BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5702
(235 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 94/183 (51%), Gaps = 23/183 (12%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
G TPLH AAR G+++ V LEK + A G+TPLH AA +G + +A LLL A
Sbjct: 113 GHTPLHIAAREGHVETVLALLEKEA-SQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH 171
Query: 87 PSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLL 130
P+ + G+ PLH A +++V+LL PLH AA++ VE+ R L
Sbjct: 172 PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 231
Query: 131 LSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSIT 190
L YG S PLH AA++G EMV LLLS A+ L + +G TPL +
Sbjct: 232 LQYGGSANAESVQGV------TPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLV 285
Query: 191 SDE 193
+ E
Sbjct: 286 AQE 288
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 104/226 (46%), Gaps = 42/226 (18%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
G TPLH AA+ G + LE+ +H A N G TPLH A H LDI +LLL G
Sbjct: 146 GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN-GLTPLHVAVHHNNLDIVKLLLPRGGS 204
Query: 87 PSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLL 130
P A G PLH AA++ VE+ R L PLH AA++G EMV LL
Sbjct: 205 PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALL 264
Query: 131 LSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSIT 190
LS A+ L + + PLH A++G V + +L+ +G + G+TPL +
Sbjct: 265 LSKQANGNLGNKSGL------TPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVA 318
Query: 191 SDETTRKLLQY---HLADVRGHEAPKWDFAGPASCFDKQMVGYEPL 233
S KL+++ H ADV K +GY PL
Sbjct: 319 SHYGNIKLVKFLLQHQADVNA----------------KTKLGYSPL 348
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 98/207 (47%), Gaps = 44/207 (21%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGA 85
+G TPLH A +D V L + +P N GYTPLH AA +++AR LL YG
Sbjct: 178 NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN-GYTPLHIAAKQNQVEVARSLLQYGG 236
Query: 86 DPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRL 129
+ ++ G+ PLH AA++G EMV LL PLH A++G V + +
Sbjct: 237 SANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADV 296
Query: 130 LLSYGA----------DPL-LASY-----AVYFL-----------SLPSRPLHDAAEKGC 162
L+ +G PL +AS+ V FL L PLH AA++G
Sbjct: 297 LIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGH 356
Query: 163 VEMVRLLLSYGADPLLASYAGHTPLSI 189
++V LLL GA P S G TPL+I
Sbjct: 357 TDIVTLLLKNGASPNEVSSDGTTPLAI 383
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 86/182 (47%), Gaps = 23/182 (12%)
Query: 28 ETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADP 87
+TPLH AAR+G+ + V LE ++ P AG+TPLH AA G ++ LL A
Sbjct: 81 QTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQ 139
Query: 88 SDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLL 131
+ G PLH AA+ G V + LL PLH A +++V+LLL
Sbjct: 140 ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLL 199
Query: 132 SYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITS 191
G P ++ Y PLH AA++ VE+ R LL YG S G TPL + +
Sbjct: 200 PRGGSPHSPAWNGY------TPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAA 253
Query: 192 DE 193
E
Sbjct: 254 QE 255
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 83/199 (41%), Gaps = 24/199 (12%)
Query: 28 ETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADP 87
ETPLH AAR G+ + Y L+ + A K TPLH AA G ++ +LLL A+P
Sbjct: 48 ETPLHMAARAGHTEVAKYLLQNKAKVNA-KAKDDQTPLHCAARIGHTNMVKLLLENNANP 106
Query: 88 SDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFL 147
+ + G PLH AA +G VE V L L A + C+
Sbjct: 107 NLATTAGHTPLHIAAREGHVETVLAL-LEKEASQACMTKKGF------------------ 147
Query: 148 SLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVR 207
PLH AA+ G V + LLL A P A G TPL + +++ L
Sbjct: 148 ----TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG 203
Query: 208 GHEAPKWDFAGPASCFDKQ 226
+P W+ P KQ
Sbjct: 204 SPHSPAWNGYTPLHIAAKQ 222
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 63 TPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL--------- 113
TPLH A+ G L I + LL GA P+ S + PLH AA G E+ + L
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 114 -------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMV 166
PLH AA G MV+LLL A+P LA+ A + PLH AA +G VE V
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGH------TPLHIAAREGHVETV 129
Query: 167 RLLLSYGADPLLASYAGHTPLSITS 191
LL A + G TPL + +
Sbjct: 130 LALLEKEASQACMTKKGFTPLHVAA 154
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
G TPLH A+ G I V + L+ + A K GY+PLH+AA G DI LLL GA
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADVNA-KTKLGYSPLHQAAQQGHTDIVTLLLKNGAS 369
Query: 87 PSDSAIGGIRPLHDAAEKGCVEMVRLLPL 115
P++ + G PL A G + + +L +
Sbjct: 370 PNEVSSDGTTPLAIAKRLGYISVTDVLKV 398
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 80/152 (52%), Gaps = 22/152 (14%)
Query: 65 LHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------- 113
L EAA +G D + LL GADP+ S G PLH AAE G E+V+LL
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 114 -----PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRL 168
PLH AAE G E+V+LLLS GADP S PLH AAE G E+V+L
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD------SDGRTPLHYAAENGHKEIVKL 121
Query: 169 LLSYGADPLLASYAGHTPLSITSDETTRKLLQ 200
LLS GADP + G TPL + + ++++
Sbjct: 122 LLSKGADPNTSDSDGRTPLDLAREHGNEEIVK 153
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 79/160 (49%), Gaps = 23/160 (14%)
Query: 31 LHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDS 90
L AA G D V LE + P D+ G TPLH AA +G +I +LLL GADP+
Sbjct: 8 LIEAAENGNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK 66
Query: 91 AIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYG 134
G PLH AAE G E+V+LL PLH AAE G E+V+LLLS G
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKG 126
Query: 135 ADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGA 174
ADP + S PL A E G E+V+LL G
Sbjct: 127 ADPNTSD------SDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 115 LHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGA 174
L +AAE G + V+ LL GADP + S PLH AAE G E+V+LLLS GA
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASD------SDGRTPLHYAAENGHKEIVKLLLSKGA 61
Query: 175 DPLLASYAGHTPLSITSDETTRKLLQYHLA 204
DP G TPL ++ +++++ L+
Sbjct: 62 DPNAKDSDGRTPLHYAAENGHKEIVKLLLS 91
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 80/157 (50%), Gaps = 25/157 (15%)
Query: 65 LHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------- 113
L EAA +G D + LL GAD + S G PLH AAE G E+V+LL
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 114 -----PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRL 168
PLH AAE G E+V+LLLS GADP S PLH AAE G E+V+L
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD------SDGKTPLHLAAENGHKEVVKL 121
Query: 169 LLSYGADPLLASYAGHTPLSIT---SDETTRKLLQYH 202
LLS GADP + G TPL + +E KLL+
Sbjct: 122 LLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 84/170 (49%), Gaps = 30/170 (17%)
Query: 8 DTVEDV---GAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTP 64
D V+D+ GA+V + + G+TPLH AA G+ + V L + + P KD+ G TP
Sbjct: 18 DRVKDLLENGADVNA---SDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTP 73
Query: 65 LHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCV 124
LH AA +G ++ +LLL GADP+ G PLH AAE G
Sbjct: 74 LHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLH-----------------LAAENGHK 116
Query: 125 EMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGA 174
E+V+LLLS GADP + S PL A E G E+V+LL G
Sbjct: 117 EVVKLLLSQGADPNTSD------SDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 115 LHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGA 174
L +AAE G + V+ LL GAD + S PLH AAE G E+V+LLLS GA
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASD------SDGKTPLHLAAENGHKEVVKLLLSQGA 61
Query: 175 DPLLASYAGHTPLSITSDETTRKLLQYHLA 204
DP G TPL + ++ +++++ L+
Sbjct: 62 DPNAKDSDGKTPLHLAAENGHKEVVKLLLS 91
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 78/154 (50%), Gaps = 27/154 (17%)
Query: 67 EAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------------- 113
EAA +G D + L+ GAD + S G PLH AAE G E+V+LL
Sbjct: 10 EAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD 69
Query: 114 ---PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR-PLHDAAEKGCVEMVRLL 169
PLH AAE G E+V+LL+S GAD V R PLH AAE G E+V+LL
Sbjct: 70 GRTPLHHAAENGHKEVVKLLISKGAD-------VNAKDSDGRTPLHHAAENGHKEVVKLL 122
Query: 170 LSYGADPLLASYAGHTPLSIT---SDETTRKLLQ 200
+S GAD + G TPL + +E KLL+
Sbjct: 123 ISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLE 156
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 63/125 (50%), Gaps = 17/125 (13%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
G TPLH AA G+ + V + K + A KD+ G TPLH AA +G ++ +LL+ GAD
Sbjct: 37 GRTPLHHAAENGHKEVVKLLISKGADVNA-KDSDGRTPLHHAAENGHKEVVKLLISKGAD 95
Query: 87 PSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLL 130
+ G PLH AAE G E+V+LL PL A E G E+V+LL
Sbjct: 96 VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Query: 131 LSYGA 135
G
Sbjct: 156 EKQGG 160
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 70/126 (55%), Gaps = 17/126 (13%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGA 85
+G TPLH AAR G+++ V LE + A KD G TPLH AA +G L++ +LLL GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 86 DPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRL 129
D + G PLH AA G +E+V+LL PLH AA G +E+V+L
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 130 LLSYGA 135
LL GA
Sbjct: 120 LLEAGA 125
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 63/132 (47%), Gaps = 25/132 (18%)
Query: 61 GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAE 120
G TPLH AA +G L++ +LLL GAD + G PLH AA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG-----------------RTPLHLAAR 44
Query: 121 KGCVEMVRLLLSYGADPLLASYAVYFLSLPSR-PLHDAAEKGCVEMVRLLLSYGADPLLA 179
G +E+V+LLL GAD V R PLH AA G +E+V+LLL GAD
Sbjct: 45 NGHLEVVKLLLEAGAD-------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 97
Query: 180 SYAGHTPLSITS 191
G TPL + +
Sbjct: 98 DKNGRTPLHLAA 109
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 81/171 (47%), Gaps = 24/171 (14%)
Query: 30 PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
L AAR G D V + + A DN GYTPLH AAS+G L+I +LL GAD +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAT-DNDGYTPLHLAASNGHLEIVEVLLKNGADVNA 75
Query: 90 SAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSL 149
S + GI PLH AA G +E+V +L L +GAD + +
Sbjct: 76 SDLTGITPLHLAAATGHLEIVEVL-----------------LKHGAD------VNAYDND 112
Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQ 200
PLH AA+ G +E+V +LL +GAD G T I+ D L +
Sbjct: 113 GHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 152 RPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITS 191
+ L +AA G + VR+L++ GAD G+TPL + +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAA 55
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 79/169 (46%), Gaps = 24/169 (14%)
Query: 30 PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
L AAR G D V + + A DN G TPLH AA G L+I +LL +GAD
Sbjct: 17 KLLEAARAGQDDEVRILIANGADVNAV-DNTGLTPLHLAAVSGHLEIVEVLLKHGADV-- 73
Query: 90 SAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSL 149
DAA+ + PLH AA G +E+V +LL YGAD F
Sbjct: 74 ----------DAAD-----VYGFTPLHLAAMTGHLEIVEVLLKYGAD------VNAFDMT 112
Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKL 198
S PLH AA++G +E+V +LL YGAD G T I+ D L
Sbjct: 113 GSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 14/58 (24%)
Query: 152 RPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGH 209
+ L +AA G + VR+L++ GAD G TPL HLA V GH
Sbjct: 16 KKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPL--------------HLAAVSGH 59
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 71/151 (47%), Gaps = 22/151 (14%)
Query: 64 PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---------- 113
L EAA G D R+L+ GAD + + GI PLH G +E++ +L
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNAS 76
Query: 114 ------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVR 167
PLH AA +G +E+V +LL YGAD Y Y PLH AAE G +E+V
Sbjct: 77 DKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGY------TPLHLAAEDGHLEIVE 130
Query: 168 LLLSYGADPLLASYAGHTPLSITSDETTRKL 198
+LL YGAD G T I+ D L
Sbjct: 131 VLLKYGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 14 GAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGW 73
GA+V + N G TPLH G+++ + L K++ D +G+TPLH AA G
Sbjct: 37 GADVNA---NDWFGITPLHLVVNNGHLEIIEVLL-KYAADVNASDKSGWTPLHLAAYRGH 92
Query: 74 LDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
L+I +LL YGAD + G PLH AAE G +E+V +L
Sbjct: 93 LEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVL 132
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
G TPLH AA G+++ V L K+ D GYTPLH AA G L+I +LL YGAD
Sbjct: 80 GWTPLHLAAYRGHLEIVEVLL-KYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD 138
Query: 87 PSDSAIGGIRPLHDAAEKGCVEMVRLLP 114
+ G + + G ++ +L
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 152 RPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADVR 207
+ L +AA G + VR+L++ GAD + G TPL + + E LL+Y ADV
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKY-AADVN 74
Query: 208 GHEAPKW 214
+ W
Sbjct: 75 ASDKSGW 81
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 81/153 (52%), Gaps = 24/153 (15%)
Query: 65 LHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------- 113
L EAA +G D + L+ GAD + S G PLH AA++G E+V+LL
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 114 -----PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR-PLHDAAEKGCVEMVR 167
PLH AA++G E+V+LL+S GAD V R PLH AA++G E+V+
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKGAD-------VNAKDSDGRTPLHYAAKEGHKEIVK 120
Query: 168 LLLSYGADPLLASYAGHTPLSITSDETTRKLLQ 200
LL+S GAD + G TPL + + ++++
Sbjct: 121 LLISKGADVNTSDSDGRTPLDLAREHGNEEIVK 153
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 64/125 (51%), Gaps = 17/125 (13%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
G TPLH AA+ G+ + V + K + A KD+ G TPLH AA G +I +LL+ GAD
Sbjct: 37 GRTPLHYAAKEGHKEIVKLLISKGADVNA-KDSDGRTPLHYAAKEGHKEIVKLLISKGAD 95
Query: 87 PSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLL 130
+ G PLH AA++G E+V+LL PL A E G E+V+LL
Sbjct: 96 VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Query: 131 LSYGA 135
G
Sbjct: 156 EKQGG 160
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Query: 24 KHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY 83
H GET LH A+ G I +V Y L+ S P KD+AG+TPLHEA +HG L + LLL +
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGS-DPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 84 GADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRL 129
A + + PLHDAA+ G V++V+LL L A + V + L
Sbjct: 66 KALVNTTGYQNDSPLHDAAKNGHVDIVKLL-LSYGASRNAVNIFGL 110
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 63/139 (45%), Gaps = 23/139 (16%)
Query: 61 GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAE 120
