Query psy5701
Match_columns 125
No_of_seqs 187 out of 1451
Neff 8.9
Searched_HMMs 29240
Date Sat Aug 17 00:28:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5701.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5701hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 99.9 2.1E-27 7E-32 190.9 9.1 121 4-124 395-515 (806)
2 1ypw_A Transitional endoplasmi 99.6 1.3E-16 4.3E-21 129.0 6.4 121 4-124 395-515 (806)
3 4b4t_J 26S protease regulatory 99.6 8E-17 2.7E-21 121.1 3.7 57 68-124 130-186 (405)
4 3hu3_A Transitional endoplasmi 99.6 1.7E-16 5.8E-21 122.1 5.4 91 4-94 395-485 (489)
5 3vlf_B 26S protease regulatory 99.6 6.4E-16 2.2E-20 93.6 5.8 62 3-81 23-85 (88)
6 3aji_B S6C, proteasome (prosom 99.6 5.3E-16 1.8E-20 92.9 2.4 54 3-73 23-76 (83)
7 2krk_A 26S protease regulatory 99.6 1.7E-15 5.8E-20 91.4 3.9 52 3-71 33-84 (86)
8 4b4t_L 26S protease subunit RP 99.5 3.2E-15 1.1E-19 113.6 3.5 56 69-124 164-219 (437)
9 4b4t_I 26S protease regulatory 99.5 6.8E-15 2.3E-19 111.3 3.4 55 70-124 166-220 (437)
10 2dzn_B 26S protease regulatory 99.5 7.2E-15 2.5E-19 87.8 2.4 55 4-75 21-76 (82)
11 4b4t_H 26S protease regulatory 99.5 7.9E-15 2.7E-19 111.8 3.1 48 77-124 200-247 (467)
12 3kw6_A 26S protease regulatory 99.5 3.7E-14 1.3E-18 83.9 4.6 51 3-70 25-75 (78)
13 4b4t_M 26S protease regulatory 99.5 1.4E-14 4.8E-19 110.0 3.3 53 72-124 167-219 (434)
14 4b4t_K 26S protease regulatory 99.4 3.2E-14 1.1E-18 107.9 3.5 49 76-124 162-210 (428)
15 1xwi_A SKD1 protein; VPS4B, AA 99.3 3.5E-12 1.2E-16 93.3 4.9 79 4-82 203-313 (322)
16 3cf2_A TER ATPase, transitiona 99.2 1E-12 3.5E-17 106.0 1.0 82 3-84 670-759 (806)
17 2qp9_X Vacuolar protein sortin 99.2 1.4E-11 4.6E-16 91.2 5.4 79 4-82 241-345 (355)
18 2x8a_A Nuclear valosin-contain 99.2 2.7E-11 9.1E-16 86.9 5.8 66 4-75 204-271 (274)
19 4b4t_M 26S protease regulatory 99.2 4.3E-11 1.5E-15 90.8 6.6 55 4-75 375-429 (434)
20 2zan_A Vacuolar protein sortin 99.2 2.1E-11 7.2E-16 92.7 4.5 79 4-82 325-435 (444)
21 4b4t_L 26S protease subunit RP 99.1 3.1E-11 1.1E-15 91.7 4.4 61 3-80 374-434 (437)
22 4b4t_I 26S protease regulatory 99.1 2.9E-11 1E-15 91.5 4.0 56 4-76 376-431 (437)
23 3eie_A Vacuolar protein sortin 99.1 2.2E-11 7.6E-16 88.8 2.8 80 4-83 208-313 (322)
24 4b4t_J 26S protease regulatory 99.1 4.1E-11 1.4E-15 90.2 3.9 52 4-72 342-393 (405)
25 4b4t_K 26S protease regulatory 99.0 3.8E-10 1.3E-14 85.6 6.5 54 4-74 367-421 (428)
26 4b4t_H 26S protease regulatory 99.0 1.5E-10 5.1E-15 88.4 4.2 52 4-72 403-454 (467)
27 2x8a_A Nuclear valosin-contain 99.0 1.6E-10 5.4E-15 82.8 2.6 46 79-124 3-48 (274)
28 3cf0_A Transitional endoplasmi 98.9 3.7E-10 1.3E-14 81.6 2.9 52 73-124 2-53 (301)
29 3cf0_A Transitional endoplasmi 98.9 1.6E-09 5.6E-14 78.2 5.3 77 4-80 209-293 (301)
30 1xwi_A SKD1 protein; VPS4B, AA 98.8 1.4E-09 4.8E-14 79.4 2.6 46 78-124 4-49 (322)
31 3b9p_A CG5977-PA, isoform A; A 98.7 6.6E-09 2.2E-13 74.4 3.5 80 4-90 213-292 (297)
32 2dhr_A FTSH; AAA+ protein, hex 98.7 1.7E-09 5.8E-14 83.4 -0.3 95 4-124 224-322 (499)
33 2ce7_A Cell division protein F 98.7 4E-09 1.4E-13 81.0 1.7 91 4-120 209-303 (476)
34 3d8b_A Fidgetin-like protein 1 98.7 8.9E-09 3.1E-13 76.1 3.0 80 4-90 275-354 (357)
35 2qp9_X Vacuolar protein sortin 98.6 1.6E-08 5.6E-13 74.7 2.3 59 65-124 30-88 (355)
36 3eie_A Vacuolar protein sortin 98.5 3.7E-08 1.3E-12 71.7 2.3 49 75-124 7-55 (322)
37 2zan_A Vacuolar protein sortin 98.4 7E-08 2.4E-12 73.3 2.0 50 74-124 122-171 (444)
38 3h4m_A Proteasome-activating n 98.2 7.6E-07 2.6E-11 63.1 3.2 47 78-124 9-55 (285)
39 3d8b_A Fidgetin-like protein 1 98.1 4.3E-07 1.5E-11 67.0 0.6 64 60-124 54-121 (357)
40 1ixz_A ATP-dependent metallopr 98.1 5.8E-06 2E-10 57.8 5.8 46 4-66 209-254 (254)
41 3b9p_A CG5977-PA, isoform A; A 98.1 1.2E-06 4.1E-11 62.5 2.3 50 74-124 9-58 (297)
42 3hu3_A Transitional endoplasmi 98.1 1.6E-06 5.3E-11 66.8 3.0 46 79-124 197-242 (489)
43 1ypw_A Transitional endoplasmi 98.0 1.1E-06 3.9E-11 71.2 1.4 46 79-124 197-242 (806)
44 2qz4_A Paraplegin; AAA+, SPG7, 98.0 2E-06 6.9E-11 60.0 2.2 43 81-124 1-43 (262)
45 3h4m_A Proteasome-activating n 98.0 4.1E-06 1.4E-10 59.3 3.8 51 4-71 211-261 (285)
46 3cmw_A Protein RECA, recombina 98.0 1.3E-07 4.5E-12 81.3 -4.7 92 14-122 965-1082(1706)
47 3vfd_A Spastin; ATPase, microt 98.0 2.4E-06 8.1E-11 63.6 2.3 72 4-80 306-377 (389)
48 1lv7_A FTSH; alpha/beta domain 97.9 1.8E-05 6.2E-10 55.3 5.7 49 5-70 206-254 (257)
49 1iy2_A ATP-dependent metallopr 97.9 2.2E-05 7.6E-10 55.6 5.8 46 4-66 233-278 (278)
50 1lv7_A FTSH; alpha/beta domain 97.9 4.8E-06 1.7E-10 58.3 2.2 46 78-124 4-49 (257)
51 3vfd_A Spastin; ATPase, microt 97.8 7.3E-06 2.5E-10 60.9 2.8 63 61-124 90-152 (389)
52 2ce7_A Cell division protein F 97.8 1.3E-05 4.4E-10 61.6 3.9 44 80-124 10-53 (476)
53 2qz4_A Paraplegin; AAA+, SPG7, 97.8 3.5E-06 1.2E-10 58.8 0.3 53 4-73 202-254 (262)
54 2r62_A Cell division protease 97.8 9.4E-06 3.2E-10 57.0 2.3 46 78-124 3-48 (268)
55 2r62_A Cell division protease 97.6 6.8E-06 2.3E-10 57.7 -0.8 54 5-75 207-260 (268)
56 1ixz_A ATP-dependent metallopr 97.5 7.8E-05 2.7E-09 52.0 4.0 48 76-124 6-53 (254)
57 2dhr_A FTSH; AAA+ protein, hex 97.4 7.2E-05 2.5E-09 57.7 2.8 43 81-124 26-68 (499)
58 1iy2_A ATP-dependent metallopr 97.0 0.00052 1.8E-08 48.5 3.9 46 78-124 32-77 (278)
59 1g41_A Heat shock protein HSLU 93.4 0.025 8.4E-07 43.1 1.3 39 86-124 15-54 (444)
60 3syl_A Protein CBBX; photosynt 89.6 0.2 6.8E-06 35.2 2.5 37 85-122 30-66 (309)
61 3uk6_A RUVB-like 2; hexameric 88.4 0.42 1.5E-05 34.4 3.7 48 4-68 283-330 (368)
62 3cmu_A Protein RECA, recombina 83.7 0.023 8E-07 50.3 -5.9 102 12-123 614-735 (2050)
63 2c9o_A RUVB-like 1; hexameric 80.7 1 3.5E-05 33.9 2.8 37 80-124 31-67 (456)
64 1sxj_A Activator 1 95 kDa subu 79.0 0.77 2.6E-05 35.1 1.6 48 77-124 30-81 (516)
65 2c9o_A RUVB-like 1; hexameric 76.6 0.33 1.1E-05 36.5 -1.0 22 3-26 241-262 (456)
66 3bos_A Putative DNA replicatio 74.9 11 0.00037 24.7 6.4 43 5-66 199-241 (242)
67 1r6b_X CLPA protein; AAA+, N-t 63.3 3.3 0.00011 33.1 2.0 16 54-69 419-434 (758)
68 1b67_A Protein (histone HMFA); 63.2 13 0.00046 20.1 4.0 18 52-69 51-68 (68)
69 1g8p_A Magnesium-chelatase 38 58.1 8.5 0.00029 27.1 3.2 42 62-105 2-43 (350)
70 1njg_A DNA polymerase III subu 56.3 6.8 0.00023 25.4 2.3 40 5-66 210-249 (250)
71 3m6a_A ATP-dependent protease 52.8 7.6 0.00026 29.9 2.3 18 53-70 326-343 (543)
72 2xde_A GAG polyprotein, HIV-1 49.2 9.7 0.00033 24.4 2.0 24 87-110 59-87 (145)
73 3osj_A Phycobilisome LCM core- 47.0 24 0.00084 22.6 3.7 58 11-68 16-73 (147)
74 3qwz_A Transitional endoplasmi 45.5 5 0.00017 27.3 0.3 12 79-90 200-211 (211)
75 1fnn_A CDC6P, cell division co 41.6 63 0.0021 22.7 5.7 51 4-71 219-277 (389)
76 1in4_A RUVB, holliday junction 40.2 51 0.0018 23.3 5.0 46 5-68 205-250 (334)
77 2z4s_A Chromosomal replication 40.0 77 0.0026 23.5 6.1 47 5-70 288-334 (440)
78 4dra_E Centromere protein X; D 39.5 54 0.0019 18.8 4.5 34 20-66 45-78 (84)
79 3b0b_C CENP-X, centromere prot 36.7 60 0.002 18.5 4.3 34 20-66 41-74 (81)
80 1g6u_A Domain swapped dimer; d 35.6 37 0.0013 16.6 2.5 18 9-26 11-28 (48)
81 2hue_C Histone H4; mini beta s 35.0 57 0.0019 18.5 3.7 16 53-68 60-75 (84)
82 3pru_C Phycobilisome 32.1 kDa 34.6 61 0.0021 20.9 4.1 57 11-68 11-67 (154)
83 3t15_A Ribulose bisphosphate c 33.4 16 0.00056 25.5 1.4 20 4-23 204-223 (293)
84 1id3_B Histone H4; nucleosome 33.2 53 0.0018 19.4 3.5 16 53-68 78-93 (102)
85 3pfi_A Holliday junction ATP-d 32.5 14 0.00049 25.9 1.0 29 78-106 21-49 (338)
86 1ofh_A ATP-dependent HSL prote 31.6 90 0.0031 21.1 5.0 45 14-69 256-300 (310)
87 1ku5_A HPHA, archaeal histon; 29.7 65 0.0022 17.4 3.3 15 52-66 55-69 (70)
88 1g8p_A Magnesium-chelatase 38 29.5 1.3E+02 0.0044 20.8 5.6 37 16-69 287-323 (350)
89 4g6v_B CDII; tRNAse, toxin, im 29.3 15 0.00052 21.8 0.5 19 106-125 25-44 (111)
90 1owf_B IHF-beta, integration H 29.2 83 0.0028 17.9 5.2 35 3-38 5-39 (94)
91 2i7u_A Four-alpha-helix bundle 28.2 34 0.0012 17.7 1.7 19 13-31 30-48 (62)
92 3b0c_W CENP-W, centromere prot 27.4 83 0.0028 17.3 3.7 17 52-68 54-70 (76)
93 3m6a_A ATP-dependent protease 27.2 27 0.00094 26.8 1.8 31 77-107 72-102 (543)
94 2k1v_A Insulin-like peptide IN 26.7 7.5 0.00026 17.3 -0.8 15 11-25 8-22 (26)
95 2v1u_A Cell division control p 26.1 1E+02 0.0034 21.6 4.5 46 5-68 228-276 (387)
96 2qby_A CDC6 homolog 1, cell di 25.4 45 0.0015 23.3 2.6 15 55-69 259-273 (386)
97 3nph_B Phycobilisome 32.1 kDa 22.0 1.6E+02 0.0054 18.8 4.3 57 11-68 6-62 (148)
98 1b8z_A Protein (histonelike pr 21.8 1.2E+02 0.004 17.0 4.9 34 3-38 5-38 (90)
99 1tqe_X Histone deacetylase 9; 20.4 44 0.0015 14.7 1.0 13 92-104 9-21 (26)
100 3eea_A GAF domain/HD domain pr 20.2 1.2E+02 0.0039 19.5 3.3 20 14-33 134-153 (162)
101 2e8m_A Epidermal growth factor 20.1 37 0.0013 20.2 1.0 24 5-28 49-72 (99)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.94 E-value=2.1e-27 Score=190.85 Aligned_cols=121 Identities=65% Similarity=0.943 Sum_probs=110.7
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCchhhhhcccCCc
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRETIVEVPNI 83 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~~~~~~~~v 83 (125)
++..||.+|+||+|+||.+||++|++.|+++.....+........+......++.+||..|++.++|+..++.....|++
T Consensus 395 dl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v 474 (806)
T 3cf2_A 395 DLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQV 474 (806)
T ss_dssp CHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCC
T ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCC
Confidence 58899999999999999999999999999998776555444455555566789999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 84 TWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 84 ~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
+|+||||++++|++|+++|.||++||++|+++|+++|+|||
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvL 515 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVL 515 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCE
