RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5702
(235 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 95.5 bits (238), Expect = 3e-25
Identities = 51/122 (41%), Positives = 67/122 (54%), Gaps = 17/122 (13%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGA 85
G TPLH AA G+++ V LE + KDN G TPLH AA +G L+I +LLL GA
Sbjct: 6 DGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA 64
Query: 86 DPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRL 129
D + G PLH AA G +++V+LL PLH AA+ G +E+V+L
Sbjct: 65 DVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKL 124
Query: 130 LL 131
LL
Sbjct: 125 LL 126
Score = 94.0 bits (234), Expect = 2e-24
Identities = 52/130 (40%), Positives = 71/130 (54%), Gaps = 22/130 (16%)
Query: 57 KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL--- 113
+D G TPLH AAS+G L++ +LLL GAD + G PLH AA+ G +E+V+LL
Sbjct: 3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEK 62
Query: 114 -------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEK 160
PLH AA G +++V+LLL +GAD PLH AA+
Sbjct: 63 GADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRT------PLHLAAKN 116
Query: 161 GCVEMVRLLL 170
G +E+V+LLL
Sbjct: 117 GHLEVVKLLL 126
Score = 81.7 bits (202), Expect = 6e-20
Identities = 40/89 (44%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 25 HHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG 84
+ G TPLH AA+ G+++ V LEK + +D G TPLH AA +G LD+ +LLL +G
Sbjct: 38 NDGRTPLHLAAKNGHLEIVKLLLEKGAD-VNARDKDGNTPLHLAARNGNLDVVKLLLKHG 96
Query: 85 ADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
AD + G PLH AA+ G +E+V+LL
Sbjct: 97 ADVNARDKDGRTPLHLAAKNGHLEVVKLL 125
Score = 64.3 bits (157), Expect = 3e-13
Identities = 32/74 (43%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
PLH AA G +E+V+LLL GAD PLH AA+ G +E+V+LLL G
Sbjct: 10 PLHLAASNGHLEVVKLLLENGADVNAKDNDGRT------PLHLAAKNGHLEIVKLLLEKG 63
Query: 174 ADPLLASYAGHTPL 187
AD G+TPL
Sbjct: 64 ADVNARDKDGNTPL 77
Score = 56.2 bits (136), Expect = 3e-10
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 22 INKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLL 81
G TPLH AAR G +D V L+ + +D G TPLH AA +G L++ +LLL
Sbjct: 68 ARDKDGNTPLHLAARNGNLDVVKLLLKHGAD-VNARDKDGRTPLHLAAKNGHLEVVKLLL 126
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 76.1 bits (188), Expect = 3e-18
Identities = 39/114 (34%), Positives = 52/114 (45%), Gaps = 25/114 (21%)
Query: 65 LHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCV 124
LH AA +G L++ +LLL GAD + LH AA G +
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGD-------------------TDTALHLAARNGNL 41
Query: 125 EMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLL 178
E+V+LLL +GAD LH AA G +E+V+LLL +GAD L
Sbjct: 42 EIVKLLLEHGADVNAKDKDGN------TALHLAARNGNLEIVKLLLEHGADINL 89
Score = 72.7 bits (179), Expect = 8e-17
Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 31 LHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDS 90
LH AA+ G ++ V LE G T LH AA +G L+I +LLL +GAD +
Sbjct: 1 LHLAAKNGNLELVKLLLE---KGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAK 57
Query: 91 AIGGIRPLHDAAEKGCVEMVRLL 113
G LH AA G +E+V+LL
Sbjct: 58 DKDGNTALHLAARNGNLEIVKLL 80
Score = 70.0 bits (172), Expect = 7e-16
Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 115 LHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGA 174
LH AA+ G +E+V+LLL GAD L LH AA G +E+V+LLL +GA
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDT--------DTALHLAARNGNLEIVKLLLEHGA 52
Query: 175 DPLLASYAGHTPLSI 189
D G+T L +
Sbjct: 53 DVNAKDKDGNTALHL 67
Score = 60.0 bits (146), Expect = 4e-12
Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 22 INKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARL 79
+N +T LH AAR G ++ V LE HG KD G T LH AA +G L+I +L
Sbjct: 23 VNLGDTDTALHLAARNGNLEIVKLLLE---HGADVNAKDKDGNTALHLAARNGNLEIVKL 79
Query: 80 LLMYGADPS 88
LL +GAD +
Sbjct: 80 LLEHGADIN 88
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 76.6 bits (189), Expect = 3e-16
Identities = 56/216 (25%), Positives = 81/216 (37%), Gaps = 39/216 (18%)
Query: 29 TPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGW-----LDIARLLLMY 83
PL+ A ID V L+ TPLH ++ + +I +LLL Y
Sbjct: 37 LPLYLAKEARNIDVVKILLDN-GADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY 95
Query: 84 GADPSDSAIGGIRPLHDAAEK--GCVEMVRLL----------------PLHDAAEKGCV- 124
GA+ + GI PL A K +V L LH E +
Sbjct: 96 GANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKID 155
Query: 125 -EMVRLLLSYGADPLLASYAVYFLSLPSR----------PLHDAAEKGCVEMVRLLLSYG 173
++++LL+ G D + Y LS PLH A E V+ LL G
Sbjct: 156 LKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLG 215
Query: 174 ADPLLASYAGHTPLSI---TSDETTRKLLQYHLADV 206
A+P L + G TPL I +++ KLL + +
Sbjct: 216 ANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSI 251
Score = 56.2 bits (136), Expect = 2e-09
Identities = 40/169 (23%), Positives = 59/169 (34%), Gaps = 26/169 (15%)
Query: 45 YCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEK 104
