 TIGR01241 FtsH_fam ATP-depende 98.2 1.8E-06 3.9E-11 67.6 3.9 46 78-124 47-92 (495)
49 KOG0728|consensus 98.1 2.4E-06 5.2E-11 61.7 3.7 48 4-68 341-388 (404)
50 COG0465 HflB ATP-dependent Zn 98.0 3.4E-06 7.4E-11 67.0 3.0 48 4-68 343-390 (596)
51 CHL00176 ftsH cell division pr 98.0 9.4E-06 2E-10 65.4 5.3 48 4-68 376-423 (638)
52 COG0465 HflB ATP-dependent Zn 98.0 4.4E-06 9.5E-11 66.4 3.1 45 79-124 143-187 (596)
53 KOG0726|consensus 98.0 9.3E-06 2E-10 59.8 4.1 48 5-69 380-427 (440)
54 KOG0734|consensus 97.9 1.3E-05 2.7E-10 63.1 3.9 48 4-68 494-541 (752)
55 PF09336 Vps4_C: Vps4 C termin 97.9 2E-06 4.3E-11 49.1 -0.8 38 46-83 20-57 (62)
56 KOG0735|consensus 97.8 4.5E-05 9.8E-10 61.7 5.8 37 4-40 858-894 (952)
57 KOG0652|consensus 97.8 9.3E-06 2E-10 59.1 1.3 49 5-70 366-414 (424)
58 KOG0727|consensus 97.6 9.2E-05 2E-09 53.8 4.3 49 4-69 349-397 (408)
59 CHL00176 ftsH cell division pr 97.6 6.2E-05 1.4E-09 60.7 3.5 44 80-124 177-220 (638)
60 KOG0729|consensus 97.5 0.0002 4.3E-09 52.4 4.6 50 6-72 373-422 (435)
61 COG1223 Predicted ATPase (AAA+ 97.2 0.00073 1.6E-08 49.3 5.0 52 3-71 306-358 (368)
62 CHL00181 cbbX CbbX; Provisiona 95.6 0.012 2.7E-07 43.2 2.9 36 85-121 22-57 (287)
63 KOG0651|consensus 95.2 0.0083 1.8E-07 44.8 1.0 48 4-68 326-373 (388)
64 TIGR03689 pup_AAA proteasome A 95.2 0.04 8.6E-07 43.7 4.9 67 11-92 434-501 (512)
65 PRK10733 hflB ATP-dependent me 95.1 0.02 4.4E-07 46.6 3.1 43 81-124 147-189 (644)
66 TIGR02880 cbbX_cfxQ probable R 94.0 0.059 1.3E-06 39.5 3.1 33 87-120 23-55 (284)
67 COG1223 Predicted ATPase (AAA+ 93.3 0.074 1.6E-06 39.1 2.5 42 79-124 114-155 (368)
68 TIGR02881 spore_V_K stage V sp 89.2 0.44 9.6E-06 34.3 3.1 37 86-123 6-42 (261)
69 KOG0742|consensus 87.7 0.55 1.2E-05 36.8 2.8 23 4-26 565-587 (630)
70 TIGR03015 pepcterm_ATPase puta 84.0 3.2 6.9E-05 29.6 5.2 48 4-69 220-267 (269)
71 PRK00411 cdc6 cell division co 78.3 2.2 4.7E-05 32.3 2.7 19 55-73 269-287 (394)
72 KOG0741|consensus 75.9 3.1 6.8E-05 33.8 3.0 47 78-124 211-260 (744)
73 COG5248 TAF19 Transcription in 66.8 6.1 0.00013 25.0 2.3 41 9-68 33-73 (126)
74 PRK07940 DNA polymerase III su 63.0 4.2 9.2E-05 31.4 1.3 27 84-110 3-29 (394)
75 PF02969 TAF: TATA box binding 62.5 20 0.00044 20.5 3.8 13 54-66 54-66 (66)
76 PF05621 TniB: Bacterial TniB 61.4 27 0.00058 26.2 5.2 50 6-74 245-294 (302)
77 CHL00206 ycf2 Ycf2; Provisiona 58.7 4.8 0.00011 37.3 1.1 22 103-124 1613-1634(2281)
78 TIGR02902 spore_lonB ATP-depen 57.0 26 0.00056 28.2 4.8 42 6-66 289-330 (531)
79 TIGR02928 orc1/cdc6 family rep 56.2 20 0.00043 26.8 3.9 49 5-71 229-277 (365)
80 COG1219 ClpX ATP-dependent pro 55.7 31 0.00067 26.5 4.7 16 14-29 137-152 (408)
81 PF15357 SEEK1: Psoriasis susc 53.9 4.2 9.2E-05 25.8 -0.0 19 97-115 79-97 (149)
82 COG1220 HslU ATP-dependent pro 50.8 13 0.00027 28.8 2.0 20 14-33 90-109 (444)
83 PF14666 RICTOR_M: Rapamycin-i 50.2 16 0.00035 26.1 2.4 43 58-114 3-45 (226)
84 COG1067 LonB Predicted ATP-dep 50.2 19 0.00041 29.8 3.1 40 15-71 363-402 (647)
85 PF00808 CBFD_NFYB_HMF: Histon 49.6 40 0.00086 18.7 3.6 45 16-65 21-65 (65)
86 PRK12860 transcriptional activ 49.0 11 0.00025 26.1 1.5 15 110-124 42-57 (189)
87 TIGR02639 ClpA ATP-dependent C 47.5 22 0.00048 29.7 3.2 15 54-68 415-429 (731)
88 KOG3423|consensus 47.5 35 0.00076 23.3 3.6 17 52-68 149-165 (176)
89 PRK12722 transcriptional activ 47.0 13 0.00028 25.8 1.5 14 111-124 43-57 (187)
90 cd07981 TAF12 TATA Binding Pro 46.0 34 0.00074 19.6 3.0 14 55-68 54-67 (72)
91 KOG4603|consensus 46.0 29 0.00063 23.9 3.0 16 103-118 185-200 (201)
92 COG2812 DnaX DNA polymerase II 44.4 19 0.00042 29.0 2.3 43 77-124 7-50 (515)
93 COG3196 Uncharacterized protei 44.4 15 0.00033 24.6 1.4 17 4-20 88-104 (183)
94 KOG4589|consensus 41.8 9.7 0.00021 26.8 0.3 72 5-76 141-215 (232)
95 smart00803 TAF TATA box bindin 40.9 68 0.0015 18.1 3.8 13 54-66 53-65 (65)
96 PF03691 UPF0167: Uncharacteri 40.6 16 0.00036 25.1 1.2 15 4-18 84-98 (176)
97 PRK13730 conjugal transfer pil 37.8 46 0.001 23.6 3.1 31 89-119 127-162 (212)
98 PF15061 DUF4538: Domain of un 36.6 32 0.00069 19.2 1.7 28 88-115 11-39 (58)
99 TIGR02742 TrbC_Ftype type-F co 36.6 51 0.0011 21.4 3.0 30 90-119 37-71 (130)
100 PLN00020 ribulose bisphosphate 35.8 19 0.00041 28.1 1.0 40 83-124 112-152 (413)
101 TIGR00988 hip integration host 33.8 78 0.0017 18.8 3.4 33 3-36 5-37 (94)
102 PF12703 plasmid_Toxin: Toxin 33.3 18 0.0004 20.9 0.5 15 56-70 57-71 (74)
103 PF06820 Phage_fiber_C: Putati 33.3 12 0.00027 20.8 -0.2 14 79-92 51-64 (64)
104 TIGR00635 ruvB Holliday juncti 32.0 23 0.00049 25.8 0.9 22 84-105 2-23 (305)
105 cd00591 HU_IHF Integration hos 31.9 1.1E+02 0.0023 17.7 4.6 30 4-35 5-34 (87)
106 PF04380 BMFP: Membrane fusoge 29.8 1.2E+02 0.0026 17.7 3.9 14 4-17 7-20 (79)
107 PRK08293 3-hydroxybutyryl-CoA 29.6 2.2E+02 0.0048 20.6 5.8 89 11-125 186-285 (287)
108 PF09673 TrbC_Ftype: Type-F co 29.2 70 0.0015 20.1 2.7 14 106-119 58-71 (113)
109 PF05280 FlhC: Flagellar trans 29.1 23 0.00049 24.3 0.5 9 116-124 49-57 (175)
110 PF08681 DUF1778: Protein of u 28.8 41 0.00088 19.7 1.5 32 6-37 11-42 (80)
111 PF07115 DUF1371: Protein of u 28.2 38 0.00082 21.4 1.3 13 88-100 20-32 (110)
112 cd07978 TAF13 The TATA Binding 28.0 81 0.0018 19.2 2.7 15 55-69 54-68 (92)
113 PRK00199 ihfB integration host 26.8 1.5E+02 0.0032 17.7 4.9 32 3-35 5-36 (94)
114 PF13691 Lactamase_B_4: tRNase 26.2 50 0.0011 18.6 1.5 21 69-90 43-63 (63)
115 KOG4009|consensus 26.2 45 0.00098 22.1 1.4 18 83-100 117-134 (156)
116 COG4840 Uncharacterized protei 26.1 1.4E+02 0.0029 17.2 3.2 25 4-28 43-67 (71)
117 PHA02577 2 DNA end protector p 25.3 44 0.00094 22.9 1.3 46 58-103 94-139 (181)
118 TIGR01201 HU_rel DNA-binding p 24.5 2.1E+02 0.0046 18.7 4.7 32 4-37 36-67 (145)
119 PF09524 Phg_2220_C: Conserved 24.0 1.4E+02 0.0031 17.4 3.2 22 8-29 25-46 (74)
120 PF08620 RPAP1_C: RPAP1-like, 23.4 75 0.0016 18.5 1.9 17 12-28 36-52 (73)
121 COG4371 Predicted membrane pro 23.0 1.2E+02 0.0026 22.4 3.2 31 4-34 163-193 (334)
122 TIGR02220 phg_TIGR02220 phage 22.8 97 0.0021 18.2 2.3 18 8-25 28-45 (77)
123 PF06490 FleQ: Flagellar regul 21.4 27 0.00059 21.7 -0.3 15 101-115 90-104 (109)
124 PF02269 TFIID-18kDa: Transcri 21.4 51 0.0011 20.0 1.0 18 55-72 54-71 (93)
125 PF07466 DUF1517: Protein of u 21.3 1.8E+02 0.0039 21.6 3.9 33 3-35 122-154 (289)
126 TIGR00764 lon_rel lon-related 21.2 1.6E+02 0.0034 24.3 3.9 13 54-66 377-389 (608)
127 PF12661 hEGF: Human growth fa 21.1 11 0.00024 14.3 -1.3 6 13-18 6-11 (13)
128 TIGR00987 himA integration hos 20.7 1.7E+02 0.0036 17.6 3.2 32 3-36 6-37 (96)
129 PF05952 ComX: Bacillus compet 20.7 58 0.0013 18.1 1.0 18 98-115 2-19 (57)
130 PF12431 CitT: Transcriptional 20.5 49 0.0011 15.7 0.6 6 118-123 22-27 (30)
No 1
>KOG0733|consensus
Probab=99.97 E-value=2.3e-32 Score=210.69 Aligned_cols=122 Identities=34% Similarity=0.536 Sum_probs=107.7
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCc---------c---------c---------------------
Q psy5701 3 YYNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDL---------E---------D--------------------- 43 (125)
Q Consensus 3 ~~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~---------~---------~--------------------- 43 (125)
|++..||+.|+||+||||.+||++|++.|++|.++.... + .
T Consensus 383 ~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~ 462 (802)
T KOG0733|consen 383 FDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQD 462 (802)
T ss_pred cCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHH
Confidence 678999999999999999999999999999998763210 0 0
Q ss_pred ------hhchHHhhhcccccHHHHHHHhcccCCCchhhhhcccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCC
Q psy5701 44 ------DQIDAEILASLAVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEH 117 (125)
Q Consensus 44 ------~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~~~~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi 117 (125)
+..+.+......|+.+||+.|+..++||+.++.+.++|+|+|+|||||++++.+|..+|.||+|||++|+++|+
T Consensus 463 ~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi 542 (802)
T KOG0733|consen 463 AILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGI 542 (802)
T ss_pred HHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCC
Confidence 01112445567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy5701 118 AMTHQVF 124 (125)
Q Consensus 118 ~~p~Gvl 124 (125)
.+|.|||
T Consensus 543 ~~PsGvL 549 (802)
T KOG0733|consen 543 DAPSGVL 549 (802)
T ss_pred CCCCceE
Confidence 9999998
No 2
>KOG0730|consensus
Probab=99.97 E-value=1.3e-30 Score=202.06 Aligned_cols=99 Identities=49% Similarity=0.686 Sum_probs=95.7
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCchhhhhcccCCc
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRETIVEVPNI 83 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~~~~~~~~v 83 (125)
+|..+|..|+||+||||.+||++|++.++++ ++++|..|+..++||..++.....+++
T Consensus 374 ~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~----------------------~~~~~~~A~~~i~psa~Re~~ve~p~v 431 (693)
T KOG0730|consen 374 DLEDIAVSTHGYVGADLAALCREASLQATRR----------------------TLEIFQEALMGIRPSALREILVEMPNV 431 (693)
T ss_pred hHHHHHHHccchhHHHHHHHHHHHHHHHhhh----------------------hHHHHHHHHhcCCchhhhheeccCCCC
Confidence 6889999999999999999999999999876 468999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 84 TWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 84 ~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
+|+||||++++|++|+++|+||++||+.|.++|++||||||
T Consensus 432 ~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVL 472 (693)
T KOG0730|consen 432 SWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVL 472 (693)
T ss_pred ChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEE
Confidence 99999999999999999999999999999999999999998
No 3
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.87 E-value=4.8e-22 Score=160.23 Aligned_cols=121 Identities=43% Similarity=0.578 Sum_probs=105.7
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhc--CccchhchHHhhhcccccHHHHHHHhcccCCCchhhhhcccC
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLI--DLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRETIVEVP 81 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~--~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~~~~~~~ 81 (125)
.+..+|+.|+||+|+||..||++|++.++++..... +.....++.+......++.+||..|++.++|+..++.....+
T Consensus 369 ~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~ 448 (733)
T TIGR01243 369 DLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVP 448 (733)
T ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhhcccc
Confidence 478999999999999999999999999999876532 222223333334556799999999999999999999888899
Q ss_pred CcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 82 NITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 82 ~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
+++|+||||++++|+.|++.|.||++||++|+++|+++|+|||
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giL 491 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVL 491 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEE
Confidence 9999999999999999999999999999999999999999997
No 4
>KOG0735|consensus
Probab=99.85 E-value=4.7e-21 Score=150.53 Aligned_cols=110 Identities=24% Similarity=0.275 Sum_probs=97.3
Q ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCchhhhhccc-
Q psy5701 2 MYYNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRETIVEV- 80 (125)
Q Consensus 2 ~~~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~~~~~~- 80 (125)
|.+|.-+|.+|+||+..||..++.+|.+.++...... .+..+|.++|.++|+.+.|..+|+.....
