RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5702
(235 letters)
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 148 bits (377), Expect = 4e-44
Identities = 53/201 (26%), Positives = 72/201 (35%), Gaps = 31/201 (15%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMY 83
+PLH A G++ V L HG +TPL A G D LLL +
Sbjct: 91 DHVSPLHEACLGGHLSCVKILL---KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH 147
Query: 84 GADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMV 127
GA P+H+AA +G VE V L PL+ A E V
Sbjct: 148 GASV-QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACV 206
Query: 128 RLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPL 187
+ LL GAD PLH E+ LL+ +GAD + G P+
Sbjct: 207 KKLLESGADVNQGKGQ-------DSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPV 259
Query: 188 SITSDE--TTRKLLQYHLADV 206
+ E + L+ A +
Sbjct: 260 ELVPPESPLAQLFLEREGASL 280
Score = 146 bits (371), Expect = 3e-43
Identities = 54/224 (24%), Positives = 83/224 (37%), Gaps = 41/224 (18%)
Query: 8 DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGY 62
G+ + S + G P G S+ + +
Sbjct: 9 HHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLL--------SNPLMGDAVSDW 60
Query: 63 TPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL--------- 113
+P+HEAA HG R L+ G + + PLH+A G + V++L
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 114 -------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMV 166
PL +A G + V LLL +GA S + P+H+AA +G VE V
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL-------ASPIHEAARRGHVECV 173
Query: 167 RLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
L++YG + TPL + + +KLL+ ADV
Sbjct: 174 NSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE-SGADV 216
Score = 95.3 bits (238), Expect = 1e-23
Identities = 38/157 (24%), Positives = 58/157 (36%), Gaps = 25/157 (15%)
Query: 68 AASHGWLDIARLLLMYGA-----DPSDSAIGGIRPLHDAAEKGCVEMVRLL--------- 113
+SH + L+ G+ D + G +P G + L
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWS 61
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
P+H+AA G +R L+S G + + PLH+A G + V++LL +G
Sbjct: 62 PMHEAAIHGHQLSLRNLISQGWAVNIITADHV------SPLHEACLGGHLSCVKILLKHG 115
Query: 174 ADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
A + HTPL + LLQ H A V
Sbjct: 116 AQVNGVTADWHTPLFNACVSGSWDCVNLLLQ-HGASV 151
Score = 82.9 bits (206), Expect = 4e-19
Identities = 24/119 (20%), Positives = 36/119 (30%), Gaps = 24/119 (20%)
Query: 22 INKH--HGETPLHRAARLGYIDAVAYCLEKFSHGPAP-KDNAGYTPLHEAASHGWLDIAR 78
I+ H TPL+ A V L G + +PLH ++A
Sbjct: 183 IDHKISHLGTPLYLACENQQRACVKKLL---ESGADVNQGKGQDSPLHAVVRTASEELAC 239
Query: 79 LLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADP 137
LL+ +GAD G RP+ + + + L GA
Sbjct: 240 LLMDFGADTQAKNAEGKRPVELVPPESPLAQL------------------FLEREGASL 280
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 147 bits (373), Expect = 4e-44
Identities = 55/212 (25%), Positives = 80/212 (37%), Gaps = 39/212 (18%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEKF-SHGPAP--KDNAGYTPLHEAASHGWLDIARLLLM 82
G++ LH A + + ++N TPLH A +IA LL
Sbjct: 7 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 66
Query: 83 YGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------------PLHDAAE 120
G DP G PLH A E+GC+ V +L LH A+
Sbjct: 67 AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 126
Query: 121 KGCVEMVRLLLSYGADPLLASYAVYFLSLPSR--PLHDAAEKGCVEMVRLLLSYGADPLL 178
G + +V LL+S GAD V + LH A + ++V LLL GAD
Sbjct: 127 HGYLGIVELLVSLGAD-------VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 179
Query: 179 ASYAGHTPLSITSD----ETTRKLLQYHLADV 206
+Y G++P +T ++L Q +
Sbjct: 180 VTYQGYSPYQLTWGRPSTRIQQQLGQ-LTLEN 210
Score = 143 bits (363), Expect = 1e-42
Identities = 45/199 (22%), Positives = 65/199 (32%), Gaps = 36/199 (18%)
Query: 22 INK--HHGETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNAGYTPLHEAASHGWLDIA 77
+N + +TPLH A + L G P +D G TPLH A G L
Sbjct: 38 LNFQNNLQQTPLHLAVITNQPEIAEALL---GAGCDPELRDFRGNTPLHLACEQGCLASV 94
Query: 78 RLLLMYGADPSDSAI------GGIRPLHDAAEKGCVEMVRLL-----------------P 114
+L P +I G LH A+ G + +V LL
Sbjct: 95 GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA 154
Query: 115 LHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGA 174
LH A + ++V LLL GAD +Y Y P + + + L
Sbjct: 155 LHLAVDLQNPDLVSLLLKCGADVNRVTYQGY------SPYQLTWGRPSTRIQQQLGQLTL 208
Query: 175 DPLLASYAGHTPLSITSDE 193
+ L S ++
Sbjct: 209 ENLQMLPESEDEESYDTES 227
Score = 84.1 bits (209), Expect = 6e-20
Identities = 30/145 (20%), Positives = 43/145 (29%), Gaps = 31/145 (21%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAP---KDNA-GYTPLHEAASHGWLDIARLLL 81
+G T LH A+ GY+ V + S G A ++ G T LH A D+ LLL
Sbjct: 116 NGHTCLHLASIHGYLGIVELLV---SLG-ADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 171
Query: 82 MYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLAS 141
GAD + +G P + + + L + L
Sbjct: 172 KCGADV-----------NRVTYQGYS------PYQLTWGRPSTRIQQQLGQLTLENLQM- 213
Query: 142 YAVYFLSLPSRPLHDAAEKGCVEMV 166
L E E
Sbjct: 214 -----LPESEDEESYDTESEFTEFT 233
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 146 bits (372), Expect = 1e-43
Identities = 54/206 (26%), Positives = 73/206 (35%), Gaps = 32/206 (15%)
Query: 22 INK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIA 77
+N +PLH A G++ V L HG +TPL A G D
Sbjct: 29 VNIITADHVSPLHEACLGGHLSCVKILL---KHGAQVNGVTADWHTPLFNACVSGSWDCV 85
Query: 78 RLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEK 121
LLL +GA P+H+AA +G VE V L PL+ A E
Sbjct: 86 NLLLQHGASV-QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACEN 144
Query: 122 GCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASY 181
V+ LL GAD PLH A E+ LL+ +GAD +
Sbjct: 145 QQRACVKKLLESGADVNQGKGQ-------DSPLHAVARTASEELACLLMDFGADTQAKNA 197
Query: 182 AGHTPLSITSDET-TRKLLQYHLADV 206
G P+ + E+ +L
Sbjct: 198 EGKRPVELVPPESPLAQLFLEREGPP 223
Score = 145 bits (368), Expect = 5e-43
Identities = 53/207 (25%), Positives = 78/207 (37%), Gaps = 44/207 (21%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMYG 84
+P+H AA G+ ++ + S G A +PLHEA G L ++LL +G
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLI---SQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG 59
Query: 85 ADPSDSAIGGIRPLHDAAEKGCVEMVRLL---------------PLHDAAEKGCVEMVRL 129
A + PL +A G + V LL P+H+AA +G VE V
Sbjct: 60 AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNS 119
Query: 130 LLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGAD---------PL-LA 179
L++YG + + PL+ A E V+ LL GAD PL
Sbjct: 120 LIAYGGNIDHKISHLG------TPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAV 173
Query: 180 SYAGHTPLSITSDETTRKLLQYHLADV 206
+ E L+ + AD
Sbjct: 174 ARTASE-------ELACLLMDFG-ADT 192
Score = 142 bits (360), Expect = 7e-42
Identities = 44/200 (22%), Positives = 67/200 (33%), Gaps = 33/200 (16%)
Query: 22 INK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP-KDNAGYTPLHEAASHGWLDIAR 78
+N TPL A G D V L HG + ++ +P+HEAA G ++
Sbjct: 62 VNGVTADWHTPLFNACVSGSWDCVNLLL---QHGASVQPESDLASPIHEAARRGHVECVN 118
Query: 79 LLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---------------PLHDAAEKGC 123
L+ YG + PL+ A E V+ L PLH A
Sbjct: 119 SLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVARTAS 178
Query: 124 VEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAG 183
E+ LL+ +GAD + RP+ + + +L L P L
Sbjct: 179 EELACLLMDFGADTQAKNAEGK------RPVELVPPES--PLAQLFLEREGPPSLMQLCR 230
Query: 184 HTPLSITSD----ETTRKLL 199
+ T+ +L
Sbjct: 231 LRIRKCFGIQQHHKITKLVL 250
Score = 132 bits (335), Expect = 4e-38
Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 28/167 (16%)
Query: 60 AGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------ 113
+ ++P+HEAA HG R L+ G + + PLH+A G + V++L
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 114 ----------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCV 163
PL +A G + V LLL +GA S + P+H+AA +G V
Sbjct: 62 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL-------ASPIHEAARRGHV 114
Query: 164 EMVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
E V L++YG + TPL + + +KLL+ ADV
Sbjct: 115 ECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG-ADV 160
Score = 105 bits (265), Expect = 6e-28
Identities = 28/150 (18%), Positives = 44/150 (29%), Gaps = 29/150 (19%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAP-KDNAGYTPLHEAASHGWLDIARLLLMYG 84
H TPL+ A V L G + +PLH A ++A LL+ +G
Sbjct: 133 HLGTPLYLACENQQRACVKKLL---ESGADVNQGKGQDSPLHAVARTASEELACLLMDFG 189
Query: 85 ADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAV 144
AD G RP+ + + +L L P L
Sbjct: 190 ADTQAKNAEGKRPVELVPPES-------------------PLAQLFLEREGPPSLMQLCR 230
Query: 145 YFLSLPSRPLHDAAEKGCVEMVRLLLSYGA 174
R + ++ +L+L
Sbjct: 231 L------RIRKCFGIQQHHKITKLVLPEDL 254
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 150 bits (381), Expect = 2e-43
Identities = 65/226 (28%), Positives = 97/226 (42%), Gaps = 42/226 (18%)
Query: 8 DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNA 60
E + A N +G TPLH A +D V L G +P
Sbjct: 160 RVAELLLERDAH-----PNAAGKNGLTPLHVAVHHNNLDIVKLLL---PRGGSPHSPAWN 211
Query: 61 GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------- 113
GYTPLH AA +++AR LL YG + ++ G+ PLH AA++G EMV LL
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271
Query: 114 ---------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVE 164
PLH A++G V + +L+ +G + Y PLH A+ G ++
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY------TPLHVASHYGNIK 325
Query: 165 MVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
+V+ LL + AD + G++PL + + LL+ A
Sbjct: 326 LVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG-ASP 370
Score = 149 bits (380), Expect = 4e-43
Identities = 65/203 (32%), Positives = 88/203 (43%), Gaps = 32/203 (15%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMY 83
+TPLH AAR+G+ + V L + P AG+TPLH AA G ++ LL
Sbjct: 79 DDQTPLHCAARIGHTNMVKLLL---ENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135
Query: 84 GADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMV 127
A + G PLH AA+ G V + LL PLH A +++V
Sbjct: 136 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 195
Query: 128 RLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPL 187
+LLL G P ++ Y PLH AA++ VE+ R LL YG S G TPL
Sbjct: 196 KLLLPRGGSPHSPAWNGY------TPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPL 249
Query: 188 SITSD----ETTRKLLQYHLADV 206
+ + E LL A+
Sbjct: 250 HLAAQEGHAEMVALLLSKQ-ANG 271
Score = 144 bits (367), Expect = 3e-41
Identities = 60/201 (29%), Positives = 92/201 (45%), Gaps = 30/201 (14%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMY 83
+G TPLH AA+ ++ L +G + + G TPLH AA G ++ LLL
Sbjct: 211 NGYTPLHIAAKQNQVEVARSLL---QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK 267
Query: 84 GADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMV 127
A+ + G+ PLH A++G V + +L PLH A+ G +++V
Sbjct: 268 QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV 327
Query: 128 RLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPL 187
+ LL + AD + Y PLH AA++G ++V LLL GA P S G TPL
Sbjct: 328 KFLLQHQADVNAKTKLGYS------PLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPL 381
Query: 188 SITSDE---TTRKLLQYHLAD 205
+I + +L+ +
Sbjct: 382 AIAKRLGYISVTDVLKVVTDE 402
Score = 144 bits (366), Expect = 4e-41
Identities = 64/209 (30%), Positives = 83/209 (39%), Gaps = 34/209 (16%)
Query: 22 INK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIA 77
G TPLH A+ +G++ V L G +P + TPLH AA G ++A
Sbjct: 7 GGGGGESGLTPLHVASFMGHLPIVKNLL---QRGASPNVSNVKVETPLHMAARAGHTEVA 63
Query: 78 RLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEK 121
+ LL A + A PLH AA G MV+LL PLH AA +
Sbjct: 64 KYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE 123
Query: 122 GCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASY 181
G VE V LL A + + PLH AA+ G V + LLL A P A
Sbjct: 124 GHVETVLALLEKEASQACMTKKGF------TPLHVAAKYGKVRVAELLLERDAHPNAAGK 177
Query: 182 AGHTPLSITSD----ETTRKLLQYHLADV 206
G TPL + + + LL
Sbjct: 178 NGLTPLHVAVHHNNLDIVKLLLP-RGGSP 205
Score = 130 bits (329), Expect = 8e-36
Identities = 57/217 (26%), Positives = 87/217 (40%), Gaps = 47/217 (21%)
Query: 22 INK--HHGETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNAGYTPLHEAASHGWLDIA 77
N G TPLH AA+ G+ + VA L S + +G TPLH A G + +A
Sbjct: 238 ANAESVQGVTPLHLAAQEGHAEMVALLL---SKQANGNLGNKSGLTPLHLVAQEGHVPVA 294
Query: 78 RLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEK 121
+L+ +G + G PLH A+ G +++V+ L PLH AA++
Sbjct: 295 DVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQ 354
Query: 122 GCVEMVRLLLSYGADPLLASYAVYFLSLPSR----PLHDAAEKGCVEMVRLL---LSYGA 174
G ++V LLL GA P + S PL A G + + +L +
Sbjct: 355 GHTDIVTLLLKNGASP----------NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETS 404
Query: 175 DPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEA 211
L++ + ET ++L D G E
Sbjct: 405 FVLVSDKHRMSFP-----ETVDEILD-VSEDE-GEEL 434
Score = 93.7 bits (234), Expect = 2e-22
Identities = 46/147 (31%), Positives = 61/147 (41%), Gaps = 35/147 (23%)
Query: 84 GADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMV 127
G G+ PLH A+ G + +V+ L PLH AA G E+
Sbjct: 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVA 63
Query: 128 RLLLSYGADPLLASYAVYFLSLPSR----PLHDAAEKGCVEMVRLLLSYGADPLLASYAG 183
+ LL A + ++ PLH AA G MV+LLL A+P LA+ AG
Sbjct: 64 KYLLQNKAKV----------NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAG 113
Query: 184 HTPLSITSD----ETTRKLLQYHLADV 206
HTPL I + ET LL+ A
Sbjct: 114 HTPLHIAAREGHVETVLALLEKE-ASQ 139
Score = 51.0 bits (123), Expect = 9e-08
Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 32/96 (33%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARL---- 79
G +PLH+AA+ G+ D V L +G +P + G TPL A G++ + +
Sbjct: 343 LGYSPLHQAAQQGHTDIVTLLL---KNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVV 399
Query: 80 -----------------------LLMYGADPSDSAI 92
+L D + I
Sbjct: 400 TDETSFVLVSDKHRMSFPETVDEILDVSEDEGEELI 435
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 144 bits (365), Expect = 7e-43
Identities = 36/197 (18%), Positives = 67/197 (34%), Gaps = 23/197 (11%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPK-DNAGYTPLHEAASHGWLDIARLLLMYGA 85
G+ L R + + +HG K + L +++ G D+ + ++
Sbjct: 5 GQVSLPPGKRTNLRKTGSERI---AHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVD 61
Query: 86 DPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRL 129
DPS GI LH+A G E+V+ L PLH AA V++ +
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKF 121
Query: 130 LLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSI 189
L+ GA +Y+ + + E+G + + L + + L
Sbjct: 122 LVESGAAVFAMTYSDMQTAA---DKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWD 178
Query: 190 TSDETTRKLLQYHLADV 206
+ +L +
Sbjct: 179 YEPQNDDELPMKEGDCM 195
Score = 112 bits (283), Expect = 8e-31
Identities = 28/171 (16%), Positives = 56/171 (32%), Gaps = 29/171 (16%)
Query: 58 DNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---- 113
+ G L + +G + + L D++ +G ++V+ +
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLA-LLLDSSLEGEFDLVQRIIYEV 60
Query: 114 ------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKG 161
LH+A G E+V+ L+ +G + A + PLH AA
Sbjct: 61 DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGW------TPLHCAASCN 114
Query: 162 CVEMVRLLLSYGADPLLASYAGH---TPLSITSDET---TRKLLQYHLADV 206
V++ + L+ GA +Y+ +E + L +