Y + + PL+ A +D+ ++LL GAD + S PLH
Sbjct: 20 YIIME-DDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLH----- 73
Query: 105 GCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEK--GC 162
L E+V+LLL YGA+ + ++ PL A K
Sbjct: 74 -------YLSNIKYNLTDVKEIVKLLLEYGANV--NAPDNNGIT----PLLYAISKKSNS 120
Query: 163 VEMVRLLLSYGADPLLASYAGHTPL-----SITSDETTRKLLQYHLADV 206
+V LL GA+ + + G L S D KLL D+
Sbjct: 121 YSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI 169
Score = 52.0 bits (125), Expect = 8e-08
Identities = 32/122 (26%), Positives = 44/122 (36%), Gaps = 19/122 (15%)
Query: 27 GETPLHRAARLGYID------------------AVAYCLEKFSHGPAPKDNAGYTPLHEA 68
GE LH ID V Y L KD G+TPLH A
Sbjct: 141 GENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINI-KDVYGFTPLHYA 199
Query: 69 ASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVR 128
+ + + LL GA+P+ G PLH A E+ +LL + + K +E +
Sbjct: 200 VYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTIIETLL 259
Query: 129 LL 130
Sbjct: 260 YF 261
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 70.4 bits (172), Expect = 4e-14
Identities = 54/167 (32%), Positives = 72/167 (43%), Gaps = 27/167 (16%)
Query: 28 ETPLHRAARLGYIDAVAYCLE--KFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGA 85
E+ LH A G + AV L+ KF+ KD G TPLH A LDI +LL+ GA
Sbjct: 69 ESELHDAVEEGDVKAVEELLDLGKFADDVFYKD--GMTPLHLATILKKLDIMKLLIARGA 126
Query: 86 DPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRL 129
DP PLH A G ++ + LL PL A KG + + ++
Sbjct: 127 DPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKM 186
Query: 130 LLSYGADPLLASYAVYFLSLPS-RPLHDAAEKGCVEMVRLLLSYGAD 175
LL GA+ YF L A E +++VRL + GAD
Sbjct: 187 LLDSGANI------DYFGKNGCVAALCYAIENNKIDIVRLFIKRGAD 227
Score = 65.0 bits (158), Expect = 3e-12
Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 25/147 (17%)
Query: 61 GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIR-PLHDAAEKGCVEMVRLL------ 113
G +P+ A + +LL+ +GA P D I LHDA E+G V+ V L
Sbjct: 35 GISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVEEGDVKAVEELLDLGKF 93
Query: 114 -----------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGC 162
PLH A +++++LL++ GADP + + + PLH A G
Sbjct: 94 ADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPN------TDKFSPLHLAVMMGD 147
Query: 163 VEMVRLLLSYGADPLLASYAGHTPLSI 189
++ + LL+ + A + G TPL I
Sbjct: 148 IKGIELLIDHKACLDIEDCCGCTPLII 174
Score = 60.8 bits (147), Expect = 7e-11
Identities = 49/160 (30%), Positives = 71/160 (44%), Gaps = 26/160 (16%)
Query: 65 LHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------- 113
L +A G LDIAR LL G +P+ GI P+ A + E ++LL
Sbjct: 6 LCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKY 65
Query: 114 -----PLHDAAEKGCVEMVRLLLSYGADPLLASYAV-YFLSLPSRPLHDAAEKGCVEMVR 167
LHDA E+G V+ V LL L +A F PLH A +++++
Sbjct: 66 PDIESELHDAVEEGDVKAVEELL------DLGKFADDVFYKDGMTPLHLATILKKLDIMK 119
Query: 168 LLLSYGADPLLASYAGHTPLSI---TSDETTRKLLQYHLA 204
LL++ GADP + + +PL + D +LL H A
Sbjct: 120 LLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKA 159
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 66.8 bits (162), Expect = 3e-13
Identities = 55/166 (33%), Positives = 72/166 (43%), Gaps = 19/166 (11%)
Query: 57 KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLH 116
+D G PLH AAS G I +LLL GAD + G PLH AA L+
Sbjct: 69 RDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAA------------LN 116
Query: 117 DAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR--PLHDAAEKGCVEMVRLLLSYGA 174
+G +E+ +LLL GAD V L PLH AA G ++V LLL GA
Sbjct: 117 GNPPEGNIEVAKLLLEAGAD-----LDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGA 171
Query: 175 DPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPA 220
DP + G T L + +L++ L K++ G A
Sbjct: 172 DPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGVA 217
Score = 62.9 bits (152), Expect = 5e-12
Identities = 52/156 (33%), Positives = 66/156 (42%), Gaps = 26/156 (16%)
Query: 23 NKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHG-----WLDIA 77
G PLH AA G V L + KD G TPLH AA +G +++A
Sbjct: 69 RDLDGRLPLHSAASKGDDKIVKLLLASGAD-VNAKDADGDTPLHLAALNGNPPEGNIEVA 127
Query: 78 RLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADP 137
+LLL GAD + L D PLH AA G ++V LLL GADP
Sbjct: 128 KLLLEAGADLDVNN------LRDEDGN--------TPLHWAALNGDADIVELLLEAGADP 173
Query: 138 LLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
+ L AA+ G +E+V+LLL G
Sbjct: 174 NSRNSYGVT------ALDPAAKNGRIELVKLLLDKG 203
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 63.4 bits (154), Expect = 1e-11
Identities = 44/179 (24%), Positives = 69/179 (38%), Gaps = 33/179 (18%)
Query: 50 FSHGPAPK---DNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGC 106
S+G + G T LH A + + LLL YGA+ + PLH A +
Sbjct: 154 LSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYN 213
Query: 107 VEMVRLL----------------PLHDAAEKGCV--EMVRLLLSYGADPLLASYAVYFLS 148
+V +L PLH + C ++++LLL +G D SY + +