T Consensus 595 ~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~-------------~~klltke~f~ksL~~F~P~aLR~ik~~k~ 661 (952)
T KOG0735|consen 595 MDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISN-------------GPKLLTKELFEKSLKDFVPLALRGIKLVKS 661 (952)
T ss_pred hHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcc-------------CcccchHHHHHHHHHhcChHHhhhcccccc
Confidence 5577889999999999999999999999998544322 22268999999999999999999876544
Q ss_pred CCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 81 PNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 81 ~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
..++|+|||||.++|+.|+++|+||.|||.+|++++++.++|||
T Consensus 662 tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giL 705 (952)
T KOG0735|consen 662 TGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGIL 705 (952)
T ss_pred CCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceE
Confidence 45999999999999999999999999999999999999999997
No 5
>KOG0736|consensus
Probab=99.82 E-value=2e-20 Score=147.88 Aligned_cols=120 Identities=22% Similarity=0.293 Sum_probs=96.3
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCc---cchhchHHhhhcccccHHHHHHHhcccCCCchhh-hhcc
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDL---EDDQIDAEILASLAVTMENFRYAMGKSSPSALRE-TIVE 79 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~---~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~-~~~~ 79 (125)
+++.+|.+|+||+-+||.+|+..+...+..+..++.-. .......--.....++++||.+|+.+.+...+.. ..++
T Consensus 586 ~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPK 665 (953)
T KOG0736|consen 586 NLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPK 665 (953)
T ss_pred HHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCC
Confidence 67899999999999999999999877766665544210 0000000012235799999999999999887765 4578
Q ss_pred cCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 80 VPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 80 ~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
+|+|+|+||||++++|.+|+++|..||+||++|.+ |+++-+|||
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGIL 709 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGIL 709 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeE
Confidence 99999999999999999999999999999999985 999999997
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1e-17 Score=130.07 Aligned_cols=108 Identities=36% Similarity=0.497 Sum_probs=96.9
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCchhhhhcccCCc
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRETIVEVPNI 83 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~~~~~~~~v 83 (125)
.+..+|..|.||+|+|+..+|+++.+.++++.... ......++.+||.++++++.|+ ++.....+.+
T Consensus 173 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~-----------~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~v 239 (494)
T COG0464 173 TGKTLAARTVGKSGADLGALAKEAALRELRRAIDL-----------VGEYIGVTEDDFEEALKKVLPS--RGVLFEDEDV 239 (494)
T ss_pred cHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhcc-----------CcccccccHHHHHHHHHhcCcc--cccccCCCCc
Confidence 56789999999999999999999999999886300 1123468899999999999999 7778889999
Q ss_pred ccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 84 TWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 84 ~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
+|.|+||++++|+.+++.|+||++||+.|.+.|+++|+|||
T Consensus 240 ~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giL 280 (494)
T COG0464 240 TLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVL 280 (494)
T ss_pred ceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeE
Confidence 99999999999999999999999999999999999999997
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.2e-16 Score=116.54 Aligned_cols=49 Identities=31% Similarity=0.458 Sum_probs=46.5
Q ss_pred hhcccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 76 TIVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 76 ~~~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
...+.|+++|+|||||++..++|+|+|++||+|||+|+++||.||||||
T Consensus 141 ~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVL 189 (406)
T COG1222 141 EVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVL 189 (406)
T ss_pred eeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceE
Confidence 3456899999999999999999999999999999999999999999998
No 8
>KOG0738|consensus
Probab=99.45 E-value=9.8e-14 Score=103.71 Aligned_cols=79 Identities=25% Similarity=0.376 Sum_probs=61.7
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccc-hhchHHhhhcccccHHHHHHHhcccCCCchhhhhcccCC
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLED-DQIDAEILASLAVTMENFRYAMGKSSPSALRETIVEVPN 82 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~-~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~~~~~~~~ 82 (125)
.+..||.+++||||+||.++|++|+|.++||.+....... ..+..+... .+++.+||+.|+.+++||++...+..+++
T Consensus 405 ~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~-~pv~~~Dfe~Al~~v~pSvs~~d~~k~ek 483 (491)
T KOG0738|consen 405 NLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPK-MPVTNEDFEEALRKVRPSVSAADLEKYEK 483 (491)
T ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccc-cccchhhHHHHHHHcCcCCCHHHHHHHHH
Confidence 4789999999999999999999999999999876533211 112222233 56999999999999999999877777765
Q ss_pred c
Q psy5701 83 I 83 (125)
Q Consensus 83 v 83 (125)
|
T Consensus 484 W 484 (491)
T KOG0738|consen 484 W 484 (491)
T ss_pred H
Confidence 4
No 9
>KOG0729|consensus
Probab=99.34 E-value=7.9e-13 Score=95.32 Aligned_cols=58 Identities=26% Similarity=0.411 Sum_probs=52.3
Q ss_pred ccCCCchhhhhcccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 67 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 67 ~~~ps~~~~~~~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
++-||++--...+.|+++++||||..+....|+|.|+.|+.|||.|-++||.||||||
T Consensus 158 kidpsvtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvl 215 (435)
T KOG0729|consen 158 KIDPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVL 215 (435)
T ss_pred CCCCceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceE
Confidence 3456666556678899999999999999999999999999999999999999999997
No 10
>KOG0730|consensus
Probab=99.26 E-value=6e-12 Score=98.98 Aligned_cols=63 Identities=29% Similarity=0.438 Sum_probs=55.8
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCchhhhhcccC
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRETIVEVP 81 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~~~~~~~ 81 (125)
||.+||++|+|||||||.+||++|++.|+++.++ ...|+.+||++|++.++||.+......|.
T Consensus 625 dl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~---------------a~~i~~~hf~~al~~~r~s~~~~~~~~Ye 687 (693)
T KOG0730|consen 625 DLEELAQATEGYSGAEIVAVCQEAALLALRESIE---------------ATEITWQHFEEALKAVRPSLTSELLEKYE 687 (693)
T ss_pred cHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc---------------cccccHHHHHHHHHhhcccCCHHHHHHHH
Confidence 7899999999999999999999999999998765 23689999999999999999887665554
No 11
>KOG0727|consensus
Probab=99.24 E-value=5.3e-12 Score=90.49 Aligned_cols=47 Identities=28% Similarity=0.362 Sum_probs=45.3
Q ss_pred cccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 78 VEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 78 ~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
...|++++.||||++-.|++++|++++|+.|.++|+++||.||+|||
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvl 193 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVL 193 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceE
Confidence 46789999999999999999999999999999999999999999998
No 12
>KOG0726|consensus
Probab=99.23 E-value=6.1e-12 Score=91.62 Aligned_cols=47 Identities=30% Similarity=0.343 Sum_probs=43.6
Q ss_pred cccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 78 VEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 78 ~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
.+.|.-+|.||||+++..++|+|+|++||.|||.|+.+||+|||||.
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVI 223 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVI 223 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeE
Confidence 34566789999999999999999999999999999999999999995
No 13
>KOG0728|consensus
Probab=99.23 E-value=5.6e-12 Score=90.26 Aligned_cols=53 Identities=25% Similarity=0.336 Sum_probs=48.1
Q ss_pred chhhhhcccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 72 ALRETIVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 72 ~~~~~~~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
++--...+.|+.+++.|||++...++++|.|++|.+|||+|+.+||..|||||
T Consensus 133 VsLMmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvl 185 (404)
T KOG0728|consen 133 VSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVL 185 (404)
T ss_pred hHHHhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceE
Confidence 33334567899999999999999999999999999999999999999999997
No 14
>KOG0652|consensus
Probab=99.17 E-value=2.1e-11 Score=87.79 Aligned_cols=47 Identities=26% Similarity=0.253 Sum_probs=44.0
Q ss_pred cccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 78 VEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 78 ~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
...|.-.++||||++...++|-|+|.+|+.|++.|+.+||+||||||
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvL 209 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVL 209 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceE
Confidence 34567789999999999999999999999999999999999999998
No 15
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.17 E-value=2.2e-11 Score=92.60 Aligned_cols=48 Identities=31% Similarity=0.431 Sum_probs=45.8
Q ss_pred hcccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 77 IVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 77 ~~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
....|+++|+||||++.+|++|++.|++|+++|++|+++|+.||+|||
T Consensus 136 ~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvL 183 (398)
T PTZ00454 136 MSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVL 183 (398)
T ss_pred ccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEE
Confidence 456899999999999999999999999999999999999999999997
No 16
>KOG0733|consensus
Probab=99.14 E-value=4.2e-11 Score=93.97 Aligned_cols=76 Identities=30% Similarity=0.374 Sum_probs=58.6
Q ss_pred hHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCchhhhhccc
Q psy5701 4 YNLGIAAETH--GHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRETIVEV 80 (125)
Q Consensus 4 ~l~~lA~~T~--GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~~~~~~ 80 (125)
+|.+||+.|. ||+||||.+||++|++.|+++.+..++.........+. .+.++..||++|+++++||+.+..-..|
T Consensus 704 dl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~-~~~~t~~hF~eA~~~i~pSv~~~dr~~Y 781 (802)
T KOG0733|consen 704 DLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDSSEDDVTVRSS-TIIVTYKHFEEAFQRIRPSVSERDRKKY 781 (802)
T ss_pred CHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccccCcccceeee-eeeecHHHHHHHHHhcCCCccHHHHHHH
Confidence 5788999777 99999999999999999999988765544333221111 4568899999999999999987644333
No 17
>KOG0732|consensus
Probab=99.11 E-value=3.1e-11 Score=99.35 Aligned_cols=112 Identities=14% Similarity=0.044 Sum_probs=75.3
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCchhhhhcccCCc
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRETIVEVPNI 83 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~~~~~~~~v 83 (125)
++...++.+.+|.+++...-|.+++....+.....+...... ..+ .-...+....++....+.......+
T Consensus 193 ~~r~~~~s~~~~~~~~~~~~~~~~~~i~~~~s~~~~~~~~~~---------~~t-~~~~~~~~~~~~~~d~dp~~~~~~v 262 (1080)
T KOG0732|consen 193 TKRGQVQSRLHMHKSSGDTERSRSLRIESWSSGKNLQSLFDK---------LNT-KGLQTAGLRVQKEADSDPLSVDSSV 262 (1080)
T ss_pred hhhhhhcccccccccccchhhhhhhhhhhcccccccchhhhh---------hhc-CccccchhhcccccccCchhhhccc
Confidence 567788899999999999999988876544332211110000 000 0000111122222111223445678
Q ss_pred ccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCCC
Q psy5701 84 TWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVFD 125 (125)
Q Consensus 84 ~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl~ 125 (125)
+|++||||++++..|+|+|..|+.||+.|.+++|.||+|||.
T Consensus 263 ~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~ 304 (1080)
T KOG0732|consen 263 GFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLF 304 (1080)
T ss_pred CccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceee
Confidence 999999999999999999999999999999999999999984
No 18
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.05 E-value=1.9e-10 Score=93.40 Aligned_cols=82 Identities=29% Similarity=0.418 Sum_probs=60.1
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccc-hhchHHhhhcccccHHHHHHHhcccCCCchhhhhcccC
Q psy5701 3 YYNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLED-DQIDAEILASLAVTMENFRYAMGKSSPSALRETIVEVP 81 (125)
Q Consensus 3 ~~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~-~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~~~~~~~ 81 (125)
..+..||+.|+||+||||.++|++|++.++++......... .....+......|+.+||+.|+++++||++.+....|.