Sbjct: 115 NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM 165
Score = 94.6 bits (236), Expect = 7e-24
Identities = 36/212 (16%), Positives = 63/212 (29%), Gaps = 54/212 (25%)
Query: 8 DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPA---PKDN 59
D V+ + + G T LH A G+ + V + + G D+
Sbjct: 51 DLVQRIIYEVDD-----PSLPNDEGITALHNAVCAGHTEIVKFLV---QFG-VNVNAADS 101
Query: 60 AGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAA 119
G+TPLH AAS + + + L+ GA +M +
Sbjct: 102 DGWTPLHCAASCNNVQVCKFLVESGAAVF--------------AMTYSDMQTAADKCEEM 147
Query: 120 EKGCVEMVRLLLSYGADP-LLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLL 178
E+G + + L ++ +Y L D + E L + G +
Sbjct: 148 EEGYTQCSQFLYGVQEKMGIMNKGVIY-------ALWDYEPQNDDE---LPMKEGDCMTI 197
Query: 179 ASYAGHTPLSITSDETTRKLLQYHLADVRGHE 210
DE ++ A + E
Sbjct: 198 IHREDE-------DEI-----EWWWARLNDKE 217
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 142 bits (360), Expect = 8e-43
Identities = 40/188 (21%), Positives = 63/188 (33%), Gaps = 41/188 (21%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAP---KDNAGYTPLHEAASHGWLDIARLLLM 82
+ R G AV L + D+ G++PLH A G + +L+M
Sbjct: 4 EFMDDIFTQCREGNAVAVRLWL---DNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM 60
Query: 83 YGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEM 126
GA + G PLH AA G ++V+ L PLH A G ++
Sbjct: 61 RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQV 120
Query: 127 VRLLLSYGADPLLASYAVYFLSLPSR----PLHDAAEKGCVEMVRLLLSYGAD----PL- 177
L++ GA S+ ++ P+ A + G + P
Sbjct: 121 AEDLVANGALV----------SICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYK 170
Query: 178 LASYAGHT 185
+ G T
Sbjct: 171 DTFWKGTT 178
Score = 120 bits (303), Expect = 3e-34
Identities = 36/169 (21%), Positives = 56/169 (33%), Gaps = 26/169 (15%)
Query: 58 DNAGYTPLHEAASHGWLDIARLLLMYGA-DPSDSAIGGIRPLHDAAEKGCVEMVRLL--- 113
+ G RL L D + G PLH A +G +V +L
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 114 -------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEK 160
PLH AA G ++V+ LL Y AD + PLH A
Sbjct: 62 GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN------VPLHYACFW 115
Query: 161 GCVEMVRLLLSYGADPLLASYAGHTPLSITSDET---TRKLLQYHLADV 206
G ++ L++ GA + + G P+ R+ + ++
Sbjct: 116 GQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL 164
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 142 bits (362), Expect = 1e-42
Identities = 48/208 (23%), Positives = 70/208 (33%), Gaps = 36/208 (17%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMYG 84
PLH+A V L S KD G PLH + S +I LL
Sbjct: 2 SNYPLHQACMENEFFKVQELLH--SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 59
Query: 85 ADPSDSAIG---GIRPLHDAAEKGCVEMVRLL------------------PLHDAAEKGC 123
+ + G P H A G +E+V+ L LH A K
Sbjct: 60 ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKW 119
Query: 124 VEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG-ADPLLASYA 182
E+ + L+ GA + PLH AA G ++++ LL G +
Sbjct: 120 FEVSQFLIENGASVRIKDKFNQ------IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQ 173
Query: 183 GHTPLSITSD----ETTRKLLQYHLADV 206
G TPL + L++ + A+
Sbjct: 174 GWTPLFHALAEGHGDAAVLLVEKYGAEY 201
Score = 137 bits (347), Expect = 3e-40
Identities = 46/212 (21%), Positives = 77/212 (36%), Gaps = 42/212 (19%)
Query: 22 INK--HHGETPLHRAARLGYIDAVAYCLEKFSHG-----PAPKDNAGYTPLHEAASHGWL 74
+ + G PLH + + ++ L S D++G+TP H A S G L
Sbjct: 29 LLQKDQDGRIPLHWSVSFQAHEITSFLL---SKMENVNLDDYPDDSGWTPFHIACSVGNL 85
Query: 75 DIARLLL--MYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLH 116
++ + L D + G+ LH A K E+ + L PLH
Sbjct: 86 EVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLH 145
Query: 117 DAAEKGCVEMVRLLLSYGADPLLAS----YAVYFLSLPSRPLHDAAEKGCVEMVRLLLS- 171
AA G ++++ LL G + + PL A +G + LL+
Sbjct: 146 RAASVGSLKLIELLCGLGKSAVNWQDKQGWT---------PLFHALAEGHGDAAVLLVEK 196
Query: 172 YGADPLLASYAGHTPLSITSDETTRKLLQYHL 203
YGA+ L G + +E +K ++
Sbjct: 197 YGAEYDLVDNKGAKAEDVALNEQVKKFFLNNV 228
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 143 bits (363), Expect = 1e-42
Identities = 54/193 (27%), Positives = 79/193 (40%), Gaps = 30/193 (15%)
Query: 22 INK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIA 77
+ +PLH AA G++D + G TPL EAA + L+
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLV---QAGANIDTCSEDQRTPLMEAAENNHLEAV 60
Query: 78 RLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL-----------------PLHDAAE 120
+ L+ GA G LH AA+KG E+V+ L P+ A E
Sbjct: 61 KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE 120
Query: 121 KGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLAS 180
V++V+LLLS G+D + LH AA GCV++ +LL+ D +
Sbjct: 121 YKHVDLVKLLLSKGSDINIRDNEEN------ICLHWAAFSGCVDIAEILLAAKCDLHAVN 174
Query: 181 YAGHTPLSITSDE 193
G +PL I + E
Sbjct: 175 IHGDSPLHIAARE 187
Score = 141 bits (359), Expect = 4e-42
Identities = 63/225 (28%), Positives = 87/225 (38%), Gaps = 41/225 (18%)
Query: 8 DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNA 60
D GA I+ TPL AA +++AV Y + G KD
Sbjct: 25 DICHMLVQAGAN-----IDTCSEDQRTPLMEAAENNHLEAVKYLI---KAGALVDPKDAE 76
Query: 61 GYTPLHEAASHGWLDIARLLLMYGA-DPSDSAIGGIRPLHDAAEKGCVEMVRLL------ 113
G T LH AA G ++ + LL G D + GG P+ A E V++V+LL
Sbjct: 77 GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136
Query: 114 ----------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCV 163
LH AA GCV++ +LL+ D + PLH AA +
Sbjct: 137 INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGD------SPLHIAARENRY 190
Query: 164 EMVRLLLSYGADPLLASYAGHTPLSITSDE---TTRKLLQYHLAD 205
+ V L LS +D L + G TPL S + + L D
Sbjct: 191 DCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235
Score = 121 bits (306), Expect = 4e-34
Identities = 46/174 (26%), Positives = 70/174 (40%), Gaps = 34/174 (19%)
Query: 57 KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL--- 113
+ +PLH AA G +DI +L+ GA+ + PL +AAE +E V+ L
Sbjct: 7 EHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA 66
Query: 114 -------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR----PLHD 156
LH AA+KG E+V+ LLS G + P+
Sbjct: 67 GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ---------DDGGWTPMIW 117
Query: 157 AAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
A E V++V+LLLS G+D + + L + + LL D+
Sbjct: 118 ATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA-AKCDL 170
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 142 bits (360), Expect = 3e-42
Identities = 61/210 (29%), Positives = 80/210 (38%), Gaps = 37/210 (17%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEKF-SHGPAP--KDNAGYTPLHEAASHGWLDIARLLLM 82
G+TPLH A G + AV + F G +N TPLH A + RLL+
Sbjct: 8 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67
Query: 83 YGADPSDSAIGGIRPLHDAAEKGCVEMVRLL--------------------PLHDAAEKG 122
GA P G H A E +R L LH A
Sbjct: 68 AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 127
Query: 123 CVEMVRLLLSYGADPLLASYAVYFLSLPSR--PLHDAAEKGCVEMVRLLLSYGADPLLAS 180
C E V+LLL GAD + + + S PL A E + MV+LLL +GA+
Sbjct: 128 CQETVQLLLERGAD-------IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQM 180
Query: 181 YAGHTPLSITSD----ETTRKLLQYHLADV 206
Y+G + L S R L++ AD
Sbjct: 181 YSGSSALHSASGRGLLPLVRTLVR-SGADS 209
Score = 141 bits (359), Expect = 6e-42
Identities = 55/210 (26%), Positives = 76/210 (36%), Gaps = 40/210 (19%)
Query: 22 INK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP---KDNAGYTPLHEAASHGWLDI 76
++ + +TPLH A V + + G A D G T H A H
Sbjct: 39 LDIYNNLRQTPLHLAVITTLPSVVRLLV---TAG-ASPMALDRHGQTAAHLACEHRSPTC 94
Query: 77 ARLLLMYGA----DPSDSAIGGIRPLHDAAEKGCVEMVRLL-----------------PL 115
R LL A D G+ LH A C E V+LL PL
Sbjct: 95 LRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPL 154
Query: 116 HDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGAD 175
A E + MV+LLL +GA+ Y+ LH A+ +G + +VR L+ GAD
Sbjct: 155 IHAVENNSLSMVQLLLQHGANVNAQMYSGS------SALHSASGRGLLPLVRTLVRSGAD 208
Query: 176 PLLASYAGHTPLSITSD----ETTRKLLQY 201
L + TPL + + R
Sbjct: 209 SSLKNCHNDTPLMVARSRRVIDILRGKATR 238
Score = 134 bits (339), Expect = 5e-39
Identities = 46/195 (23%), Positives = 67/195 (34%), Gaps = 42/195 (21%)
Query: 8 DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP------ 56
V GA HG+T H A + L
Sbjct: 60 SVVRLLVTAGAS-----PMALDRHGQTAAHLACEHRSPTCLRALL---DSAAPGTLDLEA 111
Query: 57 KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAI-GGIRPLHDAAEKGCVEMVRLL-- 113
++ G T LH A + + +LLL GAD I G PL A E + MV+LL
Sbjct: 112 RNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ 171
Query: 114 --------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAE 159
LH A+ +G + +VR L+ GAD L + PL A
Sbjct: 172 HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHND------TPLMVARS 225
Query: 160 KGCVEMVRLLLSYGA 174
+ ++++R + A
Sbjct: 226 RRVIDILRGKATRPA 240
Score = 114 bits (287), Expect = 3e-31
Identities = 50/177 (28%), Positives = 62/177 (35%), Gaps = 32/177 (18%)
Query: 57 KDNAGYTPLHEAASHGWLDIARLLLMY----GADPSDSAIGGIRPLHDAAEKGCVEMVRL 112
D G TPLH A G L L+ G + PLH A +VRL
Sbjct: 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL 64
Query: 113 L----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAV--YFLSLPSRPL 154
L H A E +R LL A L A L+ L
Sbjct: 65 LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT----AL 120
Query: 155 HDAAEKGCVEMVRLLLSYGADP-LLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
H A C E V+LLL GAD + +G +PL + + LLQ H A+V
Sbjct: 121 HVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ-HGANV 176
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 143 bits (363), Expect = 4e-42
Identities = 59/212 (27%), Positives = 81/212 (38%), Gaps = 36/212 (16%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGP---APKDNAGYTPLHEAASHGWLDIARLLLMY 83
L +A + +D V L G ++ G+TPLH A DI LLL +
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLL---EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61
Query: 84 GADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMV 127
GADP G P AA G V++++L +AA G V+ +
Sbjct: 62 GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121
Query: 128 RLLLSYGADPLLASYAVYFLSLPSR----PLHDAAEKGCVEMVRLLLS-YGADPLLASYA 182
+ L GA+ L + L DAAEKG VE++++LL GAD
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM 181
Query: 183 GHTPLSI--------TSDETTRKLLQYHLADV 206
G L + T LL H ADV
Sbjct: 182 GRNALIHALLSSDDSDVEAITHLLLD-HGADV 212
Score = 129 bits (326), Expect = 2e-36
Identities = 58/248 (23%), Positives = 81/248 (32%), Gaps = 70/248 (28%)
Query: 8 DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNA 60
D VE GA+ +G TP AA G + + L S G D
Sbjct: 53 DIVELLLRHGAD-----PVLRKKNGATPFLLAAIAGSVKLLKLFL---SKGADVNECDFY 104
Query: 61 GYTPLHEAASHGWLDIARLLLMYGAD----------PSDSAIGGIRPLHDAAEKGCVEMV 110
G+T EAA +G + + L GA+ GG L DAAEKG VE++
Sbjct: 105 GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL 164
Query: 111 RLL-----------------PLHDAAEKG----CVEMVRLLLSYGADPLLASYAVYFLSL 149
++L L A + LLL +GAD
Sbjct: 165 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV------------ 212
Query: 150 PSR------PLHDAAEKGCVEMVRLLLS-YGADPLLASYAGHTPLSITSD----ETTRKL 198
R PL A EK + +V+ LL + G T L + + + L
Sbjct: 213 NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL 272
Query: 199 LQYHLADV 206
+ A
Sbjct: 273 CK-RGAST 279
Score = 116 bits (293), Expect = 1e-31
Identities = 44/183 (24%), Positives = 69/183 (37%), Gaps = 39/183 (21%)
Query: 55 APKDNAGYTPLHEAASHGWLDIARLLLMYGADP-SDSAIGGIRPLHDAAEKGCVEMVRLL 113
A + L +A + +D+ + LL GA+ GG PLH+A + ++V LL
Sbjct: 1 AAVE--DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELL 58
Query: 114 ----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDA 157
P AA G V++++L LS GAD + + +A
Sbjct: 59 LRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGF------TAFMEA 112
Query: 158 AEKGCVEMVRLLLSYGAD----------PLLASYAGHTPLSITSD----ETTRKLLQYHL 203
A G V+ ++ L GA+ G T L ++ E + LL
Sbjct: 113 AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG 172
Query: 204 ADV 206
ADV
Sbjct: 173 ADV 175
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 141 bits (358), Expect = 9e-42
Identities = 54/217 (24%), Positives = 72/217 (33%), Gaps = 50/217 (23%)
Query: 25 HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLM 82
GET LH AAR DA L +DN G TPLH A S + ++L+
Sbjct: 55 RTGETALHLAARYSRSDAAKRLL---EASADANIQDNMGRTPLHAAVSADAQGVFQILIR 111
Query: 83 YGA-DPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVE 125
A D G PL AA M+ L LH AA V+
Sbjct: 112 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD 171
Query: 126 MVRLLLSYGADP---------LLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADP 176
+LL GA+ PL AA +G E ++LL + A+
Sbjct: 172 AAVVLLKNGANKDMQNNREET---------------PLFLAAREGSYETAKVLLDHFANR 216
Query: 177 LLASYAGHTPLSITSD----ETTRKLLQYHLADVRGH 209
+ + P I + + R L H H
Sbjct: 217 DITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHHH 253
Score = 139 bits (353), Expect = 7e-41
Identities = 54/221 (24%), Positives = 75/221 (33%), Gaps = 43/221 (19%)
Query: 22 INK--HHGETPLHRAARLGYIDAVAYCLEKF----------SHG---PAPKDNAGYTPLH 66
+N G TPL A+ G E+ G D G T LH
Sbjct: 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62
Query: 67 EAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------------- 113
AA + D A+ LL AD + G PLH A + ++L
Sbjct: 63 LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 122
Query: 114 ----PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLL 169
PL AA M+ L++ AD LH AA V+ +L
Sbjct: 123 DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKS------ALHWAAAVNNVDAAVVL 176
Query: 170 LSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
L GA+ + + TPL + + ET + LL H A+
Sbjct: 177 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLD-HFANR 216
Score = 113 bits (285), Expect = 8e-31
Identities = 35/136 (25%), Positives = 52/136 (38%), Gaps = 23/136 (16%)
Query: 22 INK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIA 77
++ H G TPL AARL + + + D+ G + LH AA+ +D A
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLI---NSHADVNAVDDLGKSALHWAAAVNNVDAA 173
Query: 78 RLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEK 121
+LL GA+ PL AA +G E ++L P A E+
Sbjct: 174 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 233
Query: 122 GCVEMVRLLLSYGADP 137
++VRLL
Sbjct: 234 MHHDIVRLLDLEHHHH 249
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 138 bits (351), Expect = 1e-41
Identities = 42/176 (23%), Positives = 70/176 (39%), Gaps = 22/176 (12%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
+H+ A G +D + L K + D G+TPL A++ G ++ R LL +GAD
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 87 PSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLL 130
P A L A+ G ++V LL PL A V+ V L
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121
Query: 131 LSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTP 186
L+ GAD + + Y P+ A G ++ +++ ++ ++ P
Sbjct: 122 LARGADLTTEADSGY------TPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
Score = 86.3 bits (215), Expect = 2e-21
Identities = 33/135 (24%), Positives = 51/135 (37%), Gaps = 28/135 (20%)
Query: 93 GGIRPLHDAAEKGCVEMVRLL-----------------PLHDAAEKGCVEMVRLLLSYGA 135
G +H A +G ++ ++ PL A+ G +E VR LL +GA
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60
Query: 136 DPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD--- 192
DP + + L A+ G ++V LLL D + + G TPL
Sbjct: 61 DPHILAKERE------SALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNH 114