Sbjct: 214 KPIVHILLENGASTDARDKCGNTPLHISVGY-CKDYDILKLLLEHGVDVNAKSYILGLTA 272
Query: 149 LPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSIT----SDETTRKLLQYHL 203
L S + ++LLL YGAD + TPLS ++L ++
Sbjct: 273 LHS-SIKSE------RKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILISNI 324
Score = 41.0 bits (96), Expect = 3e-04
Identities = 45/207 (21%), Positives = 74/207 (35%), Gaps = 39/207 (18%)
Query: 8 DTVEDVGAEVRSWVINKHHGET-------PLHRAARLGYIDAVAYCLEKFSHGPAPKDNA 60
D E + + +++ + PLH+A +D V L + H D+
Sbjct: 11 DNYETILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTR-GHNVNQPDHR 69
Query: 61 GYTPLHEAASH-GWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLH--- 116
TPLH L + ++ S + + DA VE+ +++ +
Sbjct: 70 DLTPLHIICKEPNKLGMKEMIRSIN---KCSVFYTLVAIKDAFNNRNVEIFKIILTNRYK 126
Query: 117 ----------------DAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEK 160
D E E+ +LLLSYGAD + + LH A E
Sbjct: 127 NIQTIDLVYIDKKSKDDIIE---AEITKLLLSYGADINMKDR-----HKGNTALHYATEN 178
Query: 161 GCVEMVRLLLSYGADPLLASYAGHTPL 187
+ LLLSYGA+ + ++PL
Sbjct: 179 KDQRLTELLLSYGANVNIPDKTNNSPL 205
Score = 34.9 bits (80), Expect = 0.035
Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 21/155 (13%)
Query: 64 PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEK----GCVEMVR-------- 111
PLH+A LD+ + LL G + + + PLH ++ G EM+R
Sbjct: 40 PLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVF 99
Query: 112 --LLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLL 169
L+ + DA VE+ +++L+ + VY + +A E+ +LL
Sbjct: 100 YTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEA------EITKLL 153
Query: 170 LSYGAD-PLLASYAGHTPLSITSDETTRKLLQYHL 203
LSYGAD + + G+T L ++ ++L + L
Sbjct: 154 LSYGADINMKDRHKGNTALHYATENKDQRLTELLL 188
Score = 27.2 bits (60), Expect = 8.9
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 149 LPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLA 204
+P PLH A E +++V+ LL+ G + + TPL I E + ++ +
Sbjct: 36 IPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIR 91
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 48.0 bits (115), Expect = 5e-08
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 29 TPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLL 81
T LH+AA G ++ V Y LEK D G T LH AA +G L++ +LLL
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVD-INRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 45.7 bits (109), Expect = 3e-07
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 61 GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
G T LH+AA G L++ + LL G D + + G LH AAE G +E+++LL
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53
Score = 39.5 bits (93), Expect = 4e-05
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 111 RLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLL 170
LH AA G +E+V+ LL G D LH AAE G +E+++LLL
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGN------TALHIAAENGNLEVLKLLL 54
Score = 37.6 bits (88), Expect = 2e-04
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 152 RPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPL 187
LH AA G +E+V+ LL G D G+T L
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTAL 38
Score = 25.7 bits (57), Expect = 5.2
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 27 GETPLHRAARLGYIDAVAY 45
G T LH AA G ++ +
Sbjct: 34 GNTALHIAAENGNLEVLKL 52
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 50.7 bits (121), Expect = 2e-07
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 127 VRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTP 186
R+LL+ GADP Y PLH A G V++VR+LL +GADP L G TP
Sbjct: 98 ARILLTGGADPNCRDYD------GRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTP 151
Query: 187 LSITSDETTRKLLQ 200
L + + R+++Q
Sbjct: 152 LELAEENGFREVVQ 165
Score = 45.7 bits (108), Expect = 1e-05
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 54 PAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
P +D G TPLH A ++G + + R+LL +GADP+ G PL A E G E+V+LL
Sbjct: 108 PNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLL 167
Query: 114 PLH 116
H
Sbjct: 168 SRH 170
Score = 41.0 bits (96), Expect = 3e-04
Identities = 39/121 (32%), Positives = 54/121 (44%), Gaps = 14/121 (11%)
Query: 58 DNAGYTPLHEAASHGWLD--IARLL---LMYGADPSDSAIGGIRPL-HDAAEKGCVEMVR 111
+N TP H + +D +A +L L A D+ G R L A+ C +
Sbjct: 58 ENKDATPDHNLTTEEVIDPVVAHMLTVELCQLAASGDAV--GARILLTGGADPNCRDYDG 115
Query: 112 LLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLS 171
PLH A G V++VR+LL +GADP L PL A E G E+V+LL
Sbjct: 116 RTPLHIACANGHVQVVRVLLEFGADPTLLDKD------GKTPLELAEENGFREVVQLLSR 169
Query: 172 Y 172
+
Sbjct: 170 H 170
Score = 41.0 bits (96), Expect = 3e-04
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 25 HHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG 84
+ G TPLH A G++ V LE F P D G TPL A +G+ ++ +LL +
Sbjct: 113 YDGRTPLHIACANGHVQVVRVLLE-FGADPTLLDKDGKTPLELAEENGFREVVQLLSRHS 171
Query: 85 ADPSD 89
+
Sbjct: 172 QCHFE 176