T Consensus 644 ~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~ 723 (733)
T TIGR01243 644 VDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYE 723 (733)
T ss_pred CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 35889999999999999999999999999998754321100 00000111235799999999999999999987666665
Q ss_pred Ccc
Q psy5701 82 NIT 84 (125)
Q Consensus 82 ~v~ 84 (125)
.|.
T Consensus 724 ~~~ 726 (733)
T TIGR01243 724 RLA 726 (733)
T ss_pred HHH
Confidence 443
No 19
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=4.4e-10 Score=83.56 Aligned_cols=50 Identities=40% Similarity=0.466 Sum_probs=45.0
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCC
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSP 70 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~p 70 (125)
+++.||+.|+|||||||+++|.||.|.|+|+.- ..||++||.+|..++..
T Consensus 345 d~e~la~~~~g~sGAdlkaictEAGm~AiR~~R-----------------~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 345 DLELLARLTEGFSGADLKAICTEAGMFAIRERR-----------------DEVTMEDFLKAVEKVVK 394 (406)
T ss_pred CHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc-----------------CeecHHHHHHHHHHHHh
Confidence 688999999999999999999999999999842 35999999999998854
No 20
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.99 E-value=2.4e-10 Score=86.82 Aligned_cols=69 Identities=32% Similarity=0.413 Sum_probs=55.4
Q ss_pred ccHHHHHHHhcccCCCch-----hhhhcccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 56 VTMENFRYAMGKSSPSAL-----RETIVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 56 i~~~Df~~Al~~~~ps~~-----~~~~~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
++..++..++..+-|+.. .......|+++|+||||+++.+++|++.|++|+++|++|+++|+++|+|||
T Consensus 96 v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvL 169 (389)
T PRK03992 96 VALNQQSLAIVEVLPSEKDPRVQAMEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVL 169 (389)
T ss_pred EEEcCcchhhhhcccccccchhheeeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceE
Confidence 444454555555555443 223466789999999999999999999999999999999999999999997
No 21
>KOG0737|consensus
Probab=98.96 E-value=7.5e-10 Score=82.44 Aligned_cols=71 Identities=31% Similarity=0.258 Sum_probs=54.0
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhch----------H--HhhhcccccHHHHHHHhcccCC
Q psy5701 3 YYNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQID----------A--EILASLAVTMENFRYAMGKSSP 70 (125)
Q Consensus 3 ~~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~----------~--~~~~~~~i~~~Df~~Al~~~~p 70 (125)
+++.++|+.|+||||+||+.+|+.|++.++|+.+... ....+.+ . ......+++++||.+|...+-+
T Consensus 283 vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~-~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~ 361 (386)
T KOG0737|consen 283 VDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSE-TGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSA 361 (386)
T ss_pred cCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhc-ccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhh
Confidence 5789999999999999999999999999999988764 1111111 0 0112467999999999998887
Q ss_pred Cchh
Q psy5701 71 SALR 74 (125)
Q Consensus 71 s~~~ 74 (125)
|+..
T Consensus 362 ~~~~ 365 (386)
T KOG0737|consen 362 SVAM 365 (386)
T ss_pred HHHH
Confidence 7544
No 22
>KOG0739|consensus
Probab=98.95 E-value=1.6e-10 Score=84.53 Aligned_cols=77 Identities=18% Similarity=0.312 Sum_probs=59.7
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCc------c-----------------------chhchHHhhhc
Q psy5701 3 YYNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDL------E-----------------------DDQIDAEILAS 53 (125)
Q Consensus 3 ~~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~------~-----------------------~~~~~~~~~~~ 53 (125)
.++.+|+++|+||||+||..++++|.|+++|+....... + -...+.+.+-.
T Consensus 322 ~d~~eL~~kTeGySGsDisivVrDalmePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~e 401 (439)
T KOG0739|consen 322 QDFKELARKTEGYSGSDISIVVRDALMEPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLE 401 (439)
T ss_pred hhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccC
Confidence 367899999999999999999999999999987543210 0 01223445567
Q ss_pred ccccHHHHHHHhcccCCCchhhhhcc
Q psy5701 54 LAVTMENFRYAMGKSSPSALRETIVE 79 (125)
Q Consensus 54 ~~i~~~Df~~Al~~~~ps~~~~~~~~ 79 (125)
+++|+.||.+++.+++|++....+..
T Consensus 402 P~vt~~D~~k~l~~tkPTvn~~Dl~k 427 (439)
T KOG0739|consen 402 PPVTMRDFLKSLSRTKPTVNEDDLLK 427 (439)
T ss_pred CCccHHHHHHHHhhcCCCCCHHHHHH
Confidence 78999999999999999997765443
No 23
>KOG0736|consensus
Probab=98.95 E-value=6.7e-10 Score=89.07 Aligned_cols=79 Identities=28% Similarity=0.342 Sum_probs=61.2
Q ss_pred hHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCchhhhhcccCC
Q psy5701 4 YNLGIAAETH-GHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRETIVEVPN 82 (125)
Q Consensus 4 ~l~~lA~~T~-GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~~~~~~~~ 82 (125)
+|.+||++|+ .|+|||+-+||.+|.+.|++|..+..+.............+.|+++||.+|+++.+||++...+..|+.
T Consensus 867 dL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~ 946 (953)
T KOG0736|consen 867 DLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEM 946 (953)
T ss_pred CHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 5889999997 899999999999999999999887654321111111123567999999999999999999876666543
No 24
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.95 E-value=6.1e-10 Score=86.94 Aligned_cols=49 Identities=24% Similarity=0.457 Sum_probs=46.3
Q ss_pred hhcccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 76 TIVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 76 ~~~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
.....|+++|+||||++..+++|++.|++|++||++|+++|++||+|||
T Consensus 172 ~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GIL 220 (512)
T TIGR03689 172 VLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVL 220 (512)
T ss_pred eeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceE
Confidence 3467899999999999999999999999999999999999999999997
No 25
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.87 E-value=1.7e-09 Score=83.22 Aligned_cols=48 Identities=27% Similarity=0.295 Sum_probs=45.5
Q ss_pred hcccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 77 IVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 77 ~~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
....|.++|+||||+++.+++|++.+++|+.+|++|+.+|+.+|+|||
T Consensus 174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVL 221 (438)
T PTZ00361 174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVI 221 (438)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEE
Confidence 456788999999999999999999999999999999999999999987
No 26
>KOG0739|consensus
Probab=98.86 E-value=5.6e-10 Score=81.71 Aligned_cols=49 Identities=29% Similarity=0.473 Sum_probs=43.6
Q ss_pred hhhcccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 75 ETIVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 75 ~~~~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
.+..+.|+|.|+||.||+.+|+.|+|+|++|+++|.+|.. +-+|-+|+|
T Consensus 122 AIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiL 170 (439)
T KOG0739|consen 122 AIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGIL 170 (439)
T ss_pred hhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEE
Confidence 3557789999999999999999999999999999999986 557778876
No 27
>KOG0738|consensus
Probab=98.84 E-value=1.8e-09 Score=81.18 Aligned_cols=50 Identities=32% Similarity=0.535 Sum_probs=45.2
Q ss_pred hhhhcccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 74 RETIVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 74 ~~~~~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
++++...|+++|+||.|+.++|+.|+|+|..|+++|+.|+. ..+|=||||
T Consensus 200 rdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvL 249 (491)
T KOG0738|consen 200 RDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVL 249 (491)
T ss_pred HHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceee
Confidence 35677889999999999999999999999999999999997 447889997
No 28
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.76 E-value=6.2e-09 Score=78.38 Aligned_cols=48 Identities=35% Similarity=0.477 Sum_probs=45.6
Q ss_pred hcccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 77 IVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 77 ~~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
....|++.|+||||+++++++|++.+.+|+++|+.|..+|+.+|+|||
T Consensus 113 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvL 160 (364)
T TIGR01242 113 VEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVL 160 (364)
T ss_pred eccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEE
Confidence 456789999999999999999999999999999999999999999986
No 29
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.72 E-value=2.1e-08 Score=76.21 Aligned_cols=55 Identities=35% Similarity=0.465 Sum_probs=48.4
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCchhh
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRE 75 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~ 75 (125)
++..||..|+||+|+||.++|++|++.|+++. ...|+.+||.+|+.+++++...+
T Consensus 325 ~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~-----------------~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 325 DLEELAELTEGASGADLKAICTEAGMFAIRDD-----------------RTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-----------------CCCcCHHHHHHHHHHHhcccccc
Confidence 57899999999999999999999999999863 12589999999999999887654
No 30
>KOG0737|consensus
Probab=98.71 E-value=8.4e-09 Score=76.93 Aligned_cols=44 Identities=34% Similarity=0.490 Sum_probs=39.5
Q ss_pred CCcccccccchHHHHHHHHHHhhhhccChHHHhhCC-CCCCCCCC
Q psy5701 81 PNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNE-HAMTHQVF 124 (125)
Q Consensus 81 ~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~g-i~~p~Gvl 124 (125)
-.++|+||||++++|+.|++.|.+|+++|++|...+ ++||+|||
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiL 131 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGIL 131 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccce
Confidence 358999999999999999999999999999995433 57999998
No 31
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.67 E-value=3.5e-08 Score=75.26 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=44.6
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCC
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPS 71 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps 71 (125)
.+.++|.+|+||+|+||.++|++|++.|+++. ...|+.+||.+|++++...
T Consensus 339 d~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~-----------------~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 339 DLEDFVSRPEKISAADIAAICQEAGMQAVRKN-----------------RYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-----------------CCccCHHHHHHHHHHHHhc
Confidence 57889999999999999999999999999873 2369999999999997544
No 32
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.66 E-value=5e-08 Score=76.14 Aligned_cols=52 Identities=21% Similarity=0.204 Sum_probs=46.0
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCc
Q psy5701 3 YYNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSA 72 (125)
Q Consensus 3 ~~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~ 72 (125)
+++..||+.|+|||||||.++|.+|+..|+.+. ..++.+||..|+++++|++
T Consensus 416 ~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~------------------~~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 416 YDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK------------------REFTTDDILLALKQFIPLA 467 (489)
T ss_pred cCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC------------------CCcCHHHHHHHHHhcCCCc
Confidence 568999999999999999999999999887531 2589999999999999985
No 33
>KOG0734|consensus
Probab=98.64 E-value=2.3e-08 Score=77.97 Aligned_cols=44 Identities=32% Similarity=0.524 Sum_probs=42.0
Q ss_pred cCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 80 VPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 80 ~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
..+++|+|+-|.+++|++|+|+|++ |+.|+.|.++|-+.|||||
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVL 341 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVL 341 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceE
Confidence 3478999999999999999999999 9999999999999999998
No 34
>KOG0651|consensus
Probab=98.63 E-value=1.2e-08 Score=74.96 Aligned_cols=46 Identities=28% Similarity=0.397 Sum_probs=43.2
Q ss_pred ccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 79 EVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 79 ~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
...+++++.+||+..+..+++|.|+.|+.+|++|.++||+||+|||
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~l 170 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLL 170 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeE
Confidence 3456899999999999999999999999999999999999999997
No 35
>KOG0731|consensus
Probab=98.62 E-value=3.2e-08 Score=79.90 Aligned_cols=45 Identities=22% Similarity=0.369 Sum_probs=42.4
Q ss_pred ccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 79 EVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 79 ~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
...+|.|.|+.|.+++|++|+|.|.+ |++|+.|+++|.+.|||||
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvL 348 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVL 348 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceE
Confidence 34559999999999999999999999 9999999999999999997
No 36
>KOG0740|consensus
Probab=98.56 E-value=3.3e-08 Score=75.42 Aligned_cols=76 Identities=29% Similarity=0.347 Sum_probs=58.5
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCchhhhhcccCC
Q psy5701 3 YYNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRETIVEVPN 82 (125)
Q Consensus 3 ~~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~~~~~~~~ 82 (125)
..+..||+.|+||+|+||.+||++|++..++......+. ..+. ....+.++..||+.|++.++|+++.+....+.+
T Consensus 343 ~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~--~~~~--~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~ 418 (428)
T KOG0740|consen 343 LDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDL--EFID--ADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEK 418 (428)
T ss_pred HHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhh--hhcc--hhccCCCCcchHHHHHHhhccccCccccchhHH
Confidence 468899999999999999999999999988775432000 0111 224567999999999999999999887766643
No 37
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1.7e-07 Score=73.22 Aligned_cols=55 Identities=38% Similarity=0.440 Sum_probs=49.2
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCch
Q psy5701 3 YYNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSAL 73 (125)
Q Consensus 3 ~~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~ 73 (125)
.++..||+.|+||+|+||..+|++|++.++++.. ...++.+||..|+++++||+.
T Consensus 434 ~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~----------------~~~~~~~~~~~a~~~~~p~~~ 488 (494)
T COG0464 434 VDLEELAEITEGYSGADIAALVREAALEALREAR----------------RREVTLDDFLDALKKIKPSVT 488 (494)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc----------------cCCccHHHHHHHHHhcCCCCC
Confidence 4688999999999999999999999999998753 235999999999999999975
No 38
>KOG0741|consensus
Probab=98.55 E-value=1.6e-07 Score=73.40 Aligned_cols=67 Identities=22% Similarity=0.236 Sum_probs=57.0
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCc
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSA 72 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~ 72 (125)
+|++||.+|..||||+|..|++.|...|+.|.+... .....++.....+.|++.||..||..++|+.