Query: 193 -ETTRKLLQYHLADV 206
+ LL AD+
Sbjct: 115 VKCVEALLA-RGADL 128
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 141 bits (358), Expect = 2e-41
Identities = 38/185 (20%), Positives = 59/185 (31%), Gaps = 29/185 (15%)
Query: 22 INK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARL 79
K HG + + A + V L + G PLH+AA+ I ++
Sbjct: 24 TFKADVHGHSASYYAIADNNVRLVCTLL---NAGALKNLLENEFPLHQAATLEDTKIVKI 80
Query: 80 LLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL-----------------PLHDAAEKG 122
LL G D S G L+ A + G ++ V+L + A
Sbjct: 81 LLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLN 140
Query: 123 CVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYA 182
V +V LS + +H + G V+M+ LLL Y +
Sbjct: 141 DVSIVSYFLSEIPSTFDLAIL-------LSCIHITIKNGHVDMMILLLDYMTSTNTNNSL 193
Query: 183 GHTPL 187
P
Sbjct: 194 LFIPD 198
Score = 136 bits (345), Expect = 2e-39
Identities = 30/210 (14%), Positives = 60/210 (28%), Gaps = 47/210 (22%)
Query: 8 DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNA 60
V+ G + ++ G T L+ A G + V +
Sbjct: 76 KIVKILLFSGLD-----DSQFDDKGNTALYYAVDSGNMQTVKLFV---KKNWRLMFYGKT 127
Query: 61 GY-TPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------ 113
G+ T + A + I L D AI + +H + G V+M+ LL
Sbjct: 128 GWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAIL-LSCIHITIKNGHVDMMILLLDYMTS 186
Query: 114 -----------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGC 162
+ A + +EM++ L Y + +
Sbjct: 187 TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINI-------------YSANLENVLLDD 233
Query: 163 VEMVRLLLSYGADPLLASYAGHTPLSITSD 192
E+ ++++ + SY + +
Sbjct: 234 AEIAKMIIEKHVEYKSDSYTKDLDIVKNNK 263
Score = 91.4 bits (228), Expect = 2e-22
Identities = 30/186 (16%), Positives = 48/186 (25%), Gaps = 50/186 (26%)
Query: 61 GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------- 113
G + + L D + + G + A V +V L
Sbjct: 1 GMDLSR--INTWKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK 57
Query: 114 -------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR----PLHDAAEKGC 162
PLH AA ++V++LL G D S L+ A + G
Sbjct: 58 NLLENEFPLHQAATLEDTKIVKILLFSGLDD----------SQFDDKGNTALYYAVDSGN 107
Query: 163 VEMVRLLLSYGADPLLASYAG-HTPLSITSD----ETTRKLLQY--------------HL 203
++ V+L + + G T L H+
Sbjct: 108 MQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHI 167
Query: 204 ADVRGH 209
GH
Sbjct: 168 TIKNGH 173
Score = 56.8 bits (138), Expect = 6e-10
Identities = 10/104 (9%), Positives = 25/104 (24%), Gaps = 21/104 (20%)
Query: 8 DTVE---DVGAEVRSWVINK--HHGETP-LHRAARLGYIDAVAYCLEKFSHGPAPKDNA- 60
D + D N P + A I+ + +
Sbjct: 175 DMMILLLDYMTS-----TNTNNSLLFIPDIKLAIDNKDIEMLQALF---KYD------IN 220
Query: 61 GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEK 104
Y+ E +IA++++ + + + +
Sbjct: 221 IYSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKL 264
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 139 bits (354), Expect = 3e-41
Identities = 56/230 (24%), Positives = 79/230 (34%), Gaps = 47/230 (20%)
Query: 8 DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGP---APKDN 59
+ + G + + + T LH AA ID V Y + S G +
Sbjct: 23 ERCRELVEAGYD-----VRQPDKENVTLLHWAAINNRIDLVKYYI---SKGAIVDQLGGD 74
Query: 60 AGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------ 113
TPLH A G L + L+ YGADPS G +H AA+ G +V L
Sbjct: 75 LNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD 134
Query: 114 ----------PLHDAAEKG-CVEMVRLLLSYGADPLLASYAVYFLSLPSR--PLHDAAEK 160
PL AA + V+ RLLL++ V + LH A
Sbjct: 135 VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS-------VNLGDKYHKNTALHWAVLA 187
Query: 161 GCVEMVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
G ++ LLL GA+ + G + L + LQ
Sbjct: 188 GNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMI-NHLQEARQAK 236
Score = 131 bits (333), Expect = 4e-38
Identities = 45/216 (20%), Positives = 73/216 (33%), Gaps = 45/216 (20%)
Query: 22 INK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIA 77
+ + + +A + G + + G D T LH AA + +D+
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELV---EAGYDVRQPDKENVTLLHWAAINNRIDLV 58
Query: 78 RLLLMYGADP-SDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAE 120
+ + GA PLH A +G + MV L +H AA+
Sbjct: 59 KYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ 118
Query: 121 KGCVEMVRLLLSYGADPLLASYAVYFLSLPSR----PLHDAAEKG-CVEMVRLLLSYGAD 175
G +V L++ G D + + PL AA + V+ RLLL++
Sbjct: 119 FGHTSIVAYLIAKGQDV----------DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS 168
Query: 176 P-LLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
L Y +T L LL+ A+V
Sbjct: 169 VNLGDKYHKNTALHWAVLAGNTTVISLLLEAG-ANV 203
Score = 81.3 bits (202), Expect = 7e-19
Identities = 29/123 (23%), Positives = 41/123 (33%), Gaps = 16/123 (13%)
Query: 8 DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNA 60
V G + ++ +G TPL AA + L + + D
Sbjct: 123 SIVAYLIAKGQD-----VDMMDQNGMTPLMWAAYRTHSVDPTRLL--LTFNVSVNLGDKY 175
Query: 61 -GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAA 119
T LH A G + LLL GA+ I G L A ++ V M+ L
Sbjct: 176 HKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL-QEARQ 234
Query: 120 EKG 122
KG
Sbjct: 235 AKG 237
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 138 bits (351), Expect = 5e-41
Identities = 42/192 (21%), Positives = 65/192 (33%), Gaps = 38/192 (19%)
Query: 8 DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP---KDN 59
D + + A+ N + G TPLH A + + + +
Sbjct: 39 DAAKRLLEASAD-----ANIQDNMGRTPLHAAVSADAQGVFQILI---RNRATDLDARMH 90
Query: 60 AGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------ 113
G TPL AA + L+ AD + G LH AA V+ +L
Sbjct: 91 DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 150
Query: 114 ----------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCV 163
PL AA +G E ++LL + A+ + + P A E+
Sbjct: 151 KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDR------LPRDIAQERMHH 204
Query: 164 EMVRLLLSYGAD 175
++VRLL Y
Sbjct: 205 DIVRLLDEYNLV 216
Score = 138 bits (350), Expect = 8e-41
Identities = 53/208 (25%), Positives = 73/208 (35%), Gaps = 50/208 (24%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMY 83
GET LH AAR DA L +DN G TPLH A S + ++L+
Sbjct: 24 TGETALHLAARYSRSDAAKRLL---EASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 80
Query: 84 GADPSDSA-IGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEM 126
A D+ G PL AA M+ L LH AA V+
Sbjct: 81 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDA 140
Query: 127 VRLLLSYGADPLLASYAVYFLSLPSR---------PLHDAAEKGCVEMVRLLLSYGADPL 177
+LL GA+ PL AA +G E ++LL + A+
Sbjct: 141 AVVLLKNGANK---------------DMQNNREETPLFLAAREGSYETAKVLLDHFANRD 185
Query: 178 LASYAGHTPLSITSD----ETTRKLLQY 201
+ + P I + + R L +Y
Sbjct: 186 ITDHMDRLPRDIAQERMHHDIVRLLDEY 213
Score = 125 bits (316), Expect = 1e-35
Identities = 46/180 (25%), Positives = 64/180 (35%), Gaps = 31/180 (17%)
Query: 51 SHG---PAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCV 107
G D G T LH AA + D A+ LL AD + G PLH A
Sbjct: 12 YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQ 71
Query: 108 EMVRLL-----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLP 150
+ ++L PL AA M+ L++ AD
Sbjct: 72 GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK----- 126
Query: 151 SRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
LH AA V+ +LL GA+ + + TPL + + ET + LL H A+
Sbjct: 127 -SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD-HFANR 184
Score = 93.2 bits (233), Expect = 2e-23
Identities = 30/162 (18%), Positives = 48/162 (29%), Gaps = 39/162 (24%)
Query: 72 GWLDIARLLLMYGADPSDSA-IGGIRPLHDAAEKGCVEMVRLL----------------P 114
+ + GA + G LH AA + + L P
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61
Query: 115 LHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR------PLHDAAEKGCVEMVRL 168
LH A + ++L+ A L A R PL AA M+
Sbjct: 62 LHAAVSADAQGVFQILIRNRATDLDA-----------RMHDGTTPLILAARLAVEGMLED 110
Query: 169 LLSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
L++ AD G + L + + LL+ + A+
Sbjct: 111 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANK 151
Score = 70.5 bits (174), Expect = 4e-15
Identities = 20/65 (30%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMY 83
ETPL AAR G + L H D+ P A DI RLL Y
Sbjct: 157 REETPLFLAAREGSYETAKVLL---DHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY 213
Query: 84 GADPS 88
S
Sbjct: 214 NLVRS 218
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 135 bits (343), Expect = 2e-40
Identities = 41/168 (24%), Positives = 66/168 (39%), Gaps = 27/168 (16%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMY 83
+H+ A G + +A + D G+TPL AA+HG + + LL
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRI---EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN 58
Query: 84 GADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMV 127
GADP G L A KG ++V++L PL A V+ V
Sbjct: 59 GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCV 118
Query: 128 RLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGAD 175
++LL GADP + + + Y + A G + +++ S+
Sbjct: 119 KMLLESGADPTIETDSGY------NSMDLAVALGYRSVQQVIESHLLK 160
Score = 94.0 bits (235), Expect = 2e-24
Identities = 35/152 (23%), Positives = 53/152 (34%), Gaps = 30/152 (19%)
Query: 60 AGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEK-GCVEMVRLLPLHDA 118
A +H+ A+ G + + + ++ G PL A
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVI------------NHTDEEGFT------PLMWA 43
Query: 119 AEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLL 178
A G + +V LL GADP L L A KG ++V++LL G D
Sbjct: 44 AAHGQIAVVEFLLQNGADPQLLGKGRE------SALSLACSKGYTDIVKMLLDCGVDVNE 97
Query: 179 ASYAGHTPLSITSD----ETTRKLLQYHLADV 206
+ G TPL + + LL+ AD
Sbjct: 98 YDWNGGTPLLYAVHGNHVKCVKMLLE-SGADP 128
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 138 bits (350), Expect = 2e-39
Identities = 32/220 (14%), Positives = 64/220 (29%), Gaps = 49/220 (22%)
Query: 8 DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEK--FSHGPAP--KD 58
+ ++ +GA ETPL RA +A+ ++ +
Sbjct: 154 EMIKILVQLGAS-----PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYAN 208
Query: 59 NAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----- 113
G + LH A W D+A + G D + PL+ + V + + L
Sbjct: 209 KQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTD 268
Query: 114 ------------------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSL 149
+ AA+ E+++LL + + +
Sbjct: 269 VFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGA---- 324
Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSI 189
+K + R+ L+ A S + ++
Sbjct: 325 --GGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAV 362
Score = 126 bits (318), Expect = 8e-35
Identities = 40/208 (19%), Positives = 65/208 (31%), Gaps = 39/208 (18%)
Query: 22 INK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARL 79
G T LH A + G +D Y S G G P+H A D+
Sbjct: 46 PTIQNRFGCTALHLACKFGCVDTAKYLA---SVGEVHSLWHGQKPIHLAVMANKTDLVVA 102
Query: 80 LLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------PLHDAAEKGC--VEMV 127
L+ + G P E E+ + LH G +EM+
Sbjct: 103 LVEGAKER------GQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMI 156
Query: 128 RLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSY-----GADPLLASYA 182
++L+ GA P + PL A E E + L++ A+
Sbjct: 157 KILVQLGASPTAKDK--ADET----PLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ 210
Query: 183 GHTPLSITS----DETTRKLLQYHLADV 206
G++ L ++ + ++ DV
Sbjct: 211 GNSHLHWAILINWEDVAMRFVEMG-IDV 237
Score = 121 bits (307), Expect = 4e-33
Identities = 45/213 (21%), Positives = 67/213 (31%), Gaps = 49/213 (23%)
Query: 22 INK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIA 77
K +H AAR G D V + G +P ++ G T LH A G +D A
Sbjct: 13 RIKSDDENMEKIHVAARKGQTDEVRRLI---ETGVSPTIQNRFGCTALHLACKFGCVDTA 69
Query: 78 RLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------PLHDAAEKGCVEMV 127
+ L G S G +P+H A ++V L P E E+
Sbjct: 70 KYLASVGEVHSLW--HGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVN 127
Query: 128 RLLL----SYGADPLLASYAVYFLSLPSRPLHDAAEKGC--VEMVRLLLSYGADPLLASY 181
+ G LH G +EM+++L+ GA P
Sbjct: 128 EIGSHVKHCKG----------------QTALHWCVGLGPEYLEMIKILVQLGASPTAKDK 171
Query: 182 AGHTPLSITSD----ETTRKLLQY----HLADV 206
A TPL + E ++ +
Sbjct: 172 ADETPLMRAMEFRNREALDLMMDTVPSKSSLRL 204
Score = 38.3 bits (90), Expect = 0.001
Identities = 2/45 (4%), Positives = 8/45 (17%), Gaps = 5/45 (11%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEA 68
G + + L + + + +
Sbjct: 322 TGAGGAVKRKKKAAPAVKRMKL---APSAPVRTRSRSRARSSAVS 363
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 138 bits (349), Expect = 2e-39
Identities = 56/213 (26%), Positives = 80/213 (37%), Gaps = 37/213 (17%)
Query: 12 DVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAA 69
D A+ V+ + + L AAR G + + L D TPLH AA
Sbjct: 12 DPSAKA---VLTGEYKKDELLEAARSGNEEKLMALL--TPLNVNCHASDGRKSTPLHLAA 66
Query: 70 SHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---------------- 113
+ + I +LLL +GAD GG+ PLH+A G E+ LL
Sbjct: 67 GYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFT 126
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
PLH+AA K VE+ LLLS+GADP L + + A E +
Sbjct: 127 PLHEAASKNRVEVCSLLLSHGADPTLVNCHGK------SAVDMAPTPELRERLTYEFKGH 180
Query: 174 ADPLLASYAGHTPLSITSDETTRKLLQYHLADV 206
+ L A+ +K L + +
Sbjct: 181 S-LLQAAREADL-------AKVKKTLALEIINF 205
Score = 127 bits (323), Expect = 1e-35
Identities = 46/200 (23%), Positives = 74/200 (37%), Gaps = 25/200 (12%)
Query: 22 INK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIA 77
++ G PLH A G+ + L HG D +TPLHEAAS +++
Sbjct: 84 VHAKDKGGLVPLHNACSYGHYEVTELLL---KHGACVNAMDLWQFTPLHEAASKNRVEVC 140
Query: 78 RLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----PLHDAAEKGCVEMVRLLLSY 133
LLL +GADP+ G + A E + L AA + + V+ L+
Sbjct: 141 SLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLAL 200
Query: 134 GADPLLASYAVYFLSLPSRPLHDAAEKG---CVEMVRLLLSYGADPLLASYAGHTPLSIT 190
+ LH A ++ LLL GA+ + TPL +
Sbjct: 201 EIINFKQPQSHE------TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVA 254
Query: 191 SD----ETTRKLLQYHLADV 206
++ + L ++ A +
Sbjct: 255 AERAHNDVMEVLHKHG-AKM 273
Score = 124 bits (315), Expect = 2e-34
Identities = 47/211 (22%), Positives = 67/211 (31%), Gaps = 47/211 (22%)
Query: 22 INK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIA 77
+ TPLH AA + V L HG KD G PLH A S+G ++
Sbjct: 51 CHASDGRKSTPLHLAAGYNRVRIVQLLL---QHGADVHAKDKGGLVPLHNACSYGHYEVT 107
Query: 78 RLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEK 121
LLL +GA + + PLH+AA K VE+ LL + A
Sbjct: 108 ELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTP 167
Query: 122 GCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASY 181
E + + L AA + + V+ L+
Sbjct: 168 ELRERLTYEFKGHS------------------LLQAAREADLAKVKKTLALEIINFKQPQ 209
Query: 182 AGHTPLSITSDETTR------KLLQYHLADV 206
+ T L +LL A+V
Sbjct: 210 SHETALHCAVASLHPKRKQVAELLLRKGANV 240
Score = 123 bits (312), Expect = 7e-34
Identities = 50/229 (21%), Positives = 77/229 (33%), Gaps = 55/229 (24%)
Query: 22 INK--HHGETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNAGYTPLH----------- 66
+N TPLH AA ++ + L SHG P + G + +
Sbjct: 117 VNAMDLWQFTPLHEAASKNRVEVCSLLL---SHGADPTLVNCHGKSAVDMAPTPELRERL 173
Query: 67 ----------EAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKG---CVEMVRLL 113
+AA L + L LH A ++ LL
Sbjct: 174 TYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELL 233