G T LH A+ G + LL G+DP+ G PLH+A G +++V LL H A
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 121 KGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLAS 180
Y D PLHDAA+ G V++V+LLLSYGA +
Sbjct: 70 NTT--------GYQND---------------SPLHDAAKNGHVDIVKLLLSYGASRNAVN 106
Query: 181 YAGHTPLSITSDETTRKLL 199
G P+ T DE+ + LL
Sbjct: 107 IFGLRPVDYTDDESMKSLL 125
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 22 INKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGY---TPLHEAASHGWLDIAR 78
+ H G TPLH A G++ V L+ A + GY +PLH+AA +G +DI +
Sbjct: 38 VKDHAGWTPLHEACNHGHLKVVELLLQH----KALVNTTGYQNDSPLHDAAKNGHVDIVK 93
Query: 79 LLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLP 114
LLL YGA + I G+RP+ D + ++ + LLP
Sbjct: 94 LLLSYGASRNAVNIFGLRPV-DYTDDESMKSLLLLP 128
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 74/153 (48%), Gaps = 22/153 (14%)
Query: 64 PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---------- 113
L EAA G D R+L+ GAD + G PLH AA G +E+V +L
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL 76
Query: 114 ------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVR 167
PLH AA++G +E+V +LL YGAD ++ S PLH AA+ G +E+V
Sbjct: 77 DFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADD------TIGSTPLHLAADTGHLEIVE 130
Query: 168 LLLSYGADPLLASYAGHTPLSITSDETTRKLLQ 200
+LL YGAD G T I+ D L +
Sbjct: 131 VLLKYGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 62/112 (55%), Gaps = 20/112 (17%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGA 85
+G+TPLH AAR+G+++ V L+ + A D +G TPLH AA G L+I +LL YGA
Sbjct: 46 YGDTPLHLAARVGHLEIVEVLLKNGADVNAL-DFSGSTPLHLAAKRGHLEIVEVLLKYGA 104
Query: 86 D-PSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGAD 136
D +D IG PLH AA+ G +E+V +LL YGAD
Sbjct: 105 DVNADDTIGST------------------PLHLAADTGHLEIVEVLLKYGAD 138
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 152 RPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEA 211
+ L +AA G + VR+L++ GAD G TPL + + ++++ L + G +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKN--GADV 73
Query: 212 PKWDFAGP 219
DF+G
Sbjct: 74 NALDFSGS 81
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 96/230 (41%), Gaps = 30/230 (13%)
Query: 6 LGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPL 65
G + D+ V+ + + L AAR G + + L + D TPL
Sbjct: 3 FGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPL 62
Query: 66 HEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVE 125
H AA + + I +LLL +GAD GG+ PLH+A G E+ LL H A CV
Sbjct: 63 HLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGA----CVN 118
Query: 126 MVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHT 185
+ L PLH+AA K VE+ LLLS+GADP L + G +
Sbjct: 119 AMDLW-------------------QFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKS 159
Query: 186 PLSITSDETTRKLLQYHLADVRGHE----APKWDFAGPASCFDKQMVGYE 231
+ + R+ L Y + +GH A + D A +++ ++
Sbjct: 160 AVDMAPTPELRERLTY---EFKGHSLLQAAREADLAKVKKTLALEIINFK 206
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 29 TPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPS 88
TPLH AA + D V L K D+ G T LH AA G L RLLL YG+DPS
Sbjct: 249 TPLHVAAERAHND-VMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS 307
Query: 89 DSAIGGI 95
++ G
Sbjct: 308 IISLQGF 314
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 24/125 (19%)
Query: 75 DIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYG 134
+A LLL GA+ ++ + PLH AAE+ +++ +L H A
Sbjct: 228 QVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA------------ 275
Query: 135 ADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDET 194
SL LH AA G ++ RLLLSYG+DP + S G T + +E
Sbjct: 276 -----------LDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQM-GNEA 323
Query: 195 TRKLL 199
+++L
Sbjct: 324 VQQIL 328
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 73/153 (47%), Gaps = 22/153 (14%)
Query: 64 PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---------- 113
L EAA G D R+L+ GAD + + G PLH AA+ G +E+V +L
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAW 76
Query: 114 ------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVR 167
PLH AA+ G +E+V +LL +GAD Y + PLH AA G +E+V
Sbjct: 77 DNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGF------TPLHLAAYDGHLEIVE 130
Query: 168 LLLSYGADPLLASYAGHTPLSITSDETTRKLLQ 200
+LL YGAD G T I+ D L +
Sbjct: 131 VLLKYGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 152 RPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADVR 207
+ L +AA G + VR+L++ GAD + GHTPL + + E LL+Y
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKY------ 69
Query: 208 GHEAPKWDFAG 218
G + WD G
Sbjct: 70 GADVNAWDNYG 80
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 79/170 (46%), Gaps = 26/170 (15%)
Query: 30 PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD-PS 88
L AAR G D V + + A D+ G+TPLH AA G L+I +LL GAD +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAS-DHVGWTPLHLAAYFGHLEIVEVLLKNGADVNA 75
Query: 89 DSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLS 148
D ++G + PLH AA++G +E+V +LL GAD + +
Sbjct: 76 DDSLG------------------VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGF--- 114
Query: 149 LPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKL 198
PLH AA G +E+V +LL +GAD G T I+ D L
Sbjct: 115 ---TPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 14 GAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGP--APKDNAGYTPLHEAASH 71
GA+V + N H+G TPLH AA +G+++ V L+ HG +D G T + +
Sbjct: 103 GADVNA---NDHNGFTPLHLAANIGHLEIVEVLLK---HGADVNAQDKFGKTAFDISIDN 156
Query: 72 GWLDIARLL 80
G D+A +L
Sbjct: 157 GNEDLAEIL 165
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 152 RPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITS 191
+ L +AA G + VR+L++ GAD + + G TPL + +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAA 55
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGA 85
+G TPLH AAR G+++ V LE + A KD G TPLH AA +G L++ +LLL GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 86 DPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
D + G PLH AA G +E+V+LL
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 56/115 (48%), Gaps = 25/115 (21%)
Query: 61 GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAE 120
G TPLH AA +G L++ +LLL GAD + G PLH AA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG-----------------RTPLHLAAR 44
Query: 121 KGCVEMVRLLLSYGADPLLASYAVYFLSLPSR-PLHDAAEKGCVEMVRLLLSYGA 174
G +E+V+LLL GAD V R PLH AA G +E+V+LLL GA
Sbjct: 45 NGHLEVVKLLLEAGAD-------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 12 DVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASH 71
+ GA+V + N G TPLH AAR G+++ V LE + A KD G TPLH AA +
Sbjct: 23 EAGADVNAKDKN---GRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARN 78
Query: 72 GWLDIARLLLMYGA 85
G L++ +LLL GA
Sbjct: 79 GHLEVVKLLLEAGA 92
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR-PLHDAAEKGCVEMVRLLLSY 172
PLH AA G +E+V+LLL GAD V R PLH AA G +E+V+LLL
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGAD-------VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 173 GADPLLASYAGHTPLSITS 191
GAD G TPL + +
Sbjct: 58 GADVNAKDKNGRTPLHLAA 76
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 74/170 (43%), Gaps = 24/170 (14%)
Query: 31 LHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDS 90
L AAR G D V + + A KD GYTPLH AA G L+I +LL GAD +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNA-KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 91 AIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLP 150
G PLH AA +G +E+V +LL GAD Y
Sbjct: 65 DKDGYTPLHLAAREGHLEIVE-----------------VLLKAGADVNAKDKDGY----- 102
Query: 151 SRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQ 200
PLH AA +G +E+V +LL GAD G TP + D + +
Sbjct: 103 -TPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAE 151
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
G TPLH AAR G+++ V L K KD GYTPLH AA G L+I +LL GAD
Sbjct: 35 GYTPLHLAAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 93
Query: 87 PSDSAIGGIRPLHDAAEKGCVEMVRLL 113
+ G PLH AA +G +E+V +L
Sbjct: 94 VNAKDKDGYTPLHLAAREGHLEIVEVL 120
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
G TPLH AAR G+++ V L K KD GYTPLH AA G L+I +LL GAD
Sbjct: 68 GYTPLHLAAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 87 PSDSAIGGIRPLHDAAEKGCVEMVRLL 113
+ G P A + G ++ +L
Sbjct: 127 VNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 115 LHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGA 174
L +AA G + VR+L++ GAD Y PLH AA +G +E+V +LL GA
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGY------TPLHLAAREGHLEIVEVLLKAGA 59
Query: 175 DPLLASYAGHTPLSITSDETTRKLLQYHL---ADVRGHEAPKW 214
D G+TPL + + E ++++ L ADV + +
Sbjct: 60 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 102
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 15/83 (18%)
Query: 152 RPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGH-E 210
+ L +AA G + VR+L++ GAD G+TPL HLA GH E
Sbjct: 4 KKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPL--------------HLAAREGHLE 49
Query: 211 APKWDFAGPASCFDKQMVGYEPL 233
+ A K GY PL
Sbjct: 50 IVEVLLKAGADVNAKDKDGYTPL 72
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 75/152 (49%), Gaps = 22/152 (14%)
Query: 65 LHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------- 113
L EAA G D R+L+ GAD + G PLH AA G E+V +L
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 114 -----PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRL 168
PLH AA+ G +E+V +LL YGAD + + Y L+ PLH AA++G +E+V +
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLKYGAD--VNAQDAYGLT----PLHLAADRGHLEIVEV 131
Query: 169 LLSYGADPLLASYAGHTPLSITSDETTRKLLQ 200
LL +GAD G T I+ D L +
Sbjct: 132 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 58/99 (58%), Gaps = 3/99 (3%)
Query: 22 INKH--HGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARL 79
+N H G TPLH AA +G+ + V L K +D G+TPLH AA +G L+I +
Sbjct: 40 VNAHDDQGSTPLHLAAWIGHPEIVEVLL-KHGADVNARDTDGWTPLHLAADNGHLEIVEV 98
Query: 80 LLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDA 118
LL YGAD + G+ PLH AA++G +E+V +L H A
Sbjct: 99 LLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGA 137
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
G TPLH AA G+++ V L K+ +D G TPLH AA G L+I +LL +GAD
Sbjct: 80 GWTPLHLAADNGHLEIVEVLL-KYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD 138
Query: 87 PS 88
+
Sbjct: 139 VN 140
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 152 RPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITS----DETTRKLLQYHLADVR 207
+ L +AA G + VR+L++ GAD G TPL + + E LL+ H ADV
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLK-HGADVN 74
Query: 208 GHEAPKW 214
+ W
Sbjct: 75 ARDTDGW 81
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 81/172 (47%), Gaps = 24/172 (13%)
Query: 30 PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
L AAR G D V + + A +D G+TPLH AA G L+I +LL GAD +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNA-RDFTGWTPLHLAAHFGHLEIVEVLLKNGADVN- 74
Query: 90 SAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSL 149
+ + + PLH AA +G +E+V +LL GAD + AS + F
Sbjct: 75 ----------------AKDSLGVTPLHLAARRGHLEIVEVLLKNGAD-VNASDSHGF--- 114
Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQY 201
PLH AA++G +E+V +LL GAD G T I+ D L +
Sbjct: 115 --TPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
G TPLH AA G+++ V L+ + A KD+ G TPLH AA G L+I +LL GAD
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKNGADVNA-KDSLGVTPLHLAARRGHLEIVEVLLKNGAD 105
Query: 87 PSDSAIGGIRPLHDAAEKGCVEMVRLL 113
+ S G PLH AA++G +E+V +L
Sbjct: 106 VNASDSHGFTPLHLAAKRGHLEIVEVL 132
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 152 RPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITS 191
+ L +AA G + VR+L++ GAD + G TPL + +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAA 55
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 74/171 (43%), Gaps = 24/171 (14%)
Query: 30 PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
L AAR G D V + + A KD GYTPLH AA G L+I +LL GAD +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNA-KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 75
Query: 90 SAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSL 149
G PLH AA +G +E+V +LL GAD Y
Sbjct: 76 KDKDGYTPLHLAAREGHLEIVE-----------------VLLKAGADVNAKDKDGYT--- 115
Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQ 200
PLH AA +G +E+V +LL GAD G T I+ D L +
Sbjct: 116 ---PLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
L +AA G + VR+L++ GAD Y PLH AA +G +E+V +LL G
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAKDKDGYT------PLHLAAREGHLEIVEVLLKAG 70
Query: 174 ADPLLASYAGHTPLSITSDETTRKLLQYHL---ADVRGHEAPKW 214
AD G+TPL + + E ++++ L ADV + +
Sbjct: 71 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 114
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 15/83 (18%)
Query: 152 RPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGH-E 210
+ L +AA G + VR+L++ GAD G+TPL HLA GH E
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPL--------------HLAAREGHLE 61
Query: 211 APKWDFAGPASCFDKQMVGYEPL 233
+ A K GY PL
Sbjct: 62 IVEVLLKAGADVNAKDKDGYTPL 84
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 83/177 (46%), Gaps = 23/177 (12%)
Query: 29 TPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPS 88
T LH A G+ + V + L+ KD+AG++PLH AAS G +I + LL GA +
Sbjct: 43 TALHWACSAGHTEIVEFLLQ-LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN 101
Query: 89 DSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLS 132
G PLH AA K E+ +L +H AA KG ++M+ +LL
Sbjct: 102 AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLY 161
Query: 133 YGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSI 189
Y A + + + PLH A ++ VE +LL+S GA + + TPL +
Sbjct: 162 YKASTNIQD------TEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV 212
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 67/152 (44%), Gaps = 22/152 (14%)
Query: 58 DNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---- 113
D T LH A S G +I LL G +D G PLH AA G E+V+ L
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 97
Query: 114 ------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKG 161
PLH AA K E+ +LL GA+P + + +H AA KG
Sbjct: 98 AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH------YEATAMHRAAAKG 151
Query: 162 CVEMVRLLLSYGADPLLASYAGHTPLSITSDE 193
++M+ +LL Y A + G+TPL + DE
Sbjct: 152 NLKMIHILLYYKASTNIQDTEGNTPLHLACDE 183
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 83/177 (46%), Gaps = 23/177 (12%)
Query: 29 TPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPS 88
T LH A G+ + V + L+ KD+AG++PLH AAS G +I + LL GA +
Sbjct: 42 TALHWACSAGHTEIVEFLLQ-LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN 100
Query: 89 DSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLS 132
G PLH AA K E+ +L +H AA KG ++M+ +LL
Sbjct: 101 AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLY 160