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEE
Confidence 99999999999999999999999999999999999999997
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.65 E-value=1.3e-16 Score=128.96 Aligned_cols=121 Identities=65% Similarity=0.943 Sum_probs=105.8
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCchhhhhcccCCc
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRETIVEVPNI 83 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~~~~~~~~v 83 (125)
.+..++..|+||+|+|+..+|++|++.++++...........+..+......++.+||..++....|+..++.....+++
T Consensus 395 ~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v 474 (806)
T 1ypw_A 395 DLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQV 474 (806)
T ss_dssp CTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCC
T ss_pred hhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCchhhhhhcccCccc
Confidence 46789999999999999999999999999886554433333344444556678999999999999999988888899999
Q ss_pred ccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 84 TWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 84 ~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
+|+|++|++++|+.|.+.+.||+++|+.|.++|+.+++|||
T Consensus 475 ~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vL 515 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVL 515 (806)
T ss_dssp SSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCC
T ss_pred cccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeE
Confidence 99999999999999999999999999999999999999987
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.64 E-value=8e-17 Score=121.09 Aligned_cols=57 Identities=21% Similarity=0.317 Sum_probs=52.9
Q ss_pred cCCCchhhhhcccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 68 SSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 68 ~~ps~~~~~~~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
+.|++......+.|+++|+||||++++|++|+++|+||++||++|+++|++||||||
T Consensus 130 ~~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvL 186 (405)
T 4b4t_J 130 ADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVI 186 (405)
T ss_dssp CSCCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEE
T ss_pred cCchhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceE
Confidence 356677777788999999999999999999999999999999999999999999997
No 4
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.63 E-value=1.7e-16 Score=122.14 Aligned_cols=91 Identities=69% Similarity=1.047 Sum_probs=64.3
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCchhhhhcccCCc
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRETIVEVPNI 83 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~~~~~~~~v 83 (125)
++..+|..|.||+|+||.+||++|++.++++.....+.+...++.+......|+.+||..|++.++||.+++...++|+|
T Consensus 395 ~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v 474 (489)
T 3hu3_A 395 DLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQV 474 (489)
T ss_dssp CHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC-----
T ss_pred hHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCC
Confidence 57899999999999999999999999999987765544444444555566789999999999999999999999999999
Q ss_pred ccccccchHHH
Q psy5701 84 TWEDIGGLEGV 94 (125)
Q Consensus 84 ~w~digGl~~~ 94 (125)
+|+||||+...
T Consensus 475 ~W~dig~~~~~ 485 (489)
T 3hu3_A 475 TWEDIGGRSHH 485 (489)
T ss_dssp -----------
T ss_pred CHHHcCCCccc
Confidence 99999998643
No 5
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.62 E-value=6.4e-16 Score=93.63 Aligned_cols=62 Identities=23% Similarity=0.199 Sum_probs=46.4
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCchhhh-hcccC
Q psy5701 3 YYNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRET-IVEVP 81 (125)
Q Consensus 3 ~~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~~-~~~~~ 81 (125)
.++..||++|+|||||||.+||++|++.|+++.. ..|+.+||+.|++++.++..+.. ...|.
T Consensus 23 vdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~-----------------~~i~~~df~~Al~~v~~~~~~~~~~~~y~ 85 (88)
T 3vlf_B 23 IRWELISRLCPNSTGAELRSVCTEAGMFAIRARR-----------------KVATEKDFLKAVDKVISGYKKFSSTSRYM 85 (88)
T ss_dssp CCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSC-----------------SSBCHHHHHHHHHHHTC------------
T ss_pred cCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcc-----------------ccCCHHHHHHHHHHHhcCcccccchhHHh
Confidence 3689999999999999999999999999998742 25999999999999999886643 34443
No 6
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.58 E-value=5.3e-16 Score=92.88 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=45.9
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCch
Q psy5701 3 YYNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSAL 73 (125)
Q Consensus 3 ~~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~ 73 (125)
.++..||++|+|||||||.+||++|++.|+++. ...|+++||..|+++++||++
T Consensus 23 vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-----------------~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 23 VDLEDYVARPDKISGADINSICQESGMLAVREN-----------------RYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp CCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC-----------------CSSBCHHHHHHHHHHHCC---
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------------cCCcCHHHHHHHHHHHccCch
Confidence 357899999999999999999999999998763 236999999999999999987
No 7
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.56 E-value=1.7e-15 Score=91.41 Aligned_cols=52 Identities=31% Similarity=0.461 Sum_probs=46.4
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCC
Q psy5701 3 YYNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPS 71 (125)
Q Consensus 3 ~~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps 71 (125)
.+|..||++|+|||||||.+||++|++.|+++. ...|+++||+.|+++++|.
T Consensus 33 vdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~-----------------~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 33 INLRKIAELMPGASGAEVKGVCTEAGMYALRER-----------------RVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT-----------------CSEECHHHHHHHHHHHHCC
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc-----------------CCCCCHHHHHHHHHHHccC
Confidence 467899999999999999999999999999874 2369999999999999875
No 8
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.53 E-value=3.2e-15 Score=113.56 Aligned_cols=56 Identities=29% Similarity=0.354 Sum_probs=50.7
Q ss_pred CCCchhhhhcccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 69 SPSALRETIVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 69 ~ps~~~~~~~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
.|++........|+++|+||||++++|++|++.|+||++||++|+++|++||||||
T Consensus 164 d~~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvL 219 (437)
T 4b4t_L 164 DPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVL 219 (437)
T ss_dssp CCCCSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEE
T ss_pred CchhheeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEE
Confidence 35555555667899999999999999999999999999999999999999999997
No 9
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.50 E-value=6.8e-15 Score=111.29 Aligned_cols=55 Identities=25% Similarity=0.292 Sum_probs=48.8
Q ss_pred CCchhhhhcccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 70 PSALRETIVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 70 ps~~~~~~~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
|++........|+++|+||||++++|++|++.|+||++||++|+++|++||||||
T Consensus 166 ~~~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvL 220 (437)
T 4b4t_I 166 PMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVI 220 (437)
T ss_dssp CCCCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEE
T ss_pred CcceeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCc
Confidence 3333334567899999999999999999999999999999999999999999997
No 10
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.49 E-value=7.2e-15 Score=87.82 Aligned_cols=55 Identities=15% Similarity=0.191 Sum_probs=43.7
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccC-CCchhh
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSS-PSALRE 75 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~-ps~~~~ 75 (125)
++..||++|+|||||||.++|++|++.|+++. ...|+.+||..|++++. |+.+.+
T Consensus 21 dl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~-----------------~~~i~~~df~~Al~~v~~~~~~~~ 76 (82)
T 2dzn_B 21 DLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN-----------------RYVILQSDLEEAYATQVKTDNTVD 76 (82)
T ss_dssp CSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT-----------------CSEECHHHHHHHHHTTCC------
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------------cCCcCHHHHHHHHHHHHcCcCChH
Confidence 56789999999999999999999999999873 13599999999999994 555543
No 11
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.49 E-value=7.9e-15 Score=111.78 Aligned_cols=48 Identities=25% Similarity=0.460 Sum_probs=45.7
Q ss_pred hcccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 77 IVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 77 ~~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
..+.|+++|+||||++++|++|++.|+||++||++|+++|++||||||
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGIL 247 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGIL 247 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEE
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceE
Confidence 346799999999999999999999999999999999999999999997
No 12
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.48 E-value=3.7e-14 Score=83.88 Aligned_cols=51 Identities=31% Similarity=0.469 Sum_probs=45.0
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCC
Q psy5701 3 YYNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSP 70 (125)
Q Consensus 3 ~~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~p 70 (125)
.++..||++|+|||||||.++|++|++.|+++. ...|+.+||..|++++..