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 48.4 bits (115), Expect = 9e-07
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 19/138 (13%)
Query: 14 GAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGW 73
GA+V I +G P+H A + + D + LEK ++ KDN G +PLH AA +G
Sbjct: 147 GADVN---IEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANV-KDNNGESPLHNAAEYGD 202
Query: 74 LDIARLLLMYGADPSDSAIGGIRPLHDAA--EKGCVEMV------------RLLPLHDAA 119
+LL+ +G + G PLH+A + +E++ PLH A
Sbjct: 203 YACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAI 262
Query: 120 EKGC-VEMVRLLLSYGAD 136
C ++++ +LL + AD
Sbjct: 263 NPPCDIDIIDILLYHKAD 280
Score = 47.7 bits (113), Expect = 2e-06
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 42/175 (24%)
Query: 57 KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL--- 113
KD T LH A G L+ ++L YGAD + G P+H A + ++++LL
Sbjct: 120 KDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEK 179
Query: 114 -------------PLHDAAEKGCVEMVRLLLSYGAD----------PL----LASYAVYF 146
PLH+AAE G ++LL+ +G PL + + +
Sbjct: 180 GAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIE 239
Query: 147 LSLPSR-----------PLHDAAEKGC-VEMVRLLLSYGADPLLASYAGHTPLSI 189
L + + PLH A C ++++ +LL + AD + G P+
Sbjct: 240 LLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDT 294
Score = 40.3 bits (94), Expect = 6e-04
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 32/140 (22%)
Query: 64 PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLP--------- 114
PL A G DI +LL+ G D S I P+ + +M++ +
Sbjct: 71 PLLTAIKIGAHDIIKLLIDNGVDTS------ILPIPCIEK----DMIKTILDCGIDVNIK 120
Query: 115 -------LHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVR 167
LH A +KG +E +++L YGAD + + P+H A + ++++
Sbjct: 121 DAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCY------PIHIAIKHNFFDIIK 174
Query: 168 LLLSYGADPLLASYAGHTPL 187
LLL GA + G +PL
Sbjct: 175 LLLEKGAYANVKDNNGESPL 194
Score = 37.3 bits (86), Expect = 0.005
Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 22/138 (15%)
Query: 63 TPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL--------- 113
TPL +A G I L + +GAD + PL A + G ++++LL
Sbjct: 37 TPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSI 96
Query: 114 -PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRP-LHDAAEKGCVEMVRLLLS 171
P+ + +M++ +L G D V + LH A +KG +E +++L
Sbjct: 97 LPIPCIEK----DMIKTILDCGID-------VNIKDAELKTFLHYAIKKGDLESIKMLFE 145
Query: 172 YGADPLLASYAGHTPLSI 189
YGAD + G P+ I
Sbjct: 146 YGADVNIEDDNGCYPIHI 163
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 47.0 bits (111), Expect = 3e-06
Identities = 63/238 (26%), Positives = 99/238 (41%), Gaps = 58/238 (24%)
Query: 12 DVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASH 71
D G V S K+ TPLH A++ + + L + K+ G TPL+ A +
Sbjct: 261 DAGFSVNSIDDCKN---TPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKN 317
Query: 72 GW-LDIARLLLMYGADPSDSAIGGIRPLHDAA--EKGCVEMVRLL--------------- 113
G+ + R L+M GAD + + I PLH A+ ++ ++ LL
Sbjct: 318 GYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKT 377
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLAS--------YAVY----FLSLP----------- 150
P+H AA + V ++ LL YGAD S +A+ ++S+
Sbjct: 378 PIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNS 437
Query: 151 -----SRPLHDAAEKGC-VEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYH 202
S PLH A +K C ++++ +LL GAD + PL I L+YH
Sbjct: 438 KNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIA--------LEYH 487
Score = 38.5 bits (89), Expect = 0.002
Identities = 41/144 (28%), Positives = 59/144 (40%), Gaps = 19/144 (13%)
Query: 57 KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRL---- 112
KD TP+H AA G + LLL YGAD + A+ + L A + ++ ++
Sbjct: 174 KDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDN 233
Query: 113 --------LPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCV- 163
L L A +E LL Y A + S + PLH A++ +
Sbjct: 234 RSNINKNDLSLLKAIRNEDLETSLLL--YDAGFSVNSIDDC----KNTPLHHASQAPSLS 287
Query: 164 EMVRLLLSYGADPLLASYAGHTPL 187
+V LL GAD + G TPL
Sbjct: 288 RLVPKLLERGADVNAKNIKGETPL 311
Score = 38.5 bits (89), Expect = 0.002
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 6/50 (12%)
Query: 126 MVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGAD 175
+ +LL GAD + + +Y ++ P+H AAE+G +MV LLLSYGAD
Sbjct: 160 IAEMLLEGGAD--VNAKDIYCIT----PIHYAAERGNAKMVNLLLSYGAD 203
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to
24 repeated units, and it mediates most of the
protein's binding activities. Repeats 13-24 are
especially active, with known sites of interaction for
the Na/K ATPase, Cl/HCO(3) anion exchanger,
voltage-gated sodium channel, clathrin heavy chain and
L1 family cell adhesion molecules. The ANK repeats are
found to form a contiguous spiral stack such that ion
transporters like the anion exchanger associate in a
large central cavity formed by the ANK repeat spiral,
while clathrin and cell adhesion molecules associate
with specific regions outside this cavity.
