Query psy571
Match_columns 162
No_of_seqs 147 out of 982
Neff 6.3
Searched_HMMs 46136
Date Sat Aug 17 00:39:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy571.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/571hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3946|consensus 100.0 5.9E-43 1.3E-47 291.0 8.8 156 2-162 133-290 (338)
2 PF04389 Peptidase_M28: Peptid 99.9 2E-23 4.4E-28 161.7 8.4 82 3-105 19-100 (179)
3 PRK10199 alkaline phosphatase 99.8 1.3E-19 2.9E-24 156.1 11.2 131 4-162 137-269 (346)
4 COG2234 Iap Predicted aminopep 99.8 1.9E-18 4.1E-23 150.7 8.0 73 5-99 223-295 (435)
5 KOG2195|consensus 99.3 2.5E-11 5.5E-16 112.9 10.2 81 5-103 365-446 (702)
6 KOG2194|consensus 99.1 1.4E-10 3E-15 108.9 6.2 85 4-113 157-244 (834)
7 PF05450 Nicastrin: Nicastrin; 98.9 1.4E-08 3.1E-13 83.6 10.8 89 4-100 18-109 (234)
8 KOG2526|consensus 98.0 1.6E-05 3.4E-10 70.8 7.5 78 5-100 232-311 (555)
9 COG4882 Predicted aminopeptida 97.8 2.9E-05 6.2E-10 68.0 4.8 76 5-101 202-281 (486)
10 PF09940 DUF2172: Domain of un 97.7 0.00013 2.8E-09 64.0 7.7 67 7-100 143-210 (386)
11 TIGR03176 AllC allantoate amid 97.5 0.00018 3.9E-09 63.1 5.4 54 6-66 84-139 (406)
12 PRK09961 exoaminopeptidase; Pr 97.2 0.0007 1.5E-08 58.6 5.7 65 7-99 163-227 (344)
13 TIGR01910 DapE-ArgE acetylorni 97.2 0.001 2.2E-08 57.0 6.6 52 6-67 101-152 (375)
14 TIGR01879 hydantase amidase, h 97.1 0.0008 1.7E-08 58.5 5.6 53 7-66 83-137 (401)
15 PRK13590 putative bifunctional 97.0 0.0012 2.7E-08 60.8 6.0 52 7-65 267-320 (591)
16 PF05343 Peptidase_M42: M42 gl 97.0 0.00092 2E-08 56.7 4.6 49 8-68 132-180 (292)
17 PF01546 Peptidase_M20: Peptid 97.0 0.0022 4.8E-08 48.9 6.3 52 6-67 32-84 (189)
18 PRK06133 glutamate carboxypept 97.0 0.0025 5.5E-08 55.6 7.3 53 6-68 132-184 (410)
19 PRK12890 allantoate amidohydro 96.9 0.0013 2.9E-08 57.2 5.0 57 7-68 90-146 (414)
20 TIGR03107 glu_aminopep glutamy 96.7 0.0033 7.1E-08 54.7 5.8 63 7-97 175-237 (350)
21 PRK08588 succinyl-diaminopimel 96.7 0.0049 1.1E-07 52.8 6.5 52 6-67 96-147 (377)
22 PRK13799 unknown domain/N-carb 96.6 0.0033 7.1E-08 58.0 5.6 52 7-65 267-320 (591)
23 PRK07906 hypothetical protein; 96.5 0.0057 1.2E-07 53.4 5.8 54 6-68 101-154 (426)
24 TIGR01883 PepT-like peptidase 96.3 0.007 1.5E-07 51.4 5.0 47 9-66 99-145 (361)
25 COG1363 FrvX Cellulase M and r 96.2 0.015 3.2E-07 51.0 6.7 65 8-100 178-242 (355)
26 PRK08262 hypothetical protein; 96.2 0.012 2.5E-07 52.6 6.1 54 7-70 151-204 (486)
27 TIGR01893 aa-his-dipept aminoa 96.2 0.0067 1.5E-07 54.1 4.5 45 10-68 109-153 (477)
28 PRK08652 acetylornithine deace 96.1 0.0096 2.1E-07 50.1 5.1 51 6-68 83-133 (347)
29 PRK13983 diaminopimelate amino 96.1 0.018 4E-07 49.3 6.7 52 6-67 113-165 (400)
30 PRK09133 hypothetical protein; 96.1 0.023 4.9E-07 50.5 7.5 55 6-69 137-191 (472)
31 TIGR01892 AcOrn-deacetyl acety 96.1 0.014 3.1E-07 49.3 5.9 51 6-68 94-144 (364)
32 PRK08651 succinyl-diaminopimel 96.1 0.013 2.8E-07 50.4 5.6 49 6-67 110-158 (394)
33 PRK08596 acetylornithine deace 96.1 0.013 2.8E-07 51.3 5.7 52 6-67 114-165 (421)
34 PRK08554 peptidase; Reviewed 95.9 0.033 7.1E-07 49.5 7.6 52 6-69 99-150 (438)
35 PRK12891 allantoate amidohydro 95.9 0.016 3.4E-07 50.7 5.3 52 7-65 92-145 (414)
36 TIGR01880 Ac-peptdase-euk N-ac 95.8 0.027 5.9E-07 48.7 6.7 52 6-67 108-160 (400)
37 PRK07522 acetylornithine deace 95.7 0.027 6E-07 48.1 6.2 53 6-70 100-152 (385)
38 PRK13009 succinyl-diaminopimel 95.6 0.037 8E-07 47.2 6.5 55 7-70 96-150 (375)
39 PRK07473 carboxypeptidase; Pro 95.5 0.046 1E-06 47.3 7.0 52 6-67 108-159 (376)
40 PRK09864 putative peptidase; P 95.4 0.029 6.4E-07 49.0 5.4 60 7-96 172-231 (356)
41 PRK06156 hypothetical protein; 95.3 0.043 9.4E-07 49.7 6.3 51 7-67 151-201 (520)
42 PRK07318 dipeptidase PepV; Rev 95.3 0.038 8.2E-07 49.1 5.8 52 6-67 114-165 (466)
43 PRK09104 hypothetical protein; 95.3 0.068 1.5E-06 47.4 7.3 52 6-67 124-175 (464)
44 PRK05111 acetylornithine deace 95.2 0.04 8.7E-07 47.1 5.6 50 6-67 107-156 (383)
45 PRK00466 acetyl-lysine deacety 95.2 0.046 9.9E-07 46.4 5.8 48 6-67 88-135 (346)
46 PRK12892 allantoate amidohydro 95.0 0.051 1.1E-06 47.1 5.7 53 7-66 90-144 (412)
47 PRK13007 succinyl-diaminopimel 95.0 0.067 1.5E-06 45.2 6.2 50 6-67 91-140 (352)
48 TIGR01902 dapE-lys-deAc N-acet 95.0 0.059 1.3E-06 45.5 5.7 49 6-68 78-126 (336)
49 PRK07907 hypothetical protein; 94.9 0.058 1.3E-06 47.6 5.7 48 7-67 121-168 (449)
50 PRK06446 hypothetical protein; 94.9 0.062 1.4E-06 47.3 5.9 51 6-67 99-149 (436)
51 PRK12893 allantoate amidohydro 94.9 0.054 1.2E-06 47.0 5.4 56 7-67 92-147 (412)
52 PRK07338 hypothetical protein; 94.8 0.078 1.7E-06 45.8 6.2 51 7-67 126-176 (402)
53 PRK09290 allantoate amidohydro 94.5 0.084 1.8E-06 46.0 5.7 56 7-67 89-144 (413)
54 PRK13381 peptidase T; Provisio 94.4 0.088 1.9E-06 45.7 5.7 47 9-66 137-183 (404)
55 TIGR01886 dipeptidase dipeptid 94.4 0.088 1.9E-06 47.0 5.8 52 6-67 113-164 (466)
56 TIGR01891 amidohydrolases amid 94.4 0.1 2.2E-06 44.6 6.0 43 13-66 93-135 (363)
57 PRK13013 succinyl-diaminopimel 94.2 0.14 3E-06 44.5 6.5 50 7-66 120-170 (427)
58 COG4310 Uncharacterized protei 94.1 0.081 1.8E-06 46.1 4.6 65 8-99 193-257 (435)
59 TIGR01887 dipeptidaselike dipe 94.0 0.12 2.6E-06 46.0 5.7 52 6-67 102-153 (447)
60 TIGR01882 peptidase-T peptidas 93.9 0.089 1.9E-06 46.0 4.7 51 3-65 136-186 (410)
61 TIGR01246 dapE_proteo succinyl 93.8 0.2 4.3E-06 42.8 6.5 54 7-69 93-146 (370)
62 PRK07079 hypothetical protein; 93.7 0.18 3.9E-06 44.8 6.2 53 7-68 124-176 (469)
63 PRK07205 hypothetical protein; 93.5 0.17 3.7E-06 44.6 5.8 51 6-66 112-162 (444)
64 PRK04443 acetyl-lysine deacety 93.4 0.15 3.3E-06 43.3 5.1 37 6-47 87-123 (348)
65 PRK08201 hypothetical protein; 93.3 0.21 4.6E-06 44.0 6.1 51 7-67 117-167 (456)
66 PRK13004 peptidase; Reviewed 93.3 0.2 4.2E-06 43.5 5.7 52 7-67 107-158 (399)
67 PRK15026 aminoacyl-histidine d 93.1 0.17 3.6E-06 45.8 5.2 47 6-66 108-157 (485)
68 TIGR01900 dapE-gram_pos succin 93.0 0.22 4.7E-06 43.0 5.5 55 7-67 100-154 (373)
69 PRK06915 acetylornithine deace 92.9 0.24 5.1E-06 43.2 5.6 50 6-65 130-179 (422)
70 PRK05469 peptidase T; Provisio 92.8 0.22 4.7E-06 43.3 5.2 46 9-65 139-184 (408)
71 PRK06837 acetylornithine deace 92.1 0.35 7.5E-06 42.4 5.6 39 7-47 135-173 (427)
72 KOG2657|consensus 92.0 0.46 1E-05 43.7 6.4 106 5-124 196-311 (596)
73 KOG2275|consensus 91.3 0.52 1.1E-05 42.1 5.9 52 7-67 126-177 (420)
74 PRK02256 putative aminopeptida 90.0 0.7 1.5E-05 41.8 5.7 35 7-47 257-291 (462)
75 PLN02280 IAA-amino acid hydrol 89.2 0.88 1.9E-05 41.1 5.7 43 14-67 190-232 (478)
76 TIGR03106 trio_M42_hydro hydro 88.2 0.78 1.7E-05 39.8 4.5 38 8-47 181-218 (343)
77 PF04114 Gaa1: Gaa1-like, GPI 86.6 2.6 5.6E-05 38.6 7.1 76 11-100 35-112 (504)
78 PRK08737 acetylornithine deace 82.9 2.4 5.2E-05 36.6 4.9 45 6-67 98-143 (364)
79 PLN02693 IAA-amino acid hydrol 82.0 3.5 7.5E-05 36.7 5.7 48 8-66 134-181 (437)
80 PRK02813 putative aminopeptida 79.0 5.2 0.00011 35.9 5.8 34 7-47 231-264 (428)
81 TIGR03320 ygeY M20/DapE family 78.1 3.2 7E-05 35.8 4.2 40 6-47 104-143 (395)
82 COG0624 ArgE Acetylornithine d 76.6 8.1 0.00017 33.4 6.2 53 6-68 112-164 (409)
83 PTZ00371 aspartyl aminopeptida 76.4 3.6 7.7E-05 37.3 4.1 39 7-47 248-287 (465)
84 COG1473 AbgB Metal-dependent a 75.4 7.4 0.00016 34.6 5.7 31 15-47 108-138 (392)
85 TIGR03526 selenium_YgeY putati 72.7 5.9 0.00013 34.2 4.4 40 6-47 104-143 (395)
86 KOG2276|consensus 63.5 16 0.00034 33.2 5.1 39 7-47 129-167 (473)
87 KOG1481|consensus 60.0 15 0.00033 31.9 4.3 46 4-71 325-370 (391)
88 COG2195 PepD Di- and tripeptid 54.7 14 0.0003 33.1 3.4 54 2-65 137-190 (414)
89 COG4187 RocB Arginine degradat 37.5 1E+02 0.0023 28.4 6.1 74 7-98 137-210 (553)
90 PF14330 DUF4387: Domain of un 36.8 38 0.00083 24.5 2.7 64 18-97 1-66 (99)
91 PF13809 Tubulin_2: Tubulin li 32.0 86 0.0019 26.9 4.7 38 11-48 6-43 (345)
92 PF15560 Imm8: Immunity protei 28.5 1.4E+02 0.003 22.7 4.6 59 5-67 8-73 (133)
93 cd03527 RuBisCO_small Ribulose 28.2 1.1E+02 0.0025 22.0 4.0 36 3-46 51-86 (99)
94 CHL00130 rbcS ribulose-1,5-bis 25.8 1.2E+02 0.0025 23.3 3.8 36 4-47 54-89 (138)
95 COG0757 AroQ 3-dehydroquinate 25.2 74 0.0016 24.6 2.7 35 91-133 10-44 (146)
96 PRK05395 3-dehydroquinate dehy 24.3 67 0.0014 24.9 2.3 42 91-146 11-52 (146)
97 TIGR01088 aroQ 3-dehydroquinat 24.2 84 0.0018 24.2 2.8 42 91-146 9-50 (141)
98 PF07131 DUF1382: Protein of u 21.4 88 0.0019 20.7 2.1 21 18-46 12-32 (61)
No 1
>KOG3946|consensus
Probab=100.00 E-value=5.9e-43 Score=291.00 Aligned_cols=156 Identities=49% Similarity=0.848 Sum_probs=139.6
Q ss_pred CCCccCCCCCchHHHHHHHHHHHHHHHhhc--cCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcc
Q psy571 2 ASPFIGATDSAVPCAMLLYIARLMRQELSQ--LNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKT 79 (162)
Q Consensus 2 ~~~f~GA~DnAsg~A~lLeiAr~l~~~~~~--~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~ 79 (162)
+..|+||+|+|++||+||++|++|.+.+.. ..++.++++|||||||||.+|+++|++|||||+|++|.+- ++...+.