T Consensus 25 ~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-----------------~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 25 INLRKIAELMPGASGAEVKGVCTEAGMYALRER-----------------RVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp CCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----------------CSEECHHHHHHHHHHHHC
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----------------CCCCCHHHHHHHHHHHHh
Confidence 368999999999999999999999999999873 236999999999998754
No 13
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.47 E-value=1.4e-14 Score=109.95 Aligned_cols=53 Identities=21% Similarity=0.220 Sum_probs=47.8
Q ss_pred chhhhhcccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 72 ALRETIVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 72 ~~~~~~~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
+........|+++|+||||++++|++|++.|+||++||++|+++|++||||||
T Consensus 167 ~~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvL 219 (434)
T 4b4t_M 167 VKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGAL 219 (434)
T ss_dssp CSCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEE
T ss_pred hhhcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeE
Confidence 33334456789999999999999999999999999999999999999999997
No 14
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.45 E-value=3.2e-14 Score=107.88 Aligned_cols=49 Identities=27% Similarity=0.330 Sum_probs=46.3
Q ss_pred hhcccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 76 TIVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 76 ~~~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
.....|+++|+||||++++|++|++.|+||++||++|+++|++||||||
T Consensus 162 ~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiL 210 (428)
T 4b4t_K 162 GENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVL 210 (428)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEE
T ss_pred cCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEE
Confidence 3456789999999999999999999999999999999999999999997
No 15
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.27 E-value=3.5e-12 Score=93.30 Aligned_cols=79 Identities=15% Similarity=0.277 Sum_probs=58.4
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCcc--------------------------------chhchHHhh
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLE--------------------------------DDQIDAEIL 51 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~--------------------------------~~~~~~~~~ 51 (125)
.+..||+.|+||+|+||.+||++|++.++++........ ...++.+..
T Consensus 203 ~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (322)
T 1xwi_A 203 DFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKL 282 (322)
T ss_dssp HHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGB
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccccccccchhhccccccccccc
Confidence 578999999999999999999999999999875431100 001122223
Q ss_pred hcccccHHHHHHHhcccCCCchhhhhcccCC
Q psy5701 52 ASLAVTMENFRYAMGKSSPSALRETIVEVPN 82 (125)
Q Consensus 52 ~~~~i~~~Df~~Al~~~~ps~~~~~~~~~~~ 82 (125)
..+.|+++||+.|+++++||++.+....|..
T Consensus 283 ~~~~v~~~df~~al~~~~ps~~~~~~~~~~~ 313 (322)
T 1xwi_A 283 LEPVVSMSDMLRSLSNTKPTVNEHDLLKLKK 313 (322)
T ss_dssp CCCCBCHHHHHHHHHTCCCSCCHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 3457999999999999999987765555443
No 16
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.24 E-value=1e-12 Score=106.04 Aligned_cols=82 Identities=22% Similarity=0.186 Sum_probs=28.2
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccch-------hc-hHHhhhcccccHHHHHHHhcccCCCchh
Q psy5701 3 YYNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDD-------QI-DAEILASLAVTMENFRYAMGKSSPSALR 74 (125)
Q Consensus 3 ~~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~-------~~-~~~~~~~~~i~~~Df~~Al~~~~ps~~~ 74 (125)
.+|..||++|+|||||||.+||++|++.|+++.+........ .. ..+....+.|+++||++|+++++||++.
T Consensus 670 ~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~ 749 (806)
T 3cf2_A 670 VDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSD 749 (806)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHC-----------------------CCC----CCTTTC---------
T ss_pred CCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCCH
Confidence 357899999999999999999999999999997654211100 00 0111234579999999999999999999
Q ss_pred hhhcccCCcc
Q psy5701 75 ETIVEVPNIT 84 (125)
Q Consensus 75 ~~~~~~~~v~ 84 (125)
+.+..|+.|+
T Consensus 750 ~~l~~y~~~~ 759 (806)
T 3cf2_A 750 NDIRKYEMFA 759 (806)
T ss_dssp ------CCCC
T ss_pred HHHHHHHHHH
Confidence 9888887764
No 17
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.21 E-value=1.4e-11 Score=91.25 Aligned_cols=79 Identities=22% Similarity=0.323 Sum_probs=59.1
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCc--------------------------cchhchHHhhhccccc
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDL--------------------------EDDQIDAEILASLAVT 57 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~--------------------------~~~~~~~~~~~~~~i~ 57 (125)
.+..||+.|+||+|+||.+||++|++.|+++....... ....++.+....+.|+
T Consensus 241 ~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 320 (355)
T 2qp9_X 241 DYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLT 320 (355)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCcc
Confidence 57899999999999999999999999999986532100 0011222233446799
Q ss_pred HHHHHHHhcccCCCchhhhhcccCC
Q psy5701 58 MENFRYAMGKSSPSALRETIVEVPN 82 (125)
Q Consensus 58 ~~Df~~Al~~~~ps~~~~~~~~~~~ 82 (125)
++||..|++.++||++.+....|..
T Consensus 321 ~~df~~Al~~~~ps~~~~~~~~~~~ 345 (355)
T 2qp9_X 321 IKDFLKAIKSTRPTVNEDDLLKQEQ 345 (355)
T ss_dssp HHHHHHHHHHSCCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999999999999998876655544
No 18
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.18 E-value=2.7e-11 Score=86.87 Aligned_cols=66 Identities=26% Similarity=0.297 Sum_probs=47.2
Q ss_pred hHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCchhh
Q psy5701 4 YNLGIAAE--THGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRE 75 (125)
Q Consensus 4 ~l~~lA~~--T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~ 75 (125)
++..||.. |+|||||||.+||++|++.|+++....... ........|+++||++|+++++||++++
T Consensus 204 ~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~------~~~~~~~~i~~~df~~al~~~~ps~~~~ 271 (274)
T 2x8a_A 204 NLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKS------GNEKGELKVSHKHFEEAFKKVRSSISKK 271 (274)
T ss_dssp CHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----------------CCBCHHHHHHHHTTCCCCC---
T ss_pred CHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccc------cccccCCeecHHHHHHHHHHhcCCCChh
Confidence 57889987 559999999999999999999886543111 0112345799999999999999998765
No 19
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.17 E-value=4.3e-11 Score=90.84 Aligned_cols=55 Identities=20% Similarity=0.247 Sum_probs=48.7
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCchhh
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRE 75 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~ 75 (125)
++..||++|+|||||||.+||++|++.|+++. ...|+.+||..|+++++|+.++.
T Consensus 375 dl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~-----------------~~~i~~~Df~~Al~~v~~~~~~~ 429 (434)
T 4b4t_M 375 NWQELARSTDEFNGAQLKAVTVEAGMIALRNG-----------------QSSVKHEDFVEGISEVQARKSKS 429 (434)
T ss_dssp CHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT-----------------CSSBCHHHHHHHHHSCSSSCCCC
T ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-----------------CCCcCHHHHHHHHHHHhCCCCcC
Confidence 57899999999999999999999999999873 23599999999999999987653
No 20
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.16 E-value=2.1e-11 Score=92.70 Aligned_cols=79 Identities=15% Similarity=0.263 Sum_probs=58.7
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCcc--------------------------------chhchHHhh
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLE--------------------------------DDQIDAEIL 51 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~--------------------------------~~~~~~~~~ 51 (125)
.+..||..|+||+|+||.+||++|++.++++........ ...++.+..
T Consensus 325 ~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (444)
T 2zan_A 325 DFQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKL 404 (444)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCB
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhc
Confidence 578999999999999999999999999999875431000 001111222
Q ss_pred hcccccHHHHHHHhcccCCCchhhhhcccCC
Q psy5701 52 ASLAVTMENFRYAMGKSSPSALRETIVEVPN 82 (125)
Q Consensus 52 ~~~~i~~~Df~~Al~~~~ps~~~~~~~~~~~ 82 (125)
..++|+++||..|+++++||++.+....|..
T Consensus 405 ~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~ 435 (444)
T 2zan_A 405 LEPVVSMWDMLRSLSSTKPTVNEQDLLKLKK 435 (444)
T ss_dssp CCCCEEHHHHHHHHHTCCCSCCHHHHHHHHH
T ss_pred cCCccCHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 3457999999999999999988766655544
No 21
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.13 E-value=3.1e-11 Score=91.72 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=47.7
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCchhhhhccc
Q psy5701 3 YYNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRETIVEV 80 (125)
Q Consensus 3 ~~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~~~~~~ 80 (125)
.++..||+.|+|||||||.+||++|++.|+++. ...|+.+||..|++++.|+...+....+
T Consensus 374 ~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~-----------------~~~i~~~d~~~Al~~v~~~~k~e~~~e~ 434 (437)
T 4b4t_L 374 FDFEAAVKMSDGFNGADIRNCATEAGFFAIRDD-----------------RDHINPDDLMKAVRKVAEVKKLEGTIEY 434 (437)
T ss_dssp CCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTT-----------------CSSBCHHHHHHHHHHHHHTCC-------
T ss_pred cCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-----------------CCCCCHHHHHHHHHHHHhccCcccchhh
Confidence 368999999999999999999999999999863 1258999999999999887665544433
No 22
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.12 E-value=2.9e-11 Score=91.50 Aligned_cols=56 Identities=27% Similarity=0.457 Sum_probs=48.9
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCchhhh
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRET 76 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~~ 76 (125)
++..||+.|+|||||||.+||++|++.|+++. ...|+.+||+.|++++.|+..++.
T Consensus 376 dl~~LA~~T~GfSGADI~~l~~eA~~~Air~~-----------------~~~It~eDf~~Al~rv~~~~~~e~ 431 (437)
T 4b4t_I 376 NLETLVTTKDDLSGADIQAMCTEAGLLALRER-----------------RMQVTAEDFKQAKERVMKNKVEEN 431 (437)
T ss_dssp CHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT-----------------CSCBCHHHHHHHHHHHHHHHCCCS
T ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-----------------CCccCHHHHHHHHHHHhCCCChhh
Confidence 68999999999999999999999999999863 235999999999999988766543
No 23
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.11 E-value=2.2e-11 Score=88.77 Aligned_cols=80 Identities=21% Similarity=0.327 Sum_probs=60.2
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCcc--------------------------chhchHHhhhccccc
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLE--------------------------DDQIDAEILASLAVT 57 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~--------------------------~~~~~~~~~~~~~i~ 57 (125)
.+..||.+|+||+|+||..||++|++.++++........ ...++.+......|+
T Consensus 208 ~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it 287 (322)
T 3eie_A 208 DYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLT 287 (322)
T ss_dssp HHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccccccccccccccccCCCCC
Confidence 578999999999999999999999999999876542100 001111222336799
Q ss_pred HHHHHHHhcccCCCchhhhhcccCCc
Q psy5701 58 MENFRYAMGKSSPSALRETIVEVPNI 83 (125)
Q Consensus 58 ~~Df~~Al~~~~ps~~~~~~~~~~~v 83 (125)
.+||.+|++.++||++.+....|..|
T Consensus 288 ~~df~~al~~~~ps~~~~~~~~~~~~ 313 (322)
T 3eie_A 288 IKDFLKAIKSTRPTVNEDDLLKQEQF 313 (322)
T ss_dssp HHHHHHHHHHSCCSSCTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 99999999999999988776666543
No 24
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.10 E-value=4.1e-11 Score=90.15 Aligned_cols=52 Identities=33% Similarity=0.549 Sum_probs=45.8
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCc
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSA 72 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~ 72 (125)
++..||++|+|||||||.+||++|++.|+++. ...|+++||+.|++++.++.
T Consensus 342 dl~~lA~~t~G~SGADi~~l~~eA~~~Air~~-----------------~~~vt~~Df~~Al~~v~~~~ 393 (405)
T 4b4t_J 342 NLRKVAEKMNGCSGADVKGVCTEAGMYALRER-----------------RIHVTQEDFELAVGKVMNKN 393 (405)
T ss_dssp CHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT-----------------CSBCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC-----------------CCCcCHHHHHHHHHHHhCcc
Confidence 58899999999999999999999999999863 23599999999999986654
No 25
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.03 E-value=3.8e-10 Score=85.58 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=45.7
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcc-cCCCchh
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGK-SSPSALR 74 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~-~~ps~~~ 74 (125)
++..||.+|+|||||||.++|++|++.|+++. ...|+++||++|+.+ ++++.+.