Length = 33
Score = 42.2 bits (100), Expect = 4e-06
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 61 GYTPLHEAASHGWLDIARLLLMYGADP 87
G TPLH AA +G L++ +LLL GAD
Sbjct: 2 GNTPLHLAARNGHLEVVKLLLEAGADV 28
Score = 39.5 bits (93), Expect = 3e-05
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADP 137
PLH AA G +E+V+LLL GAD
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADV 28
Score = 39.5 bits (93), Expect = 3e-05
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 153 PLHDAAEKGCVEMVRLLLSYGADP 176
PLH AA G +E+V+LLL GAD
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADV 28
Score = 31.8 bits (73), Expect = 0.017
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEK 49
G TPLH AAR G+++ V LE
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEA 24
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 46.6 bits (111), Expect = 5e-06
Identities = 58/210 (27%), Positives = 76/210 (36%), Gaps = 45/210 (21%)
Query: 27 GETPLHRAARLGYIDAVAYCL--EKFSH---GPAPKDNA--------GYTPLHEAASHGW 73
G+T LH A L Y+DAV L + GP N G T LH AA
Sbjct: 82 GDTLLH-AISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQN 140
Query: 74 LDIARLLLMYGADPSDSAIGG---IRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLL 130
+I +LLL GA A G D+ G PL+ AA G +V LL
Sbjct: 141 YEIVKLLLERGASVPARACGDFFVKSQGVDSFYHG------ESPLNAAACLGSPSIVALL 194
Query: 131 LSYGADPLLASYAVYFLSLPSRPLHDAA---------EKGCVEMVRLLLSYGADP----- 176
AD L A SL + LH E+ +M LS
Sbjct: 195 SEDPADILTA------DSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKE 248
Query: 177 --LLASYAGHTPLSITSDETTRKLLQYHLA 204
++ ++ G TPL + + E L + LA
Sbjct: 249 LEVILNHQGLTPLKLAAKEGRIVLFRLKLA 278
>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional.
Length = 300
Score = 45.0 bits (106), Expect = 1e-05
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 18/119 (15%)
Query: 73 WLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLS 132
+ DI +L GADP A E + PL A + + +LL+
Sbjct: 45 YTDIIDAILKLGADPE-------------APFPLSENSKTNPLIYAIDCDNDDAAKLLIR 91
Query: 133 YGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITS 191
YGAD + YA PL+ + GC++ + +LLSYGAD + + TP+ +
Sbjct: 92 YGAD--VNRYAEE---AKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELAL 145
Score = 34.2 bits (78), Expect = 0.046
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 22/123 (17%)
Query: 31 LHRAARLGYIDAVAYCLEKFSHGPAP---KDNAGYTPLHEAASHGWLDIARLLLMYGADP 87
L+ + + Y D + L+ + AP +N+ PL A D A+LL+ YGAD
Sbjct: 37 LYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV 96
Query: 88 SDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFL 147
+ A E ++ PL+ + GC++ + +LLSYGAD + +
Sbjct: 97 NRYA----------------EEAKITPLYISVLHGCLKCLEILLSYGAD---INIQTNDM 137
Query: 148 SLP 150
P
Sbjct: 138 VTP 140
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 43.9 bits (104), Expect = 3e-05
Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 29/128 (22%)
Query: 67 EAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEM 126
AS+ ++ R LL GAD + G PLH L LH ++EK ++
Sbjct: 20 LNASNVTVEEVRRLLAAGADVNFRGEYGKTPLH-------------LYLHYSSEK-VKDI 65
Query: 127 VRLLLSYGADPLLASYAVYFLSLPSR----PLHDAAEKGCVE-MVRLLLSYGADPLLASY 181
VRLLL GAD ++ P R PLH +++LL+ GAD
