RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5701
(125 letters)
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 150 bits (380), Expect = 1e-44
Identities = 63/88 (71%), Positives = 77/88 (87%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGK 67
+A ETHGHVGADLA+LCSEAALQ IR+KMDLIDLED+ IDAE++ SLAVTM++FR+A+ +
Sbjct: 399 VANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ 458
Query: 68 SSPSALRETIVEVPNITWEDIGGLEGVK 95
S+PSALRET+VEVP +TWEDIGG
Sbjct: 459 SNPSALRETVVEVPQVTWEDIGGRSHHH 486
Score = 46.3 bits (110), Expect = 4e-07
Identities = 11/61 (18%), Positives = 23/61 (37%)
Query: 49 EILASLAVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQPSLWS 108
E S + + P + + + ++DIGG +++E+V+ L
Sbjct: 167 ETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRH 226
Query: 109 P 109
P
Sbjct: 227 P 227
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 140 bits (355), Expect = 4e-40
Identities = 75/96 (78%), Positives = 89/96 (92%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGK 67
+A ETHGHVGADLA+LCSEAALQ IR+KMDLIDLED+ IDAE++ SLAVTM++FR+A+ +
Sbjct: 399 VANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ 458
Query: 68 SSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQ 103
S+PSALRET+VEVP +TWEDIGGLE VKRELQELVQ
Sbjct: 459 SNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQ 494
Score = 72.1 bits (177), Expect = 3e-16
Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 19/103 (18%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDA--------EILASLAVTME 59
+A T+G GADL +C A IRE ++ + + E + +
Sbjct: 675 LAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRD 734
Query: 60 NFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELV 102
+F AM + S ++ DI E + LQ+
Sbjct: 735 HFEEAMRFARRS-----------VSDNDIRKYEMFAQTLQQSR 766
Score = 49.0 bits (117), Expect = 5e-08
Identities = 8/58 (13%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 52 ASLAVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQPSLWSP 109
+ + + + P + + + ++D+GG +++E+V+ L P
Sbjct: 171 SPYCIVAPDTVIHC-EGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHP 227
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 65.7 bits (161), Expect = 4e-14
Identities = 28/32 (87%), Positives = 30/32 (93%)
Query: 72 ALRETIVEVPNITWEDIGGLEGVKRELQELVQ 103
ALRET+VEVP +TWEDIGGLE VKRELQELVQ
Sbjct: 1 ALRETVVEVPQVTWEDIGGLEDVKRELQELVQ 32
Score = 65.7 bits (161), Expect = 4e-14
Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 19/100 (19%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMD--------LIDLEDDQIDAEILASLAVTME 59
+A T+G GADL +C A IRE ++ E + +
Sbjct: 213 LAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRD 272
Query: 60 NFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQ 99
+F AM + S ++ DI E + LQ
Sbjct: 273 HFEEAMRFARRS-----------VSDNDIRKYEMFAQTLQ 301
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 60.6 bits (147), Expect = 3e-12
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 52 ASLAVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQPSLWSP 109
S +N K + + E PN+ WED+ GLEG K L+E V + P
Sbjct: 17 ISQEEGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFP 74
Score = 49.4 bits (118), Expect = 3e-08
Identities = 18/98 (18%), Positives = 41/98 (41%), Gaps = 26/98 (26%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMD--------------------------LIDL 41
+ A T G+ G+D+A + +A +Q IR+ I++
Sbjct: 245 LGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEM 304
Query: 42 EDDQIDAEILASLAVTMENFRYAMGKSSPSALRETIVE 79
I+A+ L +T+++F A+ + P+ + +++
Sbjct: 305 SWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLK 342
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 59.1 bits (144), Expect = 8e-12