T Consensus 133 ~~~~vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFFDGEEAf~eW~p~DSlYGsRhLA~~~~sw-~~~~~r~ 211 (338)
T KOG3946|consen 133 GGMFVGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFFDGEEAFEEWGPEDSLYGSRHLAAKWESW-PHSGIRG 211 (338)
T ss_pred CcceEeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEeccHHHHhhcCCccccchHHHHHHHHhcc-CCCCCcc
Confidence 345899999999999999999999997763 4678999999999999999999999999999999999884 3333344
Q ss_pred cccccceeeEEEeccCCCCCCcccccCCCchHHHHHHHHHHHHHHHhhhhccccCCCccccccccccCCCCCCccCcccc
Q psy571 80 LTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPF 159 (162)
Q Consensus 80 ~~~l~~i~~~i~lDmvG~~~~~~~~~~~~t~~~~~~l~~ie~~l~~~~~l~~~~~~~~~~~~~F~~~~~~~~i~DDH~PF 159 (162)
...+++|+.+|++|++|++||.|++.++.|..||.++.+||.+|+.+|+++++.. +..||+++..++.|+|||+||
T Consensus 212 ~~~ld~idl~vLldllga~~p~f~~~~~~t~~wF~Rl~~iE~~l~~~g~l~s~r~----~~~~Fq~~~~~~~veDDHiPF 287 (338)
T KOG3946|consen 212 DLLLDGIDLLVLLDLLGAPNPTFYNFFPNTDRWFHRLQSIEGELALLGLLASHRL----PPRYFQPGGLSSVVEDDHIPF 287 (338)
T ss_pred ccccccchHhhhHHHhcCCChhHhhcCcchHHHHHHHHHHHHHHHHHHHHHhccC----CchhccccCccccccCCcchh
Confidence 5789999999999999999999999999999999999999999999999988752 458999987788999999999
Q ss_pred cCC
Q psy571 160 YYR 162 (162)
Q Consensus 160 ~~r 162 (162)
++|
T Consensus 288 lrr 290 (338)
T KOG3946|consen 288 LRR 290 (338)
T ss_pred hhc
Confidence 987
No 2
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=99.89 E-value=2e-23 Score=161.73 Aligned_cols=82 Identities=32% Similarity=0.528 Sum_probs=70.1
Q ss_pred CCccCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCccccc
Q psy571 3 SPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTK 82 (162)
Q Consensus 3 ~~f~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~ 82 (162)
..++||+|||||||+|||+||.|+... .+++++|+||||+||| .|++||++|+++.. ..
T Consensus 19 ~~~~GA~DnasGva~lLelAr~l~~~~--~~~~~~i~fv~~~~EE--------~gl~GS~~~~~~~~-----------~~ 77 (179)
T PF04389_consen 19 SWSPGANDNASGVAALLELARVLKELK--PQPKRTIRFVFFDGEE--------QGLLGSRAFVEHDH-----------EE 77 (179)
T ss_dssp CSSS-TTTTHHHHHHHHHHHHHHHHST--HSSSEEEEEEEESSGG--------GTSHHHHHHHHHHH-----------CH
T ss_pred cccCCcccchHHHHHHHHHHHHHHHhh--cccCccEEEEEecccc--------cCccchHHHHHhhh-----------cc
Confidence 478999999999999999999999831 4668999999999999 89999999998421 36
Q ss_pred ccceeeEEEeccCCCCCCccccc
Q psy571 83 LDRMDMLVLLDLLGTSNPRFYSY 105 (162)
Q Consensus 83 l~~i~~~i~lDmvG~~~~~~~~~ 105 (162)
+++|.++|||||+|..++.+...
T Consensus 78 ~~~~~~~inlD~~g~~~~~~~~~ 100 (179)
T PF04389_consen 78 LDNIAAVINLDMIGSGDPTVYSE 100 (179)
T ss_dssp HHHEEEEEEECSSBSSSSEEEEE
T ss_pred cccceeEEeccccccCcccceee
Confidence 78999999999999998866654
No 3
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.81 E-value=1.3e-19 Score=156.08 Aligned_cols=131 Identities=17% Similarity=0.204 Sum_probs=89.7
Q ss_pred CccCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcccccc
Q psy571 4 PFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKL 83 (162)
Q Consensus 4 ~f~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l 83 (162)
..+||+|||||||+|||+||.|.. .+++++|.|++|++|| .|++||++|++.+.. .++
T Consensus 137 ~~~GA~DnasGvA~lLe~ar~l~~----~~~~~~I~fv~~~~EE--------~Gl~GS~~~~~~~~~----------~~~ 194 (346)
T PRK10199 137 TLQGMDDNAAGLGVMLELAERLKN----VPTEYGIRFVATSGEE--------EGKLGAENLLKRMSD----------TEK 194 (346)
T ss_pred ccCCccccHHHHHHHHHHHHHHhh----CCCCCcEEEEEECCcc--------cCcHHHHHHHHhcCc----------cch
Confidence 467999999999999999999986 4577899999999999 899999999976422 367
Q ss_pred cceeeEEEeccCCCCCCcccccCCCchHHHHHHHHHHHHHHHhhhhccccCC-Cc-cccccccccCCCCCCccCcccccC
Q psy571 84 DRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESRLTAQGLLNMVNSN-RS-KKLTYFREMSTFPVAEDDHLPFYY 161 (162)
Q Consensus 84 ~~i~~~i~lDmvG~~~~~~~~~~~~t~~~~~~l~~ie~~l~~~~~l~~~~~~-~~-~~~~~F~~~~~~~~i~DDH~PF~~ 161 (162)
++|.++|||||++..+..+.....++......+ +..++.+++...+..-. .+ ++ ..|+ .+.+.++||.||.+
T Consensus 195 ~~~~~~iNlD~~~~~d~~~~~~g~~~~~~~~~~--~~d~~~~~a~~~g~~~~~~~~~~-~~~p---~g~~~rSDH~~F~~ 268 (346)
T PRK10199 195 KNTLLVINLDNLIVGDKLYFNSGVNTPEAVRKL--TRDRALAIARRHGIAATTNPGLN-KNYP---KGTGCCNDAEVFDK 268 (346)
T ss_pred hcEEEEEEeccCCCCCceEEecCCCcHHHHhHH--HHHHHHHHHHHcCCccccCCCcc-cccc---CCCcCCcccHHHHh
Confidence 899999999999987765555555544322111 11223333333343210 00 11 1122 24578999999987
Q ss_pred C
Q psy571 162 R 162 (162)
Q Consensus 162 r 162 (162)
+
T Consensus 269 ~ 269 (346)
T PRK10199 269 A 269 (346)
T ss_pred c
Confidence 4
No 4
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=99.75 E-value=1.9e-18 Score=150.65 Aligned_cols=73 Identities=25% Similarity=0.408 Sum_probs=64.8
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCccccccc
Q psy571 5 FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLD 84 (162)
Q Consensus 5 f~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~ 84 (162)
.+||+|||||+|+|||+||.|+. .+++++|+|++|++|| .||.||++|+.+... ...+
T Consensus 223 ~~GA~DNasGva~llEiAr~l~~----~~p~~~v~f~~~~aEE--------~Gl~GS~~~~~~~~~----------~~~~ 280 (435)
T COG2234 223 GPGADDNASGVAALLELARVLKG----NPPKRTVRFVAFGAEE--------SGLLGSEAYVKRLSK----------DLDK 280 (435)
T ss_pred CCCcccccHHHHHHHHHHHHHhc----CCCCceEEEEEecchh--------hcccccHHHHhcCCc----------chhh
Confidence 48999999999999999999998 5699999999999999 899999999976432 2356
Q ss_pred ceeeEEEeccCCCCC
Q psy571 85 RMDMLVLLDLLGTSN 99 (162)
Q Consensus 85 ~i~~~i~lDmvG~~~ 99 (162)
.+.++||+||+|.++
T Consensus 281 ~~~~viN~Dm~g~~~ 295 (435)
T COG2234 281 KIALVINLDMLGSPN 295 (435)
T ss_pred hhheEEecccccCCC
Confidence 788899999999986
No 5
>KOG2195|consensus
Probab=99.26 E-value=2.5e-11 Score=112.89 Aligned_cols=81 Identities=20% Similarity=0.205 Sum_probs=71.0
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHhhc-cCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcccccc
Q psy571 5 FIGATDSAVPCAMLLYIARLMRQELSQ-LNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKL 83 (162)
Q Consensus 5 f~GA~DnAsg~A~lLeiAr~l~~~~~~-~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l 83 (162)
-.||.|.+||+|+|+||||.+...+++ .+|.|+|.|++||||| -|+.||..+++.+.+. --
T Consensus 365 ~~Ga~dp~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~sWdAeE--------fGliGStE~~E~~~~~----------L~ 426 (702)
T KOG2195|consen 365 TFGAIDPNSGTALLLEIARALSKLKKRGWRPRRTILFASWDAEE--------FGLLGSTEWAEEYLKN----------LK 426 (702)
T ss_pred ccCCcCCCccHHHHHHHHHHHHHHHHcCCCccceEEEEEccchh--------ccccccHHHHHHHHHH----------hh
Confidence 368999999999999999999997665 6899999999999999 8999999999987664 23
Q ss_pred cceeeEEEeccCCCCCCccc
Q psy571 84 DRMDMLVLLDLLGTSNPRFY 103 (162)
Q Consensus 84 ~~i~~~i~lDmvG~~~~~~~ 103 (162)
.++.++||+|+++.+|..+.
T Consensus 427 ~~av~yin~d~~~~~~~~l~ 446 (702)
T KOG2195|consen 427 SRAVVYINVDNAVLGDYTLH 446 (702)
T ss_pred heeEEEEeccccccCCceeE
Confidence 57999999999999985444
No 6
>KOG2194|consensus
Probab=99.09 E-value=1.4e-10 Score=108.89 Aligned_cols=85 Identities=18% Similarity=0.282 Sum_probs=68.5
Q ss_pred CccCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHH--HHHhcccccCCcccc
Q psy571 4 PFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAA--KWERSHLQHRGKTLT 81 (162)
Q Consensus 4 ~f~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~--~~~~~~~~~~~~~~~ 81 (162)
+-+||+|++++||+|||++|.+.+.- +...++|.|.|+++|| ++|.||..|+. .|+
T Consensus 157 t~~gAtDDg~~va~mLe~lRv~s~~~--~~l~~~vVFLfNgaEE--------~~L~gsH~FItQH~w~------------ 214 (834)
T KOG2194|consen 157 TGPGATDDGSGVASMLEALRVLSKSD--KLLTHSVVFLFNGAEE--------SGLLGSHAFITQHPWS------------ 214 (834)
T ss_pred CCCCCCcchhHHHHHHHHHHHhhcCC--CcccccEEEEecCccc--------chhhhcccceecChhh------------
Confidence 45899999999999999999999841 3348999999999999 89999999996 444
Q ss_pred cccceeeEEEeccCCCCCCc-ccccCCCchHHH
Q psy571 82 KLDRMDMLVLLDLLGTSNPR-FYSYYPPTHKWY 113 (162)
Q Consensus 82 ~l~~i~~~i~lDmvG~~~~~-~~~~~~~t~~~~ 113 (162)
++|+++||||..|+.... +....++. |+.
T Consensus 215 --~~~ka~INLea~GsGGreiLFQagp~~-wl~ 244 (834)
T KOG2194|consen 215 --KNIKAVINLEAAGSGGREILFQAGPNH-WLL 244 (834)
T ss_pred --hhhheEEeccccCcccceeEEecCCch-HHH
Confidence 459999999999997653 33355553 543
No 7
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=98.91 E-value=1.4e-08 Score=83.59 Aligned_cols=89 Identities=24% Similarity=0.281 Sum_probs=72.1
Q ss_pred CccCCCCCchHHHHHHHHHHHHHHHhhc-cCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCc--cc
Q psy571 4 PFIGATDSAVPCAMLLYIARLMRQELSQ-LNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGK--TL 80 (162)
Q Consensus 4 ~f~GA~DnAsg~A~lLeiAr~l~~~~~~-~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~--~~ 80 (162)
.-+||+.++||..+||.+|++|.+.... ...++.|.|+||.||- -+-.||+.|+.-+.+..-|.... ..
T Consensus 18 ~s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs--------~dYiGS~R~vyDm~~~~f~~~~~~~~~ 89 (234)
T PF05450_consen 18 LSPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGES--------FDYIGSSRFVYDMQNGNFPSDSLQFQP 89 (234)
T ss_pred CCCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCcc--------ccccchHHHHHHHHcCcCccccccccc
Confidence 3589999999999999999999876332 4568999999999999 56789999999888765441111 23
Q ss_pred ccccceeeEEEeccCCCCCC
Q psy571 81 TKLDRMDMLVLLDLLGTSNP 100 (162)
Q Consensus 81 ~~l~~i~~~i~lDmvG~~~~ 100 (162)
..+++|+.+|-|+.||....
T Consensus 90 i~~~~I~~~IElgqvg~~~~ 109 (234)
T PF05450_consen 90 ISLDNIDSVIELGQVGLSNS 109 (234)
T ss_pred ccHHHCCEEEEeeccCCCCC
Confidence 67889999999999998764
No 8
>KOG2526|consensus
Probab=98.03 E-value=1.6e-05 Score=70.83 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=59.3
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHhhc--cCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCccccc
Q psy571 5 FIGATDSAVPCAMLLYIARLMRQELSQ--LNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTK 82 (162)
Q Consensus 5 f~GA~DnAsg~A~lLeiAr~l~~~~~~--~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~ 82 (162)
-+||+-|+||+.+|||+||.+...-.. ..+++++.|+.-+|-- -...|++++-+--.+ .-
T Consensus 232 svgADSNGSGvvaLLelarlfSkly~ypsTrakYnLlF~lt~aG~--------lNyqGTkkWLe~dd~----------~l 293 (555)
T KOG2526|consen 232 SVGADSNGSGVVALLELARLFSKLYDYPSTRAKYNLLFILTAAGK--------LNYQGTKKWLEFDDA----------DL 293 (555)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHhcCcccccceeEEEEEccCcc--------ccccchhhhhhcchH----------HH
Confidence 579999999999999999999985321 3568999999998877 345688765542211 11
Q ss_pred ccceeeEEEeccCCCCCC
Q psy571 83 LDRMDMLVLLDLLGTSNP 100 (162)
Q Consensus 83 l~~i~~~i~lDmvG~~~~ 100 (162)
-++|+..|+||.||...-
T Consensus 294 q~nVdfaiCLdtig~~~s 311 (555)
T KOG2526|consen 294 QKNVDFAICLDTIGRKTS 311 (555)
T ss_pred HhcccEEEEhhhhccccC
Confidence 248999999999999854
No 9
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=97.79 E-value=2.9e-05 Score=68.03 Aligned_cols=76 Identities=22% Similarity=0.293 Sum_probs=61.2
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCc-c---ccccCCCCCccchHHHHHHHHhcccccCCccc
Q psy571 5 FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEE-A---FNEWSAEDSIWGARHLAAKWERSHLQHRGKTL 80 (162)
Q Consensus 5 f~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE-~---~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~ 80 (162)
|.|++||-.|+|.-.++++.|.. ....+-++.|++|| . +..| .+-.||+.|-+.|+.