Sbjct: 66 VRLLLEAGAD----------VNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDK 115
Query: 182 AGHTPLSI 189
G TPL +
Sbjct: 116 VGRTPLHV 123
Score = 43.5 bits (103), Expect = 5e-05
Identities = 45/135 (33%), Positives = 59/135 (43%), Gaps = 25/135 (18%)
Query: 57 KDNAGYTPLHEAASHGWLD--IARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLP 114
KD G TPLH S ++ + RLLL GAD + + G+ PL LL
Sbjct: 113 KDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLA-----------VLLK 161
Query: 115 LHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAE--KGCVEMVRLLLSY 172
+A VE++RLL+ GAD F SL LH + K +VR L+
Sbjct: 162 SRNA----NVELLRLLIDAGADVYAVD--DRFRSL----LHHHLQSFKPRARIVRELIRA 211
Query: 173 GADPLLASYAGHTPL 187
G DP G+TPL
Sbjct: 212 GCDPAATDMLGNTPL 226
Score = 35.0 bits (81), Expect = 0.023
Identities = 41/167 (24%), Positives = 61/167 (36%), Gaps = 26/167 (15%)
Query: 26 HGETPLHRAARLGYIDA--VAYCLEKFSHGPAPKDNAGYTPLHEAA--SHGWLDIARLLL 81
+G TPL + + + ++ + D+ + LH I R L+
Sbjct: 151 YGMTPLAVLLKSRNANVELLRLLIDAGAD-VYAVDDRFRSLLHHHLQSFKPRARIVRELI 209
Query: 82 MYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLAS 141
G DP+ + + G PLH A + +LPL A + YG PL
Sbjct: 210 RAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGIS-----INARNRYGQTPLH-- 262
Query: 142 YAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLS 188
YA F + A R L++ GAD S G+TPLS
Sbjct: 263 YAAVFNN-------PRA-------CRRLIALGADINAVSSDGNTPLS 295
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 42.2 bits (99), Expect = 1e-04
Identities = 48/151 (31%), Positives = 61/151 (40%), Gaps = 19/151 (12%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
G TPLH AA GY D V L K + +D G T L A S I R+L + A
Sbjct: 558 GRTPLHIAASKGYEDCVLVLL-KHACNVHIRDANGNTALWNAISAKHHKIFRILYHF-AS 615
Query: 87 PSDSAIGGIRPLHDAAEKGCVEMVR-LLPL--------HD-------AAEKGCVEMVRLL 130
SD G L AA++ + ++ LL H A + V+MVRLL
Sbjct: 616 ISDPHAAG-DLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLL 674
Query: 131 LSYGADPLLASYAVYFLSLPSRPLHDAAEKG 161
+ GAD A+ F R L E G
Sbjct: 675 IMNGADVDKANTDDDFSPTELRELLQKRELG 705
Score = 39.1 bits (91), Expect = 0.002
Identities = 44/164 (26%), Positives = 66/164 (40%), Gaps = 39/164 (23%)
Query: 58 DNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---- 113
D+ G TPLH AAS G+ D +LL + + G L +A ++ R+L
Sbjct: 555 DSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFA 614
Query: 114 ----P------LHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR------PLHDA 157
P L AA++ + ++ LL G L++ S L A
Sbjct: 615 SISDPHAAGDLLCTAAKRNDLTAMKELLKQG------------LNVDSEDHQGATALQVA 662
Query: 158 AEKGCVEMVRLLLSYGADPLLAS-YAGHTPLSITSDETTRKLLQ 200
+ V+MVRLL+ GAD A+ +P R+LLQ
Sbjct: 663 MAEDHVDMVRLLIMNGADVDKANTDDDFSP------TELRELLQ 700
Score = 32.5 bits (74), Expect = 0.21
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 23 NKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLM 82
+ H L AA+ + A+ L K +D+ G T L A + +D+ RLL+M
Sbjct: 618 DPHAAGDLLCTAAKRNDLTAMKELL-KQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIM 676
Query: 83 YGAD 86
GAD
Sbjct: 677 NGAD 680
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to
24 repeated units, and it mediates most of the
protein's binding activities.
