RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5701
         (125 letters)



>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 258

 Score = 69.3 bits (168), Expect = 7e-16
 Identities = 44/67 (65%), Positives = 55/67 (82%)

Query: 1   MMYYNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMEN 60
                  +A ETHGHVGADLA+LCSEAALQ IR+KMDLIDLED+ IDAE++ SLAVTM++
Sbjct: 192 DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDD 251

Query: 61  FRYAMGK 67
           FR+A+ +
Sbjct: 252 FRWALSQ 258



 Score = 39.6 bits (91), Expect = 3e-05
 Identities = 7/29 (24%), Positives = 17/29 (58%)

Query: 83  ITWEDIGGLEGVKRELQELVQPSLWSPSK 111
           + ++D+GG      +++E+V+  L  P+ 
Sbjct: 1   VGYDDVGGCRKQLAQIKEMVELPLRHPAL 29


>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
           {Thermus thermophilus [TaxId: 274]}
          Length = 247

 Score = 46.8 bits (111), Expect = 7e-08
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 79  EVPNITWEDIGGLEGVKRELQELVQP 104
           E P +T++D+ G E  K EL+E+V+ 
Sbjct: 2   EAPKVTFKDVAGAEEAKEELKEIVEF 27



 Score = 44.5 bits (105), Expect = 4e-07
 Identities = 17/36 (47%), Positives = 22/36 (61%)

Query: 8   IAAETHGHVGADLASLCSEAALQQIREKMDLIDLED 43
           +A  T G VGADL +L +EAAL   RE    I ++D
Sbjct: 206 LAKRTPGFVGADLENLLNEAALLAAREGRRKITMKD 241


>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 265

 Score = 47.1 bits (111), Expect = 7e-08
 Identities = 23/32 (71%), Positives = 25/32 (78%)

Query: 80  VPNITWEDIGGLEGVKRELQELVQPSLWSPSK 111
           VP +TWEDIGGLE VKRELQELVQ  +  P K
Sbjct: 1   VPQVTWEDIGGLEDVKRELQELVQYPVEHPDK 32



 Score = 42.1 bits (98), Expect = 3e-06
 Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 1   MMYYNLGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDAEILASLAVTMEN 60
                  +A  T+G  GADL  +C  A    IRE ++  ++  ++      +++ V  ++
Sbjct: 198 KDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIE-SEIRRERERQTNPSAMEVEEDD 256

Query: 61  FRYAMGK 67
               + +
Sbjct: 257 PVPEIRR 263


>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
           {Escherichia coli [TaxId: 562]}
          Length = 256

 Score = 43.3 bits (102), Expect = 1e-06
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 8   IAAETHGHVGADLASLCSEAALQQIREKMDLIDLED 43
           IA  T G  GADLA+L +EAAL   R    ++ + +
Sbjct: 209 IARGTPGFSGADLANLVNEAALFAARGNKRVVSMVE 244



 Score = 42.1 bits (99), Expect = 3e-06
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 79  EVPNITWEDIGGLEGVKRELQELVQPSLWSPSK 111
           +    T+ D+ G +  K E+ ELV+  L  PS+
Sbjct: 5   DQIKTTFADVAGCDEAKEEVAELVEY-LREPSR 36


>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
           toxin zeta subunit {Streptococcus pyogenes [TaxId:
           1314]}
          Length = 273

 Score = 40.7 bits (94), Expect = 1e-05
 Identities = 7/85 (8%), Positives = 22/85 (25%), Gaps = 9/85 (10%)

Query: 8   IAAETHGHVGADLASLCSEAALQQIR-------EKMDLIDLEDDQIDAEILA--SLAVTM 58
                  ++  +L +L        IR       +    ++         +    +  V+ 
Sbjct: 176 AHDIVVKNLPTNLETLHKTGLFSDIRLYNREGVKLYSSLETPSISPKETLEKELNRKVSG 235

Query: 59  ENFRYAMGKSSPSALRETIVEVPNI 83
           +  +  + +     +     E P  
Sbjct: 236 KEIQPTLERIEQKMVLNKHQETPEF 260


>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
           domain {Simian virus 40 [TaxId: 10633]}
          Length = 362