T Consensus 367 dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~-----------------~~~i~~~d~~~A~~~~~~~~~~~ 421 (428)
T 4b4t_K 367 DLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN-----------------RYVILQSDLEEAYATQVKTDNTV 421 (428)
T ss_dssp CHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT-----------------CSSBCHHHHHHHHHHHSCSCCCS
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC-----------------CCCCCHHHHHHHHHHhhCccCCc
Confidence 58999999999999999999999999999873 225899999999976 4555443
No 26
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.03 E-value=1.5e-10 Score=88.35 Aligned_cols=52 Identities=27% Similarity=0.292 Sum_probs=45.5
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCc
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSA 72 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~ 72 (125)
++..||++|+|||||||.+||++|++.|+++. ...|+.+||+.|++++.++.
T Consensus 403 dl~~LA~~T~GfSGADI~~l~~eAa~~Air~~-----------------~~~it~~Df~~Al~kV~~g~ 454 (467)
T 4b4t_H 403 RWELISRLCPNSTGAELRSVCTEAGMFAIRAR-----------------RKVATEKDFLKAVDKVISGY 454 (467)
T ss_dssp CHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT-----------------CSSBCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC-----------------CCccCHHHHHHHHHHHhcCc
Confidence 57899999999999999999999999999873 22589999999999986554
No 27
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.98 E-value=1.6e-10 Score=82.84 Aligned_cols=46 Identities=30% Similarity=0.554 Sum_probs=36.2
Q ss_pred ccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 79 EVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 79 ~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
..|+++|+||||++++|++|++.|.||+.+|+.|+.+++.+|+|||
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~Gvl 48 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVL 48 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEE
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEE
Confidence 4688999999999999999999999999999999999999999975
No 28
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.93 E-value=3.7e-10 Score=81.61 Aligned_cols=52 Identities=60% Similarity=0.852 Sum_probs=48.4
Q ss_pred hhhhhcccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 73 LRETIVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 73 ~~~~~~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
+++.....|+++|+||+|++++|+.|++.+.||++||+.|.++|+++++|||
T Consensus 2 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vL 53 (301)
T 3cf0_A 2 LRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVL 53 (301)
T ss_dssp CCCCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEE
T ss_pred CccccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEE
Confidence 4566678899999999999999999999999999999999999999999986
No 29
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.89 E-value=1.6e-09 Score=78.23 Aligned_cols=77 Identities=23% Similarity=0.236 Sum_probs=54.3
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccc-------hhchH-HhhhcccccHHHHHHHhcccCCCchhh
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLED-------DQIDA-EILASLAVTMENFRYAMGKSSPSALRE 75 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~-------~~~~~-~~~~~~~i~~~Df~~Al~~~~ps~~~~ 75 (125)
++..||..|+||+|+||.++|++|++.|+++.+....... ...+. .......|+.+||..|++.++||++..
T Consensus 209 ~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~ 288 (301)
T 3cf0_A 209 DLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDN 288 (301)
T ss_dssp CHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCCSSCHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHH
Confidence 5788999999999999999999999999988654311100 00000 011235799999999999999998876
Q ss_pred hhccc
Q psy5701 76 TIVEV 80 (125)
Q Consensus 76 ~~~~~ 80 (125)
....|
T Consensus 289 ~~~~~ 293 (301)
T 3cf0_A 289 DIRKY 293 (301)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
No 30
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.81 E-value=1.4e-09 Score=79.43 Aligned_cols=46 Identities=30% Similarity=0.525 Sum_probs=42.3
Q ss_pred cccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 78 VEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 78 ~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
..+|+++|+||||++++|+.|++.|.||++||++|+. +..||+|||
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iL 49 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGIL 49 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEE
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEE
Confidence 4678999999999999999999999999999999985 478899986
No 31
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.72 E-value=6.6e-09 Score=74.36 Aligned_cols=80 Identities=28% Similarity=0.301 Sum_probs=56.1
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCchhhhhcccCCc
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRETIVEVPNI 83 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~~~~~~~~v 83 (125)
++..|+..|+||+|+||..||++|++.++++....... ... ......|+.+||..|++.++||+..+....++
T Consensus 213 ~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~---~~~--~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~-- 285 (297)
T 3b9p_A 213 ALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVK---CLD--ISAMRAITEQDFHSSLKRIRRSVAPQSLNSYE-- 285 (297)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-------------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHH--
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcc---ccc--ccccCCcCHHHHHHHHHHcCCCCCHHHHHHHH--
Confidence 57889999999999999999999999999874321100 000 01124699999999999999999887766664
Q ss_pred ccccccc
Q psy5701 84 TWEDIGG 90 (125)
Q Consensus 84 ~w~digG 90 (125)
.|++..|
T Consensus 286 ~~~~~~~ 292 (297)
T 3b9p_A 286 KWSQDYG 292 (297)
T ss_dssp HHC----
T ss_pred HHHHHhC
Confidence 3666555
No 32
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.69 E-value=1.7e-09 Score=83.45 Aligned_cols=95 Identities=23% Similarity=0.213 Sum_probs=72.4
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCchhhhh----cc
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRETI----VE 79 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~~~----~~ 79 (125)
.+..||..|+||+|+||.++|++|+..|.++. ...|+.+||..|+.++.++..+... ..
T Consensus 224 ~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~-----------------~~~It~~dl~~al~~v~~~~~~~~~~~~~~e 286 (499)
T 2dhr_A 224 DLALLAKRTPGFVGADLENLLNEAALLAAREG-----------------RRKITMKDLEEAADRVMMLPAKKSLVLSPRD 286 (499)
T ss_dssp TTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTC-----------------CSSCCSHHHHHHHHHHTTCSSSSCCCCCTTH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC-----------------CCccCHHHHHHHHHHHhcccccccchhhHHH
Confidence 46789999999999999999999998876531 2258999999999998776543221 11
Q ss_pred cCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 80 VPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 80 ~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
...+.|+++|. ..+.|++.+++.+.++.|.|..+.|
T Consensus 287 ~~~~a~~e~g~---------av~~~~l~~~~~v~~~~i~pr~~~~ 322 (499)
T 2dhr_A 287 RRITAYHEAGH---------ALAAHFLEHADGVHKVTIVPRGRAL 322 (499)
T ss_dssp HHHHHHHHHHH---------HHHHCCSSSCCCCCCEESCCSSCTT
T ss_pred HhhhHHHHHHH---------HHHHhhcCCCCeeeEEEeecCCCcC
Confidence 23467877775 3578999999999999998876543
No 33
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.69 E-value=4e-09 Score=80.97 Aligned_cols=91 Identities=29% Similarity=0.279 Sum_probs=66.0
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCchhhh----hcc
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRET----IVE 79 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~~----~~~ 79 (125)
.+..||..|+||+|+||.++|++|++.+.++. ...|+.+||..|+.++.+...+.. ...
T Consensus 209 ~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~-----------------~~~I~~~dl~~al~~v~~~~~~~~~~~~~~e 271 (476)
T 2ce7_A 209 NLEIIAKRTPGFVGADLENLVNEAALLAAREG-----------------RDKITMKDFEEAIDRVIAGPARKSLLISPAE 271 (476)
T ss_dssp CHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----------------CSSBCHHHHHHHHHHHC--------CCCHHH
T ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcC-----------------CCeecHHHHHHHHHHHhcCccccchhhhcch
Confidence 47789999999999999999999999887542 235999999999999876543321 112
Q ss_pred cCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCC
Q psy5701 80 VPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMT 120 (125)
Q Consensus 80 ~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p 120 (125)
...+.|.++|+ ..+.|++.+++.+.++.|-|.
T Consensus 272 ~~~~a~~e~G~---------a~~~~~l~~~~~~~~~~i~pr 303 (476)
T 2ce7_A 272 KRIIAYHEAGH---------AVVSTVVPNGEPVHRISIIPR 303 (476)
T ss_dssp HHHHHHHHHHH---------HHHHHHSTTCCCCCEEECC--
T ss_pred hhhhHHHHhhh---------HHHhhccCCccccceeeeecC
Confidence 34467777775 457899999999998888664
No 34
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.67 E-value=8.9e-09 Score=76.06 Aligned_cols=80 Identities=23% Similarity=0.257 Sum_probs=57.7
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCchhhhhcccCCc
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRETIVEVPNI 83 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~~~~~~~~v 83 (125)
.+..|++.|+||+|+||..||++|.+.++++...... ..+. ......|+.+||..|++.++||+..+....+ .
T Consensus 275 ~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~---~~~~--~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~--~ 347 (357)
T 3d8b_A 275 EIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADI---ATIT--PDQVRPIAYIDFENAFRTVRPSVSPKDLELY--E 347 (357)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC---------------CCCBCHHHHHHHHHHHGGGCCCCCHHHH--H
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhh---cccc--ccccCCcCHHHHHHHHHhcCCCCCHHHHHHH--H
Confidence 5788999999999999999999999999986432110 0000 0123579999999999999999887765555 3
Q ss_pred ccccccc
Q psy5701 84 TWEDIGG 90 (125)
Q Consensus 84 ~w~digG 90 (125)
.|++..|
T Consensus 348 ~~~~~~g 354 (357)
T 3d8b_A 348 NWNKTFG 354 (357)
T ss_dssp HHHHHHS
T ss_pred HHHHHhC
Confidence 5666554
No 35
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.58 E-value=1.6e-08 Score=74.68 Aligned_cols=59 Identities=29% Similarity=0.396 Sum_probs=40.2
Q ss_pred hcccCCCchhhhhcccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 65 MGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 65 l~~~~ps~~~~~~~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
.++++..........+++++|+||+|++++|+.|++.+.||+++|++|++ +.++++|||
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iL 88 (355)
T 2qp9_X 30 NKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGIL 88 (355)
T ss_dssp -----------------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEE
T ss_pred HHHHHHHHhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEE
Confidence 34444444445566788999999999999999999999999999999998 778999986
No 36
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.50 E-value=3.7e-08 Score=71.66 Aligned_cols=49 Identities=33% Similarity=0.519 Sum_probs=44.5
Q ss_pred hhhcccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 75 ETIVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 75 ~~~~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
.....+++++|+||+|++++|+.|++.+.||+++|++|.+ +..||+|||
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vL 55 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGIL 55 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEE
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEE
Confidence 3456789999999999999999999999999999999998 678899986
No 37
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.41 E-value=7e-08 Score=73.31 Aligned_cols=50 Identities=28% Similarity=0.493 Sum_probs=43.3
Q ss_pred hhhhcccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 74 RETIVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 74 ~~~~~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
......+++++|+||+|++++|+.|++.+.||+++|++|.. +..||+|||
T Consensus 122 ~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vL 171 (444)
T 2zan_A 122 GAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGIL 171 (444)
T ss_dssp --CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEE
T ss_pred cceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEE
Confidence 33456688999999999999999999999999999999986 567889986
No 38
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.20 E-value=7.6e-07 Score=63.12 Aligned_cols=47 Identities=32% Similarity=0.450 Sum_probs=44.2
Q ss_pred cccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 78 VEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 78 ~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
...++++|++|+|++++++.|.+.+.+|+.+|++|.++|+++++|||
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 55 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGIL 55 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEE
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEE
Confidence 45678999999999999999999999999999999999999999986
No 39
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.12 E-value=4.3e-07 Score=67.02 Aligned_cols=64 Identities=20% Similarity=0.336 Sum_probs=50.7
Q ss_pred HHHHHhcccCCCch----hhhhcccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 60 NFRYAMGKSSPSAL----RETIVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 60 Df~~Al~~~~ps~~----~~~~~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
.+.++++.+.|... ++....++.++|+||+|++++++.|++.+.||+++|++|.+++ .+|+|||
T Consensus 54 ~~~~~l~~~~~~~~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vL 121 (357)
T 3d8b_A 54 PVDERLKNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGIL 121 (357)
T ss_dssp ---CCSTTSCHHHHHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEE
T ss_pred hHHHHhccCChHHHHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEE
Confidence 45566666666543 3345677899999999999999999999999999999998876 7888876
No 40
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.08 E-value=5.8e-06 Score=57.77 Aligned_cols=46 Identities=39% Similarity=0.410 Sum_probs=38.6
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhc
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMG 66 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~ 66 (125)
.+..||..|+||+|+||.++|++|+..|.++. ...|+.+||++|++
T Consensus 209 ~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~-----------------~~~I~~~dl~~a~~ 254 (254)
T 1ixz_A 209 DLALLAKRTPGFVGADLENLLNEAALLAAREG-----------------RRKITMKDLEEAAS 254 (254)
T ss_dssp CHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----------------CSSBCHHHHHHHTC
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------------CCCcCHHHHHHHhC
Confidence 46789999999999999999999999887642 12589999999874
No 41
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.08 E-value=1.2e-06 Score=62.52 Aligned_cols=50 Identities=24% Similarity=0.312 Sum_probs=43.4
Q ss_pred hhhhcccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 74 RETIVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 74 ~~~~~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
++....+++++|++|+|++++++.|++.+.+|+.+|++|.+++ .+++|||
T Consensus 9 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vl 58 (297)
T 3b9p_A 9 DEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLL 58 (297)
T ss_dssp TTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEE
T ss_pred HHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEE
Confidence 3445667889999999999999999999999999999998876 5677775
No 42
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.08 E-value=1.6e-06 Score=66.79 Aligned_cols=46 Identities=17% Similarity=0.323 Sum_probs=43.2
Q ss_pred ccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 79 EVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 79 ~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
..+.++|++|+|+..+++.|++.|.+|+++|++|+++|+++|+|||
T Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vL 242 (489)
T 3hu3_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGIL 242 (489)
T ss_dssp HHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEE
T ss_pred ccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEE
Confidence 3467899999999999999999999999999999999999999987
No 43
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.03 E-value=1.1e-06 Score=71.16 Aligned_cols=46 Identities=15% Similarity=0.317 Sum_probs=43.6
Q ss_pred ccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 79 EVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 79 ~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
..+.++|+||+|++.+++.|++.+.+|++||++|+++++++++|||
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vL 242 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGIL 242 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEE
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEE
Confidence 4567999999999999999999999999999999999999999986
No 44
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.01 E-value=2e-06 Score=59.99 Aligned_cols=43 Identities=23% Similarity=0.421 Sum_probs=34.6
Q ss_pred CCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 81 PNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 81 ~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
++++|++|+|++++|+.|++.+.+ +++|+.|.++|+++|+|||
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vl 43 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGAL 43 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEE
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEE
Confidence 468999999999999999999998 9999999999999999986
No 45
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.01 E-value=4.1e-06 Score=59.33 Aligned_cols=51 Identities=41% Similarity=0.530 Sum_probs=43.8
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCC
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPS 71 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps 71 (125)
.+..|+..|.||+|+||..||++|.+.|+++. ...|+.+||.+|++.+.+.