Identities = 14/70 (20%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 6 LGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAM 65
+ + GADL++L EA++ +R++M +++ + + V+ ++F A
Sbjct: 208 IAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELK------VSHKHFEEAF 261
Query: 66 GKSSPSALRE 75
K S ++
Sbjct: 262 KKVRSSISKK 271
Score = 55.6 bits (135), Expect = 2e-10
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 78 VEVPNITWEDIGGLEGVKRELQELVQ 103
+ VPN+TW DIG LE ++ EL +
Sbjct: 2 MTVPNVTWADIGALEDIREELTMAIL 27
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 58.1 bits (141), Expect = 2e-11
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 73 LRETIVEVPNITWEDIGGLEGVKRELQELVQPSLWSP 109
+ E PN+ WED+ GLEG K L+E V + P
Sbjct: 5 FTAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFP 41
Score = 48.9 bits (117), Expect = 4e-08
Identities = 18/98 (18%), Positives = 41/98 (41%), Gaps = 26/98 (26%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMD--------------------------LIDL 41
+ A T G+ G+D+A + +A +Q IR+ I++
Sbjct: 212 LGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEM 271
Query: 42 EDDQIDAEILASLAVTMENFRYAMGKSSPSALRETIVE 79
I+A+ L +T+++F A+ + P+ + +++
Sbjct: 272 SWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLK 309
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 58.4 bits (141), Expect = 2e-11
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 64 AMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQPSLWSP 109
K ++E PN+ W D+ GLEG K L+E V + P
Sbjct: 112 EKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFP 157
Score = 48.4 bits (115), Expect = 7e-08
Identities = 17/97 (17%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGK 67
+ +T G+ GAD++ + +A +Q +R+ ++ A + +
Sbjct: 329 LGRKTDGYSGADISIIVRDALMQPVRKVQS--ATHFKKVRGPSRADPNCIVNDLLTPCSP 386
Query: 68 SSPSALRETIVEV-------PNITWED-IGGLEGVKR 96
P A+ T ++V P ++ D + L K
Sbjct: 387 GDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKP 423
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 57.5 bits (139), Expect = 5e-11
Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 2/91 (2%)
Query: 14 GHVGADLASLCSEAA--LQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPS 71
+ G + S + + + + + ++NFR +
Sbjct: 41 SYSGLSMVSGVKQGSGPAPTTHKGTPKTNRTNKPSTPTTATRKKKDLKNFRNVDSNLANL 100
Query: 72 ALRETIVEVPNITWEDIGGLEGVKRELQELV 102
+ E + + ++DI G + K+ LQE+V
Sbjct: 101 IMNEIVDNGTAVKFDDIAGQDLAKQALQEIV 131
Score = 52.9 bits (127), Expect = 2e-09
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIRE--KMDLIDLEDDQIDAEILASLAVTMENFRYAM 65
+A T G+ G+DL +L +AAL IRE + ++ ++ + + +F ++
Sbjct: 310 LARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMR-------NIRLSDFTESL 362
Query: 66 GKSSPSALRETIVEVPNITWEDIGGLEGV 94
K S +T+ I W G V
Sbjct: 363 KKIKRSVSPQTLEAY--IRWNKDFGDTTV 389
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 52.5 bits (126), Expect = 3e-09
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 9/74 (12%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKM--DLIDLEDDQIDAEILASLAVTMENFRYAM 65
I ++ GAD+ LC EA+L IR D+ + DQ+ + +F A
Sbjct: 279 IVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVR-------PIAYIDFENAF 331
Query: 66 GKSSPSALRETIVE 79
PS + +
Sbjct: 332 RTVRPSVSPKDLEL 345
Score = 49.4 bits (118), Expect = 3e-08
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 73 LRETIVEVPNITWEDIGGLEGVKRELQELV 102
+ E + P + WEDI G+E K ++E+V
Sbjct: 71 MNEIMDHGPPVNWEDIAGVEFAKATIKEIV 100
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 52.0 bits (125), Expect = 3e-09
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 77 IVEVPNITWEDIGGLEGVKRELQELVQPSLWSP 109
++E PN+ W D+ GLEG K L+E V + P
Sbjct: 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFP 35