T Consensus 428 dl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~--~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAF 494 (744)
T KOG0741|consen 428 DLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAG--GKVEVDPVAIENLKVTRGDFLNALEDVKPAF 494 (744)
T ss_pred CHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccC--cceecCchhhhheeecHHHHHHHHHhcCccc
Confidence 689999999999999999999999999999987653 1234445556678899999999999999985
No 39
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.48 E-value=2.5e-07 Score=71.36 Aligned_cols=50 Identities=30% Similarity=0.391 Sum_probs=44.2
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCC
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSP 70 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~p 70 (125)
++..+|..|+||+||||.++|++|++.|+++. ...|+.+||..|+.++..
T Consensus 377 dl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~-----------------r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 377 DLEEFIMAKDELSGADIKAICTEAGLLALRER-----------------RMKVTQADFRKAKEKVLY 426 (438)
T ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-----------------CCccCHHHHHHHHHHHHh
Confidence 57899999999999999999999999999874 235999999999999743
No 40
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.47 E-value=3.6e-07 Score=68.88 Aligned_cols=48 Identities=42% Similarity=0.518 Sum_probs=42.5
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhccc
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKS 68 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~ 68 (125)
.+..||+.|+||+|+||.++|++|++.|+++. ...|+.+||.+|+.++
T Consensus 316 ~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~-----------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 316 DLEAIAKMTEGASGADLKAICTEAGMFAIREE-----------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----------------CCccCHHHHHHHHHHh
Confidence 57899999999999999999999999998873 2259999999999875
No 41
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.44 E-value=2.7e-07 Score=80.34 Aligned_cols=52 Identities=23% Similarity=0.279 Sum_probs=44.9
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCC
Q psy5701 3 YYNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPS 71 (125)
Q Consensus 3 ~~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps 71 (125)
.++..+|++|+|||||||++||+||++.|+++.. ..|+.+||..|+.++...
T Consensus 1829 vdl~~LA~~T~GfSGADLanLvNEAaliAirq~k-----------------s~Id~~~I~~Al~Rq~~g 1880 (2281)
T CHL00206 1829 FHTNGFGSITMGSNARDLVALTNEALSISITQKK-----------------SIIDTNTIRSALHRQTWD 1880 (2281)
T ss_pred ccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC-----------------CccCHHHHHHHHHHHHhh
Confidence 4688999999999999999999999999998742 258899999999988644
No 42
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.44 E-value=5e-07 Score=70.57 Aligned_cols=96 Identities=10% Similarity=0.076 Sum_probs=61.3
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCchhh-hh-cccC
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRE-TI-VEVP 81 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~-~~-~~~~ 81 (125)
.++.|++.|.|++-.|+..+++.+... . . .++.++....++.-+....+. .. ...+
T Consensus 166 ~~~~l~~~~~gls~~~~~~~~~~~~~~----~-~-----------------~~~~~~~~~i~~~k~q~~~~~~~le~~~~ 223 (489)
T CHL00195 166 LLENLTRACQGLSLERIRRVLSKIIAT----Y-K-----------------TIDENSIPLILEEKKQIISQTEILEFYSV 223 (489)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHH----c-C-----------------CCChhhHHHHHHHHHHHHhhhccccccCC
Confidence 467889999999999998888764321 0 0 122232222222111111111 11 1235
Q ss_pred CcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 82 NITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 82 ~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
+++|+||||++++|+.|++... .+++.+.++|+++|||||
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~---~~~~~~~~~gl~~pkGIL 263 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRST---SFSKQASNYGLPTPRGLL 263 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HhhHHHHhcCCCCCceEE
Confidence 6889999999999999986543 456778899999999997
No 43
>KOG0732|consensus
Probab=98.39 E-value=3.6e-07 Score=75.98 Aligned_cols=73 Identities=36% Similarity=0.451 Sum_probs=58.4
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCchhhh
Q psy5701 3 YYNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRET 76 (125)
Q Consensus 3 ~~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~~ 76 (125)
+++..||+.|.||.||||++||.+|++.++++....+..+...+.. ....+.|...||..|+.++.|+..+..
T Consensus 461 ~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~-d~~~ikV~~~~f~~A~~~i~ps~~R~~ 533 (1080)
T KOG0732|consen 461 ELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLI-DVALIKVEVRDFVEAMSRITPSSRRSS 533 (1080)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeecccccccc-cchhhhhhhHhhhhhhhccCCCCCccc
Confidence 6889999999999999999999999999999987665443322221 123345899999999999999998853
No 44
>KOG0740|consensus
Probab=98.30 E-value=4.8e-07 Score=69.21 Aligned_cols=52 Identities=29% Similarity=0.369 Sum_probs=45.1
Q ss_pred hhhhhcccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCCC
Q psy5701 73 LRETIVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVFD 125 (125)
Q Consensus 73 ~~~~~~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl~ 125 (125)
..++...-+++.|+||+|++.+|+.+.+.++||+..|++|..+. .|++|+|.
T Consensus 140 ~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLL 191 (428)
T KOG0740|consen 140 RNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLL 191 (428)
T ss_pred HHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhhe
Confidence 34455677889999999999999999999999999999998766 78888873
No 45
>KOG0731|consensus
Probab=98.29 E-value=8.8e-07 Score=71.77 Aligned_cols=51 Identities=33% Similarity=0.495 Sum_probs=43.5
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCC
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPS 71 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps 71 (125)
+|..||.+|+||+||||.+||.+|+..|.|+... .|+..||+.|++++...
T Consensus 506 dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~-----------------~i~~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 506 DLSKLASLTPGFSGADLANLCNEAALLAARKGLR-----------------EIGTKDLEYAIERVIAG 556 (774)
T ss_pred hHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccC-----------------ccchhhHHHHHHHHhcc
Confidence 5666999999999999999999999999987532 58899999999966443
No 46
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.29 E-value=8.6e-07 Score=69.38 Aligned_cols=51 Identities=33% Similarity=0.405 Sum_probs=43.4
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCC
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPS 71 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps 71 (125)
.+..+|..|+||+|+||.++|++|+..+.++. ...|+.+||+.|+.++...
T Consensus 248 ~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~-----------------~~~i~~~~l~~a~~~~~~~ 298 (495)
T TIGR01241 248 DLKAVARRTPGFSGADLANLLNEAALLAARKN-----------------KTEITMNDIEEAIDRVIAG 298 (495)
T ss_pred hHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-----------------CCCCCHHHHHHHHHHHhcc
Confidence 57899999999999999999999998887652 2358999999999987643
No 47
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.25 E-value=1.8e-06 Score=69.66 Aligned_cols=52 Identities=40% Similarity=0.357 Sum_probs=44.2
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCc
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSA 72 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~ 72 (125)
++..||+.|+|||||||.+||++|+..|.++. ...|+..||+.|+.++.++.
T Consensus 345 d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~-----------------~~~i~~~d~~~a~~~v~~g~ 396 (644)
T PRK10733 345 DAAIIARGTPGFSGADLANLVNEAALFAARGN-----------------KRVVSMVEFEKAKDKIMMGA 396 (644)
T ss_pred CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC-----------------CCcccHHHHHHHHHHHhccc
Confidence 56789999999999999999999999988752 23589999999998886654
No 48
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.17 E-value=1.8e-06 Score=67.59 Aligned_cols=46 Identities=33% Similarity=0.508 Sum_probs=43.0
Q ss_pred cccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 78 VEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 78 ~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
...++++|+||+|++++|+++++.+.+ +++|+.|+++|.++|+|||
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giL 92 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVL 92 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEE
Confidence 446789999999999999999999998 9999999999999999987
No 49
>KOG0728|consensus
Probab=98.14 E-value=2.4e-06 Score=61.72 Aligned_cols=48 Identities=33% Similarity=0.542 Sum_probs=43.2
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhccc
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKS 68 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~ 68 (125)
.|..||.+..|-|||+++.+|.||.|.|+|+. ...+|++||+-|..++
T Consensus 341 ~l~kiaekm~gasgaevk~vcteagm~alrer-----------------rvhvtqedfemav~kv 388 (404)
T KOG0728|consen 341 NLRKIAEKMPGASGAEVKGVCTEAGMYALRER-----------------RVHVTQEDFEMAVAKV 388 (404)
T ss_pred CHHHHHHhCCCCccchhhhhhhhhhHHHHHHh-----------------hccccHHHHHHHHHHH
Confidence 57899999999999999999999999999874 2459999999998877
No 50
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=3.4e-06 Score=66.99 Aligned_cols=48 Identities=38% Similarity=0.400 Sum_probs=42.5
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhccc
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKS 68 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~ 68 (125)
.+..||+.|+||+||||.++|.||+..+.|+.. ..|++.||.+|..++
T Consensus 343 dl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~-----------------~~i~~~~i~ea~drv 390 (596)
T COG0465 343 DLKKIARGTPGFSGADLANLLNEAALLAARRNK-----------------KEITMRDIEEAIDRV 390 (596)
T ss_pred CHHHHhhhCCCcccchHhhhHHHHHHHHHHhcC-----------------eeEeccchHHHHHHH
Confidence 467799999999999999999999999998853 358899999999887
No 51
>CHL00176 ftsH cell division protein; Validated
Probab=98.02 E-value=9.4e-06 Score=65.40 Aligned_cols=48 Identities=38% Similarity=0.414 Sum_probs=41.4
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhccc
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKS 68 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~ 68 (125)
.+..||++|+||+|+||.++|++|+..+.++. ...|+.+||+.|+.++
T Consensus 376 ~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~-----------------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 376 SLELIARRTPGFSGADLANLLNEAAILTARRK-----------------KATITMKEIDTAIDRV 423 (638)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC-----------------CCCcCHHHHHHHHHHH
Confidence 57889999999999999999999998887653 2258899999999876
No 52
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=4.4e-06 Score=66.40 Aligned_cols=45 Identities=29% Similarity=0.439 Sum_probs=42.6
Q ss_pred ccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 79 EVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 79 ~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
...+++|.|+.|.+++|+++.|.|.+ +++|..|.++|.+.|||||
T Consensus 143 ~~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvl 187 (596)
T COG0465 143 DQVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVL 187 (596)
T ss_pred cccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhccccccccee
Confidence 35679999999999999999999999 9999999999999999997
No 53
>KOG0726|consensus
Probab=97.98 E-value=9.3e-06 Score=59.81 Aligned_cols=48 Identities=33% Similarity=0.504 Sum_probs=41.1
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccC
Q psy5701 5 NLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSS 69 (125)
Q Consensus 5 l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ 69 (125)
|+.+...-+.+|||||+++|.||.+.|+|+.- .+++++||.+|.+++-
T Consensus 380 le~li~~kddlSGAdIkAictEaGllAlRerR-----------------m~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 380 LEELIMTKDDLSGADIKAICTEAGLLALRERR-----------------MKVTMEDFKKAKEKVL 427 (440)
T ss_pred HHHHhhcccccccccHHHHHHHHhHHHHHHHH-----------------hhccHHHHHHHHHHHH
Confidence 56677778899999999999999999999752 3699999999998773
No 54
>KOG0734|consensus
Probab=97.90 E-value=1.3e-05 Score=63.13 Aligned_cols=48 Identities=35% Similarity=0.403 Sum_probs=40.1
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhccc
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKS 68 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~ 68 (125)
++.-||+-|.||+||||.+|+..|+..|.... ...++++|++.|-.++
T Consensus 494 D~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg-----------------a~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 494 DPKIIARGTPGFSGADLANLVNQAALKAAVDG-----------------AEMVTMKHLEFAKDRI 541 (752)
T ss_pred CHhHhccCCCCCchHHHHHHHHHHHHHHHhcC-----------------cccccHHHHhhhhhhe
Confidence 67889999999999999999999998876543 2358888888887776
No 55
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=97.86 E-value=2e-06 Score=49.09 Aligned_cols=38 Identities=34% Similarity=0.427 Sum_probs=28.1
Q ss_pred chHHhhhcccccHHHHHHHhcccCCCchhhhhcccCCc
Q psy5701 46 IDAEILASLAVTMENFRYAMGKSSPSALRETIVEVPNI 83 (125)
Q Consensus 46 ~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~~~~~~~~v 83 (125)
++.+.+..+.|+.+||+.||++++||++++.+..|..|
T Consensus 20 i~~~~l~~p~it~~DF~~Al~~~kpSVs~~dl~~ye~w 57 (62)
T PF09336_consen 20 IPAEKLKEPPITMEDFEEALKKVKPSVSQEDLKKYEEW 57 (62)
T ss_dssp S-GGGB-HHHBCHHHHHHHHHTCGGSS-HHHHHHHHHH
T ss_pred cCcccccCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 44444555679999999999999999999877777543
No 56
>KOG0735|consensus
Probab=97.81 E-value=4.5e-05 Score=61.75 Aligned_cols=37 Identities=35% Similarity=0.364 Sum_probs=33.3
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcC
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLID 40 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~ 40 (125)
+|+.+|.+|+||+||||++||..|.+.|+++.....+
T Consensus 858 dl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~~ 894 (952)
T KOG0735|consen 858 DLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKRED 894 (952)
T ss_pred chHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhcC
Confidence 6888999999999999999999999999999776543
No 57
>KOG0652|consensus
Probab=97.78 E-value=9.3e-06 Score=59.06 Aligned_cols=49 Identities=24% Similarity=0.313 Sum_probs=42.7
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCC
Q psy5701 5 NLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSP 70 (125)
Q Consensus 5 l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~p 70 (125)
.++||+.|++|.||.++++|-||.|.|+|+... .|+.+||..++..++.