T Consensus 211 ~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~-----------------~~~I~~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 211 NLEEIAKMTEGCVGAELKAICTEAGMNAIREL-----------------RDYVTMDDFRKAVEKIMEK 261 (285)
T ss_dssp CHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT-----------------CSSBCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------------cCcCCHHHHHHHHHHHHhc
Confidence 47889999999999999999999999998763 1259999999999988644
No 46
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.00 E-value=1.3e-07 Score=81.34 Aligned_cols=92 Identities=8% Similarity=0.062 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCchhhhhcccCCcccccccchHH
Q psy5701 14 GHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEG 93 (125)
Q Consensus 14 GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~~~~~~~~v~w~digGl~~ 93 (125)
+|.|++|.. ++++++..+++.-. . .+++... |...-|..+ +.+.|+.. ....++|+||||+.+
T Consensus 965 ~~~g~~l~~-~~e~a~~~L~~~~~-~---~~ei~~~------i~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~ 1027 (1706)
T 3cmw_A 965 SYKGEKIGQ-GKANATAWLKDNPE-T---AKEIEKK------VRELLLSNP-NSTTGSTG-----SASGSSTGSMSAIDE 1027 (1706)
T ss_dssp EETTEEEEE-SHHHHHHHHHHCHH-H---HHHHHHH------HHHHHCSSC-CC----------------------CTTH
T ss_pred eecccchhh-hHHHHHHHHHhCch-H---HHHHHHH------HHHHHhhhc-cCCCcccc-----ccCCceeeecCCccH
Confidence 466777754 88999988887311 1 0111111 111123322 33344433 334599999999999
Q ss_pred HHHHHHHHhhhhccC----------hHHHhh------CCCC----------CCCC
Q psy5701 94 VKRELQELVQPSLWS----------PSKVLM------NEHA----------MTHQ 122 (125)
Q Consensus 94 ~k~~l~~~i~~P~~~----------p~~f~~------~gi~----------~p~G 122 (125)
+|+.+.++++||+++ |+.|++ .|+. +|+|
T Consensus 1028 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g 1082 (1706)
T 3cmw_A 1028 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMG 1082 (1706)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETT
T ss_pred HHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCC
Confidence 999999999999955 889998 7777 8888
No 47
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.98 E-value=2.4e-06 Score=63.57 Aligned_cols=72 Identities=24% Similarity=0.226 Sum_probs=52.7
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCchhhhhccc
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRETIVEV 80 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~~~~~~ 80 (125)
.+..|+..|+||+|+||..||++|...++++........ .. ......|+.+||..+++.++|+...+.+..+
T Consensus 306 ~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~---~~--~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~ 377 (389)
T 3vfd_A 306 ELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKN---MS--ASEMRNIRLSDFTESLKKIKRSVSPQTLEAY 377 (389)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---C---CS--SSCCCCCCHHHHHHHHHHCCCSSCHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhc---cc--hhhcCCcCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 578899999999999999999999999998753321100 00 0122468999999999999999876544433
No 48
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.91 E-value=1.8e-05 Score=55.31 Aligned_cols=49 Identities=41% Similarity=0.379 Sum_probs=41.6
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCC
Q psy5701 5 NLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSP 70 (125)
Q Consensus 5 l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~p 70 (125)
+..+|..|+||+++||.++|++|++.|.++. ...|+.+||.+|++.+..
T Consensus 206 ~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~-----------------~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 206 AAIIARGTPGFSGADLANLVNEAALFAARGN-----------------KRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----------------CSSBCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----------------CCcccHHHHHHHHHHHhc
Confidence 5678999999999999999999999887652 235999999999988753
No 49
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.88 E-value=2.2e-05 Score=55.61 Aligned_cols=46 Identities=39% Similarity=0.410 Sum_probs=38.3
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhc
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMG 66 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~ 66 (125)
.+..||..|+||+|+||.++|++|+..+.++. ...|+.+||++|++
T Consensus 233 ~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~-----------------~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 233 DLALLAKRTPGFVGADLENLLNEAALLAAREG-----------------RRKITMKDLEEAAS 278 (278)
T ss_dssp CHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----------------CCSBCHHHHHHHTC
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----------------CCCcCHHHHHHHhC
Confidence 36789999999999999999999998886542 22589999999874
No 50
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.87 E-value=4.8e-06 Score=58.27 Aligned_cols=46 Identities=26% Similarity=0.371 Sum_probs=37.3
Q ss_pred cccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 78 VEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 78 ~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
..+++.+|+||+|++.+|+.|.+.+.+ +.+|+.|+++|+++|+|||
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vl 49 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVL 49 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEE
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEE
Confidence 356788999999999999999999987 9999999999999999986
No 51
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.84 E-value=7.3e-06 Score=60.93 Aligned_cols=63 Identities=21% Similarity=0.247 Sum_probs=48.5
Q ss_pred HHHHhcccCCCchhhhhcccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 61 FRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 61 f~~Al~~~~ps~~~~~~~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
|...-........++....++.++|+||.|++.+++.|.+.+.+|+.+|++|.+++ .+++|||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vL 152 (389)
T 3vfd_A 90 FRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLL 152 (389)
T ss_dssp -------CCTTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEE
T ss_pred cccccHHHHHHHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEE
Confidence 33333444555566677788999999999999999999999999999999999887 5677776
No 52
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.82 E-value=1.3e-05 Score=61.55 Aligned_cols=44 Identities=32% Similarity=0.442 Sum_probs=41.2
Q ss_pred cCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 80 VPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 80 ~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
.++++|+||+|++++|++|++.+.+ +++|+.|.++|+++|+|||
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvL 53 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGIL 53 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEE
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEE
Confidence 4678999999999999999999988 8999999999999999986
No 53
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.79 E-value=3.5e-06 Score=58.76 Aligned_cols=53 Identities=38% Similarity=0.575 Sum_probs=40.1
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCch
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSAL 73 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~ 73 (125)
++..|+..|+||+|+||..+|++|++.|+++. ...|+.+||..|++++.++..
T Consensus 202 ~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~-----------------~~~i~~~d~~~a~~~~~~~~~ 254 (262)
T 2qz4_A 202 YSQRLAELTPGFSGADIANICNEAALHAAREG-----------------HTSVHTLNFEYAVERVLAGTA 254 (262)
T ss_dssp HHHHHHHTCTTCCHHHHHHHHHHHHTC-------------------------CCBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC-----------------CCCCCHHHHHHHHHHhccChh
Confidence 45789999999999999999999999887652 125889999999998876653
No 54
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.77 E-value=9.4e-06 Score=56.99 Aligned_cols=46 Identities=28% Similarity=0.414 Sum_probs=42.5
Q ss_pred cccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 78 VEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 78 ~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
..+++++|++|+|++++++.|++.+.+ +.+|+.|..+|+++|+|||
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vl 48 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVL 48 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCC
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEE
Confidence 356788999999999999999999887 9999999999999999997
No 55
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.58 E-value=6.8e-06 Score=57.74 Aligned_cols=54 Identities=28% Similarity=0.309 Sum_probs=43.5
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCchhh
Q psy5701 5 NLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRE 75 (125)
Q Consensus 5 l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~ 75 (125)
+..|+..|.||+|+||..+|++|++.|.++. ...|+.+||..|++.+.|+..+.