Query: 133 YGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSI 189
Y A + + + PLH A ++ VE +LL+S GA + + TPL +
Sbjct: 161 YKASTNIQD------TEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV 211
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 67/152 (44%), Gaps = 22/152 (14%)
Query: 58 DNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---- 113
D T LH A S G +I LL G +D G PLH AA G E+V+ L
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 96
Query: 114 ------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKG 161
PLH AA K E+ +LL GA+P + + +H AA KG
Sbjct: 97 AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH------YEATAMHRAAAKG 150
Query: 162 CVEMVRLLLSYGADPLLASYAGHTPLSITSDE 193
++M+ +LL Y A + G+TPL + DE
Sbjct: 151 NLKMIHILLYYKASTNIQDTEGNTPLHLACDE 182
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 83/171 (48%), Gaps = 24/171 (14%)
Query: 30 PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
L AAR G D V + + A +D++G TPLH AA G L+I +LL +GAD +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNA-EDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN- 74
Query: 90 SAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSL 149
AA+K + PLH AA G +E+V +LL GAD + + Y +
Sbjct: 75 -----------AADK-----MGDTPLHLAALYGHLEIVEVLLKNGAD--VNATDTYGFT- 115
Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQ 200
PLH AA+ G +E+V +LL YGAD G T I+ D L +
Sbjct: 116 ---PLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 57/104 (54%), Gaps = 12/104 (11%)
Query: 12 DVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGP--APKDNAGYTPLHEAA 69
DV AE S G+TPLH AA G+++ V L+ HG D G TPLH AA
Sbjct: 39 DVNAEDDS-------GKTPLHLAAIKGHLEIVEVLLK---HGADVNAADKMGDTPLHLAA 88
Query: 70 SHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
+G L+I +LL GAD + + G PLH AA+ G +E+V +L
Sbjct: 89 LYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVL 132
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 14/58 (24%)
Query: 152 RPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGH 209
+ L +AA G + VR+L++ GAD +G TPL HLA ++GH
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPL--------------HLAAIKGH 59
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 79/165 (47%), Gaps = 24/165 (14%)
Query: 29 TPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPS 88
T LH A G+ + V + L+ KD+AG++PLH AAS G +I + LL+ GA
Sbjct: 42 TALHWACSAGHTEIVEFLLQ-LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH-- 98
Query: 89 DSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLS 148
++ + GC PLH AA K E+ +LL GA+P +
Sbjct: 99 ---------VNAVNQNGCT------PLHYAASKNRHEIAVMLLEGGANPDAKDH------ 137
Query: 149 LPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDE 193
+ +H AA KG ++MV +LL Y A + G+TPL + DE
Sbjct: 138 YDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE 182
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 79/165 (47%), Gaps = 24/165 (14%)
Query: 29 TPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPS 88
T LH A G+ + V + L+ KD+AG++PLH AAS G +I + LL+ GA
Sbjct: 42 TALHWACSAGHTEIVEFLLQ-LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAH-- 98
Query: 89 DSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLS 148
++ + GC PLH AA K E+ +LL GA+P +
Sbjct: 99 ---------VNAVNQNGCT------PLHYAASKNRHEIAVMLLEGGANPDAKDH------ 137
Query: 149 LPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDE 193
+ +H AA KG ++MV +LL Y A + G+TPL + DE
Sbjct: 138 YDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE 182
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 62/133 (46%), Gaps = 23/133 (17%)
Query: 63 TPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKG 122
TPLH AA + + + LL +GAD GG+ PLH+A G E+ LL H G
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH-----G 98
Query: 123 CVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYA 182
V V L + PLH+AA KG E+ +LLL +GADP +
Sbjct: 99 AVVNVADLWKF------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRD 140
Query: 183 GHTPLSITSDETT 195
G+TPL + D T
Sbjct: 141 GNTPLDLVKDGDT 153
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 29 TPLHRAARLGYIDAVAYCLEKFSHGPA--PKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
TPLH AA + V Y L+ HG KD G PLH A S+G ++A LL+ +GA
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQ---HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 100
Query: 87 PSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDA 118
+ + + PLH+AA KG E+ +LL H A
Sbjct: 101 VNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 132
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 62/133 (46%), Gaps = 23/133 (17%)
Query: 63 TPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKG 122
TPLH AA + + + LL +GAD GG+ PLH+A G E+ LL H G
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH-----G 100
Query: 123 CVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYA 182
V V L + PLH+AA KG E+ +LLL +GADP +
Sbjct: 101 AVVNVADLWKF------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRD 142
Query: 183 GHTPLSITSDETT 195
G+TPL + D T
Sbjct: 143 GNTPLDLVKDGDT 155
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 29 TPLHRAARLGYIDAVAYCLEKFSHGPA--PKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
TPLH AA + V Y L+ HG KD G PLH A S+G ++A LL+ +GA
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQ---HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 102
Query: 87 PSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDA 118
+ + + PLH+AA KG E+ +LL H A
Sbjct: 103 VNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 134
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 62/133 (46%), Gaps = 23/133 (17%)
Query: 63 TPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKG 122
TPLH AA + + + LL +GAD GG+ PLH+A G E+ LL H G
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH-----G 102
Query: 123 CVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYA 182
V V L + PLH+AA KG E+ +LLL +GADP +
Sbjct: 103 AVVNVADLWKF------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRD 144
Query: 183 GHTPLSITSDETT 195
G+TPL + D T
Sbjct: 145 GNTPLDLVKDGDT 157
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 29 TPLHRAARLGYIDAVAYCLEKFSHGPA--PKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
TPLH AA + V Y L+ HG KD G PLH A S+G ++A LL+ +GA
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQ---HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 104
Query: 87 PSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDA 118
+ + + PLH+AA KG E+ +LL H A
Sbjct: 105 VNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 136
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 77/169 (45%), Gaps = 24/169 (14%)
Query: 30 PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
L AA G D V + + A DN G TPLH AA++G L+I +LL GAD +
Sbjct: 9 KLLEAAAAGQDDEVRILMANGADVNATDDN-GLTPLHLAAANGQLEIVEVLLKNGADVNA 67
Query: 90 SAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSL 149
S GI PLH AA G +E+V +L L +GAD A +
Sbjct: 68 SDSAGITPLHLAAYDGHLEIVEVL-----------------LKHGADVNAYDRAGW---- 106
Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKL 198
PLH AA G +E+V +LL +GAD G T I+ ++ L
Sbjct: 107 --TPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDL 153
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPK--DNAGYTPLHEAASHGWLDIARLLLMYG 84
G TPLH AA G+++ V L+ HG D AG+TPLH AA G L+I +LL +G
Sbjct: 72 GITPLHLAAYDGHLEIVEVLLK---HGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHG 128
Query: 85 ADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
AD + G+ + +G ++ +L
Sbjct: 129 ADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
L +AA G + VR+L++ GAD A L PLH AA G +E+V +LL G
Sbjct: 9 KLLEAAAAGQDDEVRILMANGADV----NATDDNGLT--PLHLAAANGQLEIVEVLLKNG 62
Query: 174 ADPLLASYAGHTPLSITSDETTRKLLQY---HLADVRGHEAPKW 214
AD + AG TPL + + + ++++ H ADV ++ W
Sbjct: 63 ADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGW 106
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 72/164 (43%), Gaps = 24/164 (14%)
Query: 30 PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
L AAR G D V + + A KD GYTPLH AA G L+I +LL GAD +
Sbjct: 5 KLLEAARAGQDDEVRILMANGADVNA-KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 63
Query: 90 SAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSL 149
G PLH AA +G +E+V +LL GAD Y
Sbjct: 64 KDKDG-----------------YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYT--- 103
Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDE 193
PLH AA +G +E+V +LL GAD G TP + E
Sbjct: 104 ---PLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIRE 144
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
G TPLH AAR G+++ V L K KD GYTPLH AA G L+I +LL GAD
Sbjct: 35 GYTPLHLAAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 93
Query: 87 PSDSAIGGIRPLHDAAEKGCVEMVRLL 113
+ G PLH AA +G +E+V +L
Sbjct: 94 VNAKDKDGYTPLHLAAREGHLEIVEVL 120
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
G TPLH AAR G+++ V L K KD GYTPLH AA G L+I +LL GAD
Sbjct: 68 GYTPLHLAAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 87 PSDSAIGGIRPLHDAAEKGCVEMVRLL 113
+ G P A +G ++ +L
Sbjct: 127 VNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 152 RPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDE 193
+ L +AA G + VR+L++ GAD G+TPL + + E
Sbjct: 4 KKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAARE 45
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 80/169 (47%), Gaps = 24/169 (14%)
Query: 30 PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
L AAR G D V + + A D +G TPLH AA++G L+I +LL +GAD +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAT-DASGLTPLHLAATYGHLEIVEVLLKHGADVN- 74
Query: 90 SAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSL 149
++++ PLH AA G +E+V +LL +GAD AV +
Sbjct: 75 ----------------AIDIMGSTPLHLAALIGHLEIVEVLLKHGADV----NAVD--TW 112
Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKL 198
PLH AA G +E+V +LL +GAD G T I+ D L
Sbjct: 113 GDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
Query: 14 GAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGW 73
GA+ ++ H+G TPLH AA +G+++ V L + A N G TPLH AAS G
Sbjct: 25 GADANAY---DHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN-GTTPLHLAASLGH 80
Query: 74 LDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDA 118
L+I +LL YGAD + GI PL+ AA G +E+V +L H A
Sbjct: 81 LEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGA 125
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 78/174 (44%), Gaps = 27/174 (15%)
Query: 30 PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
L AAR G D V + + A D+ G TPLH AA+ G L+I +LL GAD +
Sbjct: 5 KLLEAARAGQDDEVRILMANGADANA-YDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN- 62
Query: 90 SAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSL 149
V+ PLH AA G +E+V +LL YGAD +
Sbjct: 63 ----------------AVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKD------AT 100
Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD---ETTRKLLQ 200
PL+ AA G +E+V +LL +GAD G T I+ D E ++LQ
Sbjct: 101 GITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEILQ 154
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 79/169 (46%), Gaps = 24/169 (14%)
Query: 30 PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
L AAR G D V + + A D +G TPLH AA++G L+I +LL +GAD +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAT-DASGLTPLHLAATYGHLEIVEVLLKHGADVN- 74
Query: 90 SAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSL 149
+++ PLH AA G +E+V +LL +GAD AV +
Sbjct: 75 ----------------AIDIXGSTPLHLAALIGHLEIVEVLLKHGADV----NAVD--TW 112
Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKL 198
PLH AA G +E+V +LL +GAD G T I+ D L
Sbjct: 113 GDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 77/171 (45%), Gaps = 24/171 (14%)
Query: 30 PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
L AAR G D V + + A DN G TPLH AA G L+I +LL +GAD
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAA-DNTGTTPLHLAAYSGHLEIVEVLLKHGADVDA 75
Query: 90 SAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSL 149
S + G PLH AA G +E+V +L L + A+ ++ S
Sbjct: 76 SDVFGYTPLHLAAYWGHLEIVEVL-LKNGADVNAMD----------------------SD 112
Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQ 200
PLH AA+ G +E+V +LL +GAD G T I+ D L +
Sbjct: 113 GMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 152 RPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITS 191
R L +AA G + VR+L++ GAD A G TPL + +
Sbjct: 16 RKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAA 55
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 77/165 (46%), Gaps = 23/165 (13%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
G T LH AA+ G+ + V Y L +D+ G+TP+ A + +D+ +LLL G+D
Sbjct: 77 GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136
Query: 87 PSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYF 146
+ + D E C LH AA GCV++ +LL+ D L + ++
Sbjct: 137 IN---------IRDNEENIC--------LHWAAFSGCVDIAEILLAAKCD--LHAVNIHG 177
Query: 147 LSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITS 191
S PLH AA + + V L LS +D L + G TPL S
Sbjct: 178 DS----PLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCAS 218
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 86/185 (46%), Gaps = 28/185 (15%)
Query: 29 TPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGA--D 86
+PLH AA G++D + + L + TPL EAA + L+ + L+ GA D
Sbjct: 13 SPLHAAAEAGHVD-ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 87 PSDSAIGGIRPLHDAAEKGCVEMVRLL-----------------PLHDAAEKGCVEMVRL 129
P D+ G LH AA+KG E+V+ L P+ A E V++V+L
Sbjct: 72 PKDAE--GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL 129
Query: 130 LLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSI 189
LLS G+D + + + LH AA GCV++ +LL+ D + G +PL I
Sbjct: 130 LLSKGSDINIRD------NEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHI 183
Query: 190 TSDET 194
+ E
Sbjct: 184 AAREN 188
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAA 69
HG++PLH AAR D V L + S K+ G TPL A+
Sbjct: 176 HGDSPLHIAARENRYDCVVLFLSRDS-DVTLKNKEGETPLQCAS 218
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 153 PLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQY 201
PLH AAE G V++ +L+ GA+ S TPL ++ + ++Y
Sbjct: 14 PLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 70/153 (45%), Gaps = 22/153 (14%)
Query: 64 PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---------- 113
L EAA G D R+L+ GAD + + + G PLH AA G +E+V +L
Sbjct: 17 KLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY 76
Query: 114 ------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVR 167
PLH AA G +E+V +LL GAD PLH AA +G +E+V
Sbjct: 77 DTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKD------DNGITPLHLAANRGHLEIVE 130
Query: 168 LLLSYGADPLLASYAGHTPLSITSDETTRKLLQ 200
+LL YGAD G T I+ + L +
Sbjct: 131 VLLKYGADVNAQDKFGKTAFDISINNGNEDLAE 163
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 61/123 (49%), Gaps = 17/123 (13%)
Query: 30 PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
L AAR G D V + + A D G+TPLH AA G L+I +LL GAD +