T Consensus 202 ~~G~tDN~lg~~~AV~~~~~lr~------~~~~~~lv~FtAEE~g~p~~~sf---yWa~GSr~~lk~~k~---------- 262 (486)
T COG4882 202 YTGFTDNILGVAQAVETAGRLRG------RGLAAGLVVFTAEEHGMPGMASF---YWAAGSRGLLKESKA---------- 262 (486)
T ss_pred hhcccchhhhHHHHHHHHHHHhh------cCcceeEEEEeccccCCCCCcce---eecccchHHHhhcCC----------
Confidence 78999999999999999999976 34567899999999 2 2233 345799988877654
Q ss_pred ccccceeeEEEeccCCCCCCc
Q psy571 81 TKLDRMDMLVLLDLLGTSNPR 101 (162)
Q Consensus 81 ~~l~~i~~~i~lDmvG~~~~~ 101 (162)
.++|.+.||+|.+|...+.
T Consensus 263 --~~~v~~~VN~Dv~g~~~lv 281 (486)
T COG4882 263 --AEEVEAYVNFDVAGYRCLV 281 (486)
T ss_pred --chhhhheeccccccccchh
Confidence 4679999999999998774
No 10
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=97.72 E-value=0.00013 Score=63.98 Aligned_cols=67 Identities=19% Similarity=0.299 Sum_probs=48.0
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcccccccc-
Q psy571 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDR- 85 (162)
Q Consensus 7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~- 85 (162)
-||||.||+|++.++|+.|.. .+...+.+|+|. ....||-.+-++-. ..+++
T Consensus 143 mANdnLSG~~v~~~La~~L~~----~~~rytYRflf~------------PeTIGsI~yLskn~-----------~~l~~~ 195 (386)
T PF09940_consen 143 MANDNLSGPAVLTFLAKWLKQ----LPNRYTYRFLFV------------PETIGSITYLSKNL-----------DELKKN 195 (386)
T ss_dssp -TTTTHHHHHHHHHHHHHHTT----S--SSEEEEEEE-------------TTHHHHHHHHH-G-----------GGGGG-
T ss_pred cccccccHHHHHHHHHHHHhc----CCcCceEEEEEc------------cccHHHHHHHHHCH-----------HHHhhh
Confidence 399999999999999999998 455699999999 55679976654411 34566
Q ss_pred eeeEEEeccCCCCCC
Q psy571 86 MDMLVLLDLLGTSNP 100 (162)
Q Consensus 86 i~~~i~lDmvG~~~~ 100 (162)
|++.++|.|||....
T Consensus 196 v~~G~vLtcvGD~~~ 210 (386)
T PF09940_consen 196 VKAGLVLTCVGDDGA 210 (386)
T ss_dssp EEEEEE--S--SSS-
T ss_pred eeeeEEEEEecCCCC
Confidence 999999999999875
No 11
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=97.48 E-value=0.00018 Score=63.11 Aligned_cols=54 Identities=13% Similarity=0.257 Sum_probs=45.2
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCcc--ccccCCCCCccchHHHHH
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEA--FNEWSAEDSIWGARHLAA 66 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~--~~~w~~~~~l~GS~~~a~ 66 (162)
=|.-|++.||++.||++|.|...- .+++++|.+|+|..||+ |. .+++||+.++-
T Consensus 84 gG~~dg~~Gv~~~le~~~~l~~~~--~~~~~~i~vi~~~~EEg~rf~-----~~~~Gs~~~~g 139 (406)
T TIGR03176 84 GGNLDGQFGALAAWLAVDYLKEKY--GAPLRTVEVLSMAEEEGSRFP-----YVFWGSKNIFG 139 (406)
T ss_pred CCccCchhhHHHHHHHHHHHHHcC--CCCCCCeEEEEeccccCccCC-----cccccHHHHhC
Confidence 377899999999999999999742 36889999999999993 21 35999999983
No 12
>PRK09961 exoaminopeptidase; Provisional
Probab=97.20 E-value=0.0007 Score=58.56 Aligned_cols=65 Identities=18% Similarity=0.219 Sum_probs=52.7
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcccccccce
Q psy571 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRM 86 (162)
Q Consensus 7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~i 86 (162)
.|-||=+||++|||++|.++. ++++..|.|+|++-|| -|+.|++..+..+ +.
T Consensus 163 kalDnR~g~~~lle~l~~l~~----~~~~~~v~~~~tvqEE--------vG~rGa~~aa~~i----------------~p 214 (344)
T PRK09961 163 KAFDDRLGCYLLVTLLRELHD----AELPAEVWLVASSSEE--------VGLRGGQTATRAV----------------SP 214 (344)
T ss_pred eechhhHhHHHHHHHHHHhhh----cCCCceEEEEEEcccc--------cchHHHHHHHhcc----------------CC
Confidence 578999999999999999976 4567899999999999 8999998777442 23
Q ss_pred eeEEEeccCCCCC
Q psy571 87 DMLVLLDLLGTSN 99 (162)
Q Consensus 87 ~~~i~lDmvG~~~ 99 (162)
+..|.+|..-.++
T Consensus 215 d~~I~vDv~~~~d 227 (344)
T PRK09961 215 DVAIVLDTACWAK 227 (344)
T ss_pred CEEEEEeccCCCC
Confidence 5678888775543
No 13
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=97.19 E-value=0.001 Score=57.01 Aligned_cols=52 Identities=27% Similarity=0.217 Sum_probs=43.2
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 67 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~ 67 (162)
.|+.|+-+|+|++|+.++.|...- ..++..|.|+|..+|| .+..|++++++.
T Consensus 101 rG~~D~k~~~a~~l~a~~~l~~~~--~~~~~~i~~~~~~~EE--------~g~~G~~~~~~~ 152 (375)
T TIGR01910 101 RGATDMKGGLVALLYALKAIREAG--IKPNGNIILQSVVDEE--------SGEAGTLYLLQR 152 (375)
T ss_pred cCccccchHHHHHHHHHHHHHHcC--CCCCccEEEEEEcCcc--------cCchhHHHHHHc
Confidence 489999999999999999997631 2457789999999999 566799988853
No 14
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=97.15 E-value=0.0008 Score=58.53 Aligned_cols=53 Identities=17% Similarity=0.405 Sum_probs=43.4
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCcc--ccccCCCCCccchHHHHH
Q psy571 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEA--FNEWSAEDSIWGARHLAA 66 (162)
Q Consensus 7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~--~~~w~~~~~l~GS~~~a~ 66 (162)
|.-|+..|+|++|++++.|+..- .+++..|.|++|..||. |. .+++||++++.
T Consensus 83 g~~dg~~gvaa~l~a~~~l~~~g--~~~~~~i~~~~~~dEE~~~f~-----~~~~Gs~~~~~ 137 (401)
T TIGR01879 83 GNFDGQLGVLAGIEVVDALKEAY--VVPLHPIEVVAFTEEEGSRFP-----YGMWGSRNMVG 137 (401)
T ss_pred CccCCHHHHHHHHHHHHHHHHcC--CCCCCCeEEEEEeCCcCcCcc-----cccccHHHHhc
Confidence 67799999999999999998742 35788999999999992 11 37899999974
No 15
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=97.04 E-value=0.0012 Score=60.78 Aligned_cols=52 Identities=19% Similarity=0.318 Sum_probs=41.9
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCcc--ccccCCCCCccchHHHH
Q psy571 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEA--FNEWSAEDSIWGARHLA 65 (162)
Q Consensus 7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~--~~~w~~~~~l~GS~~~a 65 (162)
|.-|+..||+++||++|.|...- .++++.|.||+|..||+ |. .+++||+.++
T Consensus 267 G~~DG~~Gv~a~lea~~~l~~~~--~~~~~~i~vv~~~~EEg~rF~-----~~~~GS~~~~ 320 (591)
T PRK13590 267 GKYDGRLGIFVPMACVRELHRQG--RRLPFGLEVVGFAEEEGQRYK-----ATFLGSGALI 320 (591)
T ss_pred CCcccHHHHHHHHHHHHHHHHcC--CCCCCCeEEEEecCCccccCC-----ccccchHHHh
Confidence 44799999999999999998741 25568999999999993 32 3689999865
No 16
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=97.02 E-value=0.00092 Score=56.73 Aligned_cols=49 Identities=27% Similarity=0.403 Sum_probs=42.5
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHH
Q psy571 8 ATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW 68 (162)
Q Consensus 8 A~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~ 68 (162)
|-||=+||++|||++|.|+. .+.+..|.|+|-.-|| -|+.|++..|...
T Consensus 132 alDdR~g~~~lle~l~~l~~----~~~~~~v~~v~tvqEE--------vG~rGA~~aa~~i 180 (292)
T PF05343_consen 132 ALDDRAGCAVLLELLRELKE----KELDVDVYFVFTVQEE--------VGLRGAKTAAFRI 180 (292)
T ss_dssp THHHHHHHHHHHHHHHHHTT----SS-SSEEEEEEESSCT--------TTSHHHHHHHHHH
T ss_pred eCCchhHHHHHHHHHHHHhh----cCCCceEEEEEEeeee--------ecCcceeeccccc
Confidence 56899999999999999987 4556999999999999 8999999888664
No 17
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=97.00 E-value=0.0022 Score=48.94 Aligned_cols=52 Identities=23% Similarity=0.219 Sum_probs=44.1
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCcc-chHHHHHH
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIW-GARHLAAK 67 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~-GS~~~a~~ 67 (162)
.|++|+-.|++++|.+++.|.+.. .+++.+|.|+|...|| .+.. |++++++.
T Consensus 32 rG~~D~k~~~~~~l~a~~~l~~~~--~~~~~~i~~~~~~~EE--------~g~~~g~~~l~~~ 84 (189)
T PF01546_consen 32 RGADDMKGGIAAMLAALKALKESG--DDLPGNIIFLFTPDEE--------IGSIGGAKHLLEE 84 (189)
T ss_dssp TTTTTTHHHHHHHHHHHHHHHHTT--TTCSSEEEEEEESTCC--------GTSTTHHHHHHHH
T ss_pred CCcCCCcccHHHHHHHHHHHHhcc--cccccccccccccccc--------CCCcchhhhhhhh
Confidence 599999999999999999997532 5788999999999999 4444 99988865
No 18
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=96.99 E-value=0.0025 Score=55.65 Aligned_cols=53 Identities=25% Similarity=0.278 Sum_probs=43.8
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHH
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW 68 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~ 68 (162)
.|+.|+-+|+|++|.+++.|.... .++..+|.|+|..+|| .+..|++++.+..
T Consensus 132 rG~~D~kgg~a~~l~a~~~l~~~~--~~~~~~i~~~~~~dEE--------~g~~G~~~~~~~~ 184 (410)
T PRK06133 132 PGIADDKGGVAVILHALKILQQLG--FKDYGTLTVLFNPDEE--------TGSPGSRELIAEL 184 (410)
T ss_pred CccccchHHHHHHHHHHHHHHHcC--CCCCCCEEEEEECCcc--------cCCccHHHHHHHH
Confidence 588999999999999999997631 2355789999999999 5667999998664
No 19
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=96.92 E-value=0.0013 Score=57.23 Aligned_cols=57 Identities=25% Similarity=0.335 Sum_probs=43.3
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHH
Q psy571 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW 68 (162)
Q Consensus 7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~ 68 (162)
|+.|+.+|+|++|++++.|.... ..++.+|.|+++..||.- .+ .-+++||++++..+
T Consensus 90 g~~D~~~g~aa~l~a~~~l~~~~--~~~~~~i~~~~~~dEE~~-~~--~~~~~G~~~~~~~~ 146 (414)
T PRK12890 90 GRYDGILGVLAGLEVVAALREAG--IRPPHPLEVIAFTNEEGV-RF--GPSMIGSRALAGTL 146 (414)
T ss_pred CCcCCHHHHHHHHHHHHHHHHcC--CCCCCCeEEEEEeccccc-cc--CCccccHHHHHccc
Confidence 67899999999999999998631 245789999999999920 00 01578999887643
No 20
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=96.73 E-value=0.0033 Score=54.73 Aligned_cols=63 Identities=19% Similarity=0.102 Sum_probs=50.8
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcccccccce
Q psy571 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRM 86 (162)
Q Consensus 7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~i 86 (162)
-|-||=+|||+|+|++|.|+. ++++..|.++|-.-|| -|+-||+.-|... +.
T Consensus 175 kalDdR~g~a~l~e~l~~l~~----~~~~~~l~~~~tvqEE--------vG~rGA~~aa~~i----------------~p 226 (350)
T TIGR03107 175 KAWDNRYGVLMILELLESLKD----QELPNTLIAGANVQEE--------VGLRGAHVSTTKF----------------NP 226 (350)
T ss_pred eccccHHHHHHHHHHHHHhhh----cCCCceEEEEEEChhh--------cCchhhhhHHhhC----------------CC
Confidence 378999999999999999986 5677899999999999 8999999665442 23
Q ss_pred eeEEEeccCCC
Q psy571 87 DMLVLLDLLGT 97 (162)
Q Consensus 87 ~~~i~lDmvG~ 97 (162)
+..|.+|..-.
T Consensus 227 D~aI~vDv~~~ 237 (350)
T TIGR03107 227 DIFFAVDCSPA 237 (350)
T ss_pred CEEEEEecCCc
Confidence 57788886644
No 21
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=96.68 E-value=0.0049 Score=52.77 Aligned_cols=52 Identities=29% Similarity=0.243 Sum_probs=42.6
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 67 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~ 67 (162)
.|+.|+-.|+|++|..++.|...- ..++.+|.|+|..+|| .+..|++++.+.