T Consensus 207 ~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~-----------------~~~i~~~~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 207 LQEVAKLTAGLAGADLANIINEAALLAGRNN-----------------QKEVRQQHLKEAVERGIAGLEKK 260 (268)
T ss_dssp TTTTTSSSCSSCHHHHHHHHHHHHHTTSSSC-----------------CCSCCHHHHHTSCTTCCCCCC--
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------------cCCcCHHHHHHHHHHHhhcchhh
Confidence 5668889999999999999999998765321 23589999999999999987654
No 56
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.52 E-value=7.8e-05 Score=51.95 Aligned_cols=48 Identities=31% Similarity=0.526 Sum_probs=42.1
Q ss_pred hhcccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 76 TIVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 76 ~~~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
.....|+++|+|++|+++++.++++.+.+ +.++..|..++++.|+|||
T Consensus 6 ~~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~l 53 (254)
T 1ixz_A 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVL 53 (254)
T ss_dssp --CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEE
T ss_pred cccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEE
Confidence 34567889999999999999999998887 7899999999999999975
No 57
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.40 E-value=7.2e-05 Score=57.72 Aligned_cols=43 Identities=33% Similarity=0.536 Sum_probs=40.8
Q ss_pred CCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 81 PNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 81 ~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
++++|+||+|++++|.++++.+.+ +.+|+.|..+|+++|+|||
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvL 68 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVL 68 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEE
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEE
Confidence 789999999999999999999987 8999999999999999986
No 58
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.03 E-value=0.00052 Score=48.46 Aligned_cols=46 Identities=33% Similarity=0.528 Sum_probs=41.2
Q ss_pred cccCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 78 VEVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 78 ~~~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
...++++|+||+|++++++++++.+.+ +.++..|..++++.|+||+
T Consensus 32 ~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvl 77 (278)
T 1iy2_A 32 TEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVL 77 (278)
T ss_dssp CCCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEE
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEE
Confidence 445789999999999999999998876 7889999999999999975
No 59
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.40 E-value=0.025 Score=43.07 Aligned_cols=39 Identities=13% Similarity=0.091 Sum_probs=33.6
Q ss_pred ccccchHHHHHHHHHHhhhhccChHHHhhCCCC-CCCCCC
Q psy5701 86 EDIGGLEGVKRELQELVQPSLWSPSKVLMNEHA-MTHQVF 124 (125)
Q Consensus 86 ~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~-~p~Gvl 124 (125)
++|.|++++|+.|..++.+|++++.++..++.. +|+|||
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iL 54 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNIL 54 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEE
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEE
Confidence 469999999999999999999999998877664 567775
No 60
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=89.56 E-value=0.2 Score=35.25 Aligned_cols=37 Identities=19% Similarity=0.065 Sum_probs=32.4
Q ss_pred cccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCC
Q psy5701 85 WEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQ 122 (125)
Q Consensus 85 w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~G 122 (125)
|.+|.|++++|+.|.+.+.++. .+..++++|++++++
T Consensus 30 ~~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~ 66 (309)
T 3syl_A 30 DRELIGLKPVKDRIRETAALLL-VERARQKLGLAHETP 66 (309)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCC
T ss_pred HHHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCC
Confidence 4589999999999999999965 599999999988776
No 61
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=88.45 E-value=0.42 Score=34.38 Aligned_cols=48 Identities=10% Similarity=-0.029 Sum_probs=38.3
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhccc
Q psy5701 4 YNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKS 68 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~ 68 (125)
.+..|++.+.|.++.++..+|+.|+..|..+. ...|+.+|+.+|+..+
T Consensus 283 ~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~-----------------~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 283 AYTVLTRIGLETSLRYAIQLITAASLVCRKRK-----------------GTEVQVDDIKRVYSLF 330 (368)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT-----------------CSSBCHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-----------------CCCCCHHHHHHHHHHh
Confidence 36678888887899999999999988876542 2368999999999874
No 62
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=83.66 E-value=0.023 Score=50.34 Aligned_cols=102 Identities=13% Similarity=0.060 Sum_probs=53.3
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCCchhhhhcccCCcccccccch
Q psy5701 12 THGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGL 91 (125)
Q Consensus 12 T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps~~~~~~~~~~~v~w~digGl 91 (125)
..+|.+++|.. ++++++..+++.-+- .+.++.+......++ .|+....|+.+++.....|+++|++...+
T Consensus 614 w~~~~~~~l~q-g~e~~~~~l~~~p~~----~~ei~~~i~~~~~Vt-----~a~~~~~ps~L~e~~~~~~~v~~~~~~~i 683 (2050)
T 3cmu_A 614 WYSYKGEKIGQ-GKANATAWLKDNPET----AKEIEKKVRELLLSN-----PNSTTGSTGSMGHTTGAMSAIDENKQKAL 683 (2050)
T ss_dssp EEEETTEEEEE-SHHHHHHHHTTCHHH----HHHHHHHHHHHHCSS-----CCC----------------CCSTTHHHHH
T ss_pred eecccCCchHh-hHHHHHHHHHhChHH----HHHHHHHHHHhcccc-----hhcccCCHHHHHhhhccccCCcHHHHHHH
Confidence 44677777766 888888887653211 012222222222333 67778889999999999999999986777
Q ss_pred HHHHHHHHH-----------------HhhhhccChHHHhhCC---CCCCCCC
Q psy5701 92 EGVKRELQE-----------------LVQPSLWSPSKVLMNE---HAMTHQV 123 (125)
Q Consensus 92 ~~~k~~l~~-----------------~i~~P~~~p~~f~~~g---i~~p~Gv 123 (125)
..+.+.|.. ...+|.-++++..-+| +.|.+.|
T Consensus 684 ~~a~~~i~~~f~~~~~~~l~~~~~~~~~~i~TG~~eLD~llggGGl~~G~li 735 (2050)
T 3cmu_A 684 AAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIV 735 (2050)
T ss_dssp HHHHHHHHHHHCTTSEEEGGGCTTTSCCEECCSCHHHHHHHSSSSEETTSEE
T ss_pred HHHHHHHHHhhccccccchhhhhhcccceeecCChHHHHHhccCCcCCCcEE
Confidence 777776643 3346788899998884 6666544
No 63
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=80.73 E-value=1 Score=33.85 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=29.0
Q ss_pred cCCcccccccchHHHHHHHHHHhhhhccChHHHhhCCCCCCCCCC
Q psy5701 80 VPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQVF 124 (125)
Q Consensus 80 ~~~v~w~digGl~~~k~~l~~~i~~P~~~p~~f~~~gi~~p~Gvl 124 (125)
.++..|+++.|++++|+.+.+.+.+ + +.|..+|+|||
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~-~-------~~~~~~~~~iL 67 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVEL-I-------KSKKMAGRAVL 67 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHH-H-------HTTCCTTCEEE
T ss_pred ChhhchhhccCHHHHHHHHHHHHHH-H-------HhCCCCCCeEE
Confidence 4566799999999999999987754 1 34777888876
No 64
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.97 E-value=0.77 Score=35.14 Aligned_cols=48 Identities=8% Similarity=0.054 Sum_probs=35.6
Q ss_pred hcccCCcccccccchHHHHHHHHHHhh-hhccChHHHhhCCCC---CCCCCC
Q psy5701 77 IVEVPNITWEDIGGLEGVKRELQELVQ-PSLWSPSKVLMNEHA---MTHQVF 124 (125)
Q Consensus 77 ~~~~~~v~w~digGl~~~k~~l~~~i~-~P~~~p~~f~~~gi~---~p~Gvl 124 (125)
..+|...+|+++.|.+.+++.|++.+. |+..++..|++.|.. ++++||
T Consensus 30 ~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lL 81 (516)
T 1sxj_A 30 TVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAM 81 (516)
T ss_dssp HHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEE
T ss_pred ccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEE
Confidence 455677789999999999999998876 566666777777664 455543
No 65
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=76.64 E-value=0.33 Score=36.55 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=5.7
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHH
Q psy5701 3 YYNLGIAAETHGHVGADLASLCSE 26 (125)
Q Consensus 3 ~~l~~lA~~T~GfsgaDL~~L~~~ 26 (125)
.+|..+|.+|+| |+||.+||..
T Consensus 241 ~dl~~~a~~t~g--gadl~~l~~~ 262 (456)
T 2c9o_A 241 HDLDVANARPQG--GQDILSMMGQ 262 (456)
T ss_dssp HHHHHTC-----------------
T ss_pred HHHHHHHHhCCC--hhHHHHHHhh
Confidence 468899999999 9999999964
No 66
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=74.91 E-value=11 Score=24.70 Aligned_cols=43 Identities=5% Similarity=-0.097 Sum_probs=30.2
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhc
Q psy5701 5 NLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMG 66 (125)
Q Consensus 5 l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~ 66 (125)
+..|++.+.| ...++..+++.+...+..+ ...|+.+|+.++++
T Consensus 199 ~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~------------------~~~It~~~v~~~l~ 241 (242)
T 3bos_A 199 GRFLLNRMAR-DLRTLFDVLDRLDKASMVH------------------QRKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHTTT-CHHHHHHHHHHHHHHHHHH------------------TCCCCHHHHHHHHT
T ss_pred HHHHHHHccC-CHHHHHHHHHHHHHHHHHh------------------CCCCcHHHHHHHhh
Confidence 5667777766 6778888888777665322 12588999988875
No 67
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=63.29 E-value=3.3 Score=33.05 Aligned_cols=16 Identities=6% Similarity=0.208 Sum_probs=12.3
Q ss_pred ccccHHHHHHHhcccC
Q psy5701 54 LAVTMENFRYAMGKSS 69 (125)
Q Consensus 54 ~~i~~~Df~~Al~~~~ 69 (125)
..|+.+|+..++....
T Consensus 419 ~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 419 KTVNVADIESVVARIA 434 (758)
T ss_dssp CSCCHHHHHHHHHHHS
T ss_pred CccCHHHHHHHHHHhc
Confidence 3588999999887653
No 68
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=63.22 E-value=13 Score=20.07 Aligned_cols=18 Identities=11% Similarity=0.076 Sum_probs=14.1
Q ss_pred hcccccHHHHHHHhcccC
Q psy5701 52 ASLAVTMENFRYAMGKSS 69 (125)
Q Consensus 52 ~~~~i~~~Df~~Al~~~~ 69 (125)
....|+.+|+..|++.++
T Consensus 51 kRkTI~~~Di~~A~~~l~ 68 (68)
T 1b67_A 51 GRKTIKAEDIELARKMFK 68 (68)
T ss_dssp TCSEECHHHHHHHGGGGC
T ss_pred CCCccCHHHHHHHHHhcC
Confidence 345799999999998764
No 69
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=58.12 E-value=8.5 Score=27.10 Aligned_cols=42 Identities=24% Similarity=0.217 Sum_probs=19.8
Q ss_pred HHHhcccCCCchhhhhcccCCcccccccchHHHHHHHHHHhhhh
Q psy5701 62 RYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQPS 105 (125)
Q Consensus 62 ~~Al~~~~ps~~~~~~~~~~~v~w~digGl~~~k~~l~~~i~~P 105 (125)
.+|+..+.|+.... ...+..+|+++.|.+++++.+......|
T Consensus 2 ~~~~~~~~~~~~~~--~~~~~~~f~~i~G~~~~~~~l~~~~~~~ 43 (350)
T 1g8p_A 2 TTAVARLQPSASGA--KTRPVFPFSAIVGQEDMKLALLLTAVDP 43 (350)
T ss_dssp ------------------CCCCCGGGSCSCHHHHHHHHHHHHCG
T ss_pred CCcccccCCcccCC--CCCCCCCchhccChHHHHHHHHHHhhCC
Confidence 45677777776654 3345678999999999988876655443
No 70
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=56.32 E-value=6.8 Score=25.43 Aligned_cols=40 Identities=20% Similarity=0.127 Sum_probs=25.2
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhc
Q psy5701 5 NLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMG 66 (125)
Q Consensus 5 l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~ 66 (125)
+..|++.|.| ...++..+|+.|...+ .-.|+.+|+.+++.
T Consensus 210 ~~~l~~~~~G-~~~~~~~~~~~~~~~~---------------------~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 210 LQLLARAAEG-SLRDALSLTDQAIASG---------------------DGQVSTQAVSAMLG 249 (250)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHTTT---------------------TSSBCHHHHHHHSC
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHhcc---------------------CceecHHHHHHHhC
Confidence 5567777766 5666667766653211 11588889888764
No 71
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=52.81 E-value=7.6 Score=29.94 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=13.4
Q ss_pred cccccHHHHHHHhcccCC
Q psy5701 53 SLAVTMENFRYAMGKSSP 70 (125)
Q Consensus 53 ~~~i~~~Df~~Al~~~~p 70 (125)
...|+.+|+.+++...+-
T Consensus 326 ~~~It~~~l~~~Lg~~~~ 343 (543)
T 3m6a_A 326 RITVTEKNLQDFIGKRIF 343 (543)
T ss_dssp CCEECTTTTHHHHCSCCS
T ss_pred ceecCHHHHHHHhCCccc
Confidence 346889999999876543
No 72
>2xde_A GAG polyprotein, HIV-1 capsid; AIDS, viral protein; HET: 1B0; 1.40A {Human immunodeficiency virus 1} PDB: 1m9y_C 2x2d_D* 1m9x_C 1m9e_C 1m9f_C 1afv_A 1gwp_A 2pxr_C 2gol_B 1m9c_C 2x83_A 4e91_A* 4e92_A* 2pwo_A 2pwm_A 2gon_A 1ak4_C 2jpr_A* 1m9d_C 4dga_C ...