Sbjct: 17 KLLEAARAGRDDEVRILMANGADVNAA-DVVGWTPLHLAAYWGHLEIVEVLLKNGADVNA 75
Query: 90 SAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSY 133
G PLH AA G +E+V +L PLH AA +G +E+V +LL Y
Sbjct: 76 YDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKY 135
Query: 134 GAD 136
GAD
Sbjct: 136 GAD 138
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
G TPLH AA G+++ V L+ + A D G TPLH AA G L+I +LL GAD
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNGADVNA-YDTLGSTPLHLAAHFGHLEIVEVLLKNGAD 105
Query: 87 PSDSAIGGIRPLHDAAEKGCVEMVRLL 113
+ GI PLH AA +G +E+V +L
Sbjct: 106 VNAKDDNGITPLHLAANRGHLEIVEVL 132
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 152 RPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITS 191
+ L +AA G + VR+L++ GAD A G TPL + +
Sbjct: 16 KKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAA 55
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 78/184 (42%), Gaps = 28/184 (15%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKD---NAGYTPLHEAASHGWLDIARLLLMY 83
G+TPLH A G + AV + F G D N TPLH A + RLL+
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68
Query: 84 GADPSDSAIGG---------------IRPLHDAAEKGCVEMVR-----LLPLHDAAEKGC 123
GA P G +R L D+A G +++ L LH A C
Sbjct: 69 GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 128
Query: 124 VEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAG 183
E V+LLL GAD AV S S PL A E + MV+LLL +GA+ Y+G
Sbjct: 129 QETVQLLLERGAD----IDAVDIKSGRS-PLIHAVENNSLSMVQLLLQHGANVNAQMYSG 183
Query: 184 HTPL 187
+ L
Sbjct: 184 SSAL 187
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
G T LH A + V LE+ + A +G +PL A + L + +LLL +GA+
Sbjct: 116 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN 175
Query: 87 PSDSAIGGIRPLHDAAEKGCVEMVRLLPLH--DAAEKGC 123
+ G LH A+ +G + +VR L D++ K C
Sbjct: 176 VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC 214
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
G TPLH AA+ G+ + V L K + A + G TPLH AA +G +I +LLL GAD
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNA-RSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 87 PSDSAIGGIRPLHDAAEKGCVEMVRLL 113
+ + G P H A + G E+V+LL
Sbjct: 68 VNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
PLH+AA+ G E V+ LLS GAD S + PLH AA+ G E+V+LLL+ G
Sbjct: 12 PLHNAAKNGHAEEVKKLLSKGADVNARSKD------GNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 174 ADPLLASYAGHTPLSITSDETTRKLLQYHLADVRG 208
AD S G+TP + ++++ L D +G
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVK--LLDAKG 98
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 16/98 (16%)
Query: 61 GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------- 113
G TPLH AA +G + + LL GAD + + G PLH AA+ G E+V+LL
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 114 ---------PLHDAAEKGCVEMVRLLLSYGADPLLASY 142
P H A + G E+V+LL + GAD S+
Sbjct: 69 NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSW 106
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
G TPLH AA+ G+ + V L K + A + G TP H A +G +I +LL GAD
Sbjct: 42 GNTPLHLAAKNGHAEIVKLLLAKGADVNA-RSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 86/204 (42%), Gaps = 28/204 (13%)
Query: 31 LHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDS 90
L +A + +D V LE ++ ++ G+TPLH A DI LLL +GADP
Sbjct: 29 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 88
Query: 91 AIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYG 134
G P AA G V++++L +AA G V+ ++ L G
Sbjct: 89 KKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 148
Query: 135 ADPLLASYAV----YFLSLPSRPLHDAAEKGCVEMVRLLL-SYGADPLLASYAGHTPLS- 188
A+ L + L DAAEKG VE++++LL GAD G L
Sbjct: 149 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH 208
Query: 189 --ITSD----ETTRKLLQYHLADV 206
++SD E LL H ADV
Sbjct: 209 ALLSSDDSDVEAITHLLLDHGADV 232
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 87/211 (41%), Gaps = 44/211 (20%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMYG 84
G TPLH A ++ D V L HG P + G TP AA G + + +L L G
Sbjct: 59 GWTPLHNAVQMSREDIVELLLR---HGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKG 115
Query: 85 ADPSDSAIGGIRPLHDAAEKGCVEMVRLL--------------------------PLHDA 118
AD ++ G +AA G V+ ++ L L DA
Sbjct: 116 ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 175
Query: 119 AEKGCVEMVRLLL-SYGAD----PLLASYAVYFLSLPSRPLHDAAEKGCVEMV-RLLLSY 172
AEKG VE++++LL GAD + A+ L S + VE + LLL +
Sbjct: 176 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS-------DDSDVEAITHLLLDH 228
Query: 173 GADPLLASYAGHTPLSITSDETTRKLLQYHL 203
GAD + G TPL + ++ L+Q L
Sbjct: 229 GADVNVRGERGKTPLILAVEKKHLGLVQRLL 259
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 86/205 (41%), Gaps = 28/205 (13%)
Query: 31 LHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDS 90
L +A + +D V LE ++ ++ G+TPLH A DI LLL +GADP
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68
Query: 91 AIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYG 134
G P AA G V++++L +AA G V+ ++ L G
Sbjct: 69 KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128
Query: 135 ADPLLASYAV----YFLSLPSRPLHDAAEKGCVEMVRLLL-SYGADPLLASYAGHTPLS- 188
A+ L + L DAAEKG VE++++LL GAD G L
Sbjct: 129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH 188
Query: 189 --ITSD----ETTRKLLQYHLADVR 207
++SD E LL H ADV
Sbjct: 189 ALLSSDDSDVEAITHLLLDHGADVN 213
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 87/211 (41%), Gaps = 44/211 (20%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNAGYTPLHEAASHGWLDIARLLLMYG 84
G TPLH A ++ D V L HG P + G TP AA G + + +L L G
Sbjct: 39 GWTPLHNAVQMSREDIVELLLR---HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKG 95
Query: 85 ADPSDSAIGGIRPLHDAAEKGCVEMVRLL--------------------------PLHDA 118
AD ++ G +AA G V+ ++ L L DA
Sbjct: 96 ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 155
Query: 119 AEKGCVEMVRLLL-SYGAD----PLLASYAVYFLSLPSRPLHDAAEKGCVEMVR-LLLSY 172
AEKG VE++++LL GAD + A+ L S + VE + LLL +
Sbjct: 156 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS-------DDSDVEAITHLLLDH 208
Query: 173 GADPLLASYAGHTPLSITSDETTRKLLQYHL 203
GAD + G TPL + ++ L+Q L
Sbjct: 209 GADVNVRGERGKTPLILAVEKKHLGLVQRLL 239
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 61/135 (45%), Gaps = 23/135 (17%)
Query: 64 PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGC 123
L EA G D R+L+ GAD + + DA + PLH AA++G
Sbjct: 17 KLLEATRAGQDDEVRILMANGAD--------VNAMDDAG---------VTPLHLAAKRGH 59
Query: 124 VEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAG 183
+E+V +LL +GAD + S PLH AA G +E+V +LL YGAD G
Sbjct: 60 LEIVEVLLKHGADVNASD------SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Query: 184 HTPLSITSDETTRKL 198
T I+ D L
Sbjct: 114 KTAFDISIDNGNEDL 128
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 30 PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
L A R G D V + + A D+AG TPLH AA G L+I +LL +GAD +
Sbjct: 17 KLLEATRAGQDDEVRILMANGADVNAM-DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA 75
Query: 90 SAIGGIRPLHDAAEKGCVEMVRLL 113
S G PLH AA G +E+V +L
Sbjct: 76 SDSWGRTPLHLAATVGHLEIVEVL 99
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGP--APKDNAGYTPLHEAASHGWLDIARLLLMYG 84
G TPLH AA+ G+++ V L+ HG D+ G TPLH AA+ G L+I +LL YG
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLK---HGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYG 103
Query: 85 ADPS 88
AD +
Sbjct: 104 ADVN 107
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
L +A G + VR+L++ GAD A PLH AA++G +E+V +LL +G
Sbjct: 17 KLLEATRAGQDDEVRILMANGADVNAMDDA------GVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 174 ADPLLASYAGHTPLSITSD----ETTRKLLQYHLADVRGHE 210
AD + G TPL + + E LL+Y ADV +
Sbjct: 71 ADVNASDSWGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQD 110
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 66/154 (42%), Gaps = 22/154 (14%)
Query: 64 PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---------- 113
L EAA G D R+L+ GAD + G PLH AA G +E+V +L
Sbjct: 17 KLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV 76
Query: 114 ------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVR 167
PL AA G +E+V +LL GAD + PLH AA G +E+V
Sbjct: 77 DHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGH------TPLHLAAMFGHLEIVE 130
Query: 168 LLLSYGADPLLASYAGHTPLSITSDETTRKLLQY 201
+LL GAD G T I+ D L +
Sbjct: 131 VLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
G TPLH AA G+++ V L+ + A D+AG TPL AA G L+I +LL GAD
Sbjct: 47 GWTPLHLAAFNGHLEIVEVLLKNGADVNAV-DHAGMTPLRLAALFGHLEIVEVLLKNGAD 105
Query: 87 PSDSAIGGIRPLHDAAEKGCVEMVRLL 113
+ + + G PLH AA G +E+V +L
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVL 132
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 14 GAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGW 73
GA+V + H G TPL AA G+++ V L+ + A D G+TPLH AA G
Sbjct: 70 GADVNAV---DHAGMTPLRLAALFGHLEIVEVLLKNGADVNA-NDMEGHTPLHLAAMFGH 125
Query: 74 LDIARLLLMYGADPS 88
L+I +LL GAD +
Sbjct: 126 LEIVEVLLKNGADVN 140
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 14 GAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGW 73
GA+V + N G TPLH AA G+++ V L+ + A +D G T + +G
Sbjct: 103 GADVNA---NDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA-QDKFGKTAFDISIDNGN 158
Query: 74 LDIARLL 80
D+A +L
Sbjct: 159 EDLAEIL 165
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 85/192 (44%), Gaps = 13/192 (6%)
Query: 5 SLGDTVEDVGAEVRSWVINKHH--GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGY 62
S GDT E + R IN + G T LH+A +D V + +E ++ P DN G+
Sbjct: 49 SSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP-DNEGW 107
Query: 63 TPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLH-----DAAEKGCVEMVRLLPLHD 117
PLH AAS G+LDIA L+ GA G PL E E+ R +
Sbjct: 108 IPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIE 167
Query: 118 AAEKGCVEMVRLLLSYGADPLLASYA--VYFLSLPSRPLHDAAEKGCVEMVRLLLSYGAD 175
AA K E R++L L + + V LH AA KG E+++LL+ D
Sbjct: 168 AARK---EEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD 224
Query: 176 PLLASYAGHTPL 187
+ Y G TPL
Sbjct: 225 VNIKDYDGWTPL 236
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 31/114 (27%)
Query: 80 LLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLL 139
LL GAD + + + G+ LH A C++ V+MV+ L+ GA+
Sbjct: 59 LLERGADINYANVDGLTALHQA----CID-------------DNVDMVKFLVENGAN--- 98
Query: 140 ASYAVYFLSLPSR----PLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSI 189
++ P PLH AA G +++ L+S GA + G TPL I
Sbjct: 99 -------INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 62/136 (45%), Gaps = 25/136 (18%)
Query: 64 PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGC 123
L EA G D R+L+ GAD + + DA + PLH AA++G
Sbjct: 17 KLLEATRAGQDDEVRILMANGAD--------VNAMDDAG---------VTPLHLAAKRGH 59
Query: 124 VEMVRLLLSYGADPLLASYAVYFLSLPSR-PLHDAAEKGCVEMVRLLLSYGADPLLASYA 182
+E+V +LL +GAD V + R PLH AA G +E+V +LL YGAD
Sbjct: 60 LEIVEVLLKHGAD-------VNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF 112
Query: 183 GHTPLSITSDETTRKL 198
G T I+ D L
Sbjct: 113 GKTAFDISIDNGNEDL 128
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 30 PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
L A R G D V + + A D+AG TPLH AA G L+I +LL +GAD +
Sbjct: 17 KLLEATRAGQDDEVRILMANGADVNAM-DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA 75
Query: 90 SAIGGIRPLHDAAEKGCVEMVRLL 113
I G PLH AA G +E+V +L
Sbjct: 76 RDIWGRTPLHLAATVGHLEIVEVL 99
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGP--APKDNAGYTPLHEAASHGWLDIARLLLMYG 84
G TPLH AA+ G+++ V L+ HG +D G TPLH AA+ G L+I +LL YG
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLK---HGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYG 103
Query: 85 ADPS 88
AD +
Sbjct: 104 ADVN 107
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
L +A G + VR+L++ GAD A PLH AA++G +E+V +LL +G
Sbjct: 17 KLLEATRAGQDDEVRILMANGADVNAMDDA------GVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 174 ADPLLASYAGHTPLSITSD----ETTRKLLQYHLADVRGHE 210
AD G TPL + + E LL+Y ADV +
Sbjct: 71 ADVNARDIWGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQD 110
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 62/136 (45%), Gaps = 25/136 (18%)
Query: 64 PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGC 123
L EA G D R+L+ GAD + + DA + PLH AA++G
Sbjct: 17 KLLEATRAGQDDEVRILMANGAD--------VNAMDDAG---------VTPLHLAAKRGH 59
Query: 124 VEMVRLLLSYGADPLLASYAVYFLSLPSR-PLHDAAEKGCVEMVRLLLSYGADPLLASYA 182
+E+V +LL +GAD V + R PLH AA G +E+V +LL YGAD
Sbjct: 60 LEIVEVLLKHGAD-------VNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF 112
Query: 183 GHTPLSITSDETTRKL 198
G T I+ D L
Sbjct: 113 GKTAFDISIDNGNEDL 128
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 30 PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
L A R G D V + + A D+AG TPLH AA G L+I +LL +GAD +
Sbjct: 17 KLLEATRAGQDDEVRILMANGADVNAM-DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA 75
Query: 90 SAIGGIRPLHDAAEKGCVEMVRLL 113
S I G PLH AA G +E+V +L
Sbjct: 76 SDIWGRTPLHLAATVGHLEIVEVL 99
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGP--APKDNAGYTPLHEAASHGWLDIARLLLMYG 84
G TPLH AA+ G+++ V L+ HG D G TPLH AA+ G L+I +LL YG
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLK---HGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYG 103
Query: 85 ADPS 88
AD +
Sbjct: 104 ADVN 107
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
L +A G + VR+L++ GAD A PLH AA++G +E+V +LL +G
Sbjct: 17 KLLEATRAGQDDEVRILMANGADVNAMDDA------GVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 174 ADPLLASYAGHTPLSITSD----ETTRKLLQYHLADVRGHE 210
AD + G TPL + + E LL+Y ADV +
Sbjct: 71 ADVNASDIWGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQD 110
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 60/135 (44%), Gaps = 23/135 (17%)
Query: 64 PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGC 123
L EAA G D R+L+ GAD + ++ L PLH AA+ G
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVN-----------------ALDEDGLTPLHLAAQLGH 59
Query: 124 VEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAG 183
+E+V +LL YGAD + PLH AA +G +E+V +LL +GAD G
Sbjct: 60 LEIVEVLLKYGADVNAED------NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFG 113
Query: 184 HTPLSITSDETTRKL 198
T I+ D L
Sbjct: 114 KTAFDISIDNGNEDL 128
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 14 GAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGW 73
GA+V + G TPLH AA+LG+++ V L K+ +DN G TPLH AA G
Sbjct: 37 GADVNAL---DEDGLTPLHLAAQLGHLEIVEVLL-KYGADVNAEDNFGITPLHLAAIRGH 92
Query: 74 LDIARLLLMYGADPS 88
L+I +LL +GAD +
Sbjct: 93 LEIVEVLLKHGADVN 107
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 30 PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
L AAR G D V + + A D G TPLH AA G L+I +LL YGAD +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAL-DEDGLTPLHLAAQLGHLEIVEVLLKYGADVNA 75
Query: 90 SAIGGIRPLHDAAEKGCVEMVRLLPLHDA 118
GI PLH AA +G +E+V +L H A
Sbjct: 76 EDNFGITPLHLAAIRGHLEIVEVLLKHGA 104
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 46/97 (47%), Gaps = 22/97 (22%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPS-RPLHDAAEKGCVEMVRLLLSY 172