T Consensus 96 rG~~D~Kgg~aa~l~a~~~l~~~~--~~~~~~i~l~~~~dEE--------~g~~G~~~~~~~ 147 (377)
T PRK08588 96 RGATDMKSGLAALVIAMIELKEQG--QLLNGTIRLLATAGEE--------VGELGAKQLTEK 147 (377)
T ss_pred cCcccccchHHHHHHHHHHHHHcC--CCCCCcEEEEEEcccc--------cCchhHHHHHhc
Confidence 378899999999999999997631 2456799999999999 556799988854
No 22
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=96.65 E-value=0.0033 Score=58.02 Aligned_cols=52 Identities=17% Similarity=0.266 Sum_probs=43.5
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCcc--ccccCCCCCccchHHHH
Q psy571 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEA--FNEWSAEDSIWGARHLA 65 (162)
Q Consensus 7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~--~~~w~~~~~l~GS~~~a 65 (162)
|-=|+..||++.|+++|.|...- .++++.|.+|+|..||+ |. .++.||+.++
T Consensus 267 G~~DG~~Gv~a~l~~~~~l~~~~--~~~~~~i~vi~~~~EEg~rF~-----~~~~GS~~~~ 320 (591)
T PRK13799 267 GKYDGREGIFLAIACVKELHEQG--ERLPFHFEVIAFAEEEGQRFK-----ATFLGSGALI 320 (591)
T ss_pred CccccHHHHHHHHHHHHHHHHcC--CCCCCCeEEEEecCCCccCCC-----ccccchHHHh
Confidence 55699999999999999999742 36788999999999994 32 3789999998
No 23
>PRK07906 hypothetical protein; Provisional
Probab=96.48 E-value=0.0057 Score=53.40 Aligned_cols=54 Identities=28% Similarity=0.297 Sum_probs=44.1
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHH
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW 68 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~ 68 (162)
.|+.|+-.|+|++|++++.|.... ..++.+|.|+|+..||. .+..|++++++..
T Consensus 101 rG~~D~Kg~~a~~l~a~~~l~~~~--~~~~~~i~~~~~~dEE~-------g~~~g~~~l~~~~ 154 (426)
T PRK07906 101 RGAVDMKDMDAMMLAVVRHLARTG--RRPPRDLVFAFVADEEA-------GGTYGAHWLVDNH 154 (426)
T ss_pred cCccccchHHHHHHHHHHHHHHcC--CCCCccEEEEEecCccc-------chhhhHHHHHHHH
Confidence 389999999999999999997631 35677999999999992 2467999998653
No 24
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=96.27 E-value=0.007 Score=51.40 Aligned_cols=47 Identities=21% Similarity=0.260 Sum_probs=39.2
Q ss_pred CCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHH
Q psy571 9 TDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAA 66 (162)
Q Consensus 9 ~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~ 66 (162)
.|.-+|+|++|++++.|... ..++.+|.|+|..+|| .+..|+++|.+
T Consensus 99 ~D~k~g~a~~l~~~~~l~~~---~~~~~~v~~~~~~~EE--------~g~~G~~~~~~ 145 (361)
T TIGR01883 99 ADDKAGVAAMLEAMDVLSTE---ETPHGTIEFIFTVKEE--------LGLIGMRLFDE 145 (361)
T ss_pred ccccHHHHHHHHHHHHHHhc---CCCCCCEEEEEEcccc--------cCchhHhHhCh
Confidence 67789999999999999763 3356789999999999 56779998875
No 25
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=96.22 E-value=0.015 Score=50.95 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=52.9
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCccccccccee
Q psy571 8 ATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMD 87 (162)
Q Consensus 8 A~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~i~ 87 (162)
|-||=.|||+|||++|.|+. ..++..+-|+|---|| -|+-|++..+... +-+
T Consensus 178 alDdR~gva~lle~lk~l~~----~~~~~~vy~v~tvqEE--------VGlrGA~~~a~~i----------------~pd 229 (355)
T COG1363 178 ALDDRAGVAALLELLKELKG----IELPADVYFVASVQEE--------VGLRGAKTSAFRI----------------KPD 229 (355)
T ss_pred eccchHhHHHHHHHHHHhcc----CCCCceEEEEEecchh--------hccchhhcccccc----------------CCC
Confidence 67999999999999999952 5788899999999999 8999998776442 346
Q ss_pred eEEEeccCCCCCC
Q psy571 88 MLVLLDLLGTSNP 100 (162)
Q Consensus 88 ~~i~lDmvG~~~~ 100 (162)
+.|-+|..+..+.
T Consensus 230 ~aiavd~~~~~d~ 242 (355)
T COG1363 230 IAIAVDVTPAGDT 242 (355)
T ss_pred EEEEEecccccCC
Confidence 7788888877554
No 26
>PRK08262 hypothetical protein; Provisional
Probab=96.19 E-value=0.012 Score=52.57 Aligned_cols=54 Identities=24% Similarity=0.196 Sum_probs=45.2
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHh
Q psy571 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWER 70 (162)
Q Consensus 7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~ 70 (162)
|+.|+=+|+|++|..++.|.+.. ..++.+|.|+|..+|| .+..|++++++.+..
T Consensus 151 G~~D~Kg~~aa~L~A~~~l~~~~--~~l~~~I~llf~~dEE--------~g~~G~~~l~~~l~~ 204 (486)
T PRK08262 151 GALDDKGSLVAILEAAEALLAQG--FQPRRTIYLAFGHDEE--------VGGLGARAIAELLKE 204 (486)
T ss_pred CccccchhHHHHHHHHHHHHHcC--CCCCCeEEEEEecccc--------cCCcCHHHHHHHHHH
Confidence 99999999999999999998631 2466799999999999 555699999977654
No 27
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=96.16 E-value=0.0067 Score=54.12 Aligned_cols=45 Identities=31% Similarity=0.364 Sum_probs=36.3
Q ss_pred CCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHH
Q psy571 10 DSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW 68 (162)
Q Consensus 10 DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~ 68 (162)
|+..|||++|++++. . ..+...|.++|+..|| .++.||++++..+
T Consensus 109 D~k~gva~~l~~~~~--~----~~~~~~i~~~~~~dEE--------~g~~Gs~~l~~~~ 153 (477)
T TIGR01893 109 DNGIGVAMGLAILED--N----NLKHPPLELLFTVDEE--------TGMDGALGLDENW 153 (477)
T ss_pred cccHHHHHHHHHHhc--C----CCCCCCEEEEEEeccc--------cCchhhhhcChhh
Confidence 889999999998775 1 2334589999999999 6888999997543
No 28
>PRK08652 acetylornithine deacetylase; Provisional
Probab=96.14 E-value=0.0096 Score=50.05 Aligned_cols=51 Identities=22% Similarity=0.331 Sum_probs=42.5
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHH
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW 68 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~ 68 (162)
.|+.|+=+|+|++|.+++.|.. ..++.+|.|+|..+|| .+..|++++.+.+
T Consensus 83 rG~~D~Kg~~a~~l~a~~~l~~----~~~~~~v~~~~~~dEE--------~g~~G~~~~~~~~ 133 (347)
T PRK08652 83 TGACDAKGGVAAILLALEELGK----EFEDLNVGIAFVSDEE--------EGGRGSALFAERY 133 (347)
T ss_pred ccchhhhHHHHHHHHHHHHHhh----cccCCCEEEEEecCcc--------cCChhHHHHHHhc
Confidence 4899999999999999999975 3345689999999999 5557999887653
No 29
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=96.09 E-value=0.018 Score=49.27 Aligned_cols=52 Identities=21% Similarity=0.269 Sum_probs=42.1
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCc-cchHHHHHH
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSI-WGARHLAAK 67 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l-~GS~~~a~~ 67 (162)
.|+.|+-.|+|++|..++.|...- .+++.+|.|+|..+|| .+. .|++++++.
T Consensus 113 rG~~D~K~g~~a~l~a~~~l~~~~--~~~~~~v~~~~~~dEE--------~g~~~g~~~~~~~ 165 (400)
T PRK13983 113 RGSEDNGQGIVSSLLALKALMDLG--IRPKYNLGLAFVSDEE--------TGSKYGIQYLLKK 165 (400)
T ss_pred cCccCccchHHHHHHHHHHHHHhC--CCCCCcEEEEEEeccc--------cCCcccHHHHHhh
Confidence 479999999999999999997631 2567799999999999 333 588888865
No 30
>PRK09133 hypothetical protein; Provisional
Probab=96.08 E-value=0.023 Score=50.50 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=44.7
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHH
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWE 69 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~ 69 (162)
.|+.|+-+|+|++|++++.|...- ..++.+|.|+|...||. .+..|++++.+...
T Consensus 137 RGa~D~Kg~~aa~l~a~~~l~~~~--~~~~~~i~~~~~~dEE~-------~g~~G~~~l~~~~~ 191 (472)
T PRK09133 137 RGTSDDKADAAIWVATLIRLKREG--FKPKRDIILALTGDEEG-------TPMNGVAWLAENHR 191 (472)
T ss_pred cCcccchHHHHHHHHHHHHHHhcC--CCCCCCEEEEEECcccc-------CccchHHHHHHHHh
Confidence 499999999999999999997631 24677999999999992 35689999987643
No 31
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=96.08 E-value=0.014 Score=49.34 Aligned_cols=51 Identities=22% Similarity=0.044 Sum_probs=43.0
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHH
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW 68 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~ 68 (162)
.|+.|+=+|+|++|.+++.|.+ .+.+.+|.|+|..+|| .+..|++++++..
T Consensus 94 rG~~D~Kg~~a~~l~a~~~l~~----~~~~~~v~~~~~~~EE--------~g~~G~~~~~~~~ 144 (364)
T TIGR01892 94 RGTCDMKGFLACALAAAPDLAA----EQLKKPLHLALTADEE--------VGCTGAPKMIEAG 144 (364)
T ss_pred cCccccchHHHHHHHHHHHHHh----cCcCCCEEEEEEeccc--------cCCcCHHHHHHhc
Confidence 3799999999999999999976 2346689999999999 5667999998664
No 32
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=96.06 E-value=0.013 Score=50.40 Aligned_cols=49 Identities=22% Similarity=0.175 Sum_probs=41.7
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 67 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~ 67 (162)
.|+.|+-.|+|++|+.++.|.. .. +.+|.|+|..+|| .+..|++++++.
T Consensus 110 rG~~D~k~~~~~~l~a~~~l~~----~~-~~~v~~~~~~~EE--------~g~~G~~~~~~~ 158 (394)
T PRK08651 110 RGASDMKGGIAALLAAFERLDP----AG-DGNIELAIVPDEE--------TGGTGTGYLVEE 158 (394)
T ss_pred cCccccchHHHHHHHHHHHHHh----cC-CCCEEEEEecCcc--------ccchhHHHHHhc
Confidence 4889999999999999999976 23 6899999999999 555799988864
No 33
>PRK08596 acetylornithine deacetylase; Validated
Probab=96.06 E-value=0.013 Score=51.32 Aligned_cols=52 Identities=21% Similarity=0.122 Sum_probs=43.5
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 67 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~ 67 (162)
.|+.|+=+|+|++|..++.|...- .+++.+|.|+|..+|| .+..|++++++.
T Consensus 114 rG~~D~Kgg~a~~l~a~~~l~~~~--~~~~~~v~~~~~~dEE--------~g~~G~~~~~~~ 165 (421)
T PRK08596 114 RGAADMKGGLAGALFAIQLLHEAG--IELPGDLIFQSVIGEE--------VGEAGTLQCCER 165 (421)
T ss_pred ccccccchHHHHHHHHHHHHHHcC--CCCCCcEEEEEEeccc--------cCCcCHHHHHhc
Confidence 589999999999999999997631 2457789999999999 566799988754
No 34
>PRK08554 peptidase; Reviewed
Probab=95.89 E-value=0.033 Score=49.45 Aligned_cols=52 Identities=21% Similarity=0.119 Sum_probs=41.6
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHH
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWE 69 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~ 69 (162)
.|+.|.-+|+|++|..++.|.. ..++.+|.|+|...|| .+..|++++.+.+.
T Consensus 99 rG~~DmKgg~aa~l~A~~~l~~----~~~~~~i~l~~~~dEE--------~g~~~~~~~~~~~~ 150 (438)
T PRK08554 99 RGSADDKGNVASVMLALKELSK----EPLNGKVIFAFTGDEE--------IGGAMAMHIAEKLR 150 (438)
T ss_pred CCcccchHHHHHHHHHHHHHHh----cCCCCCEEEEEEcccc--------cCccccHHHHHHHH
Confidence 5999999999999999999976 2356789999999999 44445667776553
No 35
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=95.85 E-value=0.016 Score=50.74 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=40.8
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCcc--ccccCCCCCccchHHHH
Q psy571 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEA--FNEWSAEDSIWGARHLA 65 (162)
Q Consensus 7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~--~~~w~~~~~l~GS~~~a 65 (162)
|.-|+.+|+|++|++++.|...- .++..+|.|+++..||. |. .++.||++++
T Consensus 92 g~~D~k~Gv~a~l~a~~~l~~~~--~~~~~~i~v~~~~dEE~~~f~-----~~~~Gs~~~~ 145 (414)
T PRK12891 92 GRYDGIYGVLGGLEVVRALNDAG--IETERPVDVVIWTNEEGSRFA-----PSMVGSGVFF 145 (414)
T ss_pred ccccchhhHHHHHHHHHHHHHcC--CCCCCCeEEEEecccccCcCC-----cccccHHHHh
Confidence 55799999999999999998741 35678999999999992 11 2467998774
No 36
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=95.85 E-value=0.027 Score=48.69 Aligned_cols=52 Identities=19% Similarity=0.156 Sum_probs=42.1
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCC-ccchHHHHHH
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDS-IWGARHLAAK 67 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~-l~GS~~~a~~ 67 (162)
.|+.|.=+|+|++|.+++.|.... .+++.+|.|+|...|| .+ ..|++++.+.