Probab=49.24 E-value=9.7 Score=24.36 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=19.3
Q ss_pred cccchHHHHHHHHHHh-----hhhccChH
Q psy5701 87 DIGGLEGVKRELQELV-----QPSLWSPS 110 (125)
Q Consensus 87 digGl~~~k~~l~~~i-----~~P~~~p~ 110 (125)
-+||...+++.|+++| +|-..||-
T Consensus 59 ~vgghqaamQ~lkd~INEeAaeWdr~HP~ 87 (145)
T 2xde_A 59 TVGGHQAAMQMLKETINEEAAEWDRLHPV 87 (145)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred hccchHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 3789899999888777 77777776
No 73
>3osj_A Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-biology; 2.30A {Synechocystis SP} PDB: 2l06_A
Probab=47.02 E-value=24 Score=22.58 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=33.4
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhccc
Q psy5701 11 ETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKS 68 (125)
Q Consensus 11 ~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~ 68 (125)
..++.+..|+..+++.|=.+-+-+............-..++..-.||..||.++|.+.
T Consensus 16 ~~~~~s~~e~~~vI~AaYRQVf~~~~~~~~~~r~~~lESql~nG~ItVReFIR~LakS 73 (147)
T 3osj_A 16 MKPGLSALEKNAVIKAAYRQIFERDITKAYSQSISYLESQVRNGDISMKEFVRRLAKS 73 (147)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHSSCCCGGGCHHHHHHHHHHHHTSSCHHHHHHHHHHS
T ss_pred ecCCCCHHHHHHHHHHHHHHHhcCcchhhhhcccccHHHHHHcCCccHHHHHHHHHcC
Confidence 3468999999999886654444321111000000111233444579999999998875
No 74
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=45.50 E-value=5 Score=27.32 Aligned_cols=12 Identities=33% Similarity=0.908 Sum_probs=1.8
Q ss_pred ccCCcccccccc
Q psy5701 79 EVPNITWEDIGG 90 (125)
Q Consensus 79 ~~~~v~w~digG 90 (125)
..+.++|+||||
T Consensus 200 ~~~~VtYeDIGG 211 (211)
T 3qwz_A 200 SLNEVGYDDIGG 211 (211)
T ss_dssp CCC---------
T ss_pred cCCCcceeCCCC
Confidence 467799999998
No 75
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=41.56 E-value=63 Score=22.74 Aligned_cols=51 Identities=12% Similarity=-0.055 Sum_probs=29.6
Q ss_pred hHHHHHHHcCCC--------CHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCCC
Q psy5701 4 YNLGIAAETHGH--------VGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPS 71 (125)
Q Consensus 4 ~l~~lA~~T~Gf--------sgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ps 71 (125)
.+..+++.|.+. ....+..+|+.|...+..+. ...|+.+|+..++..+...
T Consensus 219 ~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~-----------------~~~i~~~~v~~~~~~~~~~ 277 (389)
T 1fnn_A 219 ILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNG-----------------RKHIAPEDVRKSSKEVLFG 277 (389)
T ss_dssp HHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTT-----------------CSSCCHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhC-----------------CCCcCHHHHHHHHHHHhhh
Confidence 356677777322 34556777777776654321 1246667777666665444
No 76
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=40.22 E-value=51 Score=23.27 Aligned_cols=46 Identities=13% Similarity=-0.063 Sum_probs=28.4
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhccc
Q psy5701 5 NLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKS 68 (125)
Q Consensus 5 l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~ 68 (125)
+..||+++.|.. .++..+++.+...|..+. ...|+.+++.+|+...
T Consensus 205 ~~~ia~~~~G~~-R~a~~ll~~~~~~a~~~~-----------------~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 205 AEMIAKRSRGTP-RIAIRLTKRVRDMLTVVK-----------------ADRINTDIVLKTMEVL 250 (334)
T ss_dssp HHHHHHTSTTCH-HHHHHHHHHHHHHHHHHT-----------------CSSBCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCh-HHHHHHHHHHHHHHHHcC-----------------CCCcCHHHHHHHHHHh
Confidence 567788888754 677777777765553321 1246666666666654
No 77
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=39.96 E-value=77 Score=23.50 Aligned_cols=47 Identities=6% Similarity=-0.118 Sum_probs=33.2
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccCC
Q psy5701 5 NLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSP 70 (125)
Q Consensus 5 l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~p 70 (125)
+..||..+.| ...++..++..+...+... ...|+.+++.++++...+
T Consensus 288 l~~la~~~~g-n~R~l~~~L~~~~~~a~~~------------------~~~It~~~~~~~l~~~~~ 334 (440)
T 2z4s_A 288 LNFVAENVDD-NLRRLRGAIIKLLVYKETT------------------GKEVDLKEAILLLKDFIK 334 (440)
T ss_dssp HHHHHHHCCS-CHHHHHHHHHHHHHHHHHS------------------SSCCCHHHHHHHTSTTTC
T ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHHHHHh------------------CCCCCHHHHHHHHHHHhh
Confidence 5678888876 7888888888877655321 124778888888887653
No 78
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=39.54 E-value=54 Score=18.84 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhc
Q psy5701 20 LASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMG 66 (125)
Q Consensus 20 L~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~ 66 (125)
|..+++||..+|....... +...|+.+|+++.+.
T Consensus 45 l~iFV~EAv~RA~~~a~~e-------------~~~~le~e~LEki~p 78 (84)
T 4dra_E 45 LKVFVVEAAVRGVRQAQAE-------------DALRVDVDQLEKVLP 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHT-------------TCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc-------------CCCcccHHHHHHHHH
Confidence 5667888888777653221 233588888887653
No 79
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=36.67 E-value=60 Score=18.48 Aligned_cols=34 Identities=21% Similarity=0.186 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhc
Q psy5701 20 LASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMG 66 (125)
Q Consensus 20 L~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~ 66 (125)
|..+++||...|...... .+...|+.+|+++.+.
T Consensus 41 l~iFV~EAv~RA~~~a~~-------------e~~~~le~~~LEki~p 74 (81)
T 3b0b_C 41 LKVFVREAAARAARQAQA-------------EDLEKVDIEHVEKVLP 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH-------------TTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-------------CCCCeecHHHHHHHHH
Confidence 566777887777665321 1233578888887543
No 80
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=35.65 E-value=37 Score=16.64 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=14.4
Q ss_pred HHHcCCCCHHHHHHHHHH
Q psy5701 9 AAETHGHVGADLASLCSE 26 (125)
Q Consensus 9 A~~T~GfsgaDL~~L~~~ 26 (125)
|-+.+||+..+|.+|-.+
T Consensus 11 alkkegfspeelaalese 28 (48)
T 1g6u_A 11 ALKKEGFSPEELAALESE 28 (48)
T ss_dssp HHHHTTCSHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHH
Confidence 456799999999988654
No 81
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=35.00 E-value=57 Score=18.46 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=13.1
Q ss_pred cccccHHHHHHHhccc
Q psy5701 53 SLAVTMENFRYAMGKS 68 (125)
Q Consensus 53 ~~~i~~~Df~~Al~~~ 68 (125)
.-.|+.+|+..||+..
T Consensus 60 RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 60 RKTVTAMDVVYALKRQ 75 (84)
T ss_dssp CSEECHHHHHHHTTTT
T ss_pred CCcCcHHHHHHHHHHc
Confidence 3469999999999875
No 82
>3pru_C Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 1; structural genomics, PSI-biology; 2.68A {Synechocystis SP} PDB: 2l8v_A
Probab=34.63 E-value=61 Score=20.88 Aligned_cols=57 Identities=14% Similarity=0.120 Sum_probs=33.0
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhccc
Q psy5701 11 ETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKS 68 (125)
Q Consensus 11 ~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~ 68 (125)
..+|.+.+|+..+++.|=.+-+-+.. ....+.......++..-.||..||.++|.+.
T Consensus 11 ~~p~~s~~~~~~vI~AaYRQVfgn~~-~~~seR~~~lESql~nG~ItVReFVR~LakS 67 (154)
T 3pru_C 11 LRPDFSLDDAKMVIRAVYRQVLGNDY-IMDSERLKGAESLLTNGSISVREFVRTVAKS 67 (154)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHTTSCC-CCGGGSCHHHHHHHHHTSSCHHHHHHHHHTS
T ss_pred ecCCCCHHHHHHHHHHHHHHHhCCcc-ccccccccCHHHHHHcCCcCHHHHHHHHHcC
Confidence 56799999999888755443332210 0111111111233444569999999999875
No 83
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=33.36 E-value=16 Score=25.46 Aligned_cols=20 Identities=5% Similarity=0.027 Sum_probs=16.7
Q ss_pred hHHHHHHHcCCCCHHHHHHH
Q psy5701 4 YNLGIAAETHGHVGADLASL 23 (125)
Q Consensus 4 ~l~~lA~~T~GfsgaDL~~L 23 (125)
.+..+++.|+||+|+||..+
T Consensus 204 ~~~~l~~~~~~~~~~~l~~~ 223 (293)
T 3t15_A 204 PAEDVVKIVDNFPGQSIDFF 223 (293)
T ss_dssp CHHHHHHHHHHSCSCCHHHH
T ss_pred CHHHHHHHhCCCCcccHHHH
Confidence 35789999999999999753
No 84
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=33.22 E-value=53 Score=19.43 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=13.1
Q ss_pred cccccHHHHHHHhccc
Q psy5701 53 SLAVTMENFRYAMGKS 68 (125)
Q Consensus 53 ~~~i~~~Df~~Al~~~ 68 (125)
--.|+.+|+..||+..
T Consensus 78 RKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 78 RKTVTSLDVVYALKRQ 93 (102)
T ss_dssp CSEECHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHHHHc
Confidence 3469999999999875
No 85
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=32.51 E-value=14 Score=25.92 Aligned_cols=29 Identities=14% Similarity=0.300 Sum_probs=22.7
Q ss_pred cccCCcccccccchHHHHHHHHHHhhhhc
Q psy5701 78 VEVPNITWEDIGGLEGVKRELQELVQPSL 106 (125)
Q Consensus 78 ~~~~~v~w~digGl~~~k~~l~~~i~~P~ 106 (125)
..+...+|+++.|.+.+++.+...+....
T Consensus 21 ~~~~p~~~~~iiG~~~~~~~l~~~l~~~~ 49 (338)
T 3pfi_A 21 TSLRPSNFDGYIGQESIKKNLNVFIAAAK 49 (338)
T ss_dssp --CCCCSGGGCCSCHHHHHHHHHHHHHHH
T ss_pred hccCCCCHHHhCChHHHHHHHHHHHHHHH
Confidence 34555689999999999999999888753
No 86
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=31.61 E-value=90 Score=21.10 Aligned_cols=45 Identities=9% Similarity=-0.000 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccC
Q psy5701 14 GHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSS 69 (125)
Q Consensus 14 GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ 69 (125)
+..+..+..+|+.+...+.-+.... ......|+.+|+..+++...