Length = 30
Score = 37.2 bits (87), Expect = 2e-04
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 61 GYTPLHEAASHGWLDIARLLLMYGADP 87
G TPLH AA +G L++ +LLL +GAD
Sbjct: 2 GNTPLHLAARNGNLELVKLLLEHGADI 28
Score = 34.2 bits (79), Expect = 0.003
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADP 137
PLH AA G +E+V+LLL +GAD
Sbjct: 5 PLHLAARNGNLELVKLLLEHGADI 28
Score = 34.2 bits (79), Expect = 0.003
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 153 PLHDAAEKGCVEMVRLLLSYGADP 176
PLH AA G +E+V+LLL +GAD
Sbjct: 5 PLHLAARNGNLELVKLLLEHGADI 28
Score = 29.9 bits (68), Expect = 0.093
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEK 49
G TPLH AAR G ++ V LE
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEH 24
Score = 26.1 bits (58), Expect = 1.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 94 GIRPLHDAAEKGCVEMVRLL 113
G PLH AA G +E+V+LL
Sbjct: 2 GNTPLHLAARNGNLELVKLL 21
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 37.7 bits (88), Expect = 2e-04
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 153 PLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSI 189
PLH AA+ G +E+V+ LL G D L G T L +
Sbjct: 19 PLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDL 55
Score = 33.9 bits (78), Expect = 0.005
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 58 DNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLH 99
D G TPLH AA +G L++ + LL G D + G+ L
Sbjct: 13 DGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALD 54
Score = 32.7 bits (75), Expect = 0.017
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLL 139
PLH AA+ G +E+V+ LL G D L
Sbjct: 19 PLHLAAKYGALELVQWLLKPGVDLNL 44
Score = 31.2 bits (71), Expect = 0.048
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEA 68
+G TPLH AA+ G ++ V + L+ +D+ G T L A
Sbjct: 15 NGNTPLHLAAKYGALELVQWLLKPGVDLNL-RDSDGLTALDLA 56
Score = 28.1 bits (63), Expect = 0.78
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 79 LLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
LL D + + G PLH AA+ G +E+V+ L
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWL 35
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 34.5 bits (80), Expect = 0.002
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADP 137
PLH AAE G +E+V+LLL GAD
Sbjct: 5 PLHLAAENGNLEVVKLLLDKGADI 28
Score = 34.5 bits (80), Expect = 0.002
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 153 PLHDAAEKGCVEMVRLLLSYGADP 176
PLH AAE G +E+V+LLL GAD
Sbjct: 5 PLHLAAENGNLEVVKLLLDKGADI 28
Score = 34.1 bits (79), Expect = 0.003
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 61 GYTPLHEAASHGWLDIARLLLMYGADPSD 89
G TPLH AA +G L++ +LLL GAD +
Sbjct: 2 GRTPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 26.8 bits (60), Expect = 1.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEK 49
G TPLH AA G ++ V L+K
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDK 24
Score = 25.2 bits (56), Expect = 3.5
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 97 PLHDAAEKGCVEMVRLL 113
PLH AAE G +E+V+LL
Sbjct: 5 PLHLAAENGNLEVVKLL 21
>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional.
Length = 494
Score = 34.3 bits (79), Expect = 0.051
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 36/157 (22%)
Query: 61 GY--TPL------HEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRL 112
GY TPL E S+ I +LLL +GAD + G+ P+ C
Sbjct: 67 GYIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIV------CF----- 115
Query: 113 LPLHDAAEKGCVEMVRLLLSYGAD-PLLASYAVYFLSLPSRPLHDAAEKGCV--EMVRLL 169
++++ C +M+R LLS G + + + Y L LH E V +++++L
Sbjct: 116 --IYNSNINNC-DMLRFLLSKGINVNDVKNSRGYNL------LHMYLESFSVKKDVIKIL 166
Query: 170 LSYGADPL-LASYAGHTPLSI----TSDETTRKLLQY 201
LS+G + S G TP++I D + K+++Y
Sbjct: 167 LSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKY 203
Score = 30.5 bits (69), Expect = 0.73
Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 30/131 (22%)
Query: 65 LHEAASHG---WLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEK 121
L+E + + LL G D ++ +G ++ L D
Sbjct: 4 LYEYILYSDTVDKNALEFLLRTGFDVNEEY------------RGNSILLLYLKRKDVK-- 49
Query: 122 GCVEMVRLLLSYGADPLLASYAVYFLS-----LPSRPLHDAAEKGCVEMVRLLLSYGADP 176
+++V+LL+ GAD +Y Y + L +R + K ++V+LLL +GAD
Sbjct: 50 --IKIVKLLIDNGAD---VNYKGYIETPLCAVLRNREITSNKIK---KIVKLLLKFGADI 101
Query: 177 LLASYAGHTPL 187
L ++ G +P+
Sbjct: 102 NLKTFNGVSPI 112
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 32.3 bits (73), Expect = 0.19
Identities = 36/167 (21%), Positives = 62/167 (37%), Gaps = 26/167 (15%)
Query: 52 HGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLH--DAAEKGCVEM 109
+ P D+ G PLH A+ I +LL +GADP+ PL+ + +E
Sbjct: 63 YSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIER 122
Query: 110 VRLLPLHDAAEKGCVEMVRLLLSYGADPLLASY--------AVYFLSLPSRPL------- 154
+ LL + A V+ G PLLA + + +R +
Sbjct: 123 INLLVQYGAKINNSVD------EEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNH 176
Query: 155 ---HDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKL 198
H ++ + ++ G P + G+TPL I +T + +
Sbjct: 177 IHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNV 223
Score = 31.2 bits (70), Expect = 0.40
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 153 PLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTP---LSITSDETTRK---LLQY 201
PLH A++ +V +LL++GADP TP LS T DE + L+QY
Sbjct: 75 PLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQY 129
>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional.