Query: 114 ----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDA 157
PLH AAE+ +++ +L +GA LH A
Sbjct: 234 LRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQ------TALHRA 287
Query: 158 AEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADV 206
A G ++ RLLLSYG+DP + S G T + + E +++L +
Sbjct: 288 ALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN-EAVQQILS-ESTPM 334
Score = 116 bits (294), Expect = 3e-31
Identities = 45/206 (21%), Positives = 72/206 (34%), Gaps = 59/206 (28%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEKF------------------SHGPAP--KDNAGYTPL 65
HG++ + A + + Y + + + + T L
Sbjct: 156 HGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETAL 215
Query: 66 HEAASHGW---LDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL--------- 113
H A + +A LLL GA+ ++ + PLH AAE+ +++ +L
Sbjct: 216 HCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA 275
Query: 114 -------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMV 166
LH AA G ++ RLLLSYG+DP + S + E V
Sbjct: 276 LDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFT------AAQMGN-----EAV 324
Query: 167 RLLLSYGADP---------LLASYAG 183
+ +LS L AS AG
Sbjct: 325 QQILSESTPMRTSDVDYRLLEASKAG 350
Score = 85.2 bits (212), Expect = 1e-19
Identities = 42/152 (27%), Positives = 54/152 (35%), Gaps = 28/152 (18%)
Query: 76 IARLLLMYGADPSDSAIGGIRPLHDAAEKG-CVEMVRLL----------------PLHDA 118
A L A + L +AA G +++ LL PLH A
Sbjct: 6 SALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLA 65
Query: 119 AEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLL 178
A V +V+LLL +GAD PLH+A G E+ LLL +GA
Sbjct: 66 AGYNRVRIVQLLLQHGADVHAKDKGGL------VPLHNACSYGHYEVTELLLKHGACVNA 119
Query: 179 ASYAGHTPLSITSD----ETTRKLLQYHLADV 206
TPL + E LL H AD
Sbjct: 120 MDLWQFTPLHEAASKNRVEVCSLLLS-HGADP 150
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 131 bits (333), Expect = 2e-38
Identities = 39/195 (20%), Positives = 63/195 (32%), Gaps = 32/195 (16%)
Query: 25 HHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG 84
+T + G + S+ A + + PLHEAA G L R L
Sbjct: 43 DMSDTNWWKGTSKGRTGLIP------SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNR 96
Query: 85 ADPSDSAIGGIRPLHDAAEKGCVEMVRLL-----------------PLHDAAEKGCVEMV 127
+ G L+ A G ++V +L LH AA KG ++V
Sbjct: 97 VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIV 156
Query: 128 RLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPL 187
+LLL+ GA L + A C +++ A L++ +
Sbjct: 157 QLLLAKGARTDLRNIEKK------LAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDD 210
Query: 188 SITSDETTRKLLQYH 202
+ E +H
Sbjct: 211 EDSDLEHH---HHHH 222
Score = 120 bits (304), Expect = 5e-34
Identities = 38/205 (18%), Positives = 67/205 (32%), Gaps = 37/205 (18%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMY 83
G+ + RA + T + S G R L+
Sbjct: 11 PGQVKVFRALYTFEPRTPDELY---IEEGDIIYITDMSDTNWWKGTSKG-----RTGLIP 62
Query: 84 GADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMV 127
++ A PLH+AA++G + +R L+ A G ++V
Sbjct: 63 SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIV 122
Query: 128 RLLLS-YGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTP 186
+L + + + LH AA KG ++V+LLL+ GA L +
Sbjct: 123 EMLFTQPNIELNQQNKLGD------TALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLA 176
Query: 187 LSITSDETTRKLLQYHLADVRGHEA 211
+ ++ LL+ G +A
Sbjct: 177 FDMATNAACASLLKKKQ----GTDA 197
Score = 98.1 bits (245), Expect = 2e-25
Identities = 29/170 (17%), Positives = 48/170 (28%), Gaps = 24/170 (14%)
Query: 54 PAPK-DNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRL 112
P PK G + A L + D KG ++
Sbjct: 4 PPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPS 63
Query: 113 L-----------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKG 161
PLH+AA++G + +R L A L+ A G
Sbjct: 64 NYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGS------TALYWACHGG 117
Query: 162 CVEMVRLLLS-YGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
++V +L + + + G T L + + + LL A
Sbjct: 118 HKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA-KGART 166
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 133 bits (338), Expect = 2e-38
Identities = 56/240 (23%), Positives = 69/240 (28%), Gaps = 52/240 (21%)
Query: 8 DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNA 60
++ A ++ G+T LH AA LG V + G +
Sbjct: 23 PFLDFLLGFSAGHEY--LDLQNDLGQTALHLAAILGEASTVEKLY---AAGAGVLVAERG 77
Query: 61 GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRP--------------LHDAAEKGC 106
G+T LH A A +LL A D+
Sbjct: 78 GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPE 137
Query: 107 VEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLP 150
E PLH A EMVRLL GAD +
Sbjct: 138 NEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP-----TCG 192
Query: 151 SRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
PLH A E ++ LLL GADP Y G TPL R L H A
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRA-HGAPE 251
Score = 131 bits (333), Expect = 9e-38
Identities = 47/237 (19%), Positives = 68/237 (28%), Gaps = 58/237 (24%)
Query: 8 DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEK------------F 50
TVE GA + G T LH A R+ L+
Sbjct: 59 STVEKLYAAGAG-----VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYL 113
Query: 51 SHGPAPKDNAGYTPLHEAASH-GWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEM 109
+ + + P + + + G PLH A EM
Sbjct: 114 TQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEM 173
Query: 110 VRLL-----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR 152
VRLL PLH A E ++ LLL GADP +
Sbjct: 174 VRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP----------TARMY 223
Query: 153 ----PLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQY 201
PL A + + RLL ++GA +P S + + + +Y
Sbjct: 224 GGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEY 280
Score = 125 bits (316), Expect = 4e-35
Identities = 46/220 (20%), Positives = 62/220 (28%), Gaps = 50/220 (22%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAP-----KDNAGYTPLHEAASHGWLDIARLLL 81
G+T LH A + + + L +++ G T LH AA G L
Sbjct: 9 GDTALHLAVIHQHEPFLDFLL---GFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 82 MYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---------------------------- 113
GA + GG LH A +L
Sbjct: 66 AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125
Query: 114 --PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLS 171
D+ E + +Y + PLH A EMVRLL
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH------TPLHVAVIHKDAEMVRLLRD 179
Query: 172 YGADP-LLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
GAD G TPL + + LL+ AD
Sbjct: 180 AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADP 218
Score = 116 bits (293), Expect = 9e-32
Identities = 35/171 (20%), Positives = 52/171 (30%), Gaps = 27/171 (15%)
Query: 22 INKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARL 79
P ++ + E ++ G+TPLH A H ++ RL
Sbjct: 119 CTPDTSHAPAAVDSQPNPENEEEPRDE--DWRLQLEAENYDGHTPLHVAVIHKDAEMVRL 176
Query: 80 LLMYGADPSDSAI-GGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKG 122
L GAD + G PLH A E ++ LL PL A +
Sbjct: 177 LRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP 236
Query: 123 CVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
+ RLL ++GA LS P + + Y
Sbjct: 237 NPILARLLRAHGAPEPEDGG--DKLS----PCSSSGSDSDSDNRDEGDEYD 281
Score = 114 bits (289), Expect = 3e-31
Identities = 37/181 (20%), Positives = 46/181 (25%), Gaps = 32/181 (17%)
Query: 57 KDNAGYTPLHEAASHGWLDIARLLLMYGADPSD---SAIGGIRPLHDAAEKGCVEMVRLL 113
G T LH A H LL + A G LH AA G V L
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64
Query: 114 ----------------PLHDAAEKGCVEMVRLLLSYGADP--------LLASYAVYFLSL 149
LH A +LL L S +
Sbjct: 65 YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124
Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLAD 205
+ D+ E + +Y GHTPL + E R L AD
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG-AD 183
Query: 206 V 206
+
Sbjct: 184 L 184
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 130 bits (330), Expect = 4e-38
Identities = 45/212 (21%), Positives = 74/212 (34%), Gaps = 48/212 (22%)
Query: 25 HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLM 82
+ L A + D G TPL+ A + ++IA+ L+
Sbjct: 4 YEVGALLEAANQRDTKKVKEILQ---DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60
Query: 83 YGADPSDSAIGGIRPLHDAAEKGCVEMVRLL-----------------PLHDAAEKGCVE 125
GAD + P A +G E++ + L AAEKG ++
Sbjct: 61 RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHID 120
Query: 126 MVRLLLSYG-AD----------PLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGA 174
V+LLL G D L+ AV + ++V+LL+ GA
Sbjct: 121 NVKLLLEDGREDIDFQNDFGYTALI--EAVGLRE---------GNQLYQDIVKLLMENGA 169
Query: 175 DPLLASYAGHTPLSITSD----ETTRKLLQYH 202
D + +G T + + E ++ L QY+
Sbjct: 170 DQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201
Score = 108 bits (273), Expect = 1e-29
Identities = 32/154 (20%), Positives = 50/154 (32%), Gaps = 30/154 (19%)
Query: 57 KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL--- 113
K L A + +L + G PL+ A +E+ + L
Sbjct: 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61
Query: 114 -------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR----PLHD 156
P A +G E++ +L + L +R L
Sbjct: 62 GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKH---------NRYGGNALIP 112
Query: 157 AAEKGCVEMVRLLLSYG-ADPLLASYAGHTPLSI 189
AAEKG ++ V+LLL G D + G+T L
Sbjct: 113 AAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIE 146
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 130 bits (329), Expect = 4e-38
Identities = 38/206 (18%), Positives = 58/206 (28%), Gaps = 51/206 (24%)
Query: 25 HHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG 84
+GE + + +D+ TPL A G + L+
Sbjct: 6 KNGEIVEKIKDEKSINQNLDFLRNY-------RDSYNRTPLMVACMLGMENAIDKLVENF 58
Query: 85 ADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVR 128
D I G L A + + + L PL + G EM
Sbjct: 59 DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSY 118
Query: 129 LLLSYGADPLLASYAVYFLSLPSR---------PLHDAAEKGCVEMVRLLLSYGADPLLA 179
LL +GA+ PL A++ G E+V+ LL GAD
Sbjct: 119 FLLEHGANV---------------NDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR 163
Query: 180 SYAGHTPLSITSD----ETTRKLLQY 201
G T + E + +
Sbjct: 164 DLTGLTAEASARIFGRQEVIKIFTEV 189
Score = 125 bits (318), Expect = 2e-36
Identities = 41/190 (21%), Positives = 61/190 (32%), Gaps = 50/190 (26%)
Query: 14 GAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAA 69
+ + N + TPL A LG +A+ + + KD G T L A
Sbjct: 23 NLDF---LRNYRDSYNRTPLMVACMLGMENAIDKLV---ENFDKLEDKDIEGSTALIWAV 76
Query: 70 SHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---------------- 113
+ L IA LL G++ + G PL + G EM L
Sbjct: 77 KNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGET 136
Query: 114 PLHDAAEKGCVEMVRLLLSYGADP---------LLASYAVYFLSLPSRPLHDAAEKGCVE 164
PL A++ G E+V+ LL GAD A G E
Sbjct: 137 PLIVASKYGRSEIVKKLLELGADISARDLTGLT---------------AEASARIFGRQE 181
Query: 165 MVRLLLSYGA 174
++++
Sbjct: 182 VIKIFTEVRR 191
Score = 105 bits (264), Expect = 2e-28
Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 31/151 (20%)
Query: 8 DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNA 60
+ ++ + + + G T L A + + L S G KD +
Sbjct: 49 NAIDKLVENFDK-----LEDKDIEGSTALIWAVKNNRLGIAEKLL---SKGSNVNTKDFS 100
Query: 61 GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------- 113
G TPL + G+ +++ LL +GA+ +D + G PL A++ G E+V+ L
Sbjct: 101 GKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI 160
Query: 114 ---------PLHDAAEKGCVEMVRLLLSYGA 135
A G E++++
Sbjct: 161 SARDLTGLTAEASARIFGRQEVIKIFTEVRR 191
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 131 bits (332), Expect = 2e-37
Identities = 55/203 (27%), Positives = 84/203 (41%), Gaps = 28/203 (13%)
Query: 22 INK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIA 77
IN G T LH+A +D V + + +G DN G+ PLH AAS G+LDIA
Sbjct: 66 INYANVDGLTALHQACIDDNVDMVKFLV---ENGANINQPDNEGWIPLHAAASCGYLDIA 122
Query: 78 RLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------PLHDAAEKGCVEMV 127
L+ GA G PL A E+ E+++ + +
Sbjct: 123 EYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDAR 182
Query: 128 RLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPL 187
+ L S + + + + LH AA KG E+++LL+ D + Y G TPL
Sbjct: 183 QWLNSGHINDVRHAKSGGT------ALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPL 236
Query: 188 SITSD----ETTRKLLQYHLADV 206
+ E R L++ +L D+
Sbjct: 237 HAAAHWGKEEACRILVE-NLCDM 258
Score = 124 bits (315), Expect = 8e-35
Identities = 49/223 (21%), Positives = 75/223 (33%), Gaps = 59/223 (26%)
Query: 8 DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNA 60
D V+ + GA IN+ + G PLH AA GY+D Y + S G ++
Sbjct: 87 DMVKFLVENGAN-----INQPDNEGWIPLHAAASCGYLDIAEYLI---SQGAHVGAVNSE 138
Query: 61 GYTPLHEAASHGWLDIARLLLMY-GADPSDSAIGGIRPLHDAAEKGCVEMVRLL------ 113
G TPL A ++ + + G D + + + L
Sbjct: 139 GDTPLDIAEEEAMEELLQNEVNRQGVD-------IEAARKEEERIMLRDARQWLNSGHIN 191
Query: 114 ----------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR-------PLHD 156
LH AA KG E+++LL+ D + PLH
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-------------NIKDYDGWTPLHA 238
Query: 157 AAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLL 199
AA G E R+L+ D + G T + ++ L
Sbjct: 239 AAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLE 281
Score = 123 bits (311), Expect = 3e-34
Identities = 39/215 (18%), Positives = 71/215 (33%), Gaps = 42/215 (19%)
Query: 14 GAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASH 71
+ + K A G + V L G + G T LH+A
Sbjct: 31 RKKTKV----KFDDGAVFLAACSSGDTEEVLRLL---ERGADINYANVDGLTALHQACID 83
Query: 72 GWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PL 115
+D+ + L+ GA+ + G PLH AA G +++ L PL
Sbjct: 84 DNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPL 143
Query: 116 HDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGAD 175
A E+ E+++ ++ + A + + + L S +
Sbjct: 144 DIAEEEAMEELLQNEVNRQGVDIEA------------ARKEEERIMLRDARQWLNSGHIN 191
Query: 176 PLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
+ + +G T L + + E + L+Q DV
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDV 225
Score = 120 bits (303), Expect = 4e-33
Identities = 40/199 (20%), Positives = 66/199 (33%), Gaps = 33/199 (16%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMYG 84
+ +G + + K + G A S G + LL G
Sbjct: 8 QKRNEQLKRWIGSETDLEPPV---VKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLERG 63
Query: 85 ADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVR 128
AD + + + G+ LH A V+MV+ L PLH AA G +++
Sbjct: 64 ADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAE 123
Query: 129 LLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSY-GADPLLASYAGHTPL 187
L+S GA + S PL A E+ E+++ ++ G D A +
Sbjct: 124 YLISQGAHVGAVN------SEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM 177
Query: 188 SITSDETTRKLLQYHLADV 206
R+ L +
Sbjct: 178 LR----DARQWLNSGHIND 192
Score = 110 bits (277), Expect = 3e-29
Identities = 34/177 (19%), Positives = 51/177 (28%), Gaps = 41/177 (23%)
Query: 57 KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL--- 113
D G ++ G A G E V L
Sbjct: 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLER 62
Query: 114 -------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR-------P 153
LH A V+MV+ L+ GA+ ++ P
Sbjct: 63 GADINYANVDGLTALHQACIDDNVDMVKFLVENGAN-------------INQPDNEGWIP 109