T Consensus 108 rG~~D~K~~~aa~l~a~~~l~~~~--~~~~~~v~l~~~~dEE--------~g~~~G~~~~~~~ 160 (400)
T TIGR01880 108 RGAQDMKCVGVQYLEAVRNLKASG--FKFKRTIHISFVPDEE--------IGGHDGMEKFAKT 160 (400)
T ss_pred cccccccHHHHHHHHHHHHHHHcC--CCCCceEEEEEeCCcc--------cCcHhHHHHHHHh
Confidence 388899999999999999997631 2456789999999999 43 5699988854
No 37
>PRK07522 acetylornithine deacetylase; Provisional
Probab=95.73 E-value=0.027 Score=48.12 Aligned_cols=53 Identities=21% Similarity=0.100 Sum_probs=43.6
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHh
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWER 70 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~ 70 (162)
.|+.|.=.++|++|.+++.|.. .+.+.+|.|+|...|| .+..|++++.+...+
T Consensus 100 rG~~D~Kg~~a~~l~a~~~l~~----~~~~~~i~~~~~~dEE--------~g~~G~~~l~~~~~~ 152 (385)
T PRK07522 100 RGTCDMKGFIAAALAAVPELAA----APLRRPLHLAFSYDEE--------VGCLGVPSMIARLPE 152 (385)
T ss_pred ccccccchHHHHHHHHHHHHHh----CCCCCCEEEEEEeccc--------cCCccHHHHHHHhhh
Confidence 3788988999999999999976 3456789999999999 555799999876433
No 38
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=95.59 E-value=0.037 Score=47.16 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=43.8
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHh
Q psy571 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWER 70 (162)
Q Consensus 7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~ 70 (162)
|+.|+=.|+|++|..++.|.... .+++.+|.|+|..+||. .+..|++++.+.+.+
T Consensus 96 G~~D~Kgg~aa~l~a~~~l~~~~--~~~~~~i~~~~~~~EE~-------~~~~G~~~~~~~~~~ 150 (375)
T PRK13009 96 GAADMKGSLAAFVVAAERFVAAH--PDHKGSIAFLITSDEEG-------PAINGTVKVLEWLKA 150 (375)
T ss_pred CCccChHHHHHHHHHHHHHHHhc--CCCCceEEEEEEeeccc-------ccccCHHHHHHHHHH
Confidence 88899999999999999887631 34567999999999992 245799999876544
No 39
>PRK07473 carboxypeptidase; Provisional
Probab=95.53 E-value=0.046 Score=47.30 Aligned_cols=52 Identities=19% Similarity=0.156 Sum_probs=42.6
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 67 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~ 67 (162)
.|+.|.=+|+|++|..++.|.... .+.+..|.|+|...|| .+..|++++.+.
T Consensus 108 rG~~D~Kgglaa~l~A~~~l~~~~--~~~~~~v~~~~~~dEE--------~g~~g~~~~~~~ 159 (376)
T PRK07473 108 PGILDMKGGNYLALEAIRQLARAG--ITTPLPITVLFTPDEE--------VGTPSTRDLIEA 159 (376)
T ss_pred CchhhchHHHHHHHHHHHHHHHcC--CCCCCCEEEEEeCCcc--------cCCccHHHHHHH
Confidence 489999999999999999997631 1345579999999999 567899988864
No 40
>PRK09864 putative peptidase; Provisional
Probab=95.44 E-value=0.029 Score=49.02 Aligned_cols=60 Identities=23% Similarity=0.271 Sum_probs=47.9
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcccccccce
Q psy571 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRM 86 (162)
Q Consensus 7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~i 86 (162)
-|-||=+|||+|||++|.|+. ++..|.|+|..-|| -|+-|++.-|.... .
T Consensus 172 kalDnR~g~~~lle~l~~l~~------~~~~vy~v~TvQEE--------vGlrGA~~aa~~i~----------------P 221 (356)
T PRK09864 172 KALDNRIGCAMMAELLQTVNN------PEITLYGVGSVEEE--------VGLRGAQTSAEHIK----------------P 221 (356)
T ss_pred EeCccHHHHHHHHHHHHHhhc------CCCeEEEEEEcchh--------cchHHHHHHHhcCC----------------C
Confidence 377999999999999999953 56889999999999 89999987664421 2
Q ss_pred eeEEEeccCC
Q psy571 87 DMLVLLDLLG 96 (162)
Q Consensus 87 ~~~i~lDmvG 96 (162)
+..|.+|+.-
T Consensus 222 DiaIavDvt~ 231 (356)
T PRK09864 222 DVVIVLDTAV 231 (356)
T ss_pred CEEEEEeccc
Confidence 5578888654
No 41
>PRK06156 hypothetical protein; Provisional
Probab=95.33 E-value=0.043 Score=49.69 Aligned_cols=51 Identities=16% Similarity=0.207 Sum_probs=42.1
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 67 (162)
Q Consensus 7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~ 67 (162)
|+.|+=.|+|++|...+.|.... .+++..|.|+|...|| .+..|++++...
T Consensus 151 G~~D~Kgg~a~~l~a~~~l~~~~--~~~~~~i~~~~~~dEE--------~g~~G~~~~~~~ 201 (520)
T PRK06156 151 GTEDDKGAIVTALYAMKAIKDSG--LPLARRIELLVYTTEE--------TDGDPLKYYLER 201 (520)
T ss_pred CcccchHHHHHHHHHHHHHHHcC--CCCCceEEEEEecccc--------cCchhHHHHHHh
Confidence 88999999999999999887631 2455789999999999 667899988854
No 42
>PRK07318 dipeptidase PepV; Reviewed
Probab=95.30 E-value=0.038 Score=49.15 Aligned_cols=52 Identities=15% Similarity=0.136 Sum_probs=43.6
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 67 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~ 67 (162)
.|+.|.=.|+|++|...+.|...- .+++..|.|+|...|| .|.+|++++++.
T Consensus 114 RG~~DmKgg~aa~l~Al~~l~~~g--~~~~~~i~l~~~~DEE--------~g~~G~~~l~~~ 165 (466)
T PRK07318 114 RGTSDDKGPTMAAYYALKIIKELG--LPLSKKVRFIVGTDEE--------SGWKCMDYYFEH 165 (466)
T ss_pred cccccCcHHHHHHHHHHHHHHHcC--CCCCccEEEEEEcccc--------cCchhHHHHHHh
Confidence 389999999999999999997631 2446789999999999 677899999875
No 43
>PRK09104 hypothetical protein; Validated
Probab=95.29 E-value=0.068 Score=47.36 Aligned_cols=52 Identities=13% Similarity=0.077 Sum_probs=41.6
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 67 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~ 67 (162)
.|+.|+=.|||++|+.++.|.+.. ..++.+|.|+|...|| .|..|.+++.+.
T Consensus 124 RG~~D~Kg~laa~l~a~~~l~~~~--~~~~~~i~~~~~~dEE--------~g~~g~~~~l~~ 175 (464)
T PRK09104 124 RGASDDKGQLMTFVEACRAWKAVT--GSLPVRVTILFEGEEE--------SGSPSLVPFLEA 175 (464)
T ss_pred ecccCCcHHHHHHHHHHHHHHHhc--CCCCCcEEEEEECccc--------cCCccHHHHHHh
Confidence 389999999999999999998741 2456789999999999 555677777643
No 44
>PRK05111 acetylornithine deacetylase; Provisional
Probab=95.24 E-value=0.04 Score=47.13 Aligned_cols=50 Identities=26% Similarity=0.237 Sum_probs=41.2
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 67 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~ 67 (162)
.|+.|.=+++|++|...+.|.. ...+.+|.|+|..+|| .+..|++++++.
T Consensus 107 rG~~D~Kg~~a~~l~a~~~l~~----~~~~~~i~~~~~~~EE--------~g~~G~~~~~~~ 156 (383)
T PRK05111 107 LGTADMKGFFAFILEALRDIDL----TKLKKPLYILATADEE--------TSMAGARAFAEA 156 (383)
T ss_pred cccccccHHHHHHHHHHHHHhh----cCCCCCeEEEEEeccc--------cCcccHHHHHhc
Confidence 3788888899999999999976 3345689999999999 555799988864
No 45
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=95.20 E-value=0.046 Score=46.43 Aligned_cols=48 Identities=25% Similarity=0.356 Sum_probs=40.3
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 67 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~ 67 (162)
.||.|+=.|+|++|..++.|... ..+|.|+|..+|| .+..|++++.+.
T Consensus 88 rG~~DmKgg~aa~l~a~~~l~~~------~~~i~~~~~~dEE--------~g~~G~~~l~~~ 135 (346)
T PRK00466 88 RGAVDAKGPLISMIIAAWLLNEK------GIKVMVSGLADEE--------STSIGAKELVSK 135 (346)
T ss_pred cCccccchHHHHHHHHHHHHHHc------CCCEEEEEEcCcc--------cCCccHHHHHhc
Confidence 59999999999999999998652 2468999999999 556799998854
No 46
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=95.03 E-value=0.051 Score=47.11 Aligned_cols=53 Identities=26% Similarity=0.346 Sum_probs=40.6
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCcc--ccccCCCCCccchHHHHH
Q psy571 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEA--FNEWSAEDSIWGARHLAA 66 (162)
Q Consensus 7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~--~~~w~~~~~l~GS~~~a~ 66 (162)
|-.|+-.|+|++|++++.|...- .+++..|.|+++..||. |. .++.||++++.
T Consensus 90 g~~dg~~Gvaa~l~a~~~l~~~~--~~~~~~i~~~~~~dEE~~~~~-----~~~~Gs~~~~~ 144 (412)
T PRK12892 90 GRYDGALGVVAGLEAARALNEHG--IATRHPLDVVAWCDEEGSRFT-----PGFLGSRAYAG 144 (412)
T ss_pred CcccchHHHHHHHHHHHHHHHcC--CCCCCCeEEEEecCccccccc-----CccccHHHHHc
Confidence 33577789999999999998731 24677899999999992 10 15789999984
No 47
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=95.00 E-value=0.067 Score=45.16 Aligned_cols=50 Identities=30% Similarity=0.391 Sum_probs=38.3
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 67 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~ 67 (162)
.|++|.-+|+|++|.+++.|.. ++.+|.|+|...||.. .+.-|++.+...
T Consensus 91 rG~~D~Kg~~a~~l~a~~~l~~------~~~~i~~~~~~~EE~~------~~~~G~~~~~~~ 140 (352)
T PRK13007 91 CGASDMKSGLAVMLHLAATLAE------PAHDLTLVFYDCEEVE------AEANGLGRLARE 140 (352)
T ss_pred cCcccccHHHHHHHHHHHHhhc------cCCCeEEEEEeccccc------CCcccHHHHHHh
Confidence 4899999999999999999932 4568999999999920 012477777654
No 48
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=94.95 E-value=0.059 Score=45.49 Aligned_cols=49 Identities=24% Similarity=0.310 Sum_probs=41.6
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHH
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW 68 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~ 68 (162)
.|+.|.-+|+|++|+..+.|... ...|.|++...|| .+..|++++.+.+
T Consensus 78 rG~~D~Kg~~aa~l~a~~~l~~~------~~~i~~~~~~dEE--------~g~~G~~~~~~~~ 126 (336)
T TIGR01902 78 RGAVDAKGPLIAMIFATWLLNEK------GIKVIVSGLVDEE--------SSSKGAREVIDKN 126 (336)
T ss_pred ecccCCCcHHHHHHHHHHHHHhC------CCcEEEEEEeCcc--------cCCccHHHHHhhc
Confidence 48999999999999999998652 3579999999999 6778999998663
No 49
>PRK07907 hypothetical protein; Provisional
Probab=94.90 E-value=0.058 Score=47.62 Aligned_cols=48 Identities=25% Similarity=0.186 Sum_probs=40.7
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 67 (162)
Q Consensus 7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~ 67 (162)
|+.|+=.|+|++|..++.| . .+++.+|.|++...|| .|..|++++++.
T Consensus 121 G~~D~Kg~~aa~l~a~~~l-~----~~~~~~i~~~~~~dEE--------~g~~g~~~~l~~ 168 (449)
T PRK07907 121 GAADDKGGIAMHLAALRAL-G----GDLPVGVTVFVEGEEE--------MGSPSLERLLAE 168 (449)
T ss_pred CccCCcHHHHHHHHHHHHh-c----cCCCCcEEEEEEcCcc--------cCCccHHHHHHh
Confidence 9999999999999999999 3 3456789999888888 566799998865
No 50
>PRK06446 hypothetical protein; Provisional
Probab=94.88 E-value=0.062 Score=47.29 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=41.8
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 67 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~ 67 (162)
.||.|.=+|+|++|...+.|... .+++.+|.|+|...|| .|..|++++.+.
T Consensus 99 RGa~DmKgglaa~l~A~~~l~~~---~~~~~~i~~~~~~dEE--------~g~~g~~~~l~~ 149 (436)
T PRK06446 99 RGASDNKGTLMARLFAIKHLIDK---HKLNVNVKFLYEGEEE--------IGSPNLEDFIEK 149 (436)
T ss_pred EeccCCcHHHHHHHHHHHHHHHc---CCCCCCEEEEEEcccc--------cCCHhHHHHHHH
Confidence 38999999999999999888653 3456799999999999 566788888755
No 51
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=94.87 E-value=0.054 Score=47.00 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=41.2
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 67 (162)
Q Consensus 7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~ 67 (162)
|.-|+-.|+|++|.+++.|...- .+++.+|.|+|..+||.- +.. .++.||++++..
T Consensus 92 g~~dgk~gvaa~l~a~~~l~~~~--~~~~~~v~~~~~~dEE~g--~~~-~~~~G~~~~~~~ 147 (412)
T PRK12893 92 GRFDGALGVLAALEVVRTLNDAG--IRTRRPIEVVSWTNEEGA--RFA-PAMLGSGVFTGA 147 (412)
T ss_pred CcccchhhHHHHHHHHHHHHHcC--CCCCCCeEEEEEcccccc--ccc-cccccHHHHhCc
Confidence 34588899999999999998731 245779999999999920 000 137899988743
No 52
>PRK07338 hypothetical protein; Provisional
Probab=94.79 E-value=0.078 Score=45.80 Aligned_cols=51 Identities=22% Similarity=0.214 Sum_probs=41.4
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 67 (162)
Q Consensus 7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~ 67 (162)
|+.|.=+|+|++|..++.|.... .+.+.+|.|+|-.+|| .|..|++.+.+.
T Consensus 126 G~~DmKgg~aa~l~a~~~l~~~~--~~~~~~i~~~~~~dEE--------~g~~g~~~~~~~ 176 (402)
T PRK07338 126 GVADMKGGIVVMLAALLAFERSP--LADKLGYDVLINPDEE--------IGSPASAPLLAE 176 (402)
T ss_pred cHHhhhHHHHHHHHHHHHHHhcC--CCCCCCEEEEEECCcc--------cCChhhHHHHHH
Confidence 88999999999999999997531 2346789999999999 566788887765
No 53
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=94.50 E-value=0.084 Score=46.02 Aligned_cols=56 Identities=16% Similarity=0.277 Sum_probs=41.0
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 67 (162)
Q Consensus 7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~ 67 (162)
|..|+-.|+|++|..++.|...- .+++..|.|+|...||.- .+ ..++.||+++++.