L +AA G + VR+L++ GAD V L PLH AA+ G +E+V +LL Y
Sbjct: 17 KLLEAARAGQDDEVRILMANGAD-------VNALDEDGLTPLHLAAQLGHLEIVEVLLKY 69
Query: 173 GADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGH 209
GAD G TPL HLA +RGH
Sbjct: 70 GADVNAEDNFGITPL--------------HLAAIRGH 92
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 67/161 (41%), Gaps = 37/161 (22%)
Query: 57 KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLP-- 114
++N TPLH A +IA LL G DP G PLH A E+GC+ V +L
Sbjct: 41 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS 100
Query: 115 --------------------LHDAAEKGCVEMVRLLLSYGAD-----PLLASYAVYFLSL 149
LH A+ G + +V LL+S GAD P A
Sbjct: 101 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA------ 154
Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSIT 190
LH A + ++V LLL GAD +Y G++P +T
Sbjct: 155 ----LHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT 191
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 32/74 (43%)
Query: 24 KHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY 83
++G T LH A+ GY+ V + + A + G T LH A D+ LLL
Sbjct: 114 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 173
Query: 84 GADPSDSAIGGIRP 97
GAD + G P
Sbjct: 174 GADVNRVTYQGYSP 187
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 76/182 (41%), Gaps = 41/182 (22%)
Query: 57 KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLP-- 114
++N TPLH A +IA LL G DP G PLH A E+GC+ V +L
Sbjct: 38 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS 97
Query: 115 --------------------LHDAAEKGCVEMVRLLLSYGAD-----PLLASYAVYFLSL 149
LH A+ G + +V LL+S GAD P A
Sbjct: 98 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA------ 151
Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSIT----SDETTRKLLQYHLAD 205
LH A + ++V LLL GAD +Y G++P +T S ++L Q L +
Sbjct: 152 ----LHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN 207
Query: 206 VR 207
++
Sbjct: 208 LQ 209
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 32/74 (43%)
Query: 24 KHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY 83
++G T LH A+ GY+ V + + A + G T LH A D+ LLL
Sbjct: 111 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 170
Query: 84 GADPSDSAIGGIRP 97
GAD + G P
Sbjct: 171 GADVNRVTYQGYSP 184
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 84/183 (45%), Gaps = 31/183 (16%)
Query: 62 YTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL-------- 113
++P+HEAA HG R L+ G + + PLH+A G + V++L
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 114 --------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEM 165
PL +A G + V LLL +GA +V S + P+H+AA +G VE
Sbjct: 64 GVTADWHTPLFNACVSGSWDCVNLLLQHGA-------SVQPESDLASPIHEAARRGHVEC 116
Query: 166 VRLLLSYGAD-PLLASYAGHTPLSITSDETTRKLLQYHL---ADV---RGHEAPKWDFAG 218
V L++YG + S+ G TPL + + R ++ L ADV +G ++P A
Sbjct: 117 VNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVAR 175
Query: 219 PAS 221
AS
Sbjct: 176 TAS 178
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 79/200 (39%), Gaps = 37/200 (18%)
Query: 18 RSWVINKHHGE--TPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAG--YTPLHEAASHGW 73
+ W +N + +PLH A G++ V L+ HG +TPL A G
Sbjct: 25 QGWAVNIITADHVSPLHEACLGGHLSCVKILLK---HGAQVNGVTADWHTPLFNACVSGS 81
Query: 74 LDIARLLLMYGAD---PSDSAIGGIRPLHDAAEKGCVEMVRLL----------------P 114
D LLL +GA SD A P+H+AA +G VE V L P
Sbjct: 82 WDCVNLLLQHGASVQPESDLA----SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTP 137
Query: 115 LHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGA 174
L+ A E V+ LL GAD V PLH A E+ LL+ +GA
Sbjct: 138 LYLACENQQRACVKKLLESGAD-------VNQGKGQDSPLHAVARTASEELACLLMDFGA 190
Query: 175 DPLLASYAGHTPLSITSDET 194
D + G P+ + E+
Sbjct: 191 DTQAKNAEGKRPVELVPPES 210
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 29/173 (16%)
Query: 62 YTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL-------- 113
++P+HEAA HG R L+ G + + PLH+A G + V++L
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Query: 114 --------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEM 165
PL +A G + V LLL +GA +V S + P+H+AA +G VE
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGA-------SVQPESDLASPIHEAARRGHVEC 172
Query: 166 VRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHL---ADV---RGHEAP 212
V L++YG + TPL + + R ++ L ADV +G ++P
Sbjct: 173 VNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSP 225
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 78/200 (39%), Gaps = 37/200 (18%)
Query: 18 RSWVINKHHGE--TPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAG--YTPLHEAASHGW 73
+ W +N + +PLH A G++ V L+ HG +TPL A G
Sbjct: 81 QGWAVNIITADHVSPLHEACLGGHLSCVKILLK---HGAQVNGVTADWHTPLFNACVSGS 137
Query: 74 LDIARLLLMYGAD---PSDSAIGGIRPLHDAAEKGCVEMVRLL----------------P 114
D LLL +GA SD A P+H+AA +G VE V L P
Sbjct: 138 WDCVNLLLQHGASVQPESDLA----SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTP 193
Query: 115 LHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGA 174
L+ A E V+ LL GAD V PLH E+ LL+ +GA
Sbjct: 194 LYLACENQQRACVKKLLESGAD-------VNQGKGQDSPLHAVVRTASEELACLLMDFGA 246
Query: 175 DPLLASYAGHTPLSITSDET 194
D + G P+ + E+
Sbjct: 247 DTQAKNAEGKRPVELVPPES 266
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 65/169 (38%), Gaps = 25/169 (14%)
Query: 30 PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
L AAR G D V + + P D G +PLH AA +G +LL G
Sbjct: 5 KLLEAARAGQDDEVRILMANGA--PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS--- 59
Query: 90 SAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSL 149
DA K V PLH AA +G +V +LL +GAD L
Sbjct: 60 ---------RDARTK-----VDRTPLHMAASEGHANIVEVLLKHGADVNAKDM------L 99
Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKL 198
LH A E E+V LL+ YGAD S T I+ D L
Sbjct: 100 KMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDL 148
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 18/110 (16%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
G +PLH AA+ G+ L A + TPLH AAS G +I +LL +GAD
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDA-RTKVDRTPLHMAASEGHANIVEVLLKHGAD 92
Query: 87 PSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGAD 136
+ +M+++ LH A E E+V LL+ YGAD
Sbjct: 93 VN-----------------AKDMLKMTALHWATEHNHQEVVELLIKYGAD 125
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 55/142 (38%), Gaps = 28/142 (19%)
Query: 64 PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGC 123
L EAA G D R+L+ GA P + G PLH AA+ G +L
Sbjct: 5 KLLEAARAGQDDEVRILMANGA-PFTTDWLGTSPLHLAAQYGHFSTTEVL---------- 53
Query: 124 VEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGAD----PLLA 179
+R +S A + PLH AA +G +V +LL +GAD +L
Sbjct: 54 ---LRAGVSRDART----------KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLK 100
Query: 180 SYAGHTPLSITSDETTRKLLQY 201
A H E L++Y
Sbjct: 101 MTALHWATEHNHQEVVELLIKY 122
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 42 AVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLH 99
+ A LE G +P +D +G +P+H+AA G+LD ++L+ +GAD + G P+H
Sbjct: 53 STAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIH 112
Query: 100 DAAEKGCVEMVRLL---------------PLHDAAEKGCVEMVRLLLSYGADPL 138
A ++G +V L PL A ++G ++V +L + PL
Sbjct: 113 LAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGHMVAPL 166
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 22 INKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLL 81
+ G +P+H AAR G++D + +E + P D G P+H A G + L
Sbjct: 69 VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP-DGTGALPIHLAVQEGHTAVVSFLA 127
Query: 82 MYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLH 116
+D G+ PL A ++G ++V +L H
Sbjct: 128 AE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 161
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 20/104 (19%)
Query: 130 LLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSI 189
LL GA P + + + P+HDAA G ++ +++L+ +GAD + G P+
Sbjct: 60 LLKQGASPNVQDTS------GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPI-- 111
Query: 190 TSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEPL 233
HLA GH A A + + G PL
Sbjct: 112 ------------HLAVQEGHTAVVSFLAAESDLHRRDARGLTPL 143
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 16/104 (15%)
Query: 58 DNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---- 113
D G+TPL AA+HG + + LL GADP G L A KG ++V++L
Sbjct: 49 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCG 108
Query: 114 ------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVY 145
PL A V+ V++LL GADP + + + Y
Sbjct: 109 VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGY 152
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADP-LLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSY 172
PL AA G + +V LL GADP LL LSL A KG ++V++LL
Sbjct: 55 PLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSL-------ACSKGYTDIVKMLLDC 107
Query: 173 GADPLLASYAGHTPL 187
G D + G TPL
Sbjct: 108 GVDVNEYDWNGGTPL 122
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 16/104 (15%)
Query: 58 DNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---- 113
D G+TPL AA+HG + + LL GADP G L A KG ++V++L
Sbjct: 33 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCG 92
Query: 114 ------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVY 145
PL A V+ V++LL GADP + + + Y
Sbjct: 93 VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGY 136
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADP-LLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSY 172
PL AA G + +V LL GADP LL LSL A KG ++V++LL
Sbjct: 39 PLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSL-------ACSKGYTDIVKMLLDC 91
Query: 173 GADPLLASYAGHTPL 187
G D + G TPL
Sbjct: 92 GVDVNEYDWNGGTPL 106
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 29 TPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPS 88
PLH A + G+ V CL + P KD +G TPL A S G ++ LLL +GA +
Sbjct: 121 VPLHLACQQGHFQVVK-CLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASIN 179
Query: 89 DSAIGGIRPLHDAAEKGCVEMVRLLPLHDAA 119
S G LH+A + V +V LL LH A+
Sbjct: 180 ASNNKGNTALHEAVIEKHVFVVELLLLHGAS 210
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 23/127 (18%)
Query: 61 GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAE 120
G +PLH AA HG D+ LLL +GA+ G R A +PLH A +
Sbjct: 86 GSSPLHVAALHGRADLIPLLLKHGAN------AGARNADQA-----------VPLHLACQ 128
Query: 121 KGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLAS 180
+G ++V+ LL A P + + PL A G E+V LLL +GA ++
Sbjct: 129 QGHFQVVKCLLDSNAKPNKKDLS------GNTPLIYACSGGHHELVALLLQHGASINASN 182
Query: 181 YAGHTPL 187
G+T L
Sbjct: 183 NKGNTAL 189
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 16/104 (15%)
Query: 58 DNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---- 113
D G+TPL AA+HG + + LL GADP G L A KG ++V++L
Sbjct: 31 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCG 90
Query: 114 ------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVY 145
PL A V+ V++LL GADP + + + Y
Sbjct: 91 VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGY 134
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADP-LLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSY 172
PL AA G + +V LL GADP LL LSL A KG ++V++LL
Sbjct: 37 PLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSL-------ACSKGYTDIVKMLLDC 89
Query: 173 GADPLLASYAGHTPL 187
G D + G TPL
Sbjct: 90 GVDVNEYDWNGGTPL 104
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 17/106 (16%)
Query: 42 AVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLH 99
+ A LE G +P +D +G +P+H+AA G+LD ++L+ +GAD + G P+H
Sbjct: 47 STAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIH 106
Query: 100 DAAEKGCVEMVRLL---------------PLHDAAEKGCVEMVRLL 130
A ++G +V L PL A ++G ++V +L
Sbjct: 107 LAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
G +P+H AAR G++D + +E + P D G P+H A G + L +D
Sbjct: 68 GTSPVHDAARTGFLDTLKVLVEHGADVNVP-DGTGALPIHLAVQEGHTAVVSFLAAE-SD 125
Query: 87 PSDSAIGGIRPLHDAAEKGCVEMVRLLPLH 116
G+ PL A ++G ++V +L H
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 20/104 (19%)
Query: 130 LLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSI 189
LL GA P + + + P+HDAA G ++ +++L+ +GAD + G P+
Sbjct: 54 LLKQGASPNVQDTS------GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPI-- 105
Query: 190 TSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEPL 233
HLA GH A A + + G PL
Sbjct: 106 ------------HLAVQEGHTAVVSFLAAESDLHRRDARGLTPL 137
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 50/107 (46%), Gaps = 18/107 (16%)
Query: 30 PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
L AAR G D V + + A KD G TPL+ A +HG L+I +LL GAD +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNA-KDEYGLTPLYLATAHGHLEIVEVLLKNGADVN- 74
Query: 90 SAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGAD 136
V+ + PLH AA G +E+ +LL +GAD
Sbjct: 75 ----------------AVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD 105
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 62/140 (44%), Gaps = 26/140 (18%)
Query: 64 PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGC 123
L EAA G D R+L+ GAD + + L PL+ A G
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVN-----------------AKDEYGLTPLYLATAHGH 59
Query: 124 VEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAG 183
+E+V +LL GAD + A A+ F PLH AA G +E+ +LL +GAD G
Sbjct: 60 LEIVEVLLKNGAD-VNAVDAIGF-----TPLHLAAFIGHLEIAEVLLKHGADVNAQDKFG 113
Query: 184 HTPLSIT---SDETTRKLLQ 200
T I+ +E ++LQ
Sbjct: 114 KTAFDISIGNGNEDLAEILQ 133
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 14 GAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGW 73
GA+V + +G TPL+ A G+++ V L+ + A D G+TPLH AA G
Sbjct: 37 GADVNA---KDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV-DAIGFTPLHLAAFIGH 92
Query: 74 LDIARLLLMYGADPS 88
L+IA +LL +GAD +
Sbjct: 93 LEIAEVLLKHGADVN 107
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
L +AA G + VR+L++ GAD + + Y L+ PL+ A G +E+V +LL G
Sbjct: 17 KLLEAARAGQDDEVRILMANGAD--VNAKDEYGLT----PLYLATAHGHLEIVEVLLKNG 70
Query: 174 ADPLLASYAGHTPLSITSD----ETTRKLLQYHLADVRGHE 210
AD G TPL + + E LL+ H ADV +
Sbjct: 71 ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK-HGADVNAQD 110
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 58/135 (42%), Gaps = 23/135 (17%)
Query: 64 PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGC 123
L EAA G D R+L+ GAD + A +K V L PLH AA
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVN------------AEDK-----VGLTPLHLAAMNDH 59
Query: 124 VEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAG 183
+E+V +LL GAD ++ PLH A G +E+V +LL +GAD G
Sbjct: 60 LEIVEVLLKNGAD------VNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFG 113
Query: 184 HTPLSITSDETTRKL 198
T I+ D L
Sbjct: 114 KTAFDISIDNGNEDL 128
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 18/107 (16%)
Query: 30 PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
L AAR G D V + + A +D G TPLH AA + L+I +LL GAD +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNA-EDKVGLTPLHLAAMNDHLEIVEVLLKNGADVN- 74