Query: 154 LHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
LH AA G +++ L+S GA + G TPL I + E + + D+
Sbjct: 110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI 166
Score = 107 bits (269), Expect = 3e-28
Identities = 32/165 (19%), Positives = 47/165 (28%), Gaps = 29/165 (17%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
G+TPL A + + + + + E D + L +
Sbjct: 139 GDTPLDIAEEEAMEELLQNEVNR-------QGVDIEAARKEEERIMLRDARQWLNSGHIN 191
Query: 87 PSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLL 130
A G LH AA KG E+++LL PLH AA G E R+L
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251
Query: 131 LSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGAD 175
+ D + A E + L
Sbjct: 252 VENLCDMEAVNKVGQ------TAFDVADEDILGYLEELQKKQNLL 290
Score = 98.0 bits (245), Expect = 1e-24
Identities = 29/135 (21%), Positives = 43/135 (31%), Gaps = 23/135 (17%)
Query: 22 INKH--HGETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNAGYTPLHEAASHGWLDIA 77
+N+ E R+ DA + S +G T LH AA+ G+ ++
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLN---SGHINDVRHAKSGGTALHVAAAKGYTEVL 215
Query: 78 RLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEK 121
+LL+ D + G PLH AA G E R+L A E
Sbjct: 216 KLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED 275
Query: 122 GCVEMVRLLLSYGAD 136
+ L
Sbjct: 276 ILGYLEELQKKQNLL 290
Score = 53.3 bits (129), Expect = 1e-08
Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 15/89 (16%)
Query: 8 DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNA 60
+ ++ + +N + G TPLH AA G +A + + +
Sbjct: 213 EVLKLLIQARYD-----VNIKDYDGWTPLHAAAHWGKEEACRILV---ENLCDMEAVNKV 264
Query: 61 GYTPLHEAASHGWLDIARLLLMYGADPSD 89
G T A + L S+
Sbjct: 265 GQTAFDVADEDILGYLEELQKKQNLLHSE 293
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 128 bits (325), Expect = 5e-37
Identities = 45/191 (23%), Positives = 62/191 (32%), Gaps = 43/191 (22%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEKFSHGPA-------PKDNAGYTPLHEAASHGWLDIAR 78
GET LH AA ++A + P + G T LH A + +++ R
Sbjct: 36 MGETALHIAALYDNLEAAMVLM---EAAPELVFEPMTSELYEGQTALHIAVINQNVNLVR 92
Query: 79 LLLMYGAD-------------PSDSAIGGIRPLHDAAEKGCVEMVRLL------------ 113
LL GA P + G PL AA G E+VRLL
Sbjct: 93 ALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDS 152
Query: 114 ----PLHDAAEKGCVEMVR----LLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEM 165
LH + LLLSY L S + + P A +G + M
Sbjct: 153 LGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVM 212
Query: 166 VRLLLSYGADP 176
+ L+
Sbjct: 213 FQHLMQKRKHI 223
Score = 126 bits (319), Expect = 4e-36
Identities = 48/196 (24%), Positives = 72/196 (36%), Gaps = 30/196 (15%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMYG 84
E+PL AA+ + A++ L+ G + G T LH AA + L+ A +L+
Sbjct: 3 WESPLLLAAKENDVQALSKLLK--FEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAA 60
Query: 85 ADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGAD-------P 137
+ P+ +G LH A V +VR LL+ GA
Sbjct: 61 PELVFE------PMTSELYEGQT------ALHIAVINQNVNLVRALLARGASVSARATGS 108
Query: 138 LLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPL-------SIT 190
+ + PL AA G E+VRLL+ +GAD G+T L + T
Sbjct: 109 VFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKT 168
Query: 191 SDETTRKLLQYHLADV 206
LL +
Sbjct: 169 FACQMYNLLLSYDGGD 184
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 125 bits (318), Expect = 1e-36
Identities = 53/190 (27%), Positives = 77/190 (40%), Gaps = 55/190 (28%)
Query: 14 GAEVRSWVINKHHG---ETPLHRAARLGYIDAVAYCLEKFSHGPAP---KDNAGYTPLHE 67
G+ + HHG L AAR G D V + ++G A +D +G+TPLH
Sbjct: 3 GSHH-----HHHHGSDLGKKLLEAARAGRDDEVRILM---ANG-ADVNAEDASGWTPLHL 53
Query: 68 AASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL-------------- 113
AA +G L+I +LL GAD + G+ PL AA G +E+V +L
Sbjct: 54 AAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEG 113
Query: 114 --PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR---------PLHDAAEKGC 162
PLH AA G +E+V +LL GAD + + G
Sbjct: 114 HTPLHLAAMFGHLEIVEVLLKNGADV---------------NAQDKFGKTAFDISIDNGN 158
Query: 163 VEMVRLLLSY 172
++ +L
Sbjct: 159 EDLAEILQKL 168
Score = 91.3 bits (228), Expect = 3e-23
Identities = 49/154 (31%), Positives = 65/154 (42%), Gaps = 28/154 (18%)
Query: 57 KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLH 116
+ L EAA G D R+L+ GAD ++ G PLH
Sbjct: 10 HGSDLGKKLLEAARAGRDDEVRILMANGAD-----------VNAEDASGWT------PLH 52
Query: 117 DAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADP 176
AA G +E+V +LL GAD +A PL AA G +E+V +LL GAD
Sbjct: 53 LAAFNGHLEIVEVLLKNGADVNAVDHAGM------TPLRLAALFGHLEIVEVLLKNGADV 106
Query: 177 LLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
GHTPL + + E LL+ + ADV
Sbjct: 107 NANDMEGHTPLHLAAMFGHLEIVEVLLK-NGADV 139
Score = 87.4 bits (218), Expect = 8e-22
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 8 DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPA---PKDN 59
+ VE GA+ +N H G TPL AA G+++ V L +G A D
Sbjct: 61 EIVEVLLKNGAD-----VNAVDHAGMTPLRLAALFGHLEIVEVLL---KNG-ADVNANDM 111
Query: 60 AGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHD 117
G+TPLH AA G L+I +LL GAD + G + + G ++ +L +
Sbjct: 112 EGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 124 bits (314), Expect = 4e-36
Identities = 49/176 (27%), Positives = 71/176 (40%), Gaps = 38/176 (21%)
Query: 22 INKHHGETPLHRAARLGYIDAVAYCLEKFSHGPA---PKDNAGYTPLHEAASHGWLDIAR 78
N + L AA+ G ++ V + + TPLH AA + + +
Sbjct: 4 GNSE-ADRQLLEAAKAGDVETVKKLC---TVQSVNCRDIEGRQSTPLHFAAGYNRVSVVE 59
Query: 79 LLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKG 122
LL +GAD GG+ PLH+A G E+ LL PLH+AA KG
Sbjct: 60 YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG 119
Query: 123 CVEMVRLLLSYGADPLLASYAVYFLSLPSR----PLHDAAEKGCVEMVRLLLSYGA 174
E+ +LLL +GADP + +R PL + G ++ LL A
Sbjct: 120 KYEICKLLLQHGADP----------TKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164
Score = 116 bits (294), Expect = 3e-33
Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 26/167 (15%)
Query: 55 APKDNAGYTPLHEAASHGWLDIARLLL-MYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
A ++ L EAA G ++ + L + + D PLH AA V +V L
Sbjct: 2 AMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYL 61
Query: 114 ----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDA 157
PLH+A G E+ LL+ +GA +A + PLH+A
Sbjct: 62 LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF------TPLHEA 115
Query: 158 AEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD---ETTRKLLQY 201
A KG E+ +LLL +GADP + G+TPL + D + L
Sbjct: 116 AAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQDLLRGD 162
Score = 82.8 bits (206), Expect = 3e-20
Identities = 37/136 (27%), Positives = 52/136 (38%), Gaps = 35/136 (25%)
Query: 8 DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPA---PKDN 59
VE GA+ ++ G PLH A G+ + + HG A D
Sbjct: 56 SVVEYLLQHGAD-----VHAKDKGGLVPLHNACSYGHYEVAELLV---KHG-AVVNVADL 106
Query: 60 AGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAA 119
+TPLHEAA+ G +I +LLL +GADP+ G PL +
Sbjct: 107 WKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD---------------- 150
Query: 120 EKGCVEMVRLLLSYGA 135
G ++ LL A
Sbjct: 151 --GDTDIQDLLRGDAA 164
Score = 63.9 bits (157), Expect = 4e-13
Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 10/97 (10%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
L +AA+ G VE V+ L + + S PLH AA V +V LL +G
Sbjct: 11 QLLEAAKAGDVETVKKLCTVQSVNCRDIE-----GRQSTPLHFAAGYNRVSVVEYLLQHG 65
Query: 174 ADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
AD G PL E L++ H A V
Sbjct: 66 ADVHAKDKGGLVPLHNACSYGHYEVAELLVK-HGAVV 101
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 129 bits (327), Expect = 5e-36
Identities = 46/226 (20%), Positives = 69/226 (30%), Gaps = 45/226 (19%)
Query: 21 VINKHHGETPLHRAARLGYIDAVAYCLEKF-----SHGPAP--KDNAGYTPLHEAASHGW 73
+I+ H T LH A + + + G D TPL A
Sbjct: 119 IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARR 178
Query: 74 LDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL-------------------P 114
+ L+ GADP+ LH AA M+ +
Sbjct: 179 RRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTA 238
Query: 115 LHDAAEKGC---VEMVRLLLSYGADPLLASYAVYFLSLPSR------PLHDAAEKGCVEM 165
L A V +LL+ GA A S LH AA+ + +
Sbjct: 239 LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA----RKDSEKYKGRTALHYAAQVSNMPI 294
Query: 166 VRLLLS-YGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
V+ L+ G++ G TP+ + + E L+Q A V
Sbjct: 295 VKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ-QGASV 339
Score = 122 bits (308), Expect = 3e-33
Identities = 38/203 (18%), Positives = 59/203 (29%), Gaps = 46/203 (22%)
Query: 8 DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNA 60
V GA+ + LH+AA + Y L D
Sbjct: 180 RLVAYLMKAGAD-----PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRN 234
Query: 61 GYTPLHEAASHGWLD---IARLLLMYGADPSDSAIG--------GIRPLHDAAEKGCVEM 109
G T L A + D A+LL+ GA G LH AA+ + +
Sbjct: 235 GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPI 294
Query: 110 VRLL-----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR 152
V+ L P+ AA++G +E+V L+ GA +
Sbjct: 295 VKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDH------T 348
Query: 153 PLHDAAEKGCVEMVRLLLSYGAD 175
A +V + +
Sbjct: 349 ARQLAQANNHHNIVDIFDRCRPE 371
Score = 119 bits (300), Expect = 4e-32
Identities = 40/225 (17%), Positives = 57/225 (25%), Gaps = 60/225 (26%)
Query: 24 KHHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLL 81
+H+ P + G + ++ P + LH A G I +
Sbjct: 58 QHYSLYPNPQGYGNGNDFLGDFNH---TNLQIPTEPEPESPIKLHTEA-AGSYAITEPIT 113
Query: 82 MYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------------------------PLHD 117
+ D LH A E L PL
Sbjct: 114 RESVNIIDPR-HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLML 172
Query: 118 AAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR-------PLHDAAEKGCVEMVRLLL 170
A +V L+ GAD P+ LH AA M+ +L
Sbjct: 173 AVLARRRRLVAYLMKAGAD-------------PTIYNKSERSALHQAAANRDFGMMVYML 219
Query: 171 S---YGADPLLASYAGHTPLSITSDE------TTRKLLQYHLADV 206
+ D G T L I + + KLL A V
Sbjct: 220 NSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV 264
Score = 111 bits (279), Expect = 5e-29
Identities = 32/207 (15%), Positives = 57/207 (27%), Gaps = 42/207 (20%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
+ L A+ GYI + P + +G +
Sbjct: 37 SQHSLLEASYDGYIKRQRNE----------LQHYSLYPNPQGYGNGNDFLGDFNHTNLQI 86
Query: 87 PSDSAIGGIRPLHDAAEKGCVEMVRLL---------------PLHDAAEKGCVEMVRLLL 131
P++ LH A G + + LH A E L+
Sbjct: 87 PTEPEPESPIKLHTEA-AGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLI 145
Query: 132 SYGADPLLASYAVYFLSLPSR------PLHDAAEKGCVEMVRLLLSYGADPLLASYAGHT 185
+ A +A+ A + + PL A +V L+ GADP + + + +
Sbjct: 146 VHEAKECIAAGA----DVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERS 201
Query: 186 PLSITSD----ETTRKLLQYHL--ADV 206
L + +L D+
Sbjct: 202 ALHQAAANRDFGMMVYMLNSTKLKGDI 228
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 123 bits (311), Expect = 1e-35
Identities = 41/172 (23%), Positives = 65/172 (37%), Gaps = 39/172 (22%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMYG 84
L AA G ++ + L + ++ G T L G +IAR LL+ G
Sbjct: 5 WGNELASAAARGDLEQLTSLL---QNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRG 60
Query: 85 ADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVR 128
A+P G +HDAA G ++ ++ L PLH AA++G + +V
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 129 LLLSYGADPLLASYAVYFLSLPSR------PLHDAAEKGCVEMVRLLLSYGA 174
L+ + A + R A G E+V L+ + GA
Sbjct: 121 FLVKHTASNVGH-----------RNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 105 bits (264), Expect = 9e-29
Identities = 38/152 (25%), Positives = 57/152 (37%), Gaps = 33/152 (21%)
Query: 8 DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNA 60
+ + +N G T L +LG + L G P KD
Sbjct: 19 EQLTSLLQNNVN-----VNAQNGFGRTALQ-VMKLGNPEIARRLL---LRGANPDLKDRT 69
Query: 61 GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------- 113
G+ +H+AA G+LD + LL + AD + G PLH AA++G + +V L
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 114 ----------PLHDAAEKGCVEMVRLLLSYGA 135
A G E+V L+ + GA
Sbjct: 130 VGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 84.7 bits (211), Expect = 7e-21
Identities = 30/121 (24%), Positives = 44/121 (36%), Gaps = 18/121 (14%)
Query: 8 DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP---KDN 59
+ GA + G +H AAR G++D + L A +DN
Sbjct: 51 EIARRLLLRGAN-----PDLKDRTGFAVIHDAARAGFLDTLQTLL---EFQ-ADVNIEDN 101
Query: 60 AGYTPLHEAASHGWLDIARLLLMYGA-DPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDA 118
G PLH AA G L + L+ + A + G A G E+V L+ + A
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Query: 119 A 119
Sbjct: 162 G 162
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 122 bits (308), Expect = 1e-35
Identities = 44/134 (32%), Positives = 64/134 (47%), Gaps = 22/134 (16%)
Query: 22 INK-HHGETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNAGYTPLHEAASHGWLDIAR 78
H GET LH A+ G I +V Y L +G P KD+AG+TPLHEA +HG L +
Sbjct: 4 PFTNHRGETLLHIASIKGDIPSVEYLL---QNGSDPNVKDHAGWTPLHEACNHGHLKVVE 60
Query: 79 LLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKG 122
LLL + A + + PLHDAA+ G V++V+LL P+ ++
Sbjct: 61 LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDES 120
Query: 123 CVEMVRLLLSYGAD 136
++ L +
Sbjct: 121 MKSLLLLPEKNESS 134
Score = 105 bits (265), Expect = 3e-29
Identities = 46/147 (31%), Positives = 65/147 (44%), Gaps = 23/147 (15%)
Query: 57 KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLH 116
++ G T LH A+ G + LL G+DP + G PLH
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDP-----------NVKDHAGWT------PLH 48
Query: 117 DAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADP 176
+A G +++V LLL + A Y PLHDAA+ G V++V+LLLSYGA
Sbjct: 49 EACNHGHLKVVELLLQHKALVNTTGYQND------SPLHDAAKNGHVDIVKLLLSYGASR 102
Query: 177 LLASYAGHTPLSITSDETTRKLLQYHL 203
+ G P+ T DE+ + LL
Sbjct: 103 NAVNIFGLRPVDYTDDESMKSLLLLPE 129
Score = 50.1 bits (121), Expect = 3e-08
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 153 PLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
LH A+ KG + V LL G+DP + +AG TPL + + LLQ H A V
Sbjct: 13 LLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ-HKALV 69
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 122 bits (309), Expect = 1e-35
Identities = 43/170 (25%), Positives = 59/170 (34%), Gaps = 46/170 (27%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMYG 84
L AAR G D V + ++G AP D G +PLH AA +G +LL G
Sbjct: 2 LGKKLLEAARAGQDDEVRILM---ANG-APFTTDWLGTSPLHLAAQYGHFSTTEVLLRAG 57
Query: 85 ADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVR 128
PLH AA +G +V +L LH A E E+V
Sbjct: 58 VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE 117
Query: 129 LLLSYGADPLLASYAVYFLSLPSR---------PLHDAAEKGCVEMVRLL 169
LL+ YGAD + + G ++ +L
Sbjct: 118 LLIKYGADV---------------HTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 103 bits (259), Expect = 5e-28
Identities = 37/145 (25%), Positives = 54/145 (37%), Gaps = 30/145 (20%)
Query: 8 DTVE---DVGAEVRSWVINK-HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAG 61
D V GA G +PLH AA+ G+ L G + +
Sbjct: 16 DEVRILMANGAP-----FTTDWLGTSPLHLAAQYGHFSTTEVLL---RAGVSRDARTKVD 67
Query: 62 YTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL-------- 113
TPLH AAS G +I +LL +GAD + + + LH A E E+V LL