Length = 284
Score = 31.9 bits (72), Expect = 0.19
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 30/129 (23%)
Query: 64 PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGC 123
PLH+AA+ I ++LL G D S G L+ A + G ++ V+L
Sbjct: 64 PLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLF---------- 113
Query: 124 VEMVRLLLSYGADPLLASY-----------AVYFLS-LPS--------RPLHDAAEKGCV 163
V+ L+ YG S+ YFLS +PS +H + G V
Sbjct: 114 VKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHV 173
Query: 164 EMVRLLLSY 172
+M+ LLL Y
Sbjct: 174 DMMILLLDY 182
>gnl|CDD|188598 TIGR04083, rSAM_pep_methan, putative peptide-modifying radical SAM
enzyme, Mhun_1560 family. Members of this family are
radical SAM enzymes, homologous to a variety of other
peptide-modifying radical SAM, and found primarily in
methanogenic archaea.
Length = 376
Score = 32.0 bits (73), Expect = 0.27
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 20/101 (19%)
Query: 133 YGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD 192
+G +PLLA Y +LP LLS G L +A T L + +
Sbjct: 52 HGGEPLLAGADFYRQALP------------------LLSEGLAHLKPEFAMQTNLWLMTP 93
Query: 193 ETTRKLLQYHLADVRGHEAPKW--DFAGPASCFDKQMVGYE 231
E +Y++ + P+ D+ + K M GYE
Sbjct: 94 ELAEIFAEYNVPIGSSIDGPEEINDYQRGEGYYQKTMKGYE 134
>gnl|CDD|220597 pfam10139, Virul_Fac, Putative bacterial virulence factor. Members
of this family of prokaryotic proteins include various
putative virulence factor effector proteins. Their exact
function is, as yet, unknown.
Length = 852
Score = 31.2 bits (71), Expect = 0.44
Identities = 21/79 (26%), Positives = 28/79 (35%), Gaps = 8/79 (10%)
Query: 10 VEDVGAEVRSWVINKHHGETPLHRAARL-GYIDAVAYCLEKFSHGPAPKDNAGYTPLHEA 68
V+ +G + WV + GETP RA R G I A+ + T
Sbjct: 388 VKSLGKALDYWV-KQTQGETPQQRARRKPGLIWAITPFDMRIGEKL------NLTGDSLR 440
Query: 69 ASHGWLDIARLLLMYGADP 87
G A LL +G D
Sbjct: 441 FEWGARMHATLLERFGKDD 459
>gnl|CDD|165157 PHA02795, PHA02795, ankyrin-like protein; Provisional.
Length = 437
Score = 30.0 bits (67), Expect = 1.1
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIAR 78
G T L+RA GYID V++ LE ++ A N GYT L A G + IAR
Sbjct: 221 GRTLLYRAIYAGYIDLVSWLLENGANVNAVMSN-GYTCLDVAVDRGSV-IAR 270
>gnl|CDD|233749 TIGR02150, IPP_isom_1, isopentenyl-diphosphate delta-isomerase,
type 1. This model represents type 1 of two
non-homologous families of the enzyme
isopentenyl-diphosphate delta-isomerase (IPP
isomerase). IPP is an essential building block for many
compounds, including enzyme cofactors, sterols, and
prenyl groups. This inzyme interconverts isopentenyl
diphosphate and dimethylallyl diphosphate [Biosynthesis
of cofactors, prosthetic groups, and carriers, Other].
Length = 158
Score = 27.7 bits (62), Expect = 3.8
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 23 NKHHGETPLHRA 34
H ETPLHRA
Sbjct: 18 EVHLQETPLHRA 29
>gnl|CDD|222094 pfam13387, DUF4105, Domain of unknown function (DUF4105). This is
a family of uncharacterized bacterial proteins. There is
a highly conserved histidine residue and a
well-conserved NCT motif.
Length = 172
Score = 27.2 bits (61), Expect = 5.1
Identities = 16/57 (28%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 163 VEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPK--WDFA 217
+ +V L S G AS GHT L D +L Y A R P
Sbjct: 16 LRIVDLTASPGLGEP-ASMFGHTLLRFFKDGRLDLVLNYG-AFDRKGNGPNFALKGL 70
>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional.
Length = 169
Score = 26.9 bits (59), Expect = 6.4
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 18/95 (18%)
Query: 46 CLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKG 105
CLE+ A K++ G HEAA G DI + D + DA +
Sbjct: 9 CLEEMI---AEKNSEGENFFHEAARCGCFDIIARFTPF--IRGDCHAAALNATDDAGQM- 62
Query: 106 CVEMVRLLPLHDAAEKG----CVEMVRLLLSYGAD 136
C+ H AAEK E++ L+ GAD
Sbjct: 63 CI--------HIAAEKHEAQLAAEIIDHLIELGAD 89
>gnl|CDD|111994 pfam03158, DUF249, Multigene family 530 protein. Members of this
family are multigene family 530 proteins from African
swine fever viruses. These proteins may be involved in
promoting survival of infected macrophages.
Length = 192
Score = 26.9 bits (60), Expect = 7.4
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 115 LHDAAEKGCVEMVRLLLSYGA--DPLLASYAVYF 146
L AA KG + V L YG +P++ S AV +
Sbjct: 147 LEKAAAKGLLHFVLETLKYGGNVNPIVLSQAVKY 180
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.421
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,133,138
Number of extensions: 1148732
Number of successful extensions: 1170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1039
Number of HSP's successfully gapped: 101
Length of query: 235
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 141
Effective length of database: 6,768,326
Effective search space: 954333966
Effective search space used: 954333966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)