T Consensus 89 g~~d~k~g~aa~l~a~~~l~~~~--~~~~~~i~~~~~~dEE~g-~~--g~~~~G~~~~~~~ 144 (413)
T PRK09290 89 GRFDGPLGVLAGLEAVRTLNERG--IRPRRPIEVVAFTNEEGS-RF--GPAMLGSRVFTGA 144 (413)
T ss_pred CCcCCHHHHHHHHHHHHHHHHcC--CCCCCCeEEEEEcCCccc-cc--cCccccHHHHHcc
Confidence 45688899999999999998631 245678999999999920 00 0156799988743
No 54
>PRK13381 peptidase T; Provisional
Probab=94.44 E-value=0.088 Score=45.71 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=38.6
Q ss_pred CCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHH
Q psy571 9 TDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAA 66 (162)
Q Consensus 9 ~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~ 66 (162)
.|.=+|+|++|.+++.|... .....+|.|+|..+|| .+..|++++..
T Consensus 137 ~DmKgg~aa~l~a~~~l~~~---~~~~g~i~~~~~~dEE--------~g~~G~~~~~~ 183 (404)
T PRK13381 137 ADNKAAIAVVMTLLENLTEN---EVEHGDIVVAFVPDEE--------IGLRGAKALDL 183 (404)
T ss_pred cccHHHHHHHHHHHHHHHhc---CCCCCCEEEEEEcccc--------cccccHHHHHH
Confidence 78999999999999999763 2345689999999999 56679998853
No 55
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=94.42 E-value=0.088 Score=47.01 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=43.3
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 67 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~ 67 (162)
-|+.|+=.|+|++|..++.|+... .+++.+|.|+|...|| .+..|++++++.
T Consensus 113 RG~~D~Kg~~~a~l~a~~~l~~~~--~~~~~~i~~~~~~dEE--------~g~~g~~~~~~~ 164 (466)
T TIGR01886 113 RGASDDKGPSLAAYYAMKILKELG--LPPSKKIRFVVGTNEE--------TGWVDMDYYFKH 164 (466)
T ss_pred cCccccchHHHHHHHHHHHHHHhC--CCCCCCEEEEEECccc--------cCcccHHHHHhc
Confidence 389999999999999999997631 3457799999999999 566799988864
No 56
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=94.42 E-value=0.1 Score=44.59 Aligned_cols=43 Identities=28% Similarity=0.282 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHH
Q psy571 13 VPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAA 66 (162)
Q Consensus 13 sg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~ 66 (162)
+++|++|.+++.|.... .+.+.+|.|+|...|| .+ .|++++.+
T Consensus 93 ~~~a~~l~a~~~l~~~~--~~~~~~i~~~~~~dEE--------~~-~G~~~~~~ 135 (363)
T TIGR01891 93 LHTAILLGTAKLLKKLA--DLLEGTVRLIFQPAEE--------GG-GGATKMIE 135 (363)
T ss_pred HHHHHHHHHHHHHHhch--hhCCceEEEEEeecCc--------Cc-chHHHHHH
Confidence 68899999998887631 2356789999999999 43 69988864
No 57
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=94.24 E-value=0.14 Score=44.54 Aligned_cols=50 Identities=20% Similarity=0.083 Sum_probs=39.3
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCC-ccchHHHHH
Q psy571 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDS-IWGARHLAA 66 (162)
Q Consensus 7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~-l~GS~~~a~ 66 (162)
|+.|.=+|+|++|..++.|.... .+++.+|.|+|-..|| .+ ..|.+++++
T Consensus 120 Ga~D~Kg~~aa~l~a~~~l~~~~--~~~~~~v~~~~~~dEE--------~g~~~g~~~l~~ 170 (427)
T PRK13013 120 GACDMKGGLAASIIAAEAFLAVY--PDFAGSIEISGTADEE--------SGGFGGVAYLAE 170 (427)
T ss_pred cccccchHHHHHHHHHHHHHHhC--CCCCccEEEEEEeccc--------cCChhHHHHHHh
Confidence 89999999999999999998731 2456789999999999 33 336666654
No 58
>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]
Probab=94.10 E-value=0.081 Score=46.09 Aligned_cols=65 Identities=18% Similarity=0.287 Sum_probs=51.7
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCccccccccee
Q psy571 8 ATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMD 87 (162)
Q Consensus 8 A~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~i~ 87 (162)
||||-||+|++.=+|+.|... +...+-+|||- ....||-.+-.+-+ .-|++|+
T Consensus 193 aNdn~SG~all~~lak~l~~~----ktrysYRfvf~------------P~TiGsi~wLsrne-----------e~lkhvk 245 (435)
T COG4310 193 ANDNLSGLALLTFLAKALKSL----KTRYSYRFVFA------------PETIGSIVWLSRNE-----------ECLKHVK 245 (435)
T ss_pred ccCccchHHHHHHHHHHHHhc----cceeeEEEEec------------ccccchhhhHhcch-----------hHHhhhh
Confidence 899999999999999999984 57899999996 33568864433211 4578999
Q ss_pred eEEEeccCCCCC
Q psy571 88 MLVLLDLLGTSN 99 (162)
Q Consensus 88 ~~i~lDmvG~~~ 99 (162)
..+.+-++|...
T Consensus 246 ~GlVlsClGD~g 257 (435)
T COG4310 246 HGLVLSCLGDGG 257 (435)
T ss_pred cceEEEEecCCC
Confidence 999999999864
No 59
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=94.00 E-value=0.12 Score=46.05 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=42.6
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 67 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~ 67 (162)
.|+.|.=.|+|++|..++.|.... .+++..|.|+|...|| .+..|++++.+.
T Consensus 102 RGa~D~KG~laa~l~a~~~l~~~~--~~~~~~i~~~~~~dEE--------~g~~g~~~~l~~ 153 (447)
T TIGR01887 102 RGTLDDKGPTIAALYAMKILKELG--LKLKKKIRFIFGTDEE--------TGWACIDYYFEH 153 (447)
T ss_pred CCcccCcHHHHHHHHHHHHHHHcC--CCCCCcEEEEEECCcc--------cCcHhHHHHHHh
Confidence 388999999999999999997631 2457789999999999 677898887753
No 60
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=93.92 E-value=0.089 Score=46.00 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=38.6
Q ss_pred CCccCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHH
Q psy571 3 SPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLA 65 (162)
Q Consensus 3 ~~f~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a 65 (162)
....| .|.=+|+|+||.+++.|.... ..+..+|.|+|-.+|| .+ .|++++.
T Consensus 136 ~~l~G-~D~KgglAa~l~A~~~L~e~~--~~~~g~I~~~ft~dEE--------~g-~Ga~~l~ 186 (410)
T TIGR01882 136 TTLLG-ADDKAGIAEIMTAADYLINHP--EIKHGTIRVAFTPDEE--------IG-RGAHKFD 186 (410)
T ss_pred CEeec-ccCHHHHHHHHHHHHHHHhCC--CCCCCCEEEEEECccc--------CC-cCcchhh
Confidence 34567 667789999999999997621 1235679999999999 45 4888775
No 61
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=93.83 E-value=0.2 Score=42.75 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=41.6
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHH
Q psy571 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWE 69 (162)
Q Consensus 7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~ 69 (162)
|+.|.=.|+|++|..++.|.+.. .+.+.+|.|+|..+||. .+..|++.+.+.+.
T Consensus 93 G~~D~Kgg~a~~l~a~~~l~~~~--~~~~~~v~~~~~~dEE~-------~~~~G~~~~~~~~~ 146 (370)
T TIGR01246 93 GAADMKGSLAAFIVAAERFVKKN--PDHKGSISLLITSDEEG-------TAIDGTKKVVETLM 146 (370)
T ss_pred ccccchHHHHHHHHHHHHHHHhc--CCCCCcEEEEEEecccc-------CCCcCHHHHHHHHH
Confidence 77788889999999988776631 24567899999999992 23579999887653
No 62
>PRK07079 hypothetical protein; Provisional
Probab=93.66 E-value=0.18 Score=44.83 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=43.0
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHH
Q psy571 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW 68 (162)
Q Consensus 7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~ 68 (162)
|+.|.=+|+|++|...+.|.+... .+++.+|.|+|-..|| .+..|++++++..
T Consensus 124 Ga~DmKgg~aa~l~A~~~l~~~~~-~~~~~~i~~~~~~dEE--------~g~~G~~~l~~~~ 176 (469)
T PRK07079 124 GTADNKGQHTINLAALEQVLAARG-GRLGFNVKLLIEMGEE--------IGSPGLAEVCRQH 176 (469)
T ss_pred eccCCcHHHHHHHHHHHHHHHhcC-CCCCCCEEEEEECccc--------cCCccHHHHHHHh
Confidence 899999999999999998854210 2456789999999999 5668999998764
No 63
>PRK07205 hypothetical protein; Provisional
Probab=93.53 E-value=0.17 Score=44.59 Aligned_cols=51 Identities=20% Similarity=0.209 Sum_probs=41.7
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHH
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAA 66 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~ 66 (162)
.|+.|+=.|+|++|...+.|...- .+++.+|.|+|...|| .+..|+++|.+
T Consensus 112 RGa~DmKgglaa~l~Al~~l~~~~--~~~~~~i~l~~~~dEE--------~g~~g~~~~~~ 162 (444)
T PRK07205 112 RGTQDDKGPSMAALYAVKALLDAG--VQFNKRIRFIFGTDEE--------TLWRCMNRYNE 162 (444)
T ss_pred CCcccCcHHHHHHHHHHHHHHHcC--CCCCCcEEEEEECCcc--------cCcccHHHHHh
Confidence 389999999999999999987631 3456789999999999 45568888775
No 64
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=93.38 E-value=0.15 Score=43.32 Aligned_cols=37 Identities=19% Similarity=0.118 Sum_probs=32.9
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCc
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEE 47 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE 47 (162)
.|+.|.=.|+|++|+.++.| . .+++.+|.|++..+||
T Consensus 87 rG~~D~Kg~~aa~l~A~~~l-~----~~~~~~i~~~~~~dEE 123 (348)
T PRK04443 87 RGSVDAKGPLAAFAAAAARL-E----ALVRARVSFVGAVEEE 123 (348)
T ss_pred ecccccccHHHHHHHHHHHh-c----ccCCCCEEEEEEcccc
Confidence 48999999999999999999 3 4567789999999999
No 65
>PRK08201 hypothetical protein; Provisional
Probab=93.32 E-value=0.21 Score=44.05 Aligned_cols=51 Identities=14% Similarity=0.029 Sum_probs=40.7
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 67 (162)
Q Consensus 7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~ 67 (162)
|+.|.=.|+|++|...+.|.... ...+.+|.|+|...|| .|-.|++++.+.
T Consensus 117 G~~DmKgglaa~l~a~~~l~~~~--~~~~~~i~~~~~~dEE--------~g~~g~~~~l~~ 167 (456)
T PRK08201 117 GASDDKGQVFMHLKAVEALLKVE--GTLPVNVKFCIEGEEE--------IGSPNLDSFVEE 167 (456)
T ss_pred ecccCcHHHHHHHHHHHHHHHhc--CCCCCCEEEEEEcccc--------cCCccHHHHHHh
Confidence 89999999999999999996531 2346789999999999 455677777654
No 66
>PRK13004 peptidase; Reviewed
Probab=93.31 E-value=0.2 Score=43.47 Aligned_cols=52 Identities=19% Similarity=0.155 Sum_probs=39.8
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 67 (162)
Q Consensus 7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~ 67 (162)
|+.|+-+|+|++|..++.|...- .+++.+|.|+|..+||. .+-.|++++++.
T Consensus 107 G~~D~Kg~~aa~l~a~~~l~~~~--~~~~~~i~~~~~~~EE~-------~~g~~~~~~~~~ 158 (399)
T PRK13004 107 GTSDQKGGMASMVYAAKIIKDLG--LDDEYTLYVTGTVQEED-------CDGLCWRYIIEE 158 (399)
T ss_pred CccccchHHHHHHHHHHHHHhcC--CCCCCeEEEEEEccccc-------CcchhHHHHHHh
Confidence 78899999999999999998731 24567899999999992 123567766654
No 67
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=93.11 E-value=0.17 Score=45.78 Aligned_cols=47 Identities=23% Similarity=0.146 Sum_probs=34.8
Q ss_pred cCCC---CCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHH
Q psy571 6 IGAT---DSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAA 66 (162)
Q Consensus 6 ~GA~---DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~ 66 (162)
.|++ |+.+|+|++|.+.+.. ......|.|+|...|| .|+.||+++..
T Consensus 108 ~Gt~lgaD~k~gva~~l~~l~~~------~~~~~~i~~l~t~dEE--------~G~~ga~~l~~ 157 (485)
T PRK15026 108 RGTTLGADNGIGMASALAVLADE------NVVHGPLEVLLTMTEE--------AGMDGAFGLQS 157 (485)
T ss_pred CCccccCccHHHHHHHHHHHHhC------CCCCCCEEEEEEcccc--------cCcHhHHHhhh
Confidence 4664 8899999998765221 2235579999999999 78889998853
No 68
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=93.01 E-value=0.22 Score=43.02 Aligned_cols=55 Identities=27% Similarity=0.305 Sum_probs=40.6
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 67 (162)
Q Consensus 7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~ 67 (162)
||.|.=+|+|++|..++.|.....+..++.+|.|+|...||.- .+..|++++++.
T Consensus 100 Ga~DmKgg~aa~l~a~~~l~~~~~~~~~~~~i~~~~~~dEE~~------~~~~G~~~~~~~ 154 (373)
T TIGR01900 100 GATDMKAGDAVMLHLAATLDGRAPETELKHDLTLIAYDCEEVA------AEKNGLGHIRDA 154 (373)
T ss_pred CchhhhHHHHHHHHHHHHHhhhccccCCCCCEEEEEEeccccc------CCCCCHHHHHHh
Confidence 8899999999999999999542110245678999999999920 123588888764
No 69
>PRK06915 acetylornithine deacetylase; Validated
Probab=92.87 E-value=0.24 Score=43.16 Aligned_cols=50 Identities=16% Similarity=-0.010 Sum_probs=39.0
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHH
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLA 65 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a 65 (162)
.|+.|.=+|+|++|..++.|.... .+++.+|.|+|..+|| .+..|+..+.