Sbjct: 68 RTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH 127
Query: 114 --------PLHDAAEKGCVEMVRLL 130
+ + G ++ +L
Sbjct: 128 TQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 90.9 bits (227), Expect = 2e-23
Identities = 39/150 (26%), Positives = 53/150 (35%), Gaps = 29/150 (19%)
Query: 61 GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAE 120
L EAA G D R+L+ GA G PLH AA+
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPF------------TTDWLGTS------PLHLAAQ 43
Query: 121 KGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLAS 180
G +LL G + PLH AA +G +V +LL +GAD
Sbjct: 44 YGHFSTTEVLLRAGVSRDARTKVDR------TPLHMAASEGHANIVEVLLKHGADVNAKD 97
Query: 181 YAGHTPLSITSD----ETTRKLLQYHLADV 206
T L ++ E L++ + ADV
Sbjct: 98 MLKMTALHWATEHNHQEVVELLIK-YGADV 126
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 122 bits (307), Expect = 2e-34
Identities = 59/208 (28%), Positives = 88/208 (42%), Gaps = 34/208 (16%)
Query: 22 INK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP---KDNAGYTPLHEAASHGWLDI 76
+ T LH A G+ + V + L G P KD+AG++PLH AAS G +I
Sbjct: 33 ATRTDQDSRTALHWACSAGHTEIVEFLL---QLG-VPVNDKDDAGWSPLHIAASAGXDEI 88
Query: 77 ARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAE 120
+ LL+ GA + G PLH AA K E+ +L +H AA
Sbjct: 89 VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148
Query: 121 KGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLAS 180
KG ++MV +LL Y A + + + PLH A ++ VE + L++ GA + +
Sbjct: 149 KGNLKMVHILLFYKASTNIQD------TEGNTPLHLACDEERVEEAKFLVTQGASIYIEN 202
Query: 181 YAGHTPLSITSD--ETTRKLLQYHLADV 206
TPL + K L +
Sbjct: 203 KEEKTPLQVAKGGLGLILKRLA-EGEEA 229
Score = 113 bits (283), Expect = 6e-31
Identities = 53/196 (27%), Positives = 76/196 (38%), Gaps = 27/196 (13%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMYG 84
+ A + L + D T LH A S G +I LL G
Sbjct: 7 NIMICNLAYSGKLDELKERIL---ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63
Query: 85 ADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVR 128
+D G PLH AA G E+V+ L PLH AA K E+
Sbjct: 64 VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAV 123
Query: 129 LLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLS 188
+LL GA+P + + +H AA KG ++MV +LL Y A + G+TPL
Sbjct: 124 MLLEGGANPDAKDHY------DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLH 177
Query: 189 ITSDETTRKLLQYHLA 204
+ DE + ++ +
Sbjct: 178 LACDEERVEEAKFLVT 193
Score = 101 bits (253), Expect = 1e-26
Identities = 37/164 (22%), Positives = 58/164 (35%), Gaps = 22/164 (13%)
Query: 57 KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL--- 113
+ + A S ++ +L + + + LH A G E+V L
Sbjct: 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL 62
Query: 114 -------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEK 160
PLH AA G E+V+ LL GA + PLH AA K
Sbjct: 63 GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGC------TPLHYAASK 116
Query: 161 GCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLA 204
E+ +LL GA+P + T + + + K++ L
Sbjct: 117 NRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF 160
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 117 bits (295), Expect = 4e-33
Identities = 34/183 (18%), Positives = 47/183 (25%), Gaps = 38/183 (20%)
Query: 16 EVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGW 73
EV + ++ G + G+ + A + TP AA
Sbjct: 1 EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSY---IA-ADVVSEYETPWWTAARKAD 56
Query: 74 LDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL-----------------PLH 116
LL D G L A G + VRLL LH
Sbjct: 57 EQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALH 115
Query: 117 DAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR----PLHDAAEKGCVEMVRLLLSY 172
AA E+V L+ GAD + L A E + +
Sbjct: 116 MAAGYVRPEVVEALVELGADI----------EVEDERGLTALELAREILKTTPKGNPMQF 165
Query: 173 GAD 175
G
Sbjct: 166 GRR 168
Score = 111 bits (281), Expect = 5e-31
Identities = 36/177 (20%), Positives = 46/177 (25%), Gaps = 35/177 (19%)
Query: 57 KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL--- 113
G G AD P AA K + + L
Sbjct: 10 TAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLLED 66
Query: 114 ------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR----PLHDA 157
L A G + VRLL GAD R LH A
Sbjct: 67 RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD---------MRGGLTALHMA 117
Query: 158 AEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD---ETTRKLLQYHLADVRGHEA 211
A E+V L+ GAD + G T L + + T + + G E
Sbjct: 118 AGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRI-GLEK 173
Score = 89.5 bits (223), Expect = 2e-22
Identities = 24/111 (21%), Positives = 35/111 (31%), Gaps = 7/111 (6%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEKFSHGP---APKDNAGYTPLHEAASHGWLDIARLLLM 82
+G T L A LG V G G T LH AA + ++ L+
Sbjct: 75 NGRTALLFVAGLGSDKCVRLLA---EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE 131
Query: 83 YGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSY 133
GAD G+ L A E + G +++ +L
Sbjct: 132 LGADIEVEDERGLTALELAREILKTTPKGNP-MQFGRRIGLEKVINVLEGQ 181
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 118 bits (299), Expect = 5e-33
Identities = 36/184 (19%), Positives = 50/184 (27%), Gaps = 39/184 (21%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMYG 84
ETP AAR A++ L D G T L A G RLL G
Sbjct: 45 YETPWWTAARKADEQALSQLL----EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG 100
Query: 85 ADP-SDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMV 127
AD GG+ LH AA E+V L L A E
Sbjct: 101 ADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPK 160
Query: 128 RLLLSYGADP------LLASYAVYFLSLPSR----------PLHDAAEKGCVEMVRLLLS 171
+ +G + V+ + + K + +
Sbjct: 161 GNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGV 220
Query: 172 YGAD 175
+ A+
Sbjct: 221 HVAE 224
Score = 114 bits (288), Expect = 2e-31
Identities = 33/192 (17%), Positives = 45/192 (23%), Gaps = 44/192 (22%)
Query: 25 HHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG 84
G + G+ + A + TP AA LL
Sbjct: 13 GEGAMEYLIEWKDGHSPSWVPSS---YIA-ADVVSEYETPWWTAARKADEQALSQLL-ED 67
Query: 85 ADPSDSAIGGIRPLHDAAEKGCVEMVRLL-----------------PLHDAAEKGCVEMV 127
D G L A G + VRLL LH AA E+V
Sbjct: 68 RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVV 127
Query: 128 RLLLSYGADPLLASYAVYFLSLPSR----PLHDAAEKGCVEMVRLLLSYGADP------- 176
L+ GAD + L A E + +G
Sbjct: 128 EALVELGADI----------EVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVIN 177
Query: 177 -LLASYAGHTPL 187
L + +
Sbjct: 178 VLEGQVFEYAEV 189
Score = 111 bits (279), Expect = 4e-30
Identities = 36/198 (18%), Positives = 47/198 (23%), Gaps = 46/198 (23%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
GE +R G G AD
Sbjct: 1 GEVNKIIGSR--------------------TAGEGAMEYLIEWKDGHSPSWVPSSYIAAD 40
Query: 87 PSDSAIGGIRPLHDAAEKGCVEMVRLL---------------PLHDAAEKGCVEMVRLLL 131
P AA K + + L L A G + VRLL
Sbjct: 41 VVSE---YETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLA 97
Query: 132 SYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITS 191
GAD LH AA E+V L+ GAD + G T L +
Sbjct: 98 EAGADLDHRDMRGGL-----TALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 152
Query: 192 D---ETTRKLLQYHLADV 206
+ T + +
Sbjct: 153 EILKTTPKGNPMQFGRRI 170
Score = 93.1 bits (232), Expect = 3e-23
Identities = 23/169 (13%), Positives = 46/169 (27%), Gaps = 29/169 (17%)
Query: 8 DTVE---DVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGY 62
V + GA++ + G T LH AA + V + G +D G
Sbjct: 91 KCVRLLAEAGADLDH--RDMRGGLTALHMAAGYVRPEVVEALV---ELGADIEVEDERGL 145
Query: 63 TPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL--------P 114
T L A + +G + + + E+ ++
Sbjct: 146 TALELAREILKTTPKGNPMQFGRRIGLEKV---INVLEGQVFEYAEVDEIVEKRGKGKDV 202
Query: 115 LHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCV 163
+ K + + + A+ + Y L A + +
Sbjct: 203 EYLVRWKDGGDCEWVKGVHVAEDVAKDY--------EDGLEYAVAESVI 243
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 114 bits (288), Expect = 2e-32
Identities = 34/159 (21%), Positives = 53/159 (33%), Gaps = 29/159 (18%)
Query: 52 HGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVR 111
L AA+ G ++ R LL GA+P+ G RP+ G +
Sbjct: 3 PAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAE 61
Query: 112 LL-----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPL 154
LL P+HDAA +G ++ + +L GA + P+
Sbjct: 62 LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR------LPV 115
Query: 155 HDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDE 193
A E G ++ R L + G I + E
Sbjct: 116 DLAEELGHRDVARYLRAAAGGT-----RGSNHARIDAAE 149
Score = 109 bits (274), Expect = 3e-30
Identities = 36/165 (21%), Positives = 62/165 (37%), Gaps = 36/165 (21%)
Query: 22 INKHHGETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNAGYTPLHEAASHGWLDIARL 79
+ L AA G ++ V L G P ++ G P+ G +A L
Sbjct: 7 SSMEPSADWLATAAARGRVEEVRALL---EAGANPNAPNSYGRRPIQ-VMMMGSARVAEL 62
Query: 80 LLMYGADP--SDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEK 121
LL++GA+P +D A RP+HDAA +G ++ + +L P+ A E
Sbjct: 63 LLLHGAEPNCADPA-TLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL 121
Query: 122 GCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMV 166
G ++ R L + ++ A +G ++
Sbjct: 122 GHRDVARYLRAAAGGTRGSN-----------HARIDAAEGPSDIP 155
Score = 86.4 bits (215), Expect = 1e-21
Identities = 33/139 (23%), Positives = 47/139 (33%), Gaps = 28/139 (20%)
Query: 8 DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNA 60
+ V + GA N +G P+ G L HG P D A
Sbjct: 26 EEVRALLEAGANP-----NAPNSYGRRPIQVMMM-GSARVAELLL---LHGAEPNCADPA 76
Query: 61 GYT-PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------ 113
T P+H+AA G+LD +L GA G P+ A E G ++ R L
Sbjct: 77 TLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG 136
Query: 114 -----PLHDAAEKGCVEMV 127
A +G ++
Sbjct: 137 TRGSNHARIDAAEGPSDIP 155
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 113 bits (285), Expect = 3e-32
Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 24/136 (17%)
Query: 57 KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL--- 113
+ L AA+ G ++ R LL GADP+ G RP+ G ++ LL
Sbjct: 8 LGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLH 66
Query: 114 --------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAE 159
P+HDAA +G ++ + +L GA + P+ A E
Sbjct: 67 GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGR------LPVDLAEE 120
Query: 160 KGCVEMVRLLLSYGAD 175
+G ++ R L + D
Sbjct: 121 QGHRDIARYLHAATGD 136
Score = 105 bits (266), Expect = 2e-29
Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 27/137 (19%)
Query: 22 INKH--HGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIA 77
I+ + L AA G ++ V L G P + G P+ G +A
Sbjct: 5 IHMLGGSSDAGLATAAARGQVETVRQLL---EAGADPNALNRFGRRPIQ-VMMMGSAQVA 60
Query: 78 RLLLMYGADP--SDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAA 119
LLL++GA+P +D A RP+HDAA +G ++ + +L P+ A
Sbjct: 61 ELLLLHGAEPNCADPA-TLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAE 119
Query: 120 EKGCVEMVRLLLSYGAD 136
E+G ++ R L + D
Sbjct: 120 EQGHRDIARYLHAATGD 136
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 113 bits (285), Expect = 7e-32
Identities = 43/182 (23%), Positives = 64/182 (35%), Gaps = 32/182 (17%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNAGYTPLHEAASHGWLDIARLLLMYG 84
L AA G + V L P + G T L G IA LL G
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLH--RELVHPDALNRFGKTALQ-VMMFGSTAIALELLKQG 58
Query: 85 ADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAV 144
A P + G P+HDAA G ++ +++L+ +GAD +
Sbjct: 59 ASP-----------NVQDTSGTS------PVHDAARTGFLDTLKVLVEHGADVNVPDGTG 101
Query: 145 YFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDE---TTRKLLQY 201
P+H A ++G +V L + +D G TPL + +LQ
Sbjct: 102 A------LPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
Query: 202 HL 203
H+
Sbjct: 155 HM 156
Score = 101 bits (254), Expect = 3e-27
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 21/124 (16%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMY 83
G+T L G L G +P +D +G +P+H+AA G+LD ++L+ +
Sbjct: 35 FGKTALQVMMF-GSTAIALELL---KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEH 90
Query: 84 GADPSDSAIGGIRPLHDAAEKGCVEMVRLL---------------PLHDAAEKGCVEMVR 128
GAD + G P+H A ++G +V L PL A ++G ++V
Sbjct: 91 GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVD 150
Query: 129 LLLS 132
+L
Sbjct: 151 ILQG 154
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 113 bits (284), Expect = 6e-31
Identities = 31/199 (15%), Positives = 49/199 (24%), Gaps = 31/199 (15%)
Query: 14 GAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASH 71
R + + L AA G ++ V + P + G T LH A
Sbjct: 8 AGSPRKARRARLNPLVLLLDAALTGELEVVQQAV---KEMNDPSQPNEEGITALHNAICG 64
Query: 72 GWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL-----------------P 114
I L+ GA+ + G PLH AA + L
Sbjct: 65 ANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATA 124
Query: 115 LHDAA--EKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSY 172
+G + L L + + L D + + E +
Sbjct: 125 FEKCDPYREGYADCATYLADVEQSMGLMNSGAVY------ALWDYSAEFGDE-LSFREGE 177
Query: 173 GADPLLASYAGHTPLSITS 191
L T +
Sbjct: 178 SVTVLRRDGPEETDWWWAA 196
Score = 70.0 bits (172), Expect = 1e-14
Identities = 30/151 (19%), Positives = 41/151 (27%), Gaps = 34/151 (22%)
Query: 8 DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGP---APKDN 59
V+ GA +N HG TPLH AA + HG A +
Sbjct: 68 SIVDFLITAGAN-----VNSPDSHGWTPLHCAASCNDTVICMALV---QHGAAIFATTLS 119
Query: 60 AGYTPLHEAASH--GWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---- 113
G T + + G+ D A L G + L D + + E+
Sbjct: 120 DGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESV 179
Query: 114 -----------PLHDAAEKGCVEMV-RLLLS 132
AA G V R
Sbjct: 180 TVLRRDGPEETDWWWAALHGQEGYVPRNYFG 210
Score = 53.8 bits (130), Expect = 5e-09
Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 8/84 (9%)
Query: 127 VRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTP 186
+R +L P A A P L DAA G +E+V+ + DP + G T
Sbjct: 1 MRSVLRKAGSPRKARRARLN---PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITA 57
Query: 187 LSITSD----ETTRKLLQYHLADV 206
L L+ A+V
Sbjct: 58 LHNAICGANYSIVDFLIT-AGANV 80
Score = 42.2 bits (100), Expect = 4e-05
Identities = 16/94 (17%), Positives = 22/94 (23%), Gaps = 16/94 (17%)
Query: 12 DVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHG----PAPKDNAGYTPLHE 67
DV + + L + + D + F G +D T
Sbjct: 144 DVEQSMG---LMNSGAVYALWDYSA-EFGDEL-----SFREGESVTVLRRDGPEETDWWW 194
Query: 68 AASHGWLDI-ARLLLMYGADPSDSAIGGIRPLHD 100
AA HG R G P H
Sbjct: 195 AALHGQEGYVPRNYF--GLFPRVKPQRSKVKHHH 226
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 107 bits (271), Expect = 4e-30
Identities = 54/129 (41%), Positives = 69/129 (53%), Gaps = 23/129 (17%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEKFSHGPA---PKDNAGYTPLHEAASHGWLDIARLLLM 82
+G TPLH AAR G+++ V L G A KD G TPLH AA +G L++ +LLL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL---EAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 56
Query: 83 YGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEM 126
GAD + G PLH AA G +E+V+LL PLH AA G +E+
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 116
Query: 127 VRLLLSYGA 135
V+LLL GA
Sbjct: 117 VKLLLEAGA 125
Score = 107 bits (269), Expect = 7e-30
Identities = 53/130 (40%), Positives = 67/130 (51%), Gaps = 22/130 (16%)