Query: 90 SAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGAD 136
++ + PLH A G +E+V +LL +GAD
Sbjct: 75 ----------------AIDAIGETPLHLVAMYGHLEIVEVLLKHGAD 105
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
G TPLH AA +++ V L+ + A D G TPLH A +G L+I +LL +GAD
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLLKNGADVNAI-DAIGETPLHLVAMYGHLEIVEVLLKHGAD 105
Query: 87 PS 88
+
Sbjct: 106 VN 107
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
L +AA G + VR+L++ GAD + A V PLH AA +E+V +LL G
Sbjct: 17 KLLEAARAGQDDEVRILMANGAD-VNAEDKVGL-----TPLHLAAMNDHLEIVEVLLKNG 70
Query: 174 ADPLLASYAGHTPLSITSD----ETTRKLLQYHLADVRGHE 210
AD G TPL + + E LL+ H ADV +
Sbjct: 71 ADVNAIDAIGETPLHLVAMYGHLEIVEVLLK-HGADVNAQD 110
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 14 GAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPK--DNAGYTPLHEAASH 71
GA+V + N G TPLH AA +++ V L+ HG DN G TPLH AA
Sbjct: 37 GADVNA---NDRKGNTPLHLAADYDHLEIVEVLLK---HGADVNAHDNDGSTPLHLAALF 90
Query: 72 GWLDIARLLLMYGADPS 88
G L+I +LL +GAD +
Sbjct: 91 GHLEIVEVLLKHGADVN 107
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 59/135 (43%), Gaps = 23/135 (17%)
Query: 64 PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGC 123
L EAA G D R+L+ GAD + + KG PLH AA+
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAND-----------RKGNT------PLHLAADYDH 59
Query: 124 VEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAG 183
+E+V +LL +GAD + S PLH AA G +E+V +LL +GAD G
Sbjct: 60 LEIVEVLLKHGADVNAHD------NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFG 113
Query: 184 HTPLSITSDETTRKL 198
T I+ D L
Sbjct: 114 KTAFDISIDNGNEDL 128
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 30 PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
L AAR G D V + + A D G TPLH AA + L+I +LL +GAD +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNA-NDRKGNTPLHLAADYDHLEIVEVLLKHGADVNA 75
Query: 90 SAIGGIRPLHDAAEKGCVEMVRLLPLHDA 118
G PLH AA G +E+V +L H A
Sbjct: 76 HDNDGSTPLHLAALFGHLEIVEVLLKHGA 104
Score = 33.9 bits (76), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 152 RPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADVR 207
+ L +AA G + VR+L++ GAD G+TPL + +D E LL+ H ADV
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLK-HGADVN 74
Query: 208 GHE 210
H+
Sbjct: 75 AHD 77
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 78/196 (39%), Gaps = 23/196 (11%)
Query: 29 TPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPS 88
T LH AA ID V Y + K + + TPLH A G L + L+ YGADPS
Sbjct: 44 TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS 103
Query: 89 DSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKG-CVEMVRLLL 131
G +H AA+ G +V L PL AA + V+ RLLL
Sbjct: 104 LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL 163
Query: 132 SYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITS 191
++ L Y + LH A G ++ LLL GA+ + G + L +
Sbjct: 164 TFNVSVNLGDK--YH---KNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAK 218
Query: 192 DETTRKLLQYHLADVR 207
++ HL + R
Sbjct: 219 QRKNVWMIN-HLQEAR 233
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 23/170 (13%)
Query: 31 LHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDS 90
+H+ A G +D + L K + D G+TPL A++ G ++ R LL +GADP
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP--- 62
Query: 91 AIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLP 150
H A++ R L A+ G ++V LLL D + +
Sbjct: 63 --------HILAKE------RESALSLASTGGYTDIVGLLLERDVDINIYDWN------G 102
Query: 151 SRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQ 200
PL A V+ V LL+ GAD + +G+TP+ + RK+ Q
Sbjct: 103 GTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ 152
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 23/137 (16%)
Query: 65 LHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCV 124
L AA+ G ++ R LL GADP+ G RP+ V M+ G
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQ-------VMMM-----------GSA 57
Query: 125 EMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGH 184
++ LLL +GA+P A A +RP+HDAA +G ++ + +L GA + G
Sbjct: 58 QVAELLLLHGAEPNCADPATL-----TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGR 112
Query: 185 TPLSITSDETTRKLLQY 201
P+ + ++ R + +Y
Sbjct: 113 LPVDLAEEQGHRDIARY 129
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 54 PAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
P KD G+ +H+AA G+LD + LL + AD + G PLH AA++G + +V L
Sbjct: 63 PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 114 PLHDAAEKG 122
H A+ G
Sbjct: 123 VKHTASNVG 131
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGA 85
G +H AAR G++D + LE F +DN G PLH AA G L + L+ + A
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 16/77 (20%)
Query: 75 DIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRL----------------LPLHDA 118
+IAR LL+ GA+P G +HDAA G ++ ++ LPLH A
Sbjct: 51 EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLA 110
Query: 119 AEKGCVEMVRLLLSYGA 135
A++G + +V L+ + A
Sbjct: 111 AKEGHLRVVEFLVKHTA 127
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 23/170 (13%)
Query: 31 LHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDS 90
+H+ A G +D + L K + D G+TPL A++ G ++ R LL +GADP
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 91 AIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLP 150
A L A+ G ++V LL D + + G PLL YAV+
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDVD-------INIYDWNGGTPLL--YAVH----- 111
Query: 151 SRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQ 200
V+ V LL+ GAD + +G+TP+ + RK+ Q
Sbjct: 112 ---------GNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ 152
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 54 PAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
P KD G+ +H+AA G+LD + LL + AD + G PLH AA++G + +V L
Sbjct: 63 PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 114 PLHDAAEKG 122
H A+ G
Sbjct: 123 VKHTASNVG 131
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGA 85
G +H AAR G++D + LE F +DN G PLH AA G L + L+ + A
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 16/77 (20%)
Query: 75 DIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRL----------------LPLHDA 118
+IAR LL+ GA+P G +HDAA G ++ ++ LPLH A
Sbjct: 51 EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLA 110
Query: 119 AEKGCVEMVRLLLSYGA 135
A++G + +V L+ + A
Sbjct: 111 AKEGHLRVVEFLVKHTA 127
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 14 GAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGW 73
GA+V + N + G TPLH AA LG+++ V L+ + A N G TPLH AA
Sbjct: 37 GADVNA---NDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG-NTGRTPLHLAAWADH 92
Query: 74 LDIARLLLMYGADPS 88
L+I +LL +GAD +
Sbjct: 93 LEIVEVLLKHGADVN 107
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 30 PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
L AAR G D V L D G+TPLH AA G L+I +LL GAD +
Sbjct: 17 KLLEAARAGQDDEV-RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNA 75
Query: 90 SAIGGIRPLHDAAEKGCVEMVRLLPLHDA 118
+ G PLH AA +E+V +L H A
Sbjct: 76 TGNTGRTPLHLAAWADHLEIVEVLLKHGA 104
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 56/135 (41%), Gaps = 23/135 (17%)
Query: 64 PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGC 123
L EAA G D R+L GAD + + G PLH AA M+ G
Sbjct: 17 KLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAA------ML-----------GH 59
Query: 124 VEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAG 183
+E+V +LL GAD + PLH AA +E+V +LL +GAD G
Sbjct: 60 LEIVEVLLKNGADVNATG------NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFG 113
Query: 184 HTPLSITSDETTRKL 198
T I+ D L
Sbjct: 114 KTAFDISIDNGNEDL 128
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 152 RPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITS 191
+ L +AA G + VR+L + GAD Y GHTPL + +
Sbjct: 16 KKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAA 55
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 54 PAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
P KD G+ +H+AA G LD + LL + AD + G PLH AA++G + +V L
Sbjct: 63 PDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 114 PLHDAAEKG 122
H A+ G
Sbjct: 123 VKHTASNVG 131
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 16/77 (20%)
Query: 75 DIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRL----------------LPLHDA 118
+IAR LL+ GA+P G +HDAA G ++ ++ LPLH A
Sbjct: 51 EIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLA 110
Query: 119 AEKGCVEMVRLLLSYGA 135
A++G + +V L+ + A
Sbjct: 111 AKEGHLRVVEFLVKHTA 127
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 14/91 (15%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR----PLHDAAEKGCVEMVRLL 169
PLH AA+ G +E++ LL GAD ++ P + PL A +G V V+LL
Sbjct: 38 PLHYAADCGQLEILEFLLLKGAD----------INAPDKHHITPLLSAVYEGHVSCVKLL 87
Query: 170 LSYGADPLLASYAGHTPLSITSDETTRKLLQ 200
LS GAD + G T L T ++ + LLQ
Sbjct: 88 LSKGADKTVKGPDGLTALEATDNQAIKALLQ 118
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 8 DTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHE 67
D V+D A+ G PLH AA G ++ + + L K + AP D TPL
Sbjct: 16 DEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP-DKHHITPLLS 74
Query: 68 AASHGWLDIARLLLMYGADPSDSAIGGIRPLH 99
A G + +LLL GAD + G+ L
Sbjct: 75 AVYEGHVSCVKLLLSKGADKTVKGPDGLTALE 106
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 28/54 (51%)
Query: 60 AGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
G PLH AA G L+I LL+ GAD + I PL A +G V V+LL
Sbjct: 34 GGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLL 87
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 16/61 (26%)
Query: 152 RPLHDAAEKGCVEMVRLLLSYGAD----------PLL-ASYAGHTP-----LSITSDETT 195
+PLH AA+ G +E++ LL GAD PLL A Y GH LS +D+T
Sbjct: 37 KPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 96
Query: 196 R 196
+
Sbjct: 97 K 97
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 15/112 (13%)
Query: 42 AVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDA 101
AVA L K P +D +G +P+H+AA G+LD ++L+ +GAD + G P+H A
Sbjct: 57 AVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLA 116
Query: 102 AEKGCVEMVRLL---------------PLHDAAEKGCVEMVRLLLSYGADPL 138
+G +V L PL A ++G ++ +L + P+
Sbjct: 117 IREGHSSVVSFLAPESDLHHRDASGLTPLELARQRGAQNLMDILQGHMMIPM 168
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPK--DNAGYTPLHEAASHGWLDIARLLLMYG 84
G +P+H AAR G++D + +E HG D+ G P+H A G + L
Sbjct: 76 GTSPVHDAARTGFLDTLKVLVE---HGADVNALDSTGSLPIHLAIREGHSSVVS-FLAPE 131
Query: 85 ADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLH 116
+D G+ PL A ++G ++ +L H
Sbjct: 132 SDLHHRDASGLTPLELARQRGAQNLMDILQGH 163
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 130 LLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSI 189
LL GA P + + + P+HDAA G ++ +++L+ +GAD G P+ +
Sbjct: 62 LLKQGASPNVQDAS------GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHL 115
Query: 190 TSDETTRKLLQY 201
E ++ +
Sbjct: 116 AIREGHSSVVSF 127
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 15/112 (13%)
Query: 42 AVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDA 101
AVA L K P +D +G +P+H+AA G+LD ++L+ +GAD + G P+H A
Sbjct: 55 AVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLA 114
Query: 102 AEKGCVEMVRLL---------------PLHDAAEKGCVEMVRLLLSYGADPL 138
+G +V L PL A ++G ++ +L + P+
Sbjct: 115 IREGHSSVVSFLAPESDLHHRDASGLTPLELARQRGAQNLMDILQGHMMIPM 166
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPK--DNAGYTPLHEAASHGWLDIARLLLMYG 84
G +P+H AAR G++D + +E HG D+ G P+H A G + L
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVE---HGADVNALDSTGSLPIHLAIREGHSSVVS-FLAPE 129
Query: 85 ADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLH 116
+D G+ PL A ++G ++ +L H
Sbjct: 130 SDLHHRDASGLTPLELARQRGAQNLMDILQGH 161
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 130 LLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSI 189
LL GA P + + + P+HDAA G ++ +++L+ +GAD G P+ +
Sbjct: 60 LLKQGASPNVQDAS------GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHL 113
Query: 190 TSDETTRKLLQY 201
E ++ +
Sbjct: 114 AIREGHSSVVSF 125
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 22 INKHH--GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEA-----ASHGWL 74
+NKH+ G L AA G+ID V LE +++ GYT L EA + +
Sbjct: 99 LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ 158
Query: 75 DIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHD 117
DI +LL+ GAD S G + A +KG E+ ++L ++
Sbjct: 159 DIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 21/181 (11%)
Query: 43 VAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAA 102
V L+ ++ D G TPL+ A + ++IA+ L+ GAD + P A
Sbjct: 21 VKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAG 80
Query: 103 EKGCVEMVRLLPLHD-----------------AAEKGCVEMVRLLLSYGADPLLASYAVY 145
+G E++ + H AAEKG ++ V+LLL G + +
Sbjct: 81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFG 140
Query: 146 FLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQY 201
+ +L + ++V+LL+ GAD + +G T + + E ++ L QY
Sbjct: 141 YTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Query: 202 H 202
+
Sbjct: 201 N 201
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 54 PAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
P KD G+ +H+AA G+LD + LL AD + G PLH AA++G + +V L
Sbjct: 63 PDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 114 PLHDAAEKG 122
H A+ G
Sbjct: 123 VKHTASNVG 131
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGA 85
G +H AAR G++D + LE + +DN G PLH AA G L + L+ + A
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLENQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 16/77 (20%)
Query: 75 DIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRL----------------LPLHDA 118
+IAR LL+ GA+P G +HDAA G ++ ++ LPLH A
Sbjct: 51 EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLA 110
Query: 119 AEKGCVEMVRLLLSYGA 135
A++G + +V L+ + A
Sbjct: 111 AKEGHLRVVEFLVKHTA 127
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 54 PAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
P KD G +H+AA G+LD + LL + AD + G PLH AA++G + +V L
Sbjct: 63 PDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 114 PLHDAAEKG 122
H A+ G
Sbjct: 123 VKHTASNVG 131
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGA 85
G +H AAR G++D + LE F +DN G PLH AA G L + L+ + A
Sbjct: 70 GNAVIHDAARAGFLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 33.9 bits (76), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 16/77 (20%)
Query: 75 DIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRL----------------LPLHDA 118
+IAR LL+ GA+P G +HDAA G ++ ++ LPLH A
Sbjct: 51 EIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLA 110
Query: 119 AEKGCVEMVRLLLSYGA 135
A++G + +V L+ + A
Sbjct: 111 AKEGHLRVVEFLVKHTA 127
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 76/199 (38%), Gaps = 24/199 (12%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPK--DNAGYTPLHEAASHGWLDIARLLLMYG 84
G PLH + + ++ L K + D++G+TP H A S G L++ + L