T Consensus 130 rG~~D~Kgg~aa~l~a~~~l~~~~--~~~~~~v~~~~~~dEE--------~g~~G~~~~~ 179 (422)
T PRK06915 130 RGTTDMKGGNVALLLAMEALIESG--IELKGDVIFQSVIEEE--------SGGAGTLAAI 179 (422)
T ss_pred cCcccchHHHHHHHHHHHHHHHcC--CCCCCcEEEEEecccc--------cCCcchHHHH
Confidence 488899999999999999997631 2456789999999999 4445776654
No 70
>PRK05469 peptidase T; Provisional
Probab=92.77 E-value=0.22 Score=43.32 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=37.5
Q ss_pred CCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHH
Q psy571 9 TDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLA 65 (162)
Q Consensus 9 ~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a 65 (162)
.|.=+|+|++|..++.|.... ..++.+|.|+|-.+|| .+ .|++++.
T Consensus 139 ~D~Kgglaa~l~a~~~l~~~~--~~~~g~v~~~f~~dEE--------~g-~Ga~~~~ 184 (408)
T PRK05469 139 ADDKAGIAEIMTALEYLIAHP--EIKHGDIRVAFTPDEE--------IG-RGADKFD 184 (408)
T ss_pred ccchHHHHHHHHHHHHHHhCC--CCCCCCEEEEEecccc--------cC-CCHHHhh
Confidence 889999999999999997631 2345689999999999 55 6888875
No 71
>PRK06837 acetylornithine deacetylase; Provisional
Probab=92.05 E-value=0.35 Score=42.43 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=32.9
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCc
Q psy571 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEE 47 (162)
Q Consensus 7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE 47 (162)
|+.|+-.|+|++|..++.|.... .+++.+|.|+|...||
T Consensus 135 G~~D~Kgg~~a~l~a~~~l~~~~--~~~~~~i~~~~~~dEE 173 (427)
T PRK06837 135 GAADMKAGLAAMLFALDALRAAG--LAPAARVHFQSVIEEE 173 (427)
T ss_pred CcccchHHHHHHHHHHHHHHHcC--CCCCCcEEEEEEeccc
Confidence 89999999999999999987631 2467789999998899
No 72
>KOG2657|consensus
Probab=92.01 E-value=0.46 Score=43.71 Aligned_cols=106 Identities=20% Similarity=0.290 Sum_probs=69.0
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCccccccc
Q psy571 5 FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLD 84 (162)
Q Consensus 5 f~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~ 84 (162)
-+||.---+|.-.+|-.|++|+..-.-....++|.|+||.||= -+-+||+.++-.++..+.| ..++
T Consensus 196 s~Ga~S~~~slv~~laaa~al~r~pai~nl~rnV~f~~f~get--------~~ylgS~r~~yeme~gk~p------va~~ 261 (596)
T KOG2657|consen 196 SVGAVSVLTSLVSVLAAARALKRQPAINNLNRNVFFAFFNGET--------LDYLGSGRAAYEMENGKFP------VAIR 261 (596)
T ss_pred cCCccccchhHHHHHHHHHHhccCcccccccceeEEEEeecce--------eeeccchhhhhHhhcCCCC------eeec
Confidence 3466544557778888999996520003468999999999998 5668999999887666544 3455
Q ss_pred c---eeeEEEeccCCCC-CCcccccC------CCchHHHHHHHHHHHHHH
Q psy571 85 R---MDMLVLLDLLGTS-NPRFYSYY------PPTHKWYKQLVGIESRLT 124 (162)
Q Consensus 85 ~---i~~~i~lDmvG~~-~~~~~~~~------~~t~~~~~~l~~ie~~l~ 124 (162)
+ |+.++-+-.||.. +..+..+. ..+.+..++|..+|+-++
T Consensus 262 s~~~iD~~LEiGqvg~~~s~kl~~~~d~~~~~sv~nqtld~L~~~ekSlr 311 (596)
T KOG2657|consen 262 SDNEIDYILEIGQVGVAKSRKLYVHVDGERYQSVKNQTLDVLDRIEKSLR 311 (596)
T ss_pred cCccchheeeecccccccCceEEEEeccchhhhHHHHHHHHHHHHHhccc
Confidence 5 8888888888864 22222221 134444555556655554
No 73
>KOG2275|consensus
Probab=91.28 E-value=0.52 Score=42.11 Aligned_cols=52 Identities=21% Similarity=0.245 Sum_probs=44.7
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 67 (162)
Q Consensus 7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~ 67 (162)
||.|-=+-++.+||..|.|...- .++.++|-+.|--+||. +|..|.+-||+.
T Consensus 126 GaqD~K~~~va~leAir~L~~~g--~kp~Rti~lsfvpDEEi-------~G~~Gm~~fa~~ 177 (420)
T KOG2275|consen 126 GAQDMKCVGVAYLEAIRNLKASG--FKPKRTIHLSFVPDEEI-------GGHIGMKEFAKT 177 (420)
T ss_pred cccchHhHHHHHHHHHHHHHhcC--CCcCceEEEEecCchhc-------cCcchHHHHhhh
Confidence 89999898899999999998732 46899999999999994 568899999973
No 74
>PRK02256 putative aminopeptidase 1; Provisional
Probab=90.00 E-value=0.7 Score=41.85 Aligned_cols=35 Identities=20% Similarity=0.090 Sum_probs=29.7
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCc
Q psy571 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEE 47 (162)
Q Consensus 7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE 47 (162)
++-||=+||.++||..+.+. .++..+.+++||-||
T Consensus 257 ~rLDNr~~~~~~leal~~~~------~~~~~~~~~~~dqEE 291 (462)
T PRK02256 257 YGQDDRVCAYTSLEALLELE------NPEKTAVVLLVDKEE 291 (462)
T ss_pred cccccHHHHHHHHHHHHhcc------cCCCeEEEEEEcccc
Confidence 67899999999999987653 245688999999999
No 75
>PLN02280 IAA-amino acid hydrolase
Probab=89.15 E-value=0.88 Score=41.13 Aligned_cols=43 Identities=26% Similarity=0.294 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571 14 PCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 67 (162)
Q Consensus 14 g~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~ 67 (162)
++|++|.+|+.|.... .+.+.+|.|+|-.+|| .+ .|++++++.
T Consensus 190 ~~A~~l~a~~~L~~~~--~~~~g~V~~if~pdEE--------~g-~Ga~~li~~ 232 (478)
T PLN02280 190 HVAMLLGAAKILKSRE--HLLKGTVVLLFQPAEE--------AG-NGAKRMIGD 232 (478)
T ss_pred HHHHHHHHHHHHHhcc--ccCCceEEEEeccccc--------cc-chHHHHHHC
Confidence 9999999999997631 2356789999999999 44 499988753
No 76
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=88.24 E-value=0.78 Score=39.81 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=32.5
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCc
Q psy571 8 ATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEE 47 (162)
Q Consensus 8 A~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE 47 (162)
|-|+=+|||++|++++.|...- .+++.+|.|+|...||
T Consensus 181 ~~D~K~G~a~~l~~~~~l~~~~--~~~~~~v~~~~t~qEE 218 (343)
T TIGR03106 181 HLDDKAGVAALLAALKAIVEHK--VPLPVDVHPLFTITEE 218 (343)
T ss_pred ecccHHhHHHHHHHHHHHHhcC--CCCCceEEEEEECCcc
Confidence 5799999999999999998631 2367899999999999
No 77
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=86.60 E-value=2.6 Score=38.58 Aligned_cols=76 Identities=17% Similarity=0.216 Sum_probs=51.6
Q ss_pred CchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCc-c-cccccceee
Q psy571 11 SAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGK-T-LTKLDRMDM 88 (162)
Q Consensus 11 nAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~-~-~~~l~~i~~ 88 (162)
|..|+|.+|-+||.+++. .=-.+.|.|++-|.| ..|.+.+.+.......+.... + ..+-..|++
T Consensus 35 n~~~v~l~lal~~~~~~~---~~wsKDii~l~~~~~-----------~~g~~awl~~Yh~~~~~~~~~~~l~~~~G~i~a 100 (504)
T PF04114_consen 35 NAGGVALALALARYFRRQ---SYWSKDIIFLFTDDE-----------LAGMQAWLEAYHDSNTKGLSSSPLPLRAGSIQA 100 (504)
T ss_pred chhhHHHHHHHHHHhhhc---hhhhccEEEEecCCc-----------chHHHHHHHHHhCCCCccccccCCCCCCcceeE
Confidence 588999999999999874 223567999987644 368888887665432211100 0 123457999
Q ss_pred EEEeccCCCCCC
Q psy571 89 LVLLDLLGTSNP 100 (162)
Q Consensus 89 ~i~lDmvG~~~~ 100 (162)
.|++|.-+....
T Consensus 101 Al~le~~~~~~~ 112 (504)
T PF04114_consen 101 ALVLEYPSDSFS 112 (504)
T ss_pred EEEEEecCCCcc
Confidence 999999886544
No 78
>PRK08737 acetylornithine deacetylase; Provisional
Probab=82.92 E-value=2.4 Score=36.60 Aligned_cols=45 Identities=22% Similarity=0.185 Sum_probs=35.4
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCc-cchHHHHHH
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSI-WGARHLAAK 67 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l-~GS~~~a~~ 67 (162)
.||.|-=+|+|++|..++.+ ...|.|+|...|| .+. .|++++.+.
T Consensus 98 rGa~DmKg~~aa~l~a~~~~---------~~~v~~~~~~dEE--------~g~~~g~~~~~~~ 143 (364)
T PRK08737 98 LGVCDIKGAAAALLAAANAG---------DGDAAFLFSSDEE--------ANDPRCVAAFLAR 143 (364)
T ss_pred ECcccchHHHHHHHHHHHcc---------CCCEEEEEEcccc--------cCchhhHHHHHHh
Confidence 38999878999999887631 2469999999999 444 788888754
No 79
>PLN02693 IAA-amino acid hydrolase
Probab=82.01 E-value=3.5 Score=36.70 Aligned_cols=48 Identities=27% Similarity=0.276 Sum_probs=35.6
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHH
Q psy571 8 ATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAA 66 (162)
Q Consensus 8 A~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~ 66 (162)
|.|-=+++|++|.+|+.|.... ...+.+|.|+|-.+|| .+ -|++.+++
T Consensus 134 acGhkg~~A~~l~Aa~~L~~~~--~~~~g~V~~if~pdEE--------~~-~Ga~~~i~ 181 (437)
T PLN02693 134 ACGHDGHVAMLLGAAKILQEHR--HHLQGTVVLIFQPAEE--------GL-SGAKKMRE 181 (437)
T ss_pred CCcchHHHHHHHHHHHHHHhCc--ccCCceEEEEEEEccc--------ch-hhHHHHHH
Confidence 4444458999999999998631 2345689999999999 22 48887764
No 80
>PRK02813 putative aminopeptidase 2; Provisional
Probab=79.03 E-value=5.2 Score=35.87 Aligned_cols=34 Identities=26% Similarity=0.217 Sum_probs=29.1
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCc
Q psy571 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEE 47 (162)
Q Consensus 7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE 47 (162)
++-||=++|.++|+..+.+. + +..+.+++||-||
T Consensus 231 ~~lDnr~~~~~~l~al~~~~------~-~~~~~~~~~d~EE 264 (428)
T PRK02813 231 GRLDNLSSCHAGLEALLAAA------S-DATNVLAAFDHEE 264 (428)
T ss_pred ecchhHHHHHHHHHHHHhcC------C-CCeEEEEEEecCc
Confidence 67899999999999987652 2 5689999999999
No 81
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=78.07 E-value=3.2 Score=35.76 Aligned_cols=40 Identities=23% Similarity=0.207 Sum_probs=31.5
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCc
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEE 47 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE 47 (162)
.|+.|.=.|+|++|..++.|...- ..++..|.|++-..||
T Consensus 104 rG~~D~Kg~~aa~l~A~~~l~~~g--~~~~~~i~~~~~~dEE 143 (395)
T TIGR03320 104 RGASDQEGGIASMVYAGKIIKDLG--LLDDYTLLVTGTVQEE 143 (395)
T ss_pred cCccCccchHHHHHHHHHHHHHcC--CCCCceEEEEeccccc
Confidence 589999999999999999997631 2355677777777788
No 82
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=76.58 E-value=8.1 Score=33.41 Aligned_cols=53 Identities=21% Similarity=0.135 Sum_probs=41.4
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHH
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW 68 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~ 68 (162)
.|+.|.=.+++++|..++.+...- ..++.+|.|++-..|| .+--|.+++....
T Consensus 112 RG~~D~KG~~~a~l~A~~~l~~~~--~~~~~~v~~~~~~dEE--------~g~~~~~~~~~~~ 164 (409)
T COG0624 112 RGAADMKGGLAAALYALSALKAAG--GELPGDVRLLFTADEE--------SGGAGGKAYLEEG 164 (409)
T ss_pred cCccccchHHHHHHHHHHHHHHhC--CCCCeEEEEEEEeccc--------cCCcchHHHHHhc
Confidence 489999999999999999998731 3567899999999999 3335666666553
No 83
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=76.45 E-value=3.6 Score=37.31 Aligned_cols=39 Identities=15% Similarity=0.116 Sum_probs=27.2
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEE-ecCCc
Q psy571 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIF-FDGEE 47 (162)
Q Consensus 7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvf-fdgEE 47 (162)
++-||=++|.++|+..+.+.... +..+..+.+++ ||-||
T Consensus 248 ~rlDnr~~~~~~l~al~~~~~~~--~~~~~~~~v~~~~d~EE 287 (465)
T PTZ00371 248 PRLDNLGSSFCAFKALTEAVESL--GENSSNIRMVCLFDHEE 287 (465)
T ss_pred ecchhHHHHHHHHHHHHhccccc--cCCCCceEEEEEECCcC
Confidence 67899999999999988765310 01233455555 99999
No 84
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=75.37 E-value=7.4 Score=34.56 Aligned_cols=31 Identities=32% Similarity=0.233 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCcceEEEEecCCc
Q psy571 15 CAMLLYIARLMRQELSQLNQNLGLDLIFFDGEE 47 (162)
Q Consensus 15 ~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE 47 (162)
+|++|-.|+.|++.. .+.+-+|+|+|=.+||
T Consensus 108 ta~lLgaA~~L~~~~--~~~~Gtv~~ifQPAEE 138 (392)
T COG1473 108 TAILLGAALALAEHK--DNLPGTVRLIFQPAEE 138 (392)
T ss_pred HHHHHHHHHHHHhhh--hhCCcEEEEEeccccc
Confidence 689999999998753 3678899999999999
No 85
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=72.71 E-value=5.9 Score=34.20 Aligned_cols=40 Identities=23% Similarity=0.207 Sum_probs=31.0
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCc
Q psy571 6 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEE 47 (162)
Q Consensus 6 ~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE 47 (162)
.|+.|.=.|+|++|..++.|...- ..++..|.|++...||
T Consensus 104 rG~~D~Kg~~aa~l~a~~~l~~~~--~~~~~~v~~~~~~dEE 143 (395)
T TIGR03526 104 RGASDQEGGIASMVYAGKIIKDLG--LLDDYTLLVTGTVQEE 143 (395)
T ss_pred cCccccchhHHHHHHHHHHHHHcC--CCCCceEEEEEecccc
Confidence 589999999999999999997631 1345677777777788
No 86
>KOG2276|consensus
Probab=63.49 E-value=16 Score=33.17 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=35.1
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCc
Q psy571 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEE 47 (162)
Q Consensus 7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE 47 (162)
|++|+=-+++.-++.-+++.+.- ...+.+|.|+|=.-||
T Consensus 129 G~TDdkGPv~~wi~av~a~~~~g--~~lpvnv~f~~EgmEE 167 (473)
T KOG2276|consen 129 GATDDKGPVLSWIHAVKALQQLG--IDLPVNVVFVFEGMEE 167 (473)
T ss_pred CcCCCCccchHHHHHHHHHHHhC--ccccceEEEEEEechh
Confidence 99999999999999999998852 3568999999999999
No 87
>KOG1481|consensus
Probab=59.96 E-value=15 Score=31.93 Aligned_cols=46 Identities=30% Similarity=0.553 Sum_probs=35.6
Q ss_pred CccCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhc
Q psy571 4 PFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERS 71 (162)
Q Consensus 4 ~f~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~ 71 (162)
-|+|.. +|.-|.+-.++|+.|. |.++|..|.- |+ ||||+-+.|.+.