Query: 61 GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------- 113
G TPLH AA +G L++ +LLL GAD + G PLH AA G +E+V+LL
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 114 ---------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVE 164
PLH AA G +E+V+LLL GAD PLH AA G +E
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR------TPLHLAARNGHLE 115
Query: 165 MVRLLLSYGA 174
+V+LLL GA
Sbjct: 116 VVKLLLEAGA 125
Score = 64.7 bits (159), Expect = 9e-14
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 17/86 (19%)
Query: 8 DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP---KDN 59
+ V+ + GA+ +N +G TPLH AAR G+++ V L G A KD
Sbjct: 49 EVVKLLLEAGAD-----VNAKDKNGRTPLHLAARNGHLEVVKLLL---EAG-ADVNAKDK 99
Query: 60 AGYTPLHEAASHGWLDIARLLLMYGA 85
G TPLH AA +G L++ +LLL GA
Sbjct: 100 NGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 47.0 bits (113), Expect = 3e-07
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 153 PLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
PLH AA G +E+V+LLL GAD G TPL + + E + LL+ ADV
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADV 61
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 106 bits (268), Expect = 1e-29
Identities = 40/142 (28%), Positives = 57/142 (40%), Gaps = 31/142 (21%)
Query: 14 GAEVRSWVINKHHG---ETPLHRAARLGYIDAVAYCLEKFSHGPAP---KDNAGYTPLHE 67
G+ + HHG L AAR G D V + ++G A KD G TPL+
Sbjct: 3 GSH-----HHHHHGSDLGKKLLEAARAGQDDEVRILM---ANG-ADVNAKDEYGLTPLYL 53
Query: 68 AASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL-------------- 113
A +HG L+I +LL GAD + G PLH AA G +E+ +L
Sbjct: 54 ATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFG 113
Query: 114 --PLHDAAEKGCVEMVRLLLSY 133
+ G ++ +L
Sbjct: 114 KTAFDISIGNGNEDLAEILQKL 135
Score = 87.1 bits (217), Expect = 4e-22
Identities = 42/156 (26%), Positives = 60/156 (38%), Gaps = 32/156 (20%)
Query: 51 SHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMV 110
HG + L EAA G D R+L+ GAD ++ E G
Sbjct: 9 HHG-----SDLGKKLLEAARAGQDDEVRILMANGAD-----------VNAKDEYGLT--- 49
Query: 111 RLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLL 170
PL+ A G +E+V +LL GAD + PLH AA G +E+ +LL
Sbjct: 50 ---PLYLATAHGHLEIVEVLLKNGADVNAVDAIGF------TPLHLAAFIGHLEIAEVLL 100
Query: 171 SYGADPLLASYAGHTPLSITSD----ETTRKLLQYH 202
+GAD G T I+ + L + +
Sbjct: 101 KHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136
Score = 86.7 bits (216), Expect = 7e-22
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 8 DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPA---PKDN 59
D V GA+ +N +G TPL+ A G+++ V L +G A D
Sbjct: 28 DEVRILMANGAD-----VNAKDEYGLTPLYLATAHGHLEIVEVLL---KNG-ADVNAVDA 78
Query: 60 AGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHD 117
G+TPLH AA G L+IA +LL +GAD + G + G ++ +L +
Sbjct: 79 IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136
Score = 44.7 bits (107), Expect = 2e-06
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 153 PLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
L +AA G + VR+L++ GAD G TPL + + E ++L + ADV
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIV-EVLLKNGADV 73
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 104 bits (261), Expect = 2e-27
Identities = 42/209 (20%), Positives = 63/209 (30%), Gaps = 44/209 (21%)
Query: 27 GETPLHRAA---RLGYIDAVAYCLEKFSHGPAP----------KDNAGYTPLHEAASHGW 73
G+T L +A + G + L+ P + G++ LH A
Sbjct: 43 GKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRS 102
Query: 74 LDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSY 133
L +LL+ GAD A G H E+ PL AA ++V LL
Sbjct: 103 LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGEL----PLSLAACTKQWDVVTYLLEN 158
Query: 134 GAD-------------PLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLAS 180
L A + S + L G ++M L +++
Sbjct: 159 PHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISN 218
Query: 181 YAGHTPLSITSDETTRKLLQYHLADVRGH 209
+ G TPL LA G
Sbjct: 219 HQGLTPL--------------KLAAKEGK 233
Score = 101 bits (253), Expect = 3e-26
Identities = 40/208 (19%), Positives = 60/208 (28%), Gaps = 40/208 (19%)
Query: 27 GETPLHRAARLGYIDAVAYCLEKFSHGPAP-------KDNAGYTPLHEAASH---GWLDI 76
L G + + LE + + G T L +A + G
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 77 ARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGAD 136
LL D + D +G LH A EK ++ V+LL+ GAD
Sbjct: 62 IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHS------ALHIAIEKRSLQCVKLLVENGAD 115
Query: 137 PLLASYAVYFLSLPSR-------PLHDAAEKGCVEMVRLLLSYG---ADPLLASYAGHTP 186
L + +F PL AA ++V LL A G+T
Sbjct: 116 VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTV 175
Query: 187 LSITSDETTRKLLQYHLADVRGHEAPKW 214
L H + +P+
Sbjct: 176 L--------------HALVMIADNSPEN 189
Score = 97.9 bits (244), Expect = 6e-25
Identities = 31/167 (18%), Positives = 48/167 (28%), Gaps = 22/167 (13%)
Query: 25 HHGETPLHRAARLGYIDAVAYCLEK------------FSHGPAPKDNAGYTPLHEAASHG 72
+ G + LH A + V +E F G PL AA
Sbjct: 88 YQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTK 147
Query: 73 WLDIARLLL---MYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRL 129
D+ LL A + G LH L G ++M
Sbjct: 148 QWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENS-ALVIHMYDGLLQMGAR 206
Query: 130 LLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADP 176
L ++++ PL AA++G +E+ R +L
Sbjct: 207 LCPTVQLEEISNHQGL------TPLKLAAKEGKIEIFRHILQREFSG 247
Score = 58.6 bits (142), Expect = 1e-10
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 5/69 (7%)
Query: 23 NKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLL 80
+ + L G + A ++ G TPL AA G ++I R +
Sbjct: 184 DNSPENSALVIHMYDGLLQMGARLC---PTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240
Query: 81 LMYGADPSD 89
L +
Sbjct: 241 LQREFSGAA 249
Score = 35.9 bits (83), Expect = 0.006
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 25 HHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGY 62
H G TPL AA+ G I+ + L++ G A + +
Sbjct: 219 HQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHHHH 256
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 102 bits (257), Expect = 1e-26
Identities = 36/222 (16%), Positives = 56/222 (25%), Gaps = 60/222 (27%)
Query: 23 NKHHGETPLHRA---ARLGYIDAVAYCLEKFSHGPAP----------KDNAGYTPLHEAA 69
+ G+T L +A G D +A L+ + G T LH A
Sbjct: 50 DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAI 109
Query: 70 SHGWLDIARLLLMYGAD--------------PSDSAIGGIRPLHDAAEKGCVEMVRLL-- 113
+ + LL+ GAD G PL AA + +V+ L
Sbjct: 110 ERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ 169
Query: 114 -----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR---- 152
LH E + +
Sbjct: 170 NSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEIT 229
Query: 153 ------PLHDAAEKGCVEMVRLLLSYGAD---PL-LASYAGH 184
PL AA G + ++ +L A++ H
Sbjct: 230 NRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHH 271
Score = 99.5 bits (248), Expect = 2e-25
Identities = 39/191 (20%), Positives = 57/191 (29%), Gaps = 27/191 (14%)
Query: 24 KHHGETPLHRAARLGYIDAVAYCLEKF----SHGP---APKDNAGYTPLHEAASH---GW 73
+ + + A + L G T L +A + G
Sbjct: 10 RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ 69
Query: 74 LDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSY 133
D LLL D+ KG LH A E+ + +V LL+
Sbjct: 70 NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQT------ALHIAIERRNMTLVTLLVEN 123
Query: 134 GADPLLASYAVYFLSLPSR--------PLHDAAEKGCVEMVRLLLSYG---ADPLLASYA 182
GAD A+ +F R PL AA + +V+ LL AD
Sbjct: 124 GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSV 183
Query: 183 GHTPLSITSDE 193
G+T L +
Sbjct: 184 GNTVLHALVEV 194
Score = 69.8 bits (171), Expect = 2e-14
Identities = 32/177 (18%), Positives = 50/177 (28%), Gaps = 52/177 (29%)
Query: 83 YGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------------------------PLHDA 118
A + R + DA + + + L L A
Sbjct: 2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61
Query: 119 ---AEKGCVEMVRLLLSYGADPLLASYAV--YFLSLPSR---PLHDAAEKGCVEMVRLLL 170
G + + LLL V + + LH A E+ + +V LL+
Sbjct: 62 MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV 121
Query: 171 SYGAD--------------PLLASYAGHTPLSITS----DETTRKLLQ--YHLADVR 207
GAD Y G PLS+ + + LLQ + AD+
Sbjct: 122 ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADIS 178
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 96.7 bits (242), Expect = 6e-26
Identities = 40/146 (27%), Positives = 55/146 (37%), Gaps = 23/146 (15%)
Query: 55 APKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLP 114
P + A +G LD + + G D + E G P
Sbjct: 1 GPLGSMCDKEFMWALKNGDLDEVKDYVAKGEDV-----------NRTLEGGRK------P 43
Query: 115 LHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGA 174
LH AA+ G +E++ LL GAD PL A +G V V+LLLS GA
Sbjct: 44 LHYAADCGQLEILEFLLLKGADINAPDKHHIT------PLLSAVYEGHVSCVKLLLSKGA 97
Query: 175 DPLLASYAGHTPLSITSDETTRKLLQ 200
D + G T T ++ + LLQ
Sbjct: 98 DKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 94.4 bits (236), Expect = 4e-25
Identities = 28/121 (23%), Positives = 42/121 (34%), Gaps = 21/121 (17%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMY 83
+ A + G +D V + + G G PLH AA G L+I LL+
Sbjct: 6 MCDKEFMWALKNGDLDEVKDYV---AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62
Query: 84 GADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMV 127
GAD + I PL A +G V V+LL + ++
Sbjct: 63 GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122
Query: 128 R 128
+
Sbjct: 123 Q 123
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 98.7 bits (246), Expect = 4e-25
Identities = 42/185 (22%), Positives = 56/185 (30%), Gaps = 27/185 (14%)
Query: 24 KHHGETPLHRAARLGYIDAVAYCLEKF-SHG------PAPKDNAGYTPLHEAA---SHGW 73
K L G D + L +H + + G T L +A S G
Sbjct: 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGR 61
Query: 74 LDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSY 133
D +LL + P D +G LH A E+ C V LL+
Sbjct: 62 NDTIPILLDIAEKTGNMREFINSPFRDVYYRGQT------ALHIAIERRCKHYVELLVEK 115
Query: 134 GADPLLASYAVYFLSLPSR--------PLHDAAEKGCVEMVRLLLSYG---ADPLLASYA 182
GAD + +F PL AA +V L G AD
Sbjct: 116 GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSR 175
Query: 183 GHTPL 187
G+T L
Sbjct: 176 GNTVL 180
Score = 97.2 bits (242), Expect = 1e-24
Identities = 42/215 (19%), Positives = 58/215 (26%), Gaps = 56/215 (26%)
Query: 26 HGETPLHRAA---RLGYIDAVAYCLEKFSHGPAP----------KDNAGYTPLHEAASHG 72
G+T L +A G D + L+ G T LH A
Sbjct: 45 TGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERR 104
Query: 73 WLDIARLLLMYGADPSDSAIG--------------GIRPLHDAAEKGCVEMVRLL----- 113
LL+ GAD A G G PL AA +V L
Sbjct: 105 CKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH 164
Query: 114 --------------PLHDAAE---------KGCVEMVRLLLSYGADPLLASYAVYFLSLP 150
LH K +M LLL A + L+
Sbjct: 165 KQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNND 224
Query: 151 SR-PLHDAAEKGCVEMVRLLLSYGADPLLASYAGH 184
PL AA+ G + + + ++ A + H
Sbjct: 225 GLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHH 259
Score = 74.8 bits (184), Expect = 2e-16
Identities = 25/126 (19%), Positives = 39/126 (30%), Gaps = 27/126 (21%)
Query: 25 HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP-----KDNAGYTPLHEAASHG------- 72
+ GE PL AA V Y +G +D+ G T LH +
Sbjct: 138 YFGELPLSLAACTNQPHIVHYLT---ENGHKQADLRRQDSRGNTVLHALVAIADNTRENT 194
Query: 73 --WLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLL 130
+ LLL+ A +D L PL AA+ G + + + +
Sbjct: 195 KFVTKMYDLLLIKCAKLFPDTNLEALLNND----------GLSPLMMAAKTGKIGIFQHI 244
Query: 131 LSYGAD 136
+
Sbjct: 245 IRREIA 250
Score = 35.1 bits (81), Expect = 0.012
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 5/55 (9%)
Query: 12 DVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLH 66
+ + + + G +PL AA+ G I + + D A + H
Sbjct: 210 KLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHII---RRE--IADAAAHHHHH 259
Score = 30.5 bits (69), Expect = 0.41
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 8/46 (17%)
Query: 152 RPLHDAAEKGCVE----MVRLLLSYGAD----PLLASYAGHTPLSI 189
L D +G + ++ LL++ G T L
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPK 52
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 96.7 bits (241), Expect = 4e-25
Identities = 24/185 (12%), Positives = 40/185 (21%), Gaps = 37/185 (20%)
Query: 23 NKHHGETPLHRAARLGYIDAVAYCLEK--FSHGPAPKDNAGYTPLHEAASHGWLDIARLL 80
N + AA LG + EK K N Y L I+ L
Sbjct: 2 NAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFL 61
Query: 81 LMYGADPSDSAIGGIRPLHDAAEKG------CVEMVRLL----------------PLHDA 118
+ GAD G + G E+ ++ +
Sbjct: 62 INKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKN 121
Query: 119 AEKGCVEMVR-------LLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLS 171
V+ + G L+ L ++++
Sbjct: 122 IFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGL------TALEFVKRCQKPIALKMMED 175
Query: 172 YGADP 176
Y
Sbjct: 176 YIKKY 180
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 94.0 bits (235), Expect = 6e-25
Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 16/97 (16%)
Query: 57 KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL--- 113
G TPLH AA +G + + LL GAD + + G PLH AA+ G E+V+LL
Sbjct: 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 114 -------------PLHDAAEKGCVEMVRLLLSYGADP 137
P H A + G E+V+LL + GAD
Sbjct: 65 GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV 101
Score = 71.6 bits (177), Expect = 2e-16
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 15/99 (15%)
Query: 8 DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNA 60
+ V+ GA+ +N G TPLH AA+ G+ + V L + G +
Sbjct: 23 EEVKKLLSKGAD-----VNARSKDGNTPLHLAAKNGHAEIVKLLL---AKGADVNARSKD 74
Query: 61 GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLH 99
G TP H A +G +I +LL GAD + + G H
Sbjct: 75 GNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 47.0 bits (113), Expect = 2e-07
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 153 PLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
PLH+AA+ G E V+ LLS GAD S G+TPL + + E + LL ADV
Sbjct: 12 PLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA-KGADV 68
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 84.7 bits (211), Expect = 1e-21
Identities = 39/91 (42%), Positives = 50/91 (54%), Gaps = 16/91 (17%)
Query: 61 GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------- 113
G TPLH AA +G L++ +LLL GAD + G PLH AA G +E+V+LL
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 114 ---------PLHDAAEKGCVEMVRLLLSYGA 135
PLH AA G +E+V+LLL GA
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 82.8 bits (206), Expect = 7e-21
Identities = 40/90 (44%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNAGYTPLHEAASHGWLDIARLLLMY 83
+G TPLH AAR G+++ V L G KD G TPLH AA +G L++ +LLL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL---EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 84 GADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
GAD + G PLH AA G +E+V+LL
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 65.8 bits (162), Expect = 1e-14
Identities = 32/78 (41%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
PLH AA G +E+V+LLL GAD PLH AA G +E+V+LLL G
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGR------TPLHLAARNGHLEVVKLLLEAG 58
Query: 174 ADPLLASYAGHTPLSITS 191
AD G TPL + +
Sbjct: 59 ADVNAKDKNGRTPLHLAA 76
Score = 63.9 bits (157), Expect = 8e-14
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 15/85 (17%)
Query: 8 DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNA 60