T Consensus 366 feELaRsTddFNGAQcKAVcVEAGMiALRr~at-----------------ev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 366 FEELARSTDDFNGAQCKAVCVEAGMIALRRGAT-----------------EVTHEDFMEGILEVQA 414 (424)
T ss_pred HHHHhhcccccCchhheeeehhhhHHHHhcccc-----------------cccHHHHHHHHHHHHH
Confidence 468999999999999999999999999998532 4889999999887753
No 58
>KOG0727|consensus
Probab=97.61 E-value=9.2e-05 Score=53.76 Aligned_cols=49 Identities=24% Similarity=0.367 Sum_probs=42.9
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccC
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSS 69 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ 69 (125)
+|+.+..+.+..|||||.++|++|.|.|+|.. ...|...||++|.+...
T Consensus 349 dle~~v~rpdkis~adi~aicqeagm~avr~n-----------------ryvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 349 DLEDLVARPDKISGADINAICQEAGMLAVREN-----------------RYVVLQKDFEKAYKTVV 397 (408)
T ss_pred CHHHHhcCccccchhhHHHHHHHHhHHHHHhc-----------------ceeeeHHHHHHHHHhhc
Confidence 68889999999999999999999999999874 23588999999988764
No 59
>CHL00176 ftsH cell division protein; Validated
Probab=97.59 E-value=6.2e-05 Score=60.75 Aligned_cols=44 Identities=30% Similarity=0.443 Sum_probs=41.1
Q ss_pred cCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 80 VPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 80 ~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
...++|+||+|++++|++|.+.+.+ +++|+.|+.+|.++|+|||
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVL 220 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVL 220 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEE
Confidence 3568999999999999999999888 9999999999999999997
No 60
>KOG0729|consensus
Probab=97.48 E-value=0.0002 Score=52.41 Aligned_cols=50 Identities=26% Similarity=0.335 Sum_probs=42.2
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCc
Q psy5701 6 LGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSA 72 (125)
Q Consensus 6 ~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~ 72 (125)
+-||+.|+.-+||||.++|.||.|.|++..-. ..|..||..|..++....
T Consensus 373 ellarlcpnstgaeirsvcteagmfairarrk-----------------~atekdfl~av~kvvkgy 422 (435)
T KOG0729|consen 373 ELLARLCPNSTGAEIRSVCTEAGMFAIRARRK-----------------VATEKDFLDAVNKVVKGY 422 (435)
T ss_pred HHHHhhCCCCcchHHHHHHHHhhHHHHHHHhh-----------------hhhHHHHHHHHHHHHHHH
Confidence 34999999999999999999999999986422 478999999999885443
No 61
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.22 E-value=0.00073 Score=49.30 Aligned_cols=52 Identities=25% Similarity=0.192 Sum_probs=39.8
Q ss_pred hhHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCC
Q psy5701 3 YYNLGIAAETHGHVGADLASLC-SEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPS 71 (125)
Q Consensus 3 ~~l~~lA~~T~GfsgaDL~~L~-~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps 71 (125)
.++..+|.+|.||||.||+.=+ ..|.+.|+.+.. -.|+.+||+.|+++-+++
T Consensus 306 ~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~-----------------e~v~~edie~al~k~r~~ 358 (368)
T COG1223 306 ADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDR-----------------EKVEREDIEKALKKERKR 358 (368)
T ss_pred cCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhch-----------------hhhhHHHHHHHHHhhccc
Confidence 4689999999999999998754 455556665432 258899999999986554
No 62
>CHL00181 cbbX CbbX; Provisional
Probab=95.55 E-value=0.012 Score=43.17 Aligned_cols=36 Identities=19% Similarity=0.124 Sum_probs=32.4
Q ss_pred cccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCC
Q psy5701 85 WEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTH 121 (125)
Q Consensus 85 w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~ 121 (125)
+++++|++++|++|++.+.| +.+++.+++.|+++|+
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~ 57 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSN 57 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCC
Confidence 45799999999999999999 7788999999999885
No 63
>KOG0651|consensus
Probab=95.21 E-value=0.0083 Score=44.79 Aligned_cols=48 Identities=33% Similarity=0.447 Sum_probs=39.6
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhccc
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKS 68 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~ 68 (125)
+.+.+.+.++||.|+|+.+.|+||.+.++++... .+..+||..+..++
T Consensus 326 d~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~-----------------~vl~Ed~~k~vrk~ 373 (388)
T KOG0651|consen 326 DDEAILKLVDGFNGADLRNVCTEAGMFAIPEERD-----------------EVLHEDFMKLVRKQ 373 (388)
T ss_pred cHHHHHHHHhccChHHHhhhcccccccccchhhH-----------------HHhHHHHHHHHHHH
Confidence 3578999999999999999999999999876422 36688998887765
No 64
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.19 E-value=0.04 Score=43.74 Aligned_cols=67 Identities=16% Similarity=0.230 Sum_probs=46.1
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCchhhhhcccC-Cccccccc
Q psy5701 11 ETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRETIVEVP-NITWEDIG 89 (125)
Q Consensus 11 ~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~~~~~~~-~v~w~dig 89 (125)
.+++||||+|+++|.+|...|+++.+.. ....|+.+|+..|+..--... +..+... .-.|..|.
T Consensus 434 ~~d~~sGa~i~~iv~~a~~~ai~~~~~~-------------~~~~~~~~~l~~a~~~e~~~~--~~~~~~~~~~~w~~~~ 498 (512)
T TIGR03689 434 FKDFVSGAMIANIVDRAKKRAIKDHITG-------------GQVGLRIEHLLAAVLDEFRES--EDLPNTTNPDDWARIS 498 (512)
T ss_pred ecccccHHHHHHHHHHHHHHHHHHHHhc-------------CCcCcCHHHHHHHHHHhhccc--ccCCCCCCHHHHhhhh
Confidence 4789999999999999999999987642 123588999999987542111 1222222 23488887
Q ss_pred chH
Q psy5701 90 GLE 92 (125)
Q Consensus 90 Gl~ 92 (125)
|..
T Consensus 499 ~~~ 501 (512)
T TIGR03689 499 GKK 501 (512)
T ss_pred CCC
Confidence 653
No 65
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.10 E-value=0.02 Score=46.57 Aligned_cols=43 Identities=28% Similarity=0.402 Sum_probs=39.5
Q ss_pred CCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 81 PNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 81 ~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
...+|.|++|++.++.+|.+.+.+ +++|+.|..++.+.|+|||
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gil 189 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVL 189 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEE
Confidence 356899999999999999999998 7889999999999999986
No 66
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.00 E-value=0.059 Score=39.51 Aligned_cols=33 Identities=21% Similarity=0.168 Sum_probs=30.7
Q ss_pred cccchHHHHHHHHHHhhhhccChHHHhhCCCCCC
Q psy5701 87 DIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMT 120 (125)
Q Consensus 87 digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p 120 (125)
+++|++++|+.|++.+.| +.+++.+.+.|++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~ 55 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASA 55 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcC
Confidence 589999999999999999 889999999999874
No 67
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.26 E-value=0.074 Score=39.13 Aligned_cols=42 Identities=24% Similarity=0.306 Sum_probs=35.2
Q ss_pred ccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 79 EVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 79 ~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
..++++++||-|.+++|+..+-.+++ |.+|+.|..- .||-||
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~W---APknVL 155 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGDW---APKNVL 155 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHH-hhChHHhccc---CcceeE
Confidence 46789999999999999999988888 9999999653 466554
No 68
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=89.22 E-value=0.44 Score=34.29 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=29.1
Q ss_pred ccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCC
Q psy5701 86 EDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQV 123 (125)
Q Consensus 86 ~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gv 123 (125)
+++.||+++|+.|++.+.|+..+ ....+.|++++.+.
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~ 42 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQV 42 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCc
Confidence 67999999999999999998665 44445788776653
No 69
>KOG0742|consensus
Probab=87.72 E-value=0.55 Score=36.81 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.1
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHH
Q psy5701 4 YNLGIAAETHGHVGADLASLCSE 26 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~ 26 (125)
-+++.|++|+||||.+|..|+-.
T Consensus 565 ~~~EaAkkTeGfSGREiakLva~ 587 (630)
T KOG0742|consen 565 KCSEAAKKTEGFSGREIAKLVAS 587 (630)
T ss_pred HHHHHHHhccCCcHHHHHHHHHH
Confidence 36889999999999999999753
No 70
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=84.02 E-value=3.2 Score=29.56 Aligned_cols=48 Identities=17% Similarity=0.146 Sum_probs=37.1
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccC
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSS 69 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ 69 (125)
.+..|++.|.|+... |..+|..|...+..+. ...|+.+++..++..+.
T Consensus 220 ~~~~i~~~s~G~p~~-i~~l~~~~~~~a~~~~-----------------~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 220 AFDAIHRFSRGIPRL-INILCDRLLLSAFLEE-----------------KREIGGEEVREVIAEID 267 (269)
T ss_pred HHHHHHHHcCCcccH-HHHHHHHHHHHHHHcC-----------------CCCCCHHHHHHHHHHhh
Confidence 467789999999766 9999999988876542 22588999998887653
No 71
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=78.30 E-value=2.2 Score=32.34 Aligned_cols=19 Identities=42% Similarity=0.328 Sum_probs=14.1
Q ss_pred cccHHHHHHHhcccCCCch
Q psy5701 55 AVTMENFRYAMGKSSPSAL 73 (125)
Q Consensus 55 ~i~~~Df~~Al~~~~ps~~ 73 (125)
.|+.+|+.+|+..+.++..
T Consensus 269 ~I~~~~v~~a~~~~~~~~~ 287 (394)
T PRK00411 269 KVTEEDVRKAYEKSEIVHL 287 (394)
T ss_pred CcCHHHHHHHHHHHHHHHH
Confidence 5888888888888755443
No 72
>KOG0741|consensus
Probab=75.92 E-value=3.1 Score=33.76 Aligned_cols=47 Identities=15% Similarity=0.345 Sum_probs=36.5
Q ss_pred cccCCccccc--ccchH-HHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 78 VEVPNITWED--IGGLE-GVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 78 ~~~~~v~w~d--igGl~-~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
.-.|+|.|++ ||||+ +.-+..+.+...-.--|+.-+++|++-.||+|
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiL 260 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGIL 260 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEE
Confidence 3457788876 88986 34555667776667789999999999999987
No 73
>COG5248 TAF19 Transcription initiation factor TFIID, subunit TAF13 [Transcription]
Probab=66.80 E-value=6.1 Score=24.96 Aligned_cols=41 Identities=22% Similarity=0.341 Sum_probs=28.0
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhccc
Q psy5701 9 AAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKS 68 (125)
Q Consensus 9 A~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~ 68 (125)
++.-++|+..=+..+|.+|...|-.+. .+..+||.-||.+=
T Consensus 33 ~~~L~e~V~dY~~~~ctna~~~Aq~rn-------------------K~k~eDfkfaLr~D 73 (126)
T COG5248 33 AEALHEYVLDYMSILCTNAHNMAQVRN-------------------KTKTEDFKFALRRD 73 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-------------------cchHHHHHHHHhhC
Confidence 455567788888899999887765442 24566777776654
No 74
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=62.97 E-value=4.2 Score=31.38 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=23.4
Q ss_pred ccccccchHHHHHHHHHHhhhhccChH
Q psy5701 84 TWEDIGGLEGVKRELQELVQPSLWSPS 110 (125)
Q Consensus 84 ~w~digGl~~~k~~l~~~i~~P~~~p~ 110 (125)
.|++|.|.+.+++.|+.++..+..++.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~ 29 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVA 29 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccc
Confidence 599999999999999999999865443
No 75
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=62.51 E-value=20 Score=20.45 Aligned_cols=13 Identities=15% Similarity=0.271 Sum_probs=9.1
Q ss_pred ccccHHHHHHHhc
Q psy5701 54 LAVTMENFRYAMG 66 (125)
Q Consensus 54 ~~i~~~Df~~Al~ 66 (125)
..+|.+|+..||+
T Consensus 54 ~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 54 TKLTTDDINSALR 66 (66)
T ss_dssp SSB-HHHHHHHH-
T ss_pred CCCCHHHHHHHhC
Confidence 3588999999885
No 76
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=61.39 E-value=27 Score=26.17 Aligned_cols=50 Identities=28% Similarity=0.387 Sum_probs=35.3
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCchh
Q psy5701 6 LGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALR 74 (125)
Q Consensus 6 ~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~ 74 (125)
..|-..|+|..| +|..|+..|+..|++.-.+ .||.+.+.. +..+.||--+
T Consensus 245 ~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG~E-----------------~It~~~l~~-~~~~~ps~R~ 294 (302)
T PF05621_consen 245 RRIHERSEGLIG-ELSRLLNAAAIAAIRSGEE-----------------RITREILDK-IDWVPPSERR 294 (302)
T ss_pred HHHHHHcCCchH-HHHHHHHHHHHHHHhcCCc-----------------eecHHHHhh-CCCcChhhhh
Confidence 567788999876 6999999999999986432 466666554 5556665433
No 77
>CHL00206 ycf2 Ycf2; Provisional
Probab=58.74 E-value=4.8 Score=37.35 Aligned_cols=22 Identities=5% Similarity=-0.102 Sum_probs=18.5
Q ss_pred hhhccChHHHhhCCCCCCCCCC
Q psy5701 103 QPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 103 ~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
..|.+.+..+.++|++||||||
T Consensus 1613 ~~~s~~kP~slrLGl~pPKGIL 1634 (2281)
T CHL00206 1613 HFPSHGKPFSLRLALSPSRGIL 1634 (2281)
T ss_pred cCcccCcCHHHHcCCCCCCceE
Confidence 3456677888999999999998
No 78
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=56.96 E-value=26 Score=28.19 Aligned_cols=42 Identities=14% Similarity=0.093 Sum_probs=29.0
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhc
Q psy5701 6 LGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMG 66 (125)
Q Consensus 6 ~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~ 66 (125)
..|+..+. +++++.++|+.|+..+..+. ...|+.+|++.++.