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Query: 85 ADPSDSAI--GGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEM 126
P + I G+ LH A K E+ + L PLH AA G +++
Sbjct: 96 LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKL 155
Query: 127 VRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTP 186
+ LL G + + L H AE V L+ YGA+ L G
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPL----FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA 211
Query: 187 LSITSDETTRKLLQYHLAD 205
+ +E +K ++ D
Sbjct: 212 EDVALNEQVKKFFLNNVVD 230
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 14 GAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGW 73
GA VR I + PLHRAA +G + + +D G+TPL A + G
Sbjct: 130 GASVR---IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 186
Query: 74 LDIARLLL-MYGAD 86
D A LL+ YGA+
Sbjct: 187 GDAAVLLVEKYGAE 200
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 14/91 (15%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR----PLHDAAEKGCVEMVRLL 169
PLH AA+ G +E++ LL GAD ++ P + PL A +G V V+LL
Sbjct: 43 PLHYAADCGQLEILEFLLLKGAD----------INAPDKHHITPLLSAVYEGHVSCVKLL 92
Query: 170 LSYGADPLLASYAGHTPLSITSDETTRKLLQ 200
LS GAD + G T T ++ + LLQ
Sbjct: 93 LSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 28/54 (51%)
Query: 60 AGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
G PLH AA G L+I LL+ GAD + I PL A +G V V+LL
Sbjct: 39 GGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLL 92
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 8 DTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHE 67
D V+D A+ G PLH AA G ++ + + L K + AP D TPL
Sbjct: 21 DEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP-DKHHITPLLS 79
Query: 68 AASHGWLDIARLLLMYGADPS 88
A G + +LLL GAD +
Sbjct: 80 AVYEGHVSCVKLLLSKGADKT 100
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 16/61 (26%)
Query: 152 RPLHDAAEKGCVEMVRLLLSYGAD----------PLL-ASYAGHTP-----LSITSDETT 195
+PLH AA+ G +E++ LL GAD PLL A Y GH LS +D+T
Sbjct: 42 KPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 101
Query: 196 R 196
+
Sbjct: 102 K 102
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 76/199 (38%), Gaps = 24/199 (12%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPK--DNAGYTPLHEAASHGWLDIARLLLMYG 84
G PLH + + ++ L K + D++G+TP H A S G L++ + L
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Query: 85 ADPSDSAI--GGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEM 126
P + I G+ LH A K E+ + L PLH AA G +++
Sbjct: 96 LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKL 155
Query: 127 VRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTP 186
+ LL G + + L H AE V L+ YGA+ L G
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPL----FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA 211
Query: 187 LSITSDETTRKLLQYHLAD 205
+ +E +K ++ D
Sbjct: 212 EDVALNEQVKKFFLNNVVD 230
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 14 GAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGW 73
GA VR I + PLHRAA +G + + +D G+TPL A + G
Sbjct: 130 GASVR---IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 186
Query: 74 LDIARLLL-MYGAD 86
D A LL+ YGA+
Sbjct: 187 GDAAVLLVEKYGAE 200
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
L +AA G + VR+L++ GAD S PLH AA G +E+V+LLL G
Sbjct: 27 KLLEAARAGQDDEVRILMANGADVAAKDKN------GSTPLHLAARNGHLEVVKLLLEAG 80
Query: 174 ADPLLASYAGHTPLSITSDETTRKLLQY 201
AD G T I+ D L +
Sbjct: 81 ADVXAQDKFGKTAFDISIDNGNEDLAEI 108
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 30 PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
L AAR G D V + + A KD G TPLH AA +G L++ +LLL GAD
Sbjct: 27 KLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 82
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 64 PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
L EAA G D R+L+ GAD + G PLH AA G +E+V+LL
Sbjct: 27 KLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLL 76
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 16 EVRSWVIN-------KHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEA 68
EVR + N +G TPLH AAR G+++ V LE + A +D G T +
Sbjct: 39 EVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA-QDKFGKTAFDIS 97
Query: 69 ASHGWLDIARLL 80
+G D+A +L
Sbjct: 98 IDNGNEDLAEIL 109
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
L +AA G + VR+L++ GAD S PLH AA G +E+V+LLL G
Sbjct: 9 KLLEAARAGQDDEVRILMANGADVAAKDKN------GSTPLHLAARNGHLEVVKLLLEAG 62
Query: 174 ADPLLASYAGHTPLSITSDETTRKL 198
AD G T I+ D L
Sbjct: 63 ADVNAQDKFGKTAFDISIDNGNEDL 87
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 30 PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPS 88
L AAR G D V + + A KD G TPLH AA +G L++ +LLL GAD +
Sbjct: 9 KLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVN 66
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 64 PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
L EAA G D R+L+ GAD + G PLH AA G +E+V+LL
Sbjct: 9 KLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLL 58
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 16 EVRSWVIN-------KHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEA 68
EVR + N +G TPLH AAR G+++ V LE + A +D G T +
Sbjct: 21 EVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNA-QDKFGKTAFDIS 79
Query: 69 ASHGWLDIARLL 80
+G D+A +L
Sbjct: 80 IDNGNEDLAEIL 91
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 73/193 (37%), Gaps = 24/193 (12%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPK--DNAGYTPLHEAASHGWLDIARLLLMYG 84
G PLH + + ++ L K + D++G+TP H A S G L++ + L
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Query: 85 ADPSDSAI--GGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEM 126
P + I G+ LH A K E+ + L PLH AA G +++
Sbjct: 96 LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKL 155
Query: 127 VRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTP 186
+ LL G + + L H AE V L+ YGA+ L G
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPL----FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA 211
Query: 187 LSITSDETTRKLL 199
+ +E +K
Sbjct: 212 EDVALNEQVKKFF 224
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 14 GAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGW 73
GA VR I + PLHRAA +G + + +D G+TPL A + G
Sbjct: 130 GASVR---IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 186
Query: 74 LDIARLLL-MYGAD 86
D A LL+ YGA+
Sbjct: 187 GDAAVLLVEKYGAE 200
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 17 VRSWVINKH--------HGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEA 68
VR W+ N HG +PLH A R G V + + + + TPLH A
Sbjct: 21 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV-MNRGDDTPLHLA 79
Query: 69 ASHGWLDIARLLLMYGADPSDSAIGGIRPLH 99
ASHG DI + LL Y AD + G PLH
Sbjct: 80 ASHGHRDIVQKLLQYKADINAVNEHGNVPLH 110
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 36 RLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGI 95
R G AV L+ + D+ G++PLH A G + +L+M GA + G
Sbjct: 14 REGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD 73
Query: 96 RPLHDAAEKGCVEMVRLL 113
PLH AA G ++V+ L
Sbjct: 74 TPLHLAASHGHRDIVQKL 91
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
PLH A +G +V +L+ GA + + PLH AA G ++V+ LL Y
Sbjct: 42 PLHWACREGRSAVVEMLIMRGARINVMNRG------DDTPLHLAASHGHRDIVQKLLQYK 95
Query: 174 ADPLLASYAGHTPL 187
AD + G+ PL
Sbjct: 96 ADINAVNEHGNVPL 109
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 153 PLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQY 201
PLH A +G +V +L+ GA + + TPL + + + +KLLQY
Sbjct: 42 PLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY 94
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 17 VRSWVINKH--------HGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEA 68
VR W+ N HG +PLH A R G V + + + + TPLH A
Sbjct: 16 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV-MNRGDDTPLHLA 74
Query: 69 ASHGWLDIARLLLMYGADPSDSAIGGIRPLH 99
ASHG DI + LL Y AD + G PLH
Sbjct: 75 ASHGHRDIVQKLLQYKADINAVNEHGNVPLH 105
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 36 RLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGI 95
R G AV L+ + D+ G++PLH A G + +L+M GA + G
Sbjct: 9 REGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD 68
Query: 96 RPLHDAAEKGCVEMVRLL 113
PLH AA G ++V+ L
Sbjct: 69 TPLHLAASHGHRDIVQKL 86
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
PLH A +G +V +L+ GA + + PLH AA G ++V+ LL Y
Sbjct: 37 PLHWACREGRSAVVEMLIMRGARINVMNRG------DDTPLHLAASHGHRDIVQKLLQYK 90
Query: 174 ADPLLASYAGHTPL 187
AD + G+ PL
Sbjct: 91 ADINAVNEHGNVPL 104
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 153 PLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQY 201
PLH A +G +V +L+ GA + + TPL + + + +KLLQY
Sbjct: 37 PLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY 89
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 35/79 (44%), Gaps = 15/79 (18%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPS-----RPLHDAAEKGCVEMVRL 168
PLH A EMVRLL GAD L+ P PLH A E ++ L
Sbjct: 161 PLHVAVIHKDAEMVRLLRDAGAD----------LNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 169 LLSYGADPLLASYAGHTPL 187
LL GADP Y G TPL
Sbjct: 211 LLKAGADPTARMYGGRTPL 229
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 41/97 (42%)
Query: 24 KHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY 83
+ G TPLH A + V + + P+ G TPLH A + LLL
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214
Query: 84 GADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAE 120
GADP+ GG PL A + + RLL H A E
Sbjct: 215 GADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPE 251
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 35/79 (44%), Gaps = 15/79 (18%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPS-----RPLHDAAEKGCVEMVRL 168
PLH A EMVRLL GAD L+ P PLH A E ++ L
Sbjct: 161 PLHVAVIHKDAEMVRLLRDAGAD----------LNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 169 LLSYGADPLLASYAGHTPL 187
LL GADP Y G TPL
Sbjct: 211 LLKAGADPTARMYGGRTPL 229
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 41/97 (42%)
Query: 24 KHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY 83
+ G TPLH A + V + + P+ G TPLH A + LLL
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214
Query: 84 GADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAE 120
GADP+ GG PL A + + RLL H A E
Sbjct: 215 GADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPE 251
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 27/164 (16%)
Query: 65 LHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCV 124
L AA+ G ++ R LL GA+P+ G RP+ V M+ G
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQ-------VMMM-----------GSA 57
Query: 125 EMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGH 184
+ LLL +GA+P A A +RP+HDAA +G ++ + +L GA + G
Sbjct: 58 RVAELLLLHGAEPNCADPATL-----TRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR 112
Query: 185 TPLSITSDETTRKLLQYHLA---DVRGHEAPKWDFA-GPASCFD 224
P+ + + R + +Y A RG + D A GP+ D
Sbjct: 113 LPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGPSDIPD 156
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 30 PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPS 88
L AAR G D V + + A KD GYTPLH AA G L+I +LL GAD +
Sbjct: 5 KLLEAARAGQDDEVRILMANGADVNA-KDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
L +AA G + VR+L++ GAD Y PLH AA +G +E+V +LL G
Sbjct: 5 KLLEAARAGQDDEVRILMANGADVNAKDKDGY------TPLHLAAREGHLEIVEVLLKAG 58
Query: 174 ADPLLASYAGHTPLSITSDETTRKL 198
AD G T I+ D L
Sbjct: 59 ADVNAQDKFGKTAFDISIDNGNEDL 83
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 64 PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
L EAA G D R+L+ GAD + G PLH AA +G +E+V +L
Sbjct: 5 KLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVL 54
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 14 GAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGW 73
GA+V + G TPLH AAR G+++ V L K +D G T + +G
Sbjct: 25 GADVNA---KDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAQDKFGKTAFDISIDNGN 80
Query: 74 LDIARLL 80
D+A +L
Sbjct: 81 EDLAEIL 87
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 152 RPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHL---ADVRG 208
+ L +AA G + VR+L++ GAD G+TPL + + E ++++ L ADV
Sbjct: 4 KKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 63
Query: 209 HE 210
+
Sbjct: 64 QD 65
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 81/198 (40%), Gaps = 28/198 (14%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
GET LH AAR DA LE S +DN G TPLH A S + ++L+ A
Sbjct: 25 GETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 83
Query: 87 PSDSAI-GGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRL 129
D+ + G PL AA M+ L LH AA V+ +
Sbjct: 84 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 143
Query: 130 LLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSI 189
LL GA+ + + + PL AA +G E ++LL + A+ + + P I
Sbjct: 144 LLKNGANKDMQN------NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 197
Query: 190 TSD----ETTRKLLQYHL 203
+ + R L +Y+L
Sbjct: 198 AQERMHHDIVRLLDEYNL 215
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 68/162 (41%), Gaps = 14/162 (8%)
Query: 58 DNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHD 117
D G T LH AA + D A+ LL AD + G PLH A + ++L +
Sbjct: 22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81
Query: 118 AAE------KGCVEMV---RLLLSYGADPLLASYAVYFL--SLPSRPLHDAAEKGCVEMV 166
A + G ++ RL + + L+ S+A L LH AA V+
Sbjct: 82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 141
Query: 167 RLLLSYGADPLLASYAGHTPLSITSDE---TTRKLLQYHLAD 205
+LL GA+ + + TPL + + E T K+L H A+
Sbjct: 142 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 183
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 81/198 (40%), Gaps = 28/198 (14%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
GET LH AAR DA LE S +DN G TPLH A S + ++L+ A
Sbjct: 58 GETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 116
Query: 87 PSDSAI-GGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRL 129
D+ + G PL AA M+ L LH AA V+ +
Sbjct: 117 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 176
Query: 130 LLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSI 189
LL GA+ + + + PL AA +G E ++LL + A+ + + P I
Sbjct: 177 LLKNGANKDMQN------NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 230
Query: 190 TSD----ETTRKLLQYHL 203
+ + R L +Y+L
Sbjct: 231 AQERMHHDIVRLLDEYNL 248
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 68/162 (41%), Gaps = 14/162 (8%)
Query: 58 DNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHD 117
D G T LH AA + D A+ LL AD + G PLH A + ++L +
Sbjct: 55 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 114
Query: 118 AAE------KGCVEMV---RLLLSYGADPLLASYAVYFL--SLPSRPLHDAAEKGCVEMV 166
A + G ++ RL + + L+ S+A L LH AA V+
Sbjct: 115 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 174
Query: 167 RLLLSYGADPLLASYAGHTPLSITSDE---TTRKLLQYHLAD 205
+LL GA+ + + TPL + + E T K+L H A+
Sbjct: 175 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 216