+ V+ + GA+V N +G TPLH AAR G+++ V L G KD
Sbjct: 16 EVVKLLLEAGADV-----NAKDKNGRTPLHLAARNGHLEVVKLLL---EAGADVNAKDKN 67
Query: 61 GYTPLHEAASHGWLDIARLLLMYGA 85
G TPLH AA +G L++ +LLL GA
Sbjct: 68 GRTPLHLAARNGHLEVVKLLLEAGA 92
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 81.5 bits (202), Expect = 3e-20
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
Query: 8 DTVE---DVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNAGY 62
G+ + L AAR G D V + ++G A KD G
Sbjct: 8 HHSSGLVPRGSH-----MGSD-LGKKLLEAARAGQDDEVRILM---ANGADVAAKDKNGS 58
Query: 63 TPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
TPLH AA +G L++ +LLL GAD G + + G ++ +L
Sbjct: 59 TPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 81.1 bits (201), Expect = 5e-20
Identities = 33/134 (24%), Positives = 47/134 (35%), Gaps = 26/134 (19%)
Query: 68 AASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMV 127
+SH + L+ G+ L +AA G + V
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG--------------SDLGK------KLLEAARAGQDDEV 40
Query: 128 RLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPL 187
R+L++ GAD PLH AA G +E+V+LLL GAD G T
Sbjct: 41 RILMANGADVAAKDKNGS------TPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAF 94
Query: 188 SITSDETTRKLLQY 201
I+ D L +
Sbjct: 95 DISIDNGNEDLAEI 108
Score = 61.8 bits (151), Expect = 8e-13
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 14/101 (13%)
Query: 118 AAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPL 177
+ L+ G+ + L +AA G + VR+L++ GAD
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSDLG---------KKLLEAARAGQDDEVRILMANGADVA 51
Query: 178 LASYAGHTPLSITSD----ETTRKLLQYHLADVRGHEAPKW 214
G TPL + + E + LL+ ADV +
Sbjct: 52 AKDKNGSTPLHLAARNGHLEVVKLLLE-AGADVXAQDKFGK 91
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 82.8 bits (204), Expect = 7e-19
Identities = 38/195 (19%), Positives = 59/195 (30%), Gaps = 35/195 (17%)
Query: 25 HHGETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNAGYTPLHEAASHG----WLDIAR 78
HG TPLH + ++ V + + HG DN G + L +A
Sbjct: 129 EHGNTPLHWLTSIANLELVKHLV---KHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEA 185
Query: 79 LLLMYGADPSDSAIGGIRPLHDAAE----KGCVEMVRLL---PLHDAAEKGCVEMVRLLL 131
LL LH GC + + +K +
Sbjct: 186 LLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTN 245
Query: 132 SYGADPLLASYAVYFLSLPSR-------------------PLHDAAEKGCVEMVRLLLSY 172
+ P + L + L+ AA G + +V LL Y
Sbjct: 246 EKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY 305
Query: 173 GADPLLASYAGHTPL 187
GADP +A+ +G P+
Sbjct: 306 GADPFIANKSGLRPV 320
Score = 47.3 bits (112), Expect = 1e-06
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAA 69
+G+T L+ AARLG I V L +G P + +G P+ A
Sbjct: 282 NGDTCLNIAARLGNISIVDALL---DYGADPFIANKSGLRPVDFGA 324
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 78.8 bits (194), Expect = 3e-17
Identities = 31/235 (13%), Positives = 57/235 (24%), Gaps = 51/235 (21%)
Query: 26 HGETPLHRAARLGYIDAVAYCLEK-FSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG 84
AA G++ + E + A Y AA +G L + L
Sbjct: 127 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELA 186
Query: 85 ADPSDSAIG--GIRPLHDAA-EKGCVEMVRLL---------PLHDAAEKGCVEMVRLLLS 132
+ + I AA +G ++ L E G + +
Sbjct: 187 PTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIAR 246
Query: 133 YGADPLLASYAVYF------LSLPSR--------PLHDAAEKGC---VEMVRLLLS---- 171
+ A L ++ L + + ++ +R LLS
Sbjct: 247 HVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGI 306
Query: 172 -YGADPLLASYAGHTPLSITS----DETTRKLLQ------------YHLADVRGH 209
A + L + LL Y++ + G
Sbjct: 307 KALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYINETGGR 361
Score = 75.4 bits (185), Expect = 4e-16
Identities = 33/218 (15%), Positives = 53/218 (24%), Gaps = 44/218 (20%)
Query: 12 DVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNA-GYTPLHEAAS 70
++ +I AA G++ + E A Y AA
Sbjct: 149 ELAPTEIMAMIQAE-NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV 207
Query: 71 -HGWLDIARLLLMYGADPSDSAIGGIR----------------------PLHDAAEKGCV 107
G ++ LL + + I + G
Sbjct: 208 GRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVF 267
Query: 108 EMVR-------LLPLHDAAEKGC---VEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDA 157
++V L + + ++ +R LLS LA A + L A
Sbjct: 268 DLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATI-PGDANELLRLA 326
Query: 158 AEKGCVEMVRLLLSYGADPLL--------ASYAGHTPL 187
G LLLS + L G L
Sbjct: 327 LRLGNQGACALLLSIPSVLALTKANNYYINETGGRLDL 364
Score = 74.6 bits (183), Expect = 7e-16
Identities = 28/183 (15%), Positives = 45/183 (24%), Gaps = 34/183 (18%)
Query: 57 KDNAGYTPLHEAASHGW---LDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
K AA G LD LLL + AAE G + ++ L
Sbjct: 88 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRL 147
Query: 114 ------------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLH 155
AAE G + ++ L A
Sbjct: 148 CELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYY----AFR 203
Query: 156 DAA-EKGCVEMVRLLLSYGAD----PLLASYAGHTP----LSITSDETTRKLLQYHLADV 206
AA +G ++ LL + G ++ + + L++
Sbjct: 204 WAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNP 263
Query: 207 RGH 209
G
Sbjct: 264 DGV 266
Score = 51.1 bits (122), Expect = 7e-08
Identities = 15/94 (15%), Positives = 25/94 (26%), Gaps = 10/94 (10%)
Query: 27 GETPLHRAAR---LGYIDAVAYCLE----KFSHGPAPKDNAGYTPLHEAASHGWLDIARL 79
G L R +D + + L K A L A G L
Sbjct: 278 GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACAL 337
Query: 80 LLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
LL + A+ + G +++ +
Sbjct: 338 LLSIPS---VLALTKANNYYINETGGRLDLRAVA 368
Score = 48.8 bits (116), Expect = 4e-07
Identities = 15/115 (13%), Positives = 34/115 (29%), Gaps = 8/115 (6%)
Query: 75 DIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYG 134
++ ++ + + + DA +KG V ++ + LLL+
Sbjct: 59 NMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSD 118
Query: 135 ADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLA--SYAGHTPL 187
+ Y AAE G + ++ L ++A +
Sbjct: 119 EIVKVIQAENYQ------AFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAF 167
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 66.9 bits (163), Expect = 2e-13
Identities = 21/100 (21%), Positives = 28/100 (28%), Gaps = 2/100 (2%)
Query: 16 EVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNAGYTPLHEAASHGW 73
E ET LH A R ++ + + G T LH
Sbjct: 158 EKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDN 217
Query: 74 LDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
+ +LLL A + G PL A LL
Sbjct: 218 AECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELL 257
Score = 59.2 bits (143), Expect = 1e-10
Identities = 33/161 (20%), Positives = 53/161 (32%), Gaps = 23/161 (14%)
Query: 33 RAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAI 92
AR YI A Y +++ A L EA + G D ++
Sbjct: 103 MIARKDYITA-KYMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTE--- 158
Query: 93 GGIRPLHDAAEKGCVEMVRLLPLHDA---AEKGCVEMVRLLLSYGADPLLASYAVYFLSL 149
PL + E LH A ++ + +V L+ + + +
Sbjct: 159 --KIPLANGHEPDE------TALHLAVRSVDRTSLHIVDFLVQNSGN-------LDKQTG 203
Query: 150 PSR-PLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSI 189
LH E ++LLL A +A+ +G TPL I
Sbjct: 204 KGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 244
Score = 52.7 bits (126), Expect = 2e-08
Identities = 23/118 (19%), Positives = 29/118 (24%), Gaps = 26/118 (22%)
Query: 58 DNAGYTPLHEAASHG---WLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLP 114
T LH A L I L+ + L KG
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-----------LDKQTGKGST------A 208
Query: 115 LHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSY 172
LH E ++LLL A +A+ PL A LL
Sbjct: 209 LHYCCLTDNAECLKLLLRGKASIEIAN------ESGETPLDIAKRLKHEHCEELLTQA 260
Score = 40.4 bits (94), Expect = 2e-04
Identities = 12/61 (19%), Positives = 16/61 (26%), Gaps = 5/61 (8%)
Query: 25 HHGETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNAGYTPLHEAASHGWLDIARLLLM 82
G T LH + + L + +G TPL A LL
Sbjct: 203 GKGSTALHYCCLTDNAECLKLLL---RGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259
Query: 83 Y 83
Sbjct: 260 A 260
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 64.6 bits (157), Expect = 2e-12
Identities = 25/101 (24%), Positives = 34/101 (33%), Gaps = 2/101 (1%)
Query: 23 NKHHGETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNAGYTPLHEAASHGWLDIARLL 80
+ E LH A ++ ++ +G K G T LH AA + D +LL
Sbjct: 186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL 245
Query: 81 LMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEK 121
L A G L A +K E LL A
Sbjct: 246 LKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTF 286
Score = 59.6 bits (144), Expect = 9e-11
Identities = 34/160 (21%), Positives = 50/160 (31%), Gaps = 25/160 (15%)
Query: 33 RAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAI 92
R YI A Y +F+ P+ L A + L G D
Sbjct: 128 MGTRRDYIMAK-YVEHRFARRCTPEPQ----RLWTAICNRDLLSVLEAFANGQDFGQP-- 180
Query: 93 GGIRPLHDAAEKGCVEMVRLLPLHDAAEKG---CVEMVRLLLSYGADPLLASYAVYFLSL 149
P DA L LH A + + +V ++ G + +
Sbjct: 181 ---LPGPDAQAPEE------LVLHLAVKVANQASLPLVDFIIQNGGHLDAKA------AD 225
Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSI 189
+ LH AA + ++LLL A + AG T L I
Sbjct: 226 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI 265
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 57.5 bits (138), Expect = 6e-10
Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
Query: 14 GAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGW 73
GA+V +WV TPL +A + A + L + D+AG PLH A G
Sbjct: 223 GADV-NWVNGGQDNATPLIQATAANSLLACEF-LLQNGANVNQADSAGRGPLHHATILGH 280
Query: 74 LDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPL 115
+A L L GAD G PL A E ++V LL L
Sbjct: 281 TGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRL 322
Score = 53.2 bits (127), Expect = 2e-08
Identities = 32/172 (18%), Positives = 46/172 (26%), Gaps = 21/172 (12%)
Query: 18 RSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIA 77
R + G+ P+ + + + G + L
Sbjct: 157 RRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTM 216
Query: 78 RLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADP 137
L +GAD + + PL A + LL GA+
Sbjct: 217 ADALAHGADV---------NWVNGGQDNA------TPLIQATAANSLLACEFLLQNGANV 261
Query: 138 LLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSI 189
A S PLH A G + L L GAD G PL+I
Sbjct: 262 NQAD------SAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTI 307
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 54.9 bits (132), Expect = 5e-09
Identities = 25/106 (23%), Positives = 35/106 (33%), Gaps = 2/106 (1%)
Query: 24 KHHGETPLHRAARLGYIDAVAYC--LEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLL 81
+ E LH A ++ ++ + + K G T LH AA + D +LLL
Sbjct: 168 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL 227
Query: 82 MYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMV 127
A G L A +K E LL A V
Sbjct: 228 KGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHV 273
Score = 48.4 bits (115), Expect = 7e-07
Identities = 36/165 (21%), Positives = 55/165 (33%), Gaps = 29/165 (17%)
Query: 33 RAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY--GADPSDS 90
R YI A Y +F+ P+ L A + D+ +L + G D
Sbjct: 109 MGTRRDYIMA-KYVEHRFARRCTPEPQR----LWTAICNR--DLLSVLEAFANGQDFGQP 161
Query: 91 AIGGIRPLHDAAEKGCVEMVRLLPLHDA---AEKGCVEMVRLLLSYGADPLLASYAVYFL 147
P DA L LH A A + + +V ++ G +
Sbjct: 162 L-----PGPDAQAPEE------LVLHLAVKVANQASLPLVDFIIQNGGHLDAKA------ 204
Query: 148 SLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD 192
+ + LH AA + ++LLL A + AG T L I
Sbjct: 205 ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 249
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 5e-04
Identities = 37/198 (18%), Positives = 61/198 (30%), Gaps = 66/198 (33%)
Query: 66 HEAASHGW--LDIARLLLMYGADPSDSAI--GG-----IRPLHDA-----AEKGCVEMVR 111
H ++G+ LDI +P + I GG IR + A G ++ +
Sbjct: 1652 HFKDTYGFSILDIVI------NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEK 1705
Query: 112 LLPLHDAAEKGCV---EMVRLLLSYGADP--LLASYAVYFLSLPSRPLHDAAEKGCVEMV 166
+ + E L + P L A +
Sbjct: 1706 IFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAF--------------------- 1744
Query: 167 RLLLSYGADPLLASYAGH-----TPLSITSD----ETTRKLLQYHLADVRG---HEAPKW 214
L S G P A++AGH L+ +D E+ +++ Y RG A
Sbjct: 1745 EDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFY-----RGMTMQVAVPR 1799
Query: 215 DFAGPASCFDKQMVGYEP 232
D G + + M+ P
Sbjct: 1800 DELGRS---NYGMIAINP 1814
Score = 35.8 bits (82), Expect = 0.013
Identities = 38/218 (17%), Positives = 61/218 (27%), Gaps = 72/218 (33%)
Query: 28 ETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADP 87
+T L I A L + + + + G L+I L P
Sbjct: 178 QTYHVLVGDL--IKFSAETLSELIRTTLDAE-----KVF---TQG-LNILEWLENPSNTP 226
Query: 88 SD----SA------IG--------------GIRP--LHD--AAEKGCVEMV---RLLPLH 116
S IG G P L G + + +
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 117 DAAE---KGCVEMVRLLLSYGADPLLASYAVY-FLSLPSRPLHDAAEKGCVEMVRLLLSY 172
D+ E + + +L G + Y Y SLP L D+ E
Sbjct: 287 DSWESFFVSVRKAITVLFFIG----VRCYEAYPNTSLPPSILEDSLENNE---------- 332
Query: 173 GADPLLASYAGHTP-LSITSDETTRKLLQYHLADVRGH 209
G P +P LSI++ T++ +Q ++ H
Sbjct: 333 GV-P--------SPMLSISN--LTQEQVQDYVNKTNSH 359
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.16
Identities = 35/249 (14%), Positives = 70/249 (28%), Gaps = 51/249 (20%)
Query: 1 MTTQSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPA---PK 57
+TT+ T + + A + + HH L L K+ P+
Sbjct: 270 LTTRFKQVT-DFLSAATTTHISLDHH-SMTLTPDEVKSL-------LLKYLDCRPQDLPR 320
Query: 58 DNAGYTPLHE---AAS-HGWLDIARLLLMYGADPSDSAIG-GIRPLHDAAEKGCVEMVRL 112
+ P A S L D + I + L A + + + +
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 113 LP------------LHDAAEKGCVEMV-------RLLLSYGADPLLASYAVYFLSLPSRP 153
P + K V +V L+ + ++ ++Y
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 154 LHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEA-- 211
A + V+ + ++ +D L+ Y D+ + +HL ++ E
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYL---------DQYFYSHIGHHLKNIEHPERMT 491
Query: 212 --PKW--DF 216
DF
Sbjct: 492 LFRMVFLDF 500
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A
{Corynebacterium glutamicum}
Length = 361
Score = 27.0 bits (61), Expect = 5.2
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 10/61 (16%)
Query: 47 LEKFSHGPAPKDNAGYTP--LHEAASHG-------WLDIARL-LLMYGADPSDSAIGGIR 96
+ F A G H S +++ R L YG +P G++
Sbjct: 174 IIAFRRALALARKHGLECPVNHVCNSPAFLTRSDLHMEMVRPGLAFYGLEPVAGLEHGLK 233
Query: 97 P 97
P
Sbjct: 234 P 234
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 26.6 bits (58), Expect = 7.1
Identities = 8/31 (25%), Positives = 10/31 (32%)
Query: 36 RLGYIDAVAYCLEKFSHGPAPKDNAGYTPLH 66
+G V Y E + D A PL
Sbjct: 115 SVGMAIQVNYSSEVKENSVDSDDKAKVPPLI 145
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.421
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,718,290
Number of extensions: 225045
Number of successful extensions: 2076
Number of sequences better than 10.0: 1
Number of HSP's gapped: 849
Number of HSP's successfully gapped: 271
Length of query: 235
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 144
Effective length of database: 4,160,982
Effective search space: 599181408
Effective search space used: 599181408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)