T Consensus 289 ~~I~~y~~--n~Rel~nll~~Aa~~A~~~~-----------------~~~It~~dI~~vl~ 330 (531)
T TIGR02902 289 ELIVKYAS--NGREAVNIVQLAAGIALGEG-----------------RKRILAEDIEWVAE 330 (531)
T ss_pred HHHHHhhh--hHHHHHHHHHHHHHHHhhCC-----------------CcEEcHHHHHHHhC
Confidence 34444443 68999999998887665431 12588889888887
No 79
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=56.21 E-value=20 Score=26.77 Aligned_cols=49 Identities=24% Similarity=0.178 Sum_probs=26.5
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCC
Q psy5701 5 NLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPS 71 (125)
Q Consensus 5 l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps 71 (125)
+..++.++.|.... ...+|+.|+..|..+. ...|+.+|+.+|+..+..+
T Consensus 229 i~~~~~~~~Gd~R~-al~~l~~a~~~a~~~~-----------------~~~it~~~v~~a~~~~~~~ 277 (365)
T TIGR02928 229 CAALAAQEHGDARK-AIDLLRVAGEIAEREG-----------------AERVTEDHVEKAQEKIEKD 277 (365)
T ss_pred HHHHHHHhcCCHHH-HHHHHHHHHHHHHHcC-----------------CCCCCHHHHHHHHHHHHHH
Confidence 34455555564332 2345666665554331 1247778888777766433
No 80
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=55.67 E-value=31 Score=26.49 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=12.9
Q ss_pred CCCHHHHHHHHHHHHH
Q psy5701 14 GHVGADLASLCSEAAL 29 (125)
Q Consensus 14 GfsgaDL~~L~~~A~~ 29 (125)
||+|-|..+++..-..
T Consensus 137 GYVGEDVENillkLlq 152 (408)
T COG1219 137 GYVGEDVENILLKLLQ 152 (408)
T ss_pred cccchhHHHHHHHHHH
Confidence 9999999998765443
No 81
>PF15357 SEEK1: Psoriasis susceptibility 1 candidate 1
Probab=53.88 E-value=4.2 Score=25.81 Aligned_cols=19 Identities=16% Similarity=-0.052 Sum_probs=14.8
Q ss_pred HHHHHhhhhccChHHHhhC
Q psy5701 97 ELQELVQPSLWSPSKVLMN 115 (125)
Q Consensus 97 ~l~~~i~~P~~~p~~f~~~ 115 (125)
+-+|-|.-|--|||+|.+.
T Consensus 79 rtqedilvpsshpelfas~ 97 (149)
T PF15357_consen 79 RTQEDILVPSSHPELFASV 97 (149)
T ss_pred ccccceeccCCcHHHHhcc
Confidence 3456778899999999864
No 82
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=50.83 E-value=13 Score=28.76 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=16.9
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy5701 14 GHVGADLASLCSEAALQQIR 33 (125)
Q Consensus 14 GfsgaDL~~L~~~A~~~al~ 33 (125)
||+|.|+.+++|+-+-.|++
T Consensus 90 GYVGrDVesivRDLve~av~ 109 (444)
T COG1220 90 GYVGRDVESIIRDLVEIAVK 109 (444)
T ss_pred ccccccHHHHHHHHHHHHHH
Confidence 99999999999987766554
No 83
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=50.20 E-value=16 Score=26.06 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=27.3
Q ss_pred HHHHHHHhcccCCCchhhhhcccCCcccccccchHHHHHHHHHHhhhhccChHHHhh
Q psy5701 58 MENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLM 114 (125)
Q Consensus 58 ~~Df~~Al~~~~ps~~~~~~~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~ 114 (125)
...|...+...+=- ....+.+|+|+-| .+.+++|+.+|..|.-
T Consensus 3 d~~F~~~l~ds~VL----~~Kd~~~WnW~~I----------~~ll~gpl~n~krl~e 45 (226)
T PF14666_consen 3 DATFRQMLRDSKVL----TTKDFTKWNWDLI----------LELLEGPLLNPKRLDE 45 (226)
T ss_pred HHHHHHHHHhcCcc----ccCCCCccCHHHH----------HHHHhCCccccchhHH
Confidence 44566666664321 1246788999754 5667888887776654
No 84
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=50.18 E-value=19 Score=29.84 Aligned_cols=40 Identities=25% Similarity=0.188 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCC
Q psy5701 15 HVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPS 71 (125)
Q Consensus 15 fsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps 71 (125)
-++.||..|+++|+..|..+ +...|+.+|+++|+++.++.
T Consensus 363 l~~rdl~~lv~~A~~ia~~~-----------------~~~~I~ae~Ve~a~~~~~~~ 402 (647)
T COG1067 363 LRLRDLGNLVREAGDIAVSE-----------------GRKLITAEDVEEALQKRELR 402 (647)
T ss_pred cCHHHHHHHHHHhhHHHhcC-----------------CcccCcHHHHHHHHHhhhhH
Confidence 34566666666666555432 22358999999999986554
No 85
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=49.58 E-value=40 Score=18.66 Aligned_cols=45 Identities=18% Similarity=0.055 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHh
Q psy5701 16 VGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAM 65 (125)
Q Consensus 16 sgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al 65 (125)
+..|-..++..|+..-+........ ......+...|+.+|+..|+
T Consensus 21 vs~ea~~~i~~a~e~Fi~~l~~~A~-----~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 21 VSKEAVEAIAKAAEEFIQYLAKEAN-----EIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp E-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHTTSSEE-HHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHcCCCccCHHHHHHHC
Confidence 4556666666665544443322110 00011233468899988875
No 86
>PRK12860 transcriptional activator FlhC; Provisional
Probab=49.05 E-value=11 Score=26.14 Aligned_cols=15 Identities=0% Similarity=-0.230 Sum_probs=11.6
Q ss_pred HHHhhC-CCCCCCCCC
Q psy5701 110 SKVLMN-EHAMTHQVF 124 (125)
Q Consensus 110 ~~f~~~-gi~~p~Gvl 124 (125)
.+|+.+ |.+||||-|
T Consensus 42 ~Lyke~~G~SpPkG~l 57 (189)
T PRK12860 42 RLYKEVRGVSPPKGML 57 (189)
T ss_pred HHHHHHcCCCCCCCCC
Confidence 356666 999999976
No 87
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=47.51 E-value=22 Score=29.67 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=11.9
Q ss_pred ccccHHHHHHHhccc
Q psy5701 54 LAVTMENFRYAMGKS 68 (125)
Q Consensus 54 ~~i~~~Df~~Al~~~ 68 (125)
..|+.+|+..++...
T Consensus 415 ~~v~~~~i~~~i~~~ 429 (731)
T TIGR02639 415 ANVSVKDIENVVAKM 429 (731)
T ss_pred cccCHHHHHHHHHHH
Confidence 358889999888875
No 88
>KOG3423|consensus
Probab=47.47 E-value=35 Score=23.29 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=13.6
Q ss_pred hcccccHHHHHHHhccc
Q psy5701 52 ASLAVTMENFRYAMGKS 68 (125)
Q Consensus 52 ~~~~i~~~Df~~Al~~~ 68 (125)
....+|++|+..||..+
T Consensus 149 kK~tLtmeDL~~AL~Ey 165 (176)
T KOG3423|consen 149 KKYTLTMEDLSPALAEY 165 (176)
T ss_pred cceeeeHHHHHHHHHHh
Confidence 35678899999998876
No 89
>PRK12722 transcriptional activator FlhC; Provisional
Probab=46.96 E-value=13 Score=25.83 Aligned_cols=14 Identities=0% Similarity=-0.261 Sum_probs=11.9
Q ss_pred HHhhC-CCCCCCCCC
Q psy5701 111 KVLMN-EHAMTHQVF 124 (125)
Q Consensus 111 ~f~~~-gi~~p~Gvl 124 (125)
+|+.+ |.+||||-|
T Consensus 43 Lyke~~G~spPkG~l 57 (187)
T PRK12722 43 LYKELRGVSPPKGML 57 (187)
T ss_pred HHHHHcCCCCCCCCC
Confidence 77777 999999976
No 90
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=46.01 E-value=34 Score=19.63 Aligned_cols=14 Identities=0% Similarity=0.328 Sum_probs=11.0
Q ss_pred cccHHHHHHHhccc
Q psy5701 55 AVTMENFRYAMGKS 68 (125)
Q Consensus 55 ~i~~~Df~~Al~~~ 68 (125)
.|+.+|++-++++.
T Consensus 54 tv~~~Di~l~l~r~ 67 (72)
T cd07981 54 TLEVKDVQLHLERN 67 (72)
T ss_pred CCCHHHHHHHHHHh
Confidence 48889998888764
No 91
>KOG4603|consensus
Probab=45.99 E-value=29 Score=23.89 Aligned_cols=16 Identities=0% Similarity=-0.450 Sum_probs=13.6
Q ss_pred hhhccChHHHhhCCCC
Q psy5701 103 QPSLWSPSKVLMNEHA 118 (125)
Q Consensus 103 ~~P~~~p~~f~~~gi~ 118 (125)
..|.+-.++|+.+||.
T Consensus 185 ~~pk~ksel~eelGIE 200 (201)
T KOG4603|consen 185 GLPKKKSELYEELGIE 200 (201)
T ss_pred CCcchHHHHHHHhCcC
Confidence 4588999999999984
No 92
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=44.41 E-value=19 Score=28.96 Aligned_cols=43 Identities=16% Similarity=0.101 Sum_probs=34.0
Q ss_pred hcccCCcccccccchHHHHHHHHHHhhhh-ccChHHHhhCCCCCCCCCC
Q psy5701 77 IVEVPNITWEDIGGLEGVKRELQELVQPS-LWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 77 ~~~~~~v~w~digGl~~~k~~l~~~i~~P-~~~p~~f~~~gi~~p~Gvl 124 (125)
..+|..-+|+|+-|.+.+.+.|..++..- +.|.-+|. =||||.
T Consensus 7 ~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfs-----G~RGvG 50 (515)
T COG2812 7 ARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFS-----GPRGVG 50 (515)
T ss_pred HHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhc-----CCCCcC
Confidence 35677778999999999999999999885 66666664 377774
No 93
>COG3196 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.37 E-value=15 Score=24.61 Aligned_cols=17 Identities=18% Similarity=0.124 Sum_probs=14.2
Q ss_pred hHHHHHHHcCCCCHHHH
Q psy5701 4 YNLGIAAETHGHVGADL 20 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL 20 (125)
-++++.++|+||+|-.-
T Consensus 88 ~~~Ev~ERTPGYtgWQQ 104 (183)
T COG3196 88 VTEEVLERTPGYTGWQQ 104 (183)
T ss_pred HHHHHHhcCCCcchhHH
Confidence 36889999999999763
No 94
>KOG4589|consensus
Probab=41.75 E-value=9.7 Score=26.83 Aligned_cols=72 Identities=19% Similarity=0.119 Sum_probs=39.8
Q ss_pred HHHHHHHcCCCCHHH---HHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCchhhh
Q psy5701 5 NLGIAAETHGHVGAD---LASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRET 76 (125)
Q Consensus 5 l~~lA~~T~GfsgaD---L~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~~ 76 (125)
|++.|..+.|+.-.| +-.||++|...|+.-.......-..-...++.....-.+.++-.-.+.+||.++++.
T Consensus 141 lSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk~vKP~Asr~e 215 (232)
T KOG4589|consen 141 LSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNVKKVKPDASRDE 215 (232)
T ss_pred EeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhhcEeeCCcccccc
Confidence 344566777888877 456799988888765443221000000001111122334556666788899988753
No 95
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=40.93 E-value=68 Score=18.09 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=10.2
Q ss_pred ccccHHHHHHHhc
Q psy5701 54 LAVTMENFRYAMG 66 (125)
Q Consensus 54 ~~i~~~Df~~Al~ 66 (125)
..++.+|+..|++
T Consensus 53 ktlt~~DI~~Alk 65 (65)
T smart00803 53 TTLTTSDIDSALR 65 (65)
T ss_pred CeecHHHHHHHhC
Confidence 3588999988874
No 96
>PF03691 UPF0167: Uncharacterised protein family (UPF0167); InterPro: IPR005363 The proteins in this family are about 200 amino acids long and each contain 3 CXXC motifs.