Score = 48.9 bits (117), Expect = 5e-08
Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGK 67
+ +T G+ GAD++ + +A +Q +R+ ++ A +++
Sbjct: 207 LGRKTDGYSGADISIIVRDALMQPVRKVQS--ATHFKKVRGPSRADPNHLVDDLLTPCSP 264
Query: 68 SSPSALRETIVE-------VPNITWED 87
P A+ T ++ P ++ D
Sbjct: 265 GDPGAIEMTWMDVPGDKLLEPVVSMSD 291
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding,
hydrolase; 2.70A {Drosophila melanogaster}
Length = 297
Score = 50.4 bits (121), Expect = 1e-08
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIRE--KMDLIDLEDDQIDAEILASLAVTMENFRYAM 65
+A T G+ G+DL +L +AAL+ IRE + L+ + A+T ++F ++
Sbjct: 217 LAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMR-------AITEQDFHSSL 269
Query: 66 GKSSPSALRETIVE 79
+ S +++
Sbjct: 270 KRIRRSVAPQSLNS 283
Score = 50.4 bits (121), Expect = 1e-08
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 70 PSALRETIVEVPNITWEDIGGLEGVKRELQELV 102
L E + + W DI G + K+ LQE+V
Sbjct: 5 QLILDEIVEGGAKVEWTDIAGQDVAKQALQEMV 37
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 49.2 bits (118), Expect = 3e-08
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMDLIDLED-DQIDAEILASLAVTMENFRY 63
IA T G VGA+L ++C+EA + IRE D + ++D + +I+ V ++ +
Sbjct: 215 IAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEKKKVKVKEPAH 271
Score = 41.1 bits (97), Expect = 2e-05
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 76 TIVEVPNITWEDIGGLEGVKRELQELVQPSLWSP 109
+ E PN+ +EDIGGLE +E++E+V+ L P
Sbjct: 7 EVDERPNVRYEDIGGLEKQMQEIREVVELPLKHP 40
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat,
chaperone, chaperone-protein binding complex; HET: DNA;
3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Length = 88
Score = 42.2 bits (100), Expect = 2e-06
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMDLIDLED 43
I+ GA+L S+C+EA + IR + + +D
Sbjct: 28 ISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKD 63
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.10A {Homo sapiens}
Length = 78
Score = 41.7 bits (99), Expect = 2e-06
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMDLIDLED 43
IA G GA++ +C+EA + +RE+ + ED
Sbjct: 30 IAELMPGASGAEVKGVCTEAGMYALRERRVHVTQED 65
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast
structural genomics consortium (NESG), target HR3102A,
PSI-2; NMR {Homo sapiens}
Length = 86
Score = 41.7 bits (99), Expect = 2e-06
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMDLIDLED 43
IA G GA++ +C+EA + +RE+ + ED
Sbjct: 38 IAELMPGASGAEVKGVCTEAGMYALRERRVHVTQED 73
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin,
S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB:
2dwz_B* 2dvw_B*
Length = 83
Score = 39.2 bits (92), Expect = 2e-05
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMDLIDLED 43
A GAD+ S+C E+ + +RE ++ +D
Sbjct: 28 YVARPDKISGADINSICQESGMLAVRENRYIVLAKD 63
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} PDB: 2dzo_B
Length = 82
Score = 39.3 bits (92), Expect = 2e-05
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMDLIDLED 43
+ GA +A++ EA L+ +R+ +I D
Sbjct: 25 LIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSD 60
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 41.1 bits (97), Expect = 2e-05
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMDLIDLED 43
+A T G GAD+A++C+EAAL RE + +
Sbjct: 206 LAELTPGFSGADIANICNEAALHAAREGHTSVHTLN 241
Score = 28.7 bits (65), Expect = 0.40
Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 82 NITWEDIGGLEGVKRELQELVQPSLWSPSK 111
++++D+ G+ K E++E V L SP +
Sbjct: 2 GVSFKDVAGMHEAKLEVREFVD-YLKSPER 30
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 40.3 bits (95), Expect = 4e-05
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMDLIDLED 43
+A T G GADLA++ +EAAL R + +