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 74/183 (40%), Gaps = 24/183 (13%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
GET LH AAR DA LE S +DN G TPLH A S + ++LL A
Sbjct: 22 GETALHLAARYSRSDAAKRLLEA-SADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRAT 80
Query: 87 PSDSAI-GGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRL 129
D+ + G PL AA M+ L LH AA V+ +
Sbjct: 81 DLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 140
Query: 130 LLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSI 189
LL GA+ + + + PL AA +G E ++LL + A+ + + P I
Sbjct: 141 LLKNGANKDMQN------NKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 194
Query: 190 TSD 192
+
Sbjct: 195 AQE 197
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 67/162 (41%), Gaps = 14/162 (8%)
Query: 58 DNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHD 117
D G T LH AA + D A+ LL AD G PLH A + ++L +
Sbjct: 19 DRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNR 78
Query: 118 AAE------KGCVEMV---RLLLSYGADPLLASYAVYFL--SLPSRPLHDAAEKGCVEMV 166
A + G ++ RL L + L+ S+A L LH AA V+
Sbjct: 79 ATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 138
Query: 167 RLLLSYGADPLLASYAGHTPLSITSDE---TTRKLLQYHLAD 205
+LL GA+ + + TPL + + E T K+L H A+
Sbjct: 139 VVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFAN 180
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 27/164 (16%)
Query: 65 LHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCV 124
L AA+ G ++ R LL GA P+ G RP+ V M+ G
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQ-------VMMM-----------GSA 57
Query: 125 EMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGH 184
+ LLL +GA+P A A +RP+HDAA +G ++ + +L GA + G
Sbjct: 58 RVAELLLLHGAEPNCADPATL-----TRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR 112
Query: 185 TPLSITSDETTRKLLQYHLA---DVRGHEAPKWDFA-GPASCFD 224
P+ + + R + +Y A RG + D A GP+ D
Sbjct: 113 LPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGPSDIPD 156
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 14 GAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGW 73
GA+V +WV TPL +A + A + L+ ++ D+AG PLH A G
Sbjct: 223 GADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLHHATILGH 280
Query: 74 LDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPL 115
+A L L GAD G PL A E ++V LL L
Sbjct: 281 TGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRL 322
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 14 GAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGW 73
GA+V +WV TPL +A + A + L+ ++ D+AG PLH A G
Sbjct: 223 GADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLHHATILGH 280
Query: 74 LDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPL 115
+A L L GAD G PL A E ++V LL L
Sbjct: 281 TGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRL 322
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 14 GAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGW 73
GA+V +WV TPL +A + A + L+ ++ D+AG PLH A G
Sbjct: 223 GADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLHHATILGH 280
Query: 74 LDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPL 115
+A L L GAD G PL A E ++V LL L
Sbjct: 281 TGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRL 322
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 74/183 (40%), Gaps = 24/183 (13%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
GET LH AAR DA LE S +DN G TPLH A S + ++L+ A
Sbjct: 57 GETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 115
Query: 87 PSDSAI-GGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRL 129
D+ + G PL AA M+ L LH AA V+ +
Sbjct: 116 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 175
Query: 130 LLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSI 189
LL GA+ + + + PL AA +G E ++LL + A+ + + P I
Sbjct: 176 LLKNGANKDMQN------NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 229
Query: 190 TSD 192
+
Sbjct: 230 AQE 232
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 68/162 (41%), Gaps = 14/162 (8%)
Query: 58 DNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHD 117
D G T LH AA + D A+ LL AD + G PLH A + ++L +
Sbjct: 54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 118 AAE------KGCVEMV---RLLLSYGADPLLASYAVYFL--SLPSRPLHDAAEKGCVEMV 166
A + G ++ RL + + L+ S+A L LH AA V+
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 173
Query: 167 RLLLSYGADPLLASYAGHTPLSITSDE---TTRKLLQYHLAD 205
+LL GA+ + + TPL + + E T K+L H A+
Sbjct: 174 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 215
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDN--AGYTPLHEAASHGWLDIARLLLMYG 84
G+TPL + GY + + LE HG D G TPL A+ +G +I + LL G
Sbjct: 101 GKTPLMWSIIFGYSEMSYFLLE---HGANVNDRNLEGETPLIVASKYGRSEIVKKLLELG 157
Query: 85 ADPSDSAIGGIRPLHDAAEKGCVEMVRLLP 114
AD S + G+ A G E++++
Sbjct: 158 ADISARDLTGLTAEASARIFGRQEVIKIFT 187
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGA 85
G T L A + + L K S+ KD +G TPL + G+ +++ LL +GA
Sbjct: 67 EGSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGA 125
Query: 86 DPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
+ +D + G PL A++ G E+V+ L
Sbjct: 126 NVNDRNLEGETPLIVASKYGRSEIVKKL 153
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 54 PAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
P+ ++ G T LH A G +I + L+ +G + + + G PLH AA V++ + L
Sbjct: 63 PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
Query: 114 PLHDAA 119
AA
Sbjct: 123 VESGAA 128
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 17/112 (15%)
Query: 48 EKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCV 107
E+ +HG K N L +++ G D+ + ++ DPS GI LH+A G
Sbjct: 25 ERIAHGMRVKFNP-LALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHT 83
Query: 108 EMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYA 143
E+V+ L PLH AA V++ + L+ GA +Y+
Sbjct: 84 EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYS 135
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 139 LASYAVYFLSLPSRP-------LHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPL 187
L +Y + PS P LH+A G E+V+ L+ +G + A G TPL
Sbjct: 52 LVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 54 PAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
P+ ++ G T LH A G +I + L+ +G + + + G PLH AA V++ + L
Sbjct: 63 PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 17/113 (15%)
Query: 48 EKFSHGPAPKDNA-GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGC 106
E+ +HG K N L +++ G D+ + ++ DPS GI LH+A G
Sbjct: 23 ERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGH 82
Query: 107 VEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYA 143
E+V+ L PLH AA V++ + L+ GA +Y+
Sbjct: 83 TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYS 135
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 139 LASYAVYFLSLPSRP-------LHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPL 187
L +Y + PS P LH+A G E+V+ L+ +G + A G TPL
Sbjct: 52 LVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 46/108 (42%), Gaps = 17/108 (15%)
Query: 28 ETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADP 87
+ PLH AA+ G + + CL+ G D AG T L+ A G DI L
Sbjct: 74 DNPLHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWACHGGHKDIVEXLFT----Q 128
Query: 88 SDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGA 135
+ + L D A LH AA KG ++V+LLL+ GA
Sbjct: 129 PNIELNQQNKLGDTA------------LHAAAWKGYADIVQLLLAKGA 164
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
G T L+ A G+ D V + + ++ G T LH AA G+ DI +LLL GA
Sbjct: 106 GSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR 165
Query: 87 PSDSAIGGIRPLHDAAEKGCVEMVR 111
I A C +++
Sbjct: 166 TDLRNIEKKLAFDXATNAACASLLK 190
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 67/193 (34%), Gaps = 33/193 (17%)
Query: 58 DNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---- 113
D+ +H AA G D R L+ G P+ G LH A + GCV+ + L
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76
Query: 114 ----------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAE---- 159
P+H A ++V L+ GA R +++
Sbjct: 77 EVHSLWHGQKPIHLAVXANKTDLVVALVE-GAKERGQXPESLLNECDEREVNEIGSHVKH 135
Query: 160 -KG------CV-------EMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLAD 205
KG CV E +++L+ GA P A TPL + R+ L
Sbjct: 136 CKGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXDT 195
Query: 206 VRGHEAPKWDFAG 218
V + + D+A
Sbjct: 196 VPSKSSLRLDYAN 208
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 24 KHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY 83
K+ G T LH AA++ V Y + + +D G TP+ AA G +++ L+
Sbjct: 276 KYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQ 335
Query: 84 GA 85
GA
Sbjct: 336 GA 337
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 71/170 (41%), Gaps = 21/170 (12%)
Query: 28 ETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNA-GYTPLHEAASHGWLDIARLLLMYGAD 86
E+PL AA+ + A++ L KF + A G T LH AA + L+ A +L+ A
Sbjct: 4 ESPLLLAAKENDVQALSKLL-KFEGCEVHQRGAMGETALHIAALYDNLEAAMVLM--EAA 60
Query: 87 PSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYF 146
P P+ +G LH A V +VR LL+ GA + F
Sbjct: 61 PELV----FEPMTSELYEGQT------ALHIAVINQNVNLVRALLARGASVSARATGSVF 110
Query: 147 LSLP-------SRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSI 189
P PL AA G E+VRLL+ +GAD G+T L I
Sbjct: 111 HYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 154 LHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPL 187
L+ AA G + +V LL YGADP +A+ +G P+
Sbjct: 287 LNIAARLGNISIVDALLDYGADPFIANKSGLRPV 320
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 57 KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPL 98
+D+ G T L+ AA G + I LL YGADP + G+RP+
Sbjct: 279 QDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPV 320
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 115 LHDAAEKGCVEMVRLLLSYGADPLLASYA 143
L+ AA G + +V LL YGADP +A+ +
Sbjct: 287 LNIAARLGNISIVDALLDYGADPFIANKS 315
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 72/183 (39%), Gaps = 24/183 (13%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
G T LH AA DA LE S +DN G TPLH A S + ++L+ A
Sbjct: 57 GATALHLAAAYSRSDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 115
Query: 87 PSDSAI-GGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRL 129
D+ + G PL AA M+ L LH AA V+ +
Sbjct: 116 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 175
Query: 130 LLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSI 189
LL GA+ + + + PL AA +G E ++LL + A+ + + P I
Sbjct: 176 LLKNGANKDMQN------NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 229
Query: 190 TSD 192
+
Sbjct: 230 AQE 232
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 14/162 (8%)
Query: 58 DNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHD 117
D G T LH AA++ D A+ LL AD + G PLH A + ++L +
Sbjct: 54 DRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 118 AAE------KGCVEMV---RLLLSYGADPLLASYAVYFL--SLPSRPLHDAAEKGCVEMV 166
A + G ++ RL + + L+ S+A L LH AA V+
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 173
Query: 167 RLLLSYGADPLLASYAGHTPLSITSDE---TTRKLLQYHLAD 205
+LL GA+ + + TPL + + E T K+L H A+
Sbjct: 174 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 215
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 64 PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
PLH+AA+ I ++LL G D S G L+ A + G + V+L
Sbjct: 65 PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLF 114
>pdb|3DGS|A Chain A, Changing The Determinants Of Protein Stability From
Covalent To Non- Covalent Interactions By In-Vitro
Evolution: A Structural And Energetic Analysis
pdb|3DGS|B Chain B, Changing The Determinants Of Protein Stability From
Covalent To Non- Covalent Interactions By In-Vitro
Evolution: A Structural And Energetic Analysis
Length = 227
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 121 KGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLAS 180
+G + + ++ G DP+ Y + + S+ ++DA G V + DPL+A
Sbjct: 146 QGALTVYTGTVTQGTDPVKTYYQ--YTPVSSKAMYDAYWNGKFRDVAFHSGFNEDPLVAE 203
Query: 181 YAGH 184
Y G
Sbjct: 204 YQGQ 207
>pdb|3SAO|A Chain A, The Siderocalin Ex-Fabp Functions Through Dual Ligand
Specificities
pdb|3SAO|B Chain B, The Siderocalin Ex-Fabp Functions Through Dual Ligand
Specificities
Length = 160
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 145 YFLSLPSRPLHDAAEKGCVEMVRLLLSY-GADPLLASYAGHTPLSITSDETTRK 197
Y ++L S AEKG ++MV +S+ G D L SYA +P ETT K
Sbjct: 13 YIVALASNTDFFLAEKGKMKMVMARISFLGEDELEVSYAAPSPKGCRKWETTFK 66
>pdb|4E4R|A Chain A, Eutd Phosphotransacetylase From Staphylococcus Aureus
Length = 331
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 162 CVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHE 210
VE + LS+G DP +A + T S SD+ T+ LA + E
Sbjct: 185 AVESAKSALSFGXDPKVAXLSFSTKGSAKSDDVTKVQEAVKLAQQKAEE 233
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 25/121 (20%)
Query: 25 HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP---KDNAGYTPLH---EAASHGWLDIAR 78
+ GE PL AA D V+Y LE H PA D+ G T LH + + +IA
Sbjct: 139 YFGELPLSLAACTKQWDVVSYLLEN-PHQPASLQATDSQGNTVLHALVXISDNSAENIAL 197
Query: 79 L------LLMYGADPSDSA-IGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLL 131
+ LL GA + + IR L D L PL AA++G +E+ R +L
Sbjct: 198 VTSXYDGLLQAGARLCPTVQLEDIRNLQD-----------LTPLKLAAKEGKIEIFRHIL 246
Query: 132 S 132
Sbjct: 247 Q 247
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 34 AARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIG 93
AA G ++ V +++ + P+ + G T LH A I L+ GA+ +
Sbjct: 28 AALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSH 86
Query: 94 GIRPLHDAAEKGCVEMVRLLPLHDAA 119
G PLH AA + L H AA
Sbjct: 87 GWTPLHCAASCNDTVICMALVQHGAA 112
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 22 INKHHGETPLHRAARLGYIDAVAYCLEKFSHGP 54
I+ H G TPL AA+ G I+ + L++ GP
Sbjct: 229 ISNHQGLTPLKLAAKEGKIEIFRHILQREFSGP 261
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 78/191 (40%), Gaps = 16/191 (8%)
Query: 14 GAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGW 73
GAE+ + + GET LH AAR DA L+ + + +DN G TPLH A +
Sbjct: 40 GAELNATM--DKTGETSLHLAARFARADAAKRLLDAGADANS-QDNTGRTPLHAAVAADA 96
Query: 74 LDIARLLLMYGADPSDSAI-GGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLS 132
+ + ++LL A ++ + G PL AA MV L DA + L
Sbjct: 97 MGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALH 156
Query: 133 YGADPLLASYAVYFLSL-----------PSRPLHDAAEKGCVEMVRLLLSYGADPLLASY 181
+ A + + AV L + PL AA +G E + LL A+ + +
Sbjct: 157 WAA-AVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDH 215
Query: 182 AGHTPLSITSD 192
P + S+
Sbjct: 216 MDRLPRDVASE 226
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 22 INKHHGETPLHRAARLGYIDAVAYCLEKFSHGP 54
I G TPL AA G I +AY L++ H P
Sbjct: 228 ITNRKGLTPLALAASSGKIGVLAYILQREIHEP 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,462,891
Number of Sequences: 62578
Number of extensions: 289879
Number of successful extensions: 1542
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 589
Number of HSP's gapped (non-prelim): 417
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)