 Score = 31.2 bits (70), Expect = 0.026
 Identities = 4/51 (7%), Positives = 12/51 (23%), Gaps = 1/51 (1%)

Query: 8   IAAETHGHVGADLASLCSEAALQQIREKMDLIDLED-DQIDAEILASLAVT 57
           +         A+ A       ++          L    ++   +   + V 
Sbjct: 311 LLMLIWYRPVAEFAQSIQSRIVEWKERLDKEFSLSVYQKMKFNVAMGIGVL 361


>d1fuia1 b.43.2.1 (A:356-591) L-fucose isomerase, C-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 236

 Score = 28.2 bits (63), Expect = 0.26
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 5/35 (14%)

Query: 12  THGHVGADLASLCSEAALQQIREKMDLIDLEDDQI 46
           T GHVGAD  +L S      +R  + + ++E+ ++
Sbjct: 177 TIGHVGADFITLAS-----MLRIPVCMHNVEETKV 206


>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
           aerophilum [TaxId: 13773]}
          Length = 276

 Score = 27.8 bits (60), Expect = 0.29
 Identities = 10/54 (18%), Positives = 15/54 (27%), Gaps = 9/54 (16%)

Query: 8   IAAETHGHVGADLAS--------LCSEAALQQIREKMDLIDLED-DQIDAEILA 52
           IA  T      D           +   +A    +     I  ED  +   E+L 
Sbjct: 222 IADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLF 275


>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
           {Thermus thermophilus [TaxId: 274]}
          Length = 239

 Score = 26.1 bits (56), Expect = 1.3
 Identities = 5/20 (25%), Positives = 13/20 (65%)

Query: 84  TWEDIGGLEGVKRELQELVQ 103
           T ++  G E +K++L+  ++
Sbjct: 7   TLDEYIGQERLKQKLRVYLE 26


>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
           161736]}
          Length = 321

 Score = 25.0 bits (54), Expect = 3.4
 Identities = 5/38 (13%), Positives = 10/38 (26%)

Query: 6   LGIAAETHGHVGADLASLCSEAALQQIREKMDLIDLED 43
           L    E    +   L +   E ++  I         + 
Sbjct: 270 LTRTGEGLQRLTHTLQTSYGEHSVLTIHTSKQSGGKQA 307


>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
           {Thermotoga maritima [TaxId: 2336]}
          Length = 238

 Score = 24.2 bits (51), Expect = 5.9
 Identities = 5/20 (25%), Positives = 12/20 (60%)

Query: 84  TWEDIGGLEGVKRELQELVQ 103
           + ++  G E VK++L   ++
Sbjct: 7   SLDEFIGQENVKKKLSLALE 26


>d1chma1 c.55.2.1 (A:2-156) Creatinase {Pseudomonas putida [TaxId:
          303]}
          Length = 155

 Score = 23.6 bits (50), Expect = 6.5
 Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 9/53 (16%)

Query: 29 LQQIREKMDLIDLEDDQIDAEILASLAVTMENFRYAMGKSSPSALRETIVEVP 81
            ++R  +       + IDA I  S      N  Y       S  R   + V 
Sbjct: 27 QARLRAHL-----AAENIDAAIFTS----YHNINYYSDFLYCSFGRPYALVVT 70


>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
           domain {Aeropyrum pernix [TaxId: 56636]}
          Length = 287

 Score = 23.9 bits (50), Expect = 7.8
 Identities = 4/41 (9%), Positives = 7/41 (17%), Gaps = 5/41 (12%)

Query: 8   IAAETHGHVGA-----DLASLCSEAALQQIREKMDLIDLED 43
           I+       G              A         D +  + 
Sbjct: 239 ISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDL 279


>d1wpna_ c.107.1.1 (A:) Manganese-dependent inorganic
          pyrophosphatase (family II) {Bacillus subtilis [TaxId:
          1423]}
          Length = 187

 Score = 23.6 bits (50), Expect = 8.5
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 13 HGHVGADLASLCSEAALQQIREKMD 37
           GH   D  ++CS  A   ++ K+ 
Sbjct: 6  FGHQNPDTDTICSAIAYADLKNKLG 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.373 

Gapped
Lambda     K      H
   0.267   0.0583    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 456,938
Number of extensions: 18846
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 27
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.6 bits)