Sbjct: 210 VAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQH 245
Score = 28.8 bits (65), Expect = 0.44
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 79 EVPNITWEDIGGLEGVKRELQELVQPSLWSPSK 111
E PN+ ++D+ G E K E+ E+V L P +
Sbjct: 4 EKPNVRFKDMAGNEEAKEEVVEIVD-FLKYPER 35
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 38.5 bits (90), Expect = 2e-04
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMDLIDLED 43
+A T G VGADL +L +EAAL RE I ++D
Sbjct: 213 LAKRTPGFVGADLENLLNEAALLAAREGRRKITMKD 248
Score = 28.8 bits (65), Expect = 0.44
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 79 EVPNITWEDIGGLEGVKRELQELVQPSLWSPSK 111
E P +T++D+ G E K EL+E+V+ L +PS+
Sbjct: 9 EAPKVTFKDVAGAEEAKEELKEIVE-FLKNPSR 40
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 38.1 bits (89), Expect = 2e-04
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMDLIDLED 43
+A T G VGADL +L +EAAL RE I ++D
Sbjct: 237 LAKRTPGFVGADLENLLNEAALLAAREGRRKITMKD 272
Score = 30.4 bits (69), Expect = 0.10
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 66 GKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQPSLWSPSK 111
KS L E P +T++D+ G E K EL+E+V+ L +PS+
Sbjct: 24 TKSRARVLTEA----PKVTFKDVAGAEEAKEELKEIVE-FLKNPSR 64
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 38.1 bits (89), Expect = 2e-04
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMDLIDLED 43
IA T G GADLA+L +EAAL R ++ + +
Sbjct: 209 IARGTPGFSGADLANLVNEAALFAARGNKRVVSMVE 244
Score = 28.4 bits (64), Expect = 0.58
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 81 PNITWEDIGGLEGVKRELQELVQPSLWSPSK 111
T+ D+ G + K E+ ELV+ L PS+
Sbjct: 7 IKTTFADVAGCDEAKEEVAELVE-YLREPSR 36
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 37.9 bits (89), Expect = 3e-04
Identities = 19/36 (52%), Positives = 23/36 (63%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMDLIDLED 43
IA T G VGADL +L +EAAL RE D I ++D
Sbjct: 213 IAKRTPGFVGADLENLVNEAALLAAREGRDKITMKD 248
Score = 27.1 bits (61), Expect = 1.8
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 81 PNITWEDIGGLEGVKRELQELVQPSLWSPSK 111
+T++D+GG E EL+E+V+ L PSK
Sbjct: 11 KRVTFKDVGGAEEAIEELKEVVE-FLKDPSK 40
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 38.0 bits (89), Expect = 3e-04
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 8 IAAETHGHVGADLASLCSEAALQQIREKMDLIDLED 43
+A T G VGADL +L +EAAL RE I ++D
Sbjct: 228 LAKRTPGFVGADLENLLNEAALLAAREGRRKITMKD 263
Score = 28.3 bits (64), Expect = 0.61
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 79 EVPNITWEDIGGLEGVKRELQELVQPSLWSPSK 111
E P +T++D+ G E K EL+E+V+ L +PS+
Sbjct: 24 EAPKVTFKDVAGAEEAKEELKEIVE-FLKNPSR 55
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.040
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 17/45 (37%)
Query: 34 EKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPS-ALRETI 77
EK L L+ ASL + YA + P+ A++ T+
Sbjct: 18 EKQALKKLQ---------ASLKL------YADDSA-PALAIKATM 46
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 28.2 bits (63), Expect = 0.73
Identities = 3/38 (7%), Positives = 11/38 (28%), Gaps = 3/38 (7%)
Query: 8 IAAETHGHVGADLASLC---SEAALQQIREKMDLIDLE 42
+ G + + ++R+ + +E
Sbjct: 208 VVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIE 245
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 28.2 bits (63), Expect = 0.76
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Query: 8 IAAETHGH---VGADLASLCSEAALQQIRE 34
IA + G +G + E +LQ E
Sbjct: 222 IAQQVKGKKVWIGIKKLLMLIEMSLQMDPE 251
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding,
transport protein; HET: MLY; 2.00A {Homo sapiens} PDB:
2pjh_B
Length = 211
Score = 26.6 bits (58), Expect = 2.2
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 70 PSALRETIVEVPNITWEDIGG 90