Probab=40.60 E-value=16 Score=25.06 Aligned_cols=15 Identities=13% Similarity=-0.152 Sum_probs=12.6
Q ss_pred hHHHHHHHcCCCCHH
Q psy5701 4 YNLGIAAETHGHVGA 18 (125)
Q Consensus 4 ~l~~lA~~T~Gfsga 18 (125)
.+.+|..||+||.+-
T Consensus 84 ~~~El~~RTPGy~sW 98 (176)
T PF03691_consen 84 KLEELFHRTPGYSSW 98 (176)
T ss_pred HHHHHHhcCCCCccc
Confidence 478899999999864
No 97
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=37.83 E-value=46 Score=23.56 Aligned_cols=31 Identities=13% Similarity=0.092 Sum_probs=23.4
Q ss_pred cchHHHHHHHHHHhhhh-----ccChHHHhhCCCCC
Q psy5701 89 GGLEGVKRELQELVQPS-----LWSPSKVLMNEHAM 119 (125)
Q Consensus 89 gGl~~~k~~l~~~i~~P-----~~~p~~f~~~gi~~ 119 (125)
|++.+..+.+.+.+.-- --+|.+|++++|..
T Consensus 127 nsfk~Ta~~v~~L~~~~~~~gv~IDP~lF~~F~I~~ 162 (212)
T PRK13730 127 NDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRS 162 (212)
T ss_pred CCHHHHHHHHHHHhccCCCCceeECHHHHHhcCCcc
Confidence 56788888888766421 25999999999974
No 98
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=36.64 E-value=32 Score=19.20 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=19.5
Q ss_pred ccc-hHHHHHHHHHHhhhhccChHHHhhC
Q psy5701 88 IGG-LEGVKRELQELVQPSLWSPSKVLMN 115 (125)
Q Consensus 88 igG-l~~~k~~l~~~i~~P~~~p~~f~~~ 115 (125)
+|| ..-+-..+--++..|+.|||-|++.
T Consensus 11 ~ggfVg~iG~a~Ypi~~~Pmm~~eeYk~~ 39 (58)
T PF15061_consen 11 VGGFVGLIGAALYPIYFRPMMNPEEYKKE 39 (58)
T ss_pred HHHHHHHHHHHHhhhhcccccChHHHHHH
Confidence 344 2334456778888999999998753
No 99
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=36.56 E-value=51 Score=21.44 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=19.1
Q ss_pred chHHHHHHHHHHhhh-----hccChHHHhhCCCCC
Q psy5701 90 GLEGVKRELQELVQP-----SLWSPSKVLMNEHAM 119 (125)
Q Consensus 90 Gl~~~k~~l~~~i~~-----P~~~p~~f~~~gi~~ 119 (125)
++....+.+++.+.- =.-+|.+|++++|..
T Consensus 37 ~~~~T~~~i~~L~~~~~~~~v~IdP~lF~~f~I~~ 71 (130)
T TIGR02742 37 GFKATATRIQSLIKDGGKSGVQIDPQWFKQFDITA 71 (130)
T ss_pred CHHHHHHHHHHHHhcCCCCcEEEChHHHhhcCceE
Confidence 345555555554321 145999999999864
No 100
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=35.76 E-value=19 Score=28.08 Aligned_cols=40 Identities=5% Similarity=0.015 Sum_probs=27.4
Q ss_pred cccccc-cchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 83 ITWEDI-GGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 83 v~w~di-gGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
-+++++ ||+.-.+.-+.....-+-|+- ....|+++|+|+|
T Consensus 112 ~~f~~~~g~~~~~p~f~dk~~~hi~kn~--l~~~~ik~Plgll 152 (413)
T PLN00020 112 RSFDNLVGGYYIAPAFMDKVAVHIAKNF--LALPNIKVPLILG 152 (413)
T ss_pred cchhhhcCccccCHHHHHHHHHHHHhhh--hhccCCCCCeEEE
Confidence 356777 999888888776654443322 1238999999986
No 101
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=33.76 E-value=78 Score=18.85 Aligned_cols=33 Identities=9% Similarity=0.058 Sum_probs=24.0
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy5701 3 YYNLGIAAETHGHVGADLASLCSEAALQQIREKM 36 (125)
Q Consensus 3 ~~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~ 36 (125)
.+++.|++.+.+++-+|+..++..-. ..+.+.+
T Consensus 5 eli~~i~~~~~~~s~~~v~~vv~~~~-~~i~~~L 37 (94)
T TIGR00988 5 ELIERIATQQSHLPAKDVEDAVKTML-EHMASAL 37 (94)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH-HHHHHHH
Confidence 36788898899999999998877443 3444433
No 102
>PF12703 plasmid_Toxin: Toxin of toxin-antitoxin type 1 system; InterPro: IPR024640 This family is the toxin of a type 1 toxin-antitoxin system which is found in a relatively widespread range of bacterial species. The species distribution suggests frequent horizontal gene transfer. In a type 1 system, as characterised for the plasmid-encoded E coli hok/sok system, the toxin-encoding stable mRNA encodes a protein which rapidly leads to cell death unless the translation is suppressed by a short-lived small RNA. The plasmid-encoded module prevents the growth of plasmid-free offspring, thus ensuring the persistence of the plasmid in the population. Plasmid-free cells arising after cell-division will be killed because the stable mRNA toxin is present while the comparably unstable anti-toxin is rapidly degraded. Where the system is transcribed chromosomally, the mechanism is poorly understood [].
Probab=33.35 E-value=18 Score=20.88 Aligned_cols=15 Identities=40% Similarity=0.465 Sum_probs=12.6
Q ss_pred ccHHHHHHHhcccCC
Q psy5701 56 VTMENFRYAMGKSSP 70 (125)
Q Consensus 56 i~~~Df~~Al~~~~p 70 (125)
-|.+||.+|+..++-
T Consensus 57 AT~~DF~eAm~~Irq 71 (74)
T PF12703_consen 57 ATQEDFREAMSAIRQ 71 (74)
T ss_pred CcHHHHHHHHHHHHH
Confidence 789999999987753
No 103
>PF06820 Phage_fiber_C: Putative prophage tail fibre C-terminus; InterPro: IPR009640 This entry represents the C terminus of phage 933W tail fibre protein. This domain is found together with conserved RLGP motif. The characteristics of the protein distribution suggest prophage matches.
Probab=33.32 E-value=12 Score=20.83 Aligned_cols=14 Identities=36% Similarity=0.798 Sum_probs=10.4
Q ss_pred ccCCcccccccchH
Q psy5701 79 EVPNITWEDIGGLE 92 (125)
Q Consensus 79 ~~~~v~w~digGl~ 92 (125)
...+=.|.||+||+
T Consensus 51 ~fgDGpWqdikgld 64 (64)
T PF06820_consen 51 RFGDGPWQDIKGLD 64 (64)
T ss_pred EeccCChhhccCCC
Confidence 34556799999974
No 104
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=32.03 E-value=23 Score=25.79 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=18.8
Q ss_pred ccccccchHHHHHHHHHHhhhh
Q psy5701 84 TWEDIGGLEGVKRELQELVQPS 105 (125)
Q Consensus 84 ~w~digGl~~~k~~l~~~i~~P 105 (125)
+|+|+-|.+++++.|...+...
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~ 23 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAA 23 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHH
Confidence 6899999999999999888653
No 105
>cd00591 HU_IHF Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and higher-order nucleoprotein complex assembly. The dimer subunits associate to form a compact globular core from which two beta ribbon arms (one from each subunit) protrude. The beta arms track and bind the DNA minor groove. Despite sequence and structural similarity, IHF and HU can be distinguished by their different DNA substrate preferences.
Probab=31.92 E-value=1.1e+02 Score=17.70 Aligned_cols=30 Identities=23% Similarity=0.103 Sum_probs=21.8
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREK 35 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~ 35 (125)
+...||.+| |++.+|+..++..-.. .+...
T Consensus 5 l~~~ia~~~-~~~~~~v~~vl~~~~~-~i~~~ 34 (87)
T cd00591 5 LIEAIAEKT-GLSKKDAEAAVDAFLD-VITEA 34 (87)
T ss_pred HHHHHHHHh-CcCHHHHHHHHHHHHH-HHHHH
Confidence 567788888 9999999999775443 34333
No 106
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=29.80 E-value=1.2e+02 Score=17.72 Aligned_cols=14 Identities=7% Similarity=-0.078 Sum_probs=9.0
Q ss_pred hHHHHHHHcCCCCH
Q psy5701 4 YNLGIAAETHGHVG 17 (125)
Q Consensus 4 ~l~~lA~~T~Gfsg 17 (125)
++.++++.-.+..+
T Consensus 7 ~~d~~~~~~~~~~~ 20 (79)
T PF04380_consen 7 IFDDLAKQISEALP 20 (79)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666666655
No 107
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=29.60 E-value=2.2e+02 Score=20.60 Aligned_cols=89 Identities=13% Similarity=0.022 Sum_probs=50.6
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCchhhhhcccCCcccccccc
Q psy5701 11 ETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGG 90 (125)
Q Consensus 11 ~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~~~~~~~~v~w~digG 90 (125)
-++||...-|...+-..+...+.+. ..+.+|+..|++.--. .......|.|..|
T Consensus 186 d~pgfi~nRi~~~~~~ea~~l~~~g-------------------~a~~~~iD~a~~~~~g-------~~~Gp~~~~D~~G 239 (287)
T PRK08293 186 EQPGYILNSLLVPFLSAALALWAKG-------------------VADPETIDKTWMIATG-------APMGPFGILDIVG 239 (287)
T ss_pred CCCCHhHHHHHHHHHHHHHHHHHcC-------------------CCCHHHHHHHHHhccC-------CCcCHHHHHHHhc
Confidence 4667777666555443333333221 2457788887643211 1134578899999
Q ss_pred hHHHHHHHHHHhhh---hc-c-ChHHHh------hCCCCCCCCCCC
Q psy5701 91 LEGVKRELQELVQP---SL-W-SPSKVL------MNEHAMTHQVFD 125 (125)
Q Consensus 91 l~~~k~~l~~~i~~---P~-~-~p~~f~------~~gi~~p~Gvl~ 125 (125)
++.+...+...-.- |. . .|++++ ++|.+.-+|..+
T Consensus 240 ld~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~ 285 (287)
T PRK08293 240 LDTAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYN 285 (287)
T ss_pred hHHHHHHHHHHHHHhCCcccccchHHHHHHHHCCCCcccCCCcccc
Confidence 99888777654331 21 1 244443 377777777643
No 108
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=29.20 E-value=70 Score=20.05 Aligned_cols=14 Identities=7% Similarity=-0.080 Sum_probs=11.9
Q ss_pred ccChHHHhhCCCCC
Q psy5701 106 LWSPSKVLMNEHAM 119 (125)
Q Consensus 106 ~~~p~~f~~~gi~~ 119 (125)
.-+|.+|++++|..
T Consensus 58 ~IdP~~F~~y~I~~ 71 (113)
T PF09673_consen 58 QIDPRLFRQYNITA 71 (113)
T ss_pred eEChhHHhhCCceE
Confidence 67999999999863
No 109
>PF05280 FlhC: Flagellar transcriptional activator (FlhC); InterPro: IPR007944 This family consists of several bacterial flagellar transcriptional activator (FlhC) proteins. FlhC combines with FlhD to form a regulatory complex in Escherichia coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator [].; GO: 0003677 DNA binding, 0030092 regulation of flagellum assembly, 0045893 positive regulation of transcription, DNA-dependent; PDB: 2AVU_E.
Probab=29.06 E-value=23 Score=24.30 Aligned_cols=9 Identities=0% Similarity=-0.027 Sum_probs=2.7
Q ss_pred CCCCCCCCC
Q psy5701 116 EHAMTHQVF 124 (125)
Q Consensus 116 gi~~p~Gvl 124 (125)
|.+||||-|
T Consensus 49 G~sppkG~l 57 (175)
T PF05280_consen 49 GVSPPKGML 57 (175)
T ss_dssp SS----S--
T ss_pred CCCCCCCCC
Confidence 899999965
No 110
>PF08681 DUF1778: Protein of unknown function (DUF1778); InterPro: IPR014795 This entry is represented by Vibrio phage ICP1, Orf50. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of uncharacterised proteins. The structure of one of the hypothetical proteins in this family has been solved and it forms a helix structure which may form interactions with DNA. ; PDB: 1Y9B_A.
Probab=28.78 E-value=41 Score=19.73 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=22.5
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy5701 6 LGIAAETHGHVGADLASLCSEAALQQIREKMD 37 (125)
Q Consensus 6 ~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~ 37 (125)
..+-++...+.|.++...+.+|+.....+.+.
T Consensus 11 k~li~~AA~~~G~sls~Fi~~aa~~~A~~~i~ 42 (80)
T PF08681_consen 11 KELIERAAALSGVSLSDFILSAALEAAEEVIE 42 (80)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 34455555677789999999999887777554
No 111
>PF07115 DUF1371: Protein of unknown function (DUF1371); InterPro: IPR009802 This entry represents a family of hypothetical proteins of around 110 residues in length found in Borrelia species. The function of this family is unknown.
Probab=28.21 E-value=38 Score=21.36 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=11.2
Q ss_pred ccchHHHHHHHHH
Q psy5701 88 IGGLEGVKRELQE 100 (125)
Q Consensus 88 igGl~~~k~~l~~ 100 (125)
|-|+++.|++|..