T Consensus 325 LFvGsS-sa~N~VaAv~vAk~Lg-------pG~~iVtilC------------Ds--G~rh~sk~~~~~ 370 (391)
T KOG1481|consen 325 LFVGSS-SALNCVAAVRVAKTLG-------PGHTIVTILC------------DS--GSRHLSKLFSES 370 (391)
T ss_pred eEecch-hhHHHHHHHHHHHhcC-------CCceEEEEEe------------CC--cchHHHHhcCHH
Confidence 367765 7888888888888884 4678888877 44 999999888765
No 88
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=54.71 E-value=14 Score=33.15 Aligned_cols=54 Identities=20% Similarity=0.187 Sum_probs=36.2
Q ss_pred CCCccCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHH
Q psy571 2 ASPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLA 65 (162)
Q Consensus 2 ~~~f~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a 65 (162)
|..-+||+|- +|.|.++..-..+..... +-+..+|++.|-.+|| .++.|+.++-
T Consensus 137 Ga~LLgaD~k-AGia~i~~al~~~~~~~~-~i~h~~i~~g~s~~Ee--------~g~rg~~~~~ 190 (414)
T COG2195 137 GATLLGADDK-AGIAEIMTALSVLREKHP-EIPHGGIRGGFSPDEE--------IGGRGAANKD 190 (414)
T ss_pred CccccCCcch-hHHHHHHHHHHHHhhcCc-cccccCeEEEecchHH--------hhhhhhhhcc
Confidence 4556788877 556666666666664210 1246789999999999 6777887664
No 89
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=37.47 E-value=1e+02 Score=28.43 Aligned_cols=74 Identities=18% Similarity=0.107 Sum_probs=46.3
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcccccccce
Q psy571 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRM 86 (162)
Q Consensus 7 GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~i 86 (162)
||.|==||.|+=|-.-..+... ...+-+|.|+...-|| ..--|.+..+..+..-. . ...| .+
T Consensus 137 Ga~DMKsGlav~la~L~~fa~~---~~~~GNlLf~a~pdEE--------~~s~G~r~a~~~L~~L~--k----k~~l-~~ 198 (553)
T COG4187 137 GALDMKSGLAVHLACLEEFAAR---TDRQGNLLFMAVPDEE--------VESRGMREARPALPGLK--K----KFDL-EY 198 (553)
T ss_pred CchhhhhhhHHHHHHHHHHhhC---CCCCCcEEEEeccchh--------hhcccHHHHHHHHHHHH--H----hhCc-eE
Confidence 7788777777655444434331 3346789999999999 44457776664332210 0 0122 57
Q ss_pred eeEEEeccCCCC
Q psy571 87 DMLVLLDLLGTS 98 (162)
Q Consensus 87 ~~~i~lDmvG~~ 98 (162)
.+.||+|-++..
T Consensus 199 ~~~IN~D~~~~~ 210 (553)
T COG4187 199 TAAINLDVTSDQ 210 (553)
T ss_pred EEEeccccccCC
Confidence 899999999863
No 90
>PF14330 DUF4387: Domain of unknown function (DUF4387)
Probab=36.80 E-value=38 Score=24.54 Aligned_cols=64 Identities=19% Similarity=0.313 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhcc--CCCcceEEEEecCCccccccCCCCCccchHHHHHHHHhcccccCCcccccccceeeEEEeccC
Q psy571 18 LLYIARLMRQELSQL--NQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLL 95 (162)
Q Consensus 18 lLeiAr~l~~~~~~~--~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~~~~~~~~~~~~~~~~l~~i~~~i~lDmv 95 (162)
|.++|+.+... + +-..++. |+|+.+|.+..--+ .+.+-...+|+.+. .+.++|..++-+|-.
T Consensus 1 L~dla~vIRSK---NAGPf~lT~D-I~F~~~e~Y~~vk~-s~~l~~~~ia~Ly~-----------i~~~~I~~~~~~dpa 64 (99)
T PF14330_consen 1 LSDLAKVIRSK---NAGPFELTFD-IIFKDKEAYERVKA-SGVLTPELIARLYG-----------IDPEDIIKFFFFDPA 64 (99)
T ss_pred CHHHHHHHhcc---CCCCcEEEEE-EEECCHHHHHHHHH-cCccCHHHHHHHHC-----------CCHHHEEEEEEeCcc
Confidence 46899999862 2 2244444 56677775543322 34566777776543 345667667777765
Q ss_pred CC
Q psy571 96 GT 97 (162)
Q Consensus 96 G~ 97 (162)
-+
T Consensus 65 ~a 66 (99)
T PF14330_consen 65 NA 66 (99)
T ss_pred ce
Confidence 54
No 91
>PF13809 Tubulin_2: Tubulin like
Probab=32.02 E-value=86 Score=26.94 Aligned_cols=38 Identities=21% Similarity=0.375 Sum_probs=30.1
Q ss_pred CchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCcc
Q psy571 11 SAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEA 48 (162)
Q Consensus 11 nAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE~ 48 (162)
+++|+.++.++.|.|...+.+.+.+-.|+|+.+|-.+.
T Consensus 6 GGTG~~~l~~l~~~l~~~~~~~~~~~~v~Fl~iDt~~~ 43 (345)
T PF13809_consen 6 GGTGGKILARLRRRLREELGGLELPPCVQFLYIDTDEN 43 (345)
T ss_pred CchHHHHHHHHHHHHHHHhcCcCCCCcEEEEEEEcCcc
Confidence 47899999999999988553224455699999998885
No 92
>PF15560 Imm8: Immunity protein 8
Probab=28.53 E-value=1.4e+02 Score=22.73 Aligned_cols=59 Identities=22% Similarity=0.311 Sum_probs=40.5
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHhhc-------cCCCcceEEEEecCCccccccCCCCCccchHHHHHH
Q psy571 5 FIGATDSAVPCAMLLYIARLMRQELSQ-------LNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 67 (162)
Q Consensus 5 f~GA~DnAsg~A~lLeiAr~l~~~~~~-------~~~~~~i~fvffdgEE~~~~w~~~~~l~GS~~~a~~ 67 (162)
.+|++|+|. -.++-++|.+...+++ +..+.-=..++|+|.= .++.+..|+|-+|+|-++
T Consensus 8 ViGG~~~~~--~~~~~~ir~mRk~lKk~F~~~~~e~l~k~kI~l~~sGdv--S~Y~~~sGIyq~rY~~kk 73 (133)
T PF15560_consen 8 VIGGQIDAE--KNLHSLIREMRKSLKKQFESIEFEGLDKIKINLYFSGDV--SSYCDKSGIYQCRYFSKK 73 (133)
T ss_pred EEcCcchHH--HHHHHHHHHHHHHHHHHHHhhhHhhhhhEeEEEEEcCch--hhhcCCCCcchhHHHHhh
Confidence 579999988 6677777777766543 1334444678999875 235566789999988644
No 93
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=28.18 E-value=1.1e+02 Score=21.96 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=27.6
Q ss_pred CCccCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCC
Q psy571 3 SPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGE 46 (162)
Q Consensus 3 ~~f~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgE 46 (162)
-|+.|.+|. .++|-||...++.. ++.=|++|.||.-
T Consensus 51 lP~f~~~d~---~~Vl~ei~~C~~~~-----p~~YVRliG~D~~ 86 (99)
T cd03527 51 LPMFGCTDP---AQVLREIEACRKAY-----PDHYVRVVGFDNY 86 (99)
T ss_pred CCCCCCCCH---HHHHHHHHHHHHHC-----CCCeEEEEEEeCC
Confidence 456677665 78899999888873 6677999999754
No 94
>CHL00130 rbcS ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit; Reviewed
Probab=25.78 E-value=1.2e+02 Score=23.34 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=27.7
Q ss_pred CccCCCCCchHHHHHHHHHHHHHHHhhccCCCcceEEEEecCCc
Q psy571 4 PFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEE 47 (162)
Q Consensus 4 ~f~GA~DnAsg~A~lLeiAr~l~~~~~~~~~~~~i~fvffdgEE 47 (162)
|+.|.+|. .++|.||...=+. -|+.=|+++.||.--
T Consensus 54 PMFg~tD~---~~Vl~Ei~~Crka-----yP~~yIRl~gFDn~r 89 (138)
T CHL00130 54 PLFDVKDP---AAVMFEINECRKQ-----KPNGYIKVNAFDASR 89 (138)
T ss_pred ccCCCCCH---HHHHHHHHHHHHH-----CCCcEEEEEEeeCCC
Confidence 67788886 6788888766554 478889999997655
No 95
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=25.21 E-value=74 Score=24.61 Aligned_cols=35 Identities=31% Similarity=0.386 Sum_probs=23.9
Q ss_pred EeccCCCCCCcccccCCCchHHHHHHHHHHHHHHHhhhhcccc
Q psy571 91 LLDLLGTSNPRFYSYYPPTHKWYKQLVGIESRLTAQGLLNMVN 133 (162)
Q Consensus 91 ~lDmvG~~~~~~~~~~~~t~~~~~~l~~ie~~l~~~~~l~~~~ 133 (162)
||.|+|.+.|.++.. .|. .+|+..+.+.+.-.+..
T Consensus 10 NLN~LG~REp~iYG~--~Tl------~di~~~~~~~a~~~g~~ 44 (146)
T COG0757 10 NLNLLGKREPGIYGS--TTL------EDIEADLEEEAAKLGVE 44 (146)
T ss_pred CccccCCCCCCccCc--ccH------HHHHHHHHHHHHHcCce
Confidence 789999999987653 333 47777776665544553
No 96
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=24.31 E-value=67 Score=24.88 Aligned_cols=42 Identities=36% Similarity=0.535 Sum_probs=27.9
Q ss_pred EeccCCCCCCcccccCCCchHHHHHHHHHHHHHHHhhhhccccCCCcccccccccc
Q psy571 91 LLDLLGTSNPRFYSYYPPTHKWYKQLVGIESRLTAQGLLNMVNSNRSKKLTYFREM 146 (162)
Q Consensus 91 ~lDmvG~~~~~~~~~~~~t~~~~~~l~~ie~~l~~~~~l~~~~~~~~~~~~~F~~~ 146 (162)
||.|+|.++|.++. ..| |.+|++.+++.+.-.+.. ..+||..
T Consensus 11 NLN~LG~Rep~iYG--~~t------l~~i~~~~~~~a~~~g~~------v~~~QSN 52 (146)
T PRK05395 11 NLNLLGTREPEIYG--STT------LADIEALLEEEAAELGVE------LEFFQSN 52 (146)
T ss_pred CccccCCCCCCcCC--CCC------HHHHHHHHHHHHHHcCCE------EEEEeeC
Confidence 79999999997664 333 347888887765544443 3567654
No 97
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=24.23 E-value=84 Score=24.19 Aligned_cols=42 Identities=26% Similarity=0.381 Sum_probs=28.1
Q ss_pred EeccCCCCCCcccccCCCchHHHHHHHHHHHHHHHhhhhccccCCCcccccccccc
Q psy571 91 LLDLLGTSNPRFYSYYPPTHKWYKQLVGIESRLTAQGLLNMVNSNRSKKLTYFREM 146 (162)
Q Consensus 91 ~lDmvG~~~~~~~~~~~~t~~~~~~l~~ie~~l~~~~~l~~~~~~~~~~~~~F~~~ 146 (162)
||.|+|.++|.++. ..| |.+|++++++.+.-.+.. ..+||..
T Consensus 9 NLNlLG~REp~iYG--~~t------l~di~~~~~~~a~~~g~~------v~~~QSN 50 (141)
T TIGR01088 9 NLNMLGLREPGVYG--SQT------LEEIVEIIETFAAQLNVE------LEFFQSN 50 (141)
T ss_pred CccccCCCCCCcCC--CCC------HHHHHHHHHHHHHHcCCE------EEEEeeC
Confidence 79999999997664 333 347888887776544443 3567654
No 98
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=21.41 E-value=88 Score=20.68 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhccCCCcceEEEEecCC
Q psy571 18 LLYIARLMRQELSQLNQNLGLDLIFFDGE 46 (162)
Q Consensus 18 lLeiAr~l~~~~~~~~~~~~i~fvffdgE 46 (162)
-||+|..|++ .+|+||-..-+
T Consensus 12 ~lE~A~~La~--------~GIRFVpiPv~ 32 (61)
T PF07131_consen 12 ALEMAHSLAH--------IGIRFVPIPVV 32 (61)
T ss_pred HHHHHHHHHH--------cCceeeccccc
Confidence 4788888876 68999976443
Done!