P + + + ++DIGG
Sbjct: 191 PIKREDEEESLNEVGYDDIGG 211
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 2.7
Identities = 19/148 (12%), Positives = 40/148 (27%), Gaps = 62/148 (41%)
Query: 20 LASLCSEAA--LQQIREK-----------MDLID-LE--DDQIDAEILASLAVTM----- 58
+ L +A L ++ +++++ LE + D + L S+ ++
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV 243
Query: 59 ------ENFRYAMGKSSPSALRE----TIVEVPNI----------TWED----------- 87
+G +P LR + +WE
Sbjct: 244 IQLAHYVVTAKLLGF-TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 88 ---IGGLEGVKRELQELVQPSLWSPSKV 112
I G+ E + PS +
Sbjct: 303 LFFI-GVRC-----YEAYPNTSLPPSIL 324
Score = 26.2 bits (57), Expect = 3.6
Identities = 24/115 (20%), Positives = 37/115 (32%), Gaps = 42/115 (36%)
Query: 23 LCSEAALQQIREKMDLIDLEDDQIDA-----EI--LASLAVTME--------NFR----- 62
L +AA + ++ K LI D A E LASLA M +R
Sbjct: 1738 LMEKAAFEDLKSK-GLIP--ADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQ 1794
Query: 63 ------------YAMGKSSPSALRETIVEVPNITWEDIGGL-EGVKRELQELVQP 104
Y M +P + + + E + + E V + LV+
Sbjct: 1795 VAVPRDELGRSNYGMIAINPGRVAASFSQ------EALQYVVERVGKRTGWLVEI 1843
Score = 25.4 bits (55), Expect = 6.7
Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 35/110 (31%)
Query: 5 NLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMENF--- 61
N G+ A G V A S+ ALQ + E+ + + EI V N+
Sbjct: 1806 NYGMIAINPGRVAAS----FSQEALQYVVER---VGKRTGWL-VEI-----V---NYNVE 1849
Query: 62 --RYAM-GKSSPSALRETIVEVPNITWEDIGGLEGVKR-ELQEL-VQPSL 106
+Y G AL +T+ V N +++ ++ EL SL
Sbjct: 1850 NQQYVAAGDL--RAL-DTVTNVLNFI--------KLQKIDIIELQKSLSL 1888
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA
glycosylase, transition state analog, DNA repair; HET:
NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A*
1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Length = 369
Score = 26.5 bits (59), Expect = 2.8
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 79 EVPNITWEDIGGLEGVKRELQELVQPSLWSPSKVLMNEHAMTHQ 122
E P+ + G E +++ + E + ++ EHA +H
Sbjct: 270 EFPSCETDGADGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSHL 313
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated
sodium-selective ION C membrane, metal transport; HET:
PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A*
Length = 285
Score = 25.5 bits (56), Expect = 5.1
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 54 LAVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQPSL 106
+A+ ++ K + E NI +I L EL+EL++ SL
Sbjct: 232 VAICVDAMAILNQKEEQHIIDEVQSHEDNIN-NEIIKLREEIVELKELIKTSL 283
>1ybz_A Chorismate mutase; conserved hypothetical protein,
hyperthermophIle, structural genomics, PSI, protein
structu initiative; 1.82A {Pyrococcus furiosus} SCOP:
a.130.1.1
Length = 91
Score = 24.2 bits (53), Expect = 8.5
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 13 HGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLA 55
H H +L L+ +R+++ D+ID +I++ L
Sbjct: 3 HHHHHENLYFQAGSTTLKLLRKEI-------DKIDNQIISLLK 38
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 25.1 bits (54), Expect = 8.7
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 75 ETIVEVPNITWEDIGGLEGVKRELQELV 102
EV ++ GL+ VK ++E
Sbjct: 20 SGAKEVLEELDRELIGLKPVKDRIRETA 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.373
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,969,503
Number of extensions: 111955
Number of successful extensions: 336
Number of sequences better than 10.0: 1
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 69
Length of query: 125
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,412,271
Effective search space: 189727653
Effective search space used: 189727653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.3 bits)