T Consensus 256 ~g~~R~l~~~l~~~~~~~~~~~~~~-----------~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 256 NIGARRLHTVMERLMDKISFSASDM-----------NGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp CCTTHHHHHHHHHHSHHHHHHGGGC-----------TTCEEEECHHHHHHHTCSSS
T ss_pred ccCcHHHHHHHHHHHHhhhcCCccc-----------cCCEEEEeeHHHHHHHHhhh
Confidence 4556666666666554432221100 01223599999999998763
No 87
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=29.73 E-value=65 Score=17.35 Aligned_cols=15 Identities=20% Similarity=0.383 Sum_probs=11.4
Q ss_pred hcccccHHHHHHHhc
Q psy5701 52 ASLAVTMENFRYAMG 66 (125)
Q Consensus 52 ~~~~i~~~Df~~Al~ 66 (125)
+...|+.+|+..|++
T Consensus 55 kRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 55 GRKTVKVEDIKLAIK 69 (70)
T ss_dssp TCSEECHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHH
Confidence 344688999998875
No 88
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=29.53 E-value=1.3e+02 Score=20.82 Aligned_cols=37 Identities=14% Similarity=-0.023 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhcccC
Q psy5701 16 VGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSS 69 (125)
Q Consensus 16 sgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~~ 69 (125)
+...+..+|+.|...|..+ +...|+.+|+.+|+..+-
T Consensus 287 ~~R~~~~ll~~a~~~A~~~-----------------~~~~v~~~~v~~a~~~~l 323 (350)
T 1g8p_A 287 GLRGELTLLRSARALAALE-----------------GATAVGRDHLKRVATMAL 323 (350)
T ss_dssp SHHHHHHHHHHHHHHHHHT-----------------TCSBCCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHc-----------------CCCcCCHHHHHHHHHHHH
Confidence 4466666666665544322 122588999999888653
No 89
>4g6v_B CDII; tRNAse, toxin, immunity; 2.64A {Burkholderia pseudomallei 1026A}
Probab=29.32 E-value=15 Score=21.80 Aligned_cols=19 Identities=5% Similarity=-0.345 Sum_probs=11.3
Q ss_pred ccChHHHh-hCCCCCCCCCCC
Q psy5701 106 LWSPSKVL-MNEHAMTHQVFD 125 (125)
Q Consensus 106 ~~~p~~f~-~~gi~~p~Gvl~ 125 (125)
-+||++|. .+-+.+| +|||
T Consensus 25 ~kyseIF~~~y~i~~~-~~ld 44 (111)
T 4g6v_B 25 SNHSELFEGKFLISPV-RDAD 44 (111)
T ss_dssp HHCHHHHTTTEEECCC-EECC
T ss_pred HhChhhcCCeEEEecc-ccCC
Confidence 47788874 3445555 6654
No 90
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=29.17 E-value=83 Score=17.86 Aligned_cols=35 Identities=6% Similarity=0.033 Sum_probs=25.3
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Q psy5701 3 YYNLGIAAETHGHVGADLASLCSEAALQQIREKMDL 38 (125)
Q Consensus 3 ~~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~ 38 (125)
.+++.||+++.|++-+|...++. +....+.+.+..
T Consensus 5 eli~~ia~~~~~ls~~~~~~~l~-~~~~~i~~~L~~ 39 (94)
T 1owf_B 5 ELIERLATQQSHIPAKTVEDAVK-EMLEHMASTLAQ 39 (94)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHH-HHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCHHHHHHHHH-HHHHHHHHHHhC
Confidence 36788999878999999998875 444555555443
No 91
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=28.20 E-value=34 Score=17.69 Aligned_cols=19 Identities=42% Similarity=0.650 Sum_probs=15.6
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy5701 13 HGHVGADLASLCSEAALQQ 31 (125)
Q Consensus 13 ~GfsgaDL~~L~~~A~~~a 31 (125)
-|=-|.+|..||.+|+..+
T Consensus 30 ggggggelmklceeaakka 48 (62)
T 2i7u_A 30 GGGGGGELMKLCEEAAKKA 48 (62)
T ss_dssp SCSSSCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHH
Confidence 3566889999999998765
No 92
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=27.42 E-value=83 Score=17.30 Aligned_cols=17 Identities=18% Similarity=-0.099 Sum_probs=12.8
Q ss_pred hcccccHHHHHHHhccc
Q psy5701 52 ASLAVTMENFRYAMGKS 68 (125)
Q Consensus 52 ~~~~i~~~Df~~Al~~~ 68 (125)
..-.|+.+|+..|++.+
T Consensus 54 ~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 54 KSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp TCSSBCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 34468999999888754
No 93
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=27.25 E-value=27 Score=26.80 Aligned_cols=31 Identities=26% Similarity=0.271 Sum_probs=23.9
Q ss_pred hcccCCcccccccchHHHHHHHHHHhhhhcc
Q psy5701 77 IVEVPNITWEDIGGLEGVKRELQELVQPSLW 107 (125)
Q Consensus 77 ~~~~~~v~w~digGl~~~k~~l~~~i~~P~~ 107 (125)
.....+.-++|+.|++++|+.+.+.+.++-.
T Consensus 72 ~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~ 102 (543)
T 3m6a_A 72 LKEAGRLLDEEHHGLEKVKERILEYLAVQKL 102 (543)
T ss_dssp TTTGGGTHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 3444556789999999999999988876543
No 94
>2k1v_A Insulin-like peptide INSL5; peptide hormone, relaxin-3, chimera, cleavage on PAIR of basic residues, secreted, signaling protein; HET: PCA; NMR {Synthetic} PDB: 2kbc_A*
Probab=26.72 E-value=7.5 Score=17.26 Aligned_cols=15 Identities=40% Similarity=0.629 Sum_probs=11.5
Q ss_pred HcCCCCHHHHHHHHH
Q psy5701 11 ETHGHVGADLASLCS 25 (125)
Q Consensus 11 ~T~GfsgaDL~~L~~ 25 (125)
-+.|-+-+||..||.
T Consensus 8 C~~GCsmsDLs~lC~ 22 (26)
T 2k1v_A 8 CTDGCSMTDLSALCX 22 (26)
T ss_dssp HHTCBCHHHHTTTC-
T ss_pred HHcCCcHHHHHHHHh
Confidence 357889999988875
No 95
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=26.08 E-value=1e+02 Score=21.56 Aligned_cols=46 Identities=20% Similarity=-0.021 Sum_probs=25.5
Q ss_pred HHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhccc
Q psy5701 5 NLGIAAETH---GHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKS 68 (125)
Q Consensus 5 l~~lA~~T~---GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~ 68 (125)
+..+++.+. |. ...+..+|+.|...+..+ +...|+.+|+..|+...
T Consensus 228 ~~~l~~~~~~~~G~-~r~~~~~l~~a~~~a~~~-----------------~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 228 VPLCAALAAREHGD-ARRALDLLRVAGEIAERR-----------------REERVRREHVYSARAEI 276 (387)
T ss_dssp HHHHHHHHHSSSCC-HHHHHHHHHHHHHHHHHT-----------------TCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-HHHHHHHHHHHHHHHHHc-----------------CCCCcCHHHHHHHHHHH
Confidence 344555555 53 445667777776554322 11246667777666655
No 96
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=25.41 E-value=45 Score=23.35 Aligned_cols=15 Identities=20% Similarity=0.029 Sum_probs=9.7
Q ss_pred cccHHHHHHHhcccC
Q psy5701 55 AVTMENFRYAMGKSS 69 (125)
Q Consensus 55 ~i~~~Df~~Al~~~~ 69 (125)
.|+.+|+..|+..+.
T Consensus 259 ~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 259 KVKEEYVYMAKEEIE 273 (386)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHh
Confidence 467777776666554
No 97
>3nph_B Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 2; PFAM00427 domain, linker protein, phycobiliprotein, photosyn; 1.85A {Synechocystis SP} PDB: 2l3w_A
Probab=22.00 E-value=1.6e+02 Score=18.82 Aligned_cols=57 Identities=12% Similarity=0.137 Sum_probs=33.5
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHhhhcCccchhchHHhhhcccccHHHHHHHhccc
Q psy5701 11 ETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKS 68 (125)
Q Consensus 11 ~T~GfsgaDL~~L~~~A~~~al~~~~~~~~~~~~~~~~~~~~~~~i~~~Df~~Al~~~ 68 (125)
..+|.+.+|+..+++.|=.+-+-+. .....+.......++..-.||..||.++|.+.
T Consensus 6 l~~~~s~~~~~~vI~AaYrQVfgn~-~~~~seR~~~lESqLrnG~ItVReFVR~LakS 62 (148)
T 3nph_B 6 LRSRSTEEEVDAVILAVYRQVLGND-HLMSQERLTSAESLLRGREISVRDFVRAVALS 62 (148)
T ss_dssp BCSSSCSHHHHHHHHHHHHHHHSCS-CCCTTTSCHHHHHHHHTTSSCHHHHHHHHHTS
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCc-ccccccccccHHHHHhcCCccHHHHHHHHHcc
Confidence 4678899999988885544433221 00111111112234455579999999999875
No 98
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=21.81 E-value=1.2e+02 Score=17.01 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=23.7
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Q psy5701 3 YYNLGIAAETHGHVGADLASLCSEAALQQIREKMDL 38 (125)
Q Consensus 3 ~~l~~lA~~T~GfsgaDL~~L~~~A~~~al~~~~~~ 38 (125)
.+++.||++| |++-+|...++. +....+.+.+..
T Consensus 5 eli~~ia~~~-~ls~~~~~~~l~-~~~~~i~~~L~~ 38 (90)
T 1b8z_A 5 ELIDRVAKKA-GAKKKDVKLILD-TILETITEALAK 38 (90)
T ss_dssp HHHHHHHHHH-TCCHHHHHHHHH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHh-CcCHHHHHHHHH-HHHHHHHHHHhC
Confidence 3577888876 899999998875 444555555443
No 99
>1tqe_X Histone deacetylase 9; MEF2, HDAC, CO-repressor, transcription, transcription/protein binding/DNA complex; 2.70A {Mus musculus}
Probab=20.43 E-value=44 Score=14.65 Aligned_cols=13 Identities=38% Similarity=0.547 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhhh
Q psy5701 92 EGVKRELQELVQP 104 (125)
Q Consensus 92 ~~~k~~l~~~i~~ 104 (125)
.++|++|++.|.-
T Consensus 9 teVKqkLqefll~ 21 (26)
T 1tqe_X 9 TEVKQKLQEFLLS 21 (26)
T ss_dssp SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4688889887653
No 100
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens}
Probab=20.17 E-value=1.2e+02 Score=19.50 Aligned_cols=20 Identities=10% Similarity=-0.001 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy5701 14 GHVGADLASLCSEAALQQIR 33 (125)
Q Consensus 14 GfsgaDL~~L~~~A~~~al~ 33 (125)
.|+..|+..|+.=|++.|+-
T Consensus 134 ~Fs~dEiALL~SLAahAAIA 153 (162)
T 3eea_A 134 PFSDAETAIIRDLVSHAALV 153 (162)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 59999999999999988873
No 101
>2e8m_A Epidermal growth factor receptor kinase substrate 8; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.06 E-value=37 Score=20.23 Aligned_cols=24 Identities=25% Similarity=0.073 Sum_probs=18.2
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHH
Q psy5701 5 NLGIAAETHGHVGADLASLCSEAA 28 (125)
Q Consensus 5 l~~lA~~T~GfsgaDL~~L~~~A~ 28 (125)
-...++.-.+|+|+||..|-++-.
T Consensus 49 S~~tv~~Lg~ltGaqLl~Ltk~eL 72 (99)
T 2e8m_A 49 NPVTVNSLGVLNGAQLFSLNKDEL 72 (99)
T ss_dssp CHHHHHHTSSSCHHHHHHCCHHHH
T ss_pred CHHHHHHHcCCCHHHHHcCCHHHH
Confidence 345678888999999988866554
Done!