T Consensus 20 Vd~IdEqKQ~Lfi 32 (110)
T PF07115_consen 20 VDGIDEQKQRLFI 32 (110)
T ss_pred hhCHHHHHhhhhe
Confidence 7899999998873
No 112
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=28.05 E-value=81 Score=19.15 Aligned_cols=15 Identities=20% Similarity=0.443 Sum_probs=11.2
Q ss_pred cccHHHHHHHhcccC
Q psy5701 55 AVTMENFRYAMGKSS 69 (125)
Q Consensus 55 ~i~~~Df~~Al~~~~ 69 (125)
.++.+||.-++.+=.
T Consensus 54 k~~~eD~~FliR~D~ 68 (92)
T cd07978 54 KVKVEDLIFLLRKDP 68 (92)
T ss_pred CCCHHHHHHHHhcCH
Confidence 368899998886643
No 113
>PRK00199 ihfB integration host factor subunit beta; Reviewed
Probab=26.79 E-value=1.5e+02 Score=17.67 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=23.9
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q psy5701 3 YYNLGIAAETHGHVGADLASLCSEAALQQIREK 35 (125)
Q Consensus 3 ~~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~ 35 (125)
.|+..||++..|++-+|+..++.... ..+.+.
T Consensus 5 eli~~ia~~~~~~s~~~~~~vv~~~~-~~i~~~ 36 (94)
T PRK00199 5 ELIERLAARNPHLSAKDVENAVKEIL-EEMSDA 36 (94)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH-HHHHHH
Confidence 46788999889999999999987544 334343
No 114
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=26.24 E-value=50 Score=18.64 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=11.3
Q ss_pred CCCchhhhhcccCCcccccccc
Q psy5701 69 SPSALRETIVEVPNITWEDIGG 90 (125)
Q Consensus 69 ~ps~~~~~~~~~~~v~w~digG 90 (125)
+-+-.+..+..... +|+.+||
T Consensus 43 kl~kl~~IFlT~~~-~w~~~GG 63 (63)
T PF13691_consen 43 KLSKLNDIFLTGLS-SWENIGG 63 (63)
T ss_pred CccccceEEECCCC-cccccCC
Confidence 33333344433333 5999998
No 115
>KOG4009|consensus
Probab=26.19 E-value=45 Score=22.07 Aligned_cols=18 Identities=17% Similarity=0.621 Sum_probs=15.4
Q ss_pred cccccccchHHHHHHHHH
Q psy5701 83 ITWEDIGGLEGVKRELQE 100 (125)
Q Consensus 83 v~w~digGl~~~k~~l~~ 100 (125)
+.|.|+||+.++++.+..
T Consensus 117 ~kygdLGgys~ar~aymK 134 (156)
T KOG4009|consen 117 VKYGDLGGYSSARKAYMK 134 (156)
T ss_pred hhhccccccchHHHHHHH
Confidence 679999999999987753
No 116
>COG4840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.10 E-value=1.4e+02 Score=17.22 Aligned_cols=25 Identities=4% Similarity=0.139 Sum_probs=18.2
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHH
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAA 28 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~ 28 (125)
++-++.++-+.||.++..++..+-+
T Consensus 43 diy~mvkkkenfSpsEmqaiA~eL~ 67 (71)
T COG4840 43 DIYDMVKKKENFSPSEMQAIADELG 67 (71)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHH
Confidence 4556677888888888888766543
No 117
>PHA02577 2 DNA end protector protein; Provisional
Probab=25.32 E-value=44 Score=22.93 Aligned_cols=46 Identities=17% Similarity=0.261 Sum_probs=27.8
Q ss_pred HHHHHHHhcccCCCchhhhhcccCCcccccccchHHHHHHHHHHhh
Q psy5701 58 MENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQ 103 (125)
Q Consensus 58 ~~Df~~Al~~~~ps~~~~~~~~~~~v~w~digGl~~~k~~l~~~i~ 103 (125)
...|.++|-+--.|..+-...+.-+++|++|-|+.+..+.++..+.
T Consensus 94 R~~fle~LlK~y~st~~~tnkt~LkI~W~~vKg~~ga~~mikaYlp 139 (181)
T PHA02577 94 RQLFLEELLKQYASTPTLTNKTRLKINWSNVKGMRGADHMIKAYLP 139 (181)
T ss_pred HHHHHHHHHHhhccCcccCCCceEEeeHHHhhcccCHHHHHHHHhh
Confidence 3455555544222222223334456899999999998888876553
No 118
>TIGR01201 HU_rel DNA-binding protein, histone-like, putative. This model describes a set of proteins related to but longer than DNA-binding protein HU. Its distinctive domain architecture compared to HU and related histone-like DNA-binding proteins justifies the designation as superfamily. Members include, so far, one from Bacteroides fragilis, a gut bacterium, and ten from Porphyromonas gingivalis, an oral anaerobe.
Probab=24.45 E-value=2.1e+02 Score=18.72 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=22.6
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMD 37 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~ 37 (125)
+.+.||++| |++-+|+.+++.... ..+.+.+.
T Consensus 36 l~~~Ia~~s-~~s~~dv~~vl~~l~-~~i~~~L~ 67 (145)
T TIGR01201 36 IAELIAEES-SLSPGDVKGIIDRLA-YVLRRELA 67 (145)
T ss_pred HHHHHHHHh-CCCHHHHHHHHHHHH-HHHHHHHh
Confidence 567788876 799999999887554 34444443
No 119
>PF09524 Phg_2220_C: Conserved phage C-terminus (Phg_2220_C); InterPro: IPR011741 This entry is represented by the C-terminal domain of Bacteriophage r1t, Orf11. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents the conserved C-terminal domain of a family of proteins found exclusively in bacteriophage and in bacterial prophage regions. The functions of this domain and the proteins containing it are unknown.
Probab=24.02 E-value=1.4e+02 Score=17.40 Aligned_cols=22 Identities=14% Similarity=0.075 Sum_probs=17.6
Q ss_pred HHHHcCCCCHHHHHHHHHHHHH
Q psy5701 8 IAAETHGHVGADLASLCSEAAL 29 (125)
Q Consensus 8 lA~~T~GfsgaDL~~L~~~A~~ 29 (125)
-|+.-+||+-.|+..++...+.
T Consensus 25 ~aRl~eG~t~edf~~VID~k~~ 46 (74)
T PF09524_consen 25 KARLNEGYTLEDFKKVIDNKVA 46 (74)
T ss_pred HHHHHCCCCHHHHHHHHHHHHH
Confidence 3677789999999999886554
No 120
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=23.37 E-value=75 Score=18.53 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=14.6
Q ss_pred cCCCCHHHHHHHHHHHH
Q psy5701 12 THGHVGADLASLCSEAA 28 (125)
Q Consensus 12 T~GfsgaDL~~L~~~A~ 28 (125)
..||+-.+|..|||...
T Consensus 36 ~aGYTi~El~~L~RSsv 52 (73)
T PF08620_consen 36 AAGYTIQELFHLSRSSV 52 (73)
T ss_pred cCCcCHHHHHHHHhcCc
Confidence 46999999999999654
No 121
>COG4371 Predicted membrane protein [Function unknown]
Probab=23.03 E-value=1.2e+02 Score=22.36 Aligned_cols=31 Identities=29% Similarity=0.236 Sum_probs=26.9
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIRE 34 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~ 34 (125)
-|++||+..+-=+.+-...+++||++..+|.
T Consensus 163 eL~~iA~~aDt~t~~Gr~~vlQEA~LalLRH 193 (334)
T COG4371 163 ELQRIAQQADTDTNAGRARVLQEAALALLRH 193 (334)
T ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHHHcC
Confidence 3788999988888889999999999988875
No 122
>TIGR02220 phg_TIGR02220 phage conserved hypothetical protein, C-terminal domain. This model represents the conserved C-terminal domain of a family of proteins found exclusively in bacteriophage and in bacterial prophage regions. The functions of this domain and the proteins containing it are unknown.
Probab=22.78 E-value=97 Score=18.25 Aligned_cols=18 Identities=17% Similarity=0.075 Sum_probs=15.3
Q ss_pred HHHHcCCCCHHHHHHHHH
Q psy5701 8 IAAETHGHVGADLASLCS 25 (125)
Q Consensus 8 lA~~T~GfsgaDL~~L~~ 25 (125)
-|+..+||+-.|++.++.
T Consensus 28 ~aR~~eg~~~~dfk~VId 45 (77)
T TIGR02220 28 KARWNEGYTLEDFKKVID 45 (77)
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 367889999999999985
No 123
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=21.45 E-value=27 Score=21.71 Aligned_cols=15 Identities=13% Similarity=-0.062 Sum_probs=11.3
Q ss_pred HhhhhccChHHHhhC
Q psy5701 101 LVQPSLWSPSKVLMN 115 (125)
Q Consensus 101 ~i~~P~~~p~~f~~~ 115 (125)
.+++|+.||++-..+
T Consensus 90 ~Le~Pl~Y~qLt~~L 104 (109)
T PF06490_consen 90 ELEEPLNYPQLTDAL 104 (109)
T ss_pred ecCCCCCHHHHHHHH
Confidence 368999999986543
No 124
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=21.39 E-value=51 Score=19.99 Aligned_cols=18 Identities=11% Similarity=0.337 Sum_probs=0.0
Q ss_pred cccHHHHHHHhcccCCCc
Q psy5701 55 AVTMENFRYAMGKSSPSA 72 (125)
Q Consensus 55 ~i~~~Df~~Al~~~~ps~ 72 (125)
.|+.+||.-++.+=+.-.
T Consensus 54 ~i~~eDl~F~lR~D~~Kl 71 (93)
T PF02269_consen 54 KIKVEDLLFLLRKDPKKL 71 (93)
T ss_dssp ------------------
T ss_pred cCcHHHHHHHHhcCHHHH
Confidence 578899988888754433
No 125
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=21.29 E-value=1.8e+02 Score=21.64 Aligned_cols=33 Identities=21% Similarity=0.132 Sum_probs=28.7
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q psy5701 3 YYNLGIAAETHGHVGADLASLCSEAALQQIREK 35 (125)
Q Consensus 3 ~~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~ 35 (125)
-+|++||+..+-=+..-|..+.+|+++.-+|+.
T Consensus 122 ~~L~~iA~~adt~s~~Gl~~~L~E~~l~LLR~~ 154 (289)
T PF07466_consen 122 RDLNRIAETADTSSPEGLARVLQETTLALLRHP 154 (289)
T ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCc
Confidence 478999999999999999999999998777653
No 126
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=21.20 E-value=1.6e+02 Score=24.31 Aligned_cols=13 Identities=31% Similarity=0.138 Sum_probs=9.6
Q ss_pred ccccHHHHHHHhc
Q psy5701 54 LAVTMENFRYAMG 66 (125)
Q Consensus 54 ~~i~~~Df~~Al~ 66 (125)
..|+.+|+++|++
T Consensus 377 ~~I~~ehV~~Ai~ 389 (608)
T TIGR00764 377 VYVTAEHVLKAKK 389 (608)
T ss_pred ceecHHHHHHHHH
Confidence 3588888887755
No 127
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=21.06 E-value=11 Score=14.34 Aligned_cols=6 Identities=33% Similarity=0.645 Sum_probs=4.3
Q ss_pred CCCCHH
Q psy5701 13 HGHVGA 18 (125)
Q Consensus 13 ~Gfsga 18 (125)
+||+|.
T Consensus 6 ~G~~G~ 11 (13)
T PF12661_consen 6 PGWTGP 11 (13)
T ss_dssp TTEETT
T ss_pred CCCcCC
Confidence 578775
No 128
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=20.72 E-value=1.7e+02 Score=17.57 Aligned_cols=32 Identities=16% Similarity=0.093 Sum_probs=22.4
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy5701 3 YYNLGIAAETHGHVGADLASLCSEAALQQIREKM 36 (125)
Q Consensus 3 ~~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~ 36 (125)
.+++.||.++ |++-+|+..++..-. ..+.+.+
T Consensus 6 eli~~ia~~~-~~s~~~v~~vv~~~~-~~i~~~L 37 (96)
T TIGR00987 6 EMSEYLFDEL-GLSKREAKELVELFF-EEIRRAL 37 (96)
T ss_pred HHHHHHHHHh-CcCHHHHHHHHHHHH-HHHHHHH
Confidence 3677888876 799999999877444 3444443
No 129
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=20.67 E-value=58 Score=18.09 Aligned_cols=18 Identities=22% Similarity=0.124 Sum_probs=13.7
Q ss_pred HHHHhhhhccChHHHhhC
Q psy5701 98 LQELVQPSLWSPSKVLMN 115 (125)
Q Consensus 98 l~~~i~~P~~~p~~f~~~ 115 (125)
+++.|.+=++||+..+++
T Consensus 2 ~Q~iV~YLv~nPevl~kl 19 (57)
T PF05952_consen 2 KQEIVNYLVQNPEVLEKL 19 (57)
T ss_pred hHHHHHHHHHChHHHHHH
Confidence 467778878999988764
No 130
>PF12431 CitT: Transcriptional regulator
Probab=20.46 E-value=49 Score=15.65 Aligned_cols=6 Identities=0% Similarity=0.279 Sum_probs=3.3
Q ss_pred CCCCCC
Q psy5701 118 AMTHQV 123 (125)
Q Consensus 118 ~~p~Gv 123 (125)
+.||||
T Consensus 22 ~LPKGI 27 (30)
T PF12431_consen 22 RLPKGI 27 (30)
T ss_pred CCCCCc
Confidence 356664
Done!