RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy571
(162 letters)
>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein,
metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP:
c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A*
2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A
2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ...
Length = 329
Score = 128 bits (322), Expect = 8e-37
Identities = 73/165 (44%), Positives = 103/165 (62%), Gaps = 10/165 (6%)
Query: 4 PFIGATDSAVPCAMLLYIARLMRQELSQLNQ------NLGLDLIFFDGEEAFNEWSAEDS 57
F+GATDSAVPCAM+L +AR + ++L L +L L LIFFDGEEAF WS +DS
Sbjct: 121 VFVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDS 180
Query: 58 IWGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLV 117
++G+RHLAAK + + ++L MD+LVLLDL+G NP F +++P + +W+++L
Sbjct: 181 LYGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPNPTFPNFFPNSARWFERLQ 240
Query: 118 GIESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
IE L GLL + S + YF+ S V +DDH+PF R
Sbjct: 241 AIEHELHELGLL----KDHSLEGRYFQNYSYGGVIQDDHIPFLRR 281
>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta
protein, alpha/beta-mixed fold, glutaminyl cyclas
membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X*
3pb8_X* 3pb9_X*
Length = 330
Score = 116 bits (292), Expect = 2e-32
Identities = 68/162 (41%), Positives = 98/162 (60%), Gaps = 10/162 (6%)
Query: 4 PFIGATDSAVPCAMLLYIARLMRQELSQLNQN---LGLDLIFFDGEEAFNEWSAEDSIWG 60
PF+GATDSAVPCA+LL +A+ + ELS+ + + L L+F DGEEA EW +DS++G
Sbjct: 128 PFVGATDSAVPCALLLELAQALDLELSRAKKQAAPVTLQLLFLDGEEALKEWGPKDSLYG 187
Query: 61 ARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIE 120
+RHLA E T++ +++ +LLDLLG NP FYS++P T +W+ +L IE
Sbjct: 188 SRHLAQLMES---IPHSPGPTRIQAIELFMLLDLLGAPNPTFYSHFPRTVRWFHRLRSIE 244
Query: 121 SRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
RL LL + +++ YF+ F EDDH+PF R
Sbjct: 245 KRLHRLNLL----QSHPQEVMYFQPGEPFGSVEDDHIPFLRR 282
>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural
genomics, joint CEN structural genomics, JCSG; 1.06A
{Parabacteroides distasonis}
Length = 309
Score = 89.0 bits (220), Expect = 4e-22
Identities = 30/159 (18%), Positives = 49/159 (30%), Gaps = 22/159 (13%)
Query: 4 PFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARH 63
P GA D LL IAR + Q+ +G+D+IFFD E+ D +
Sbjct: 121 PLDGADDGGSGVGALLEIARQIGQK----APGIGIDIIFFDAEDYGTPEFVTDYTPDSWC 176
Query: 64 LAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESRL 123
L ++ + + +LLD++G N F+ + + S
Sbjct: 177 LGTQFWAKNPH------VPNYTAEYGILLDMVGGKNATFFKEQQSLRAAAPIVEMVWSAA 230
Query: 124 TAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
R + + DDH
Sbjct: 231 ------------RDLGYGKYFINAAGGAITDDHQYVISG 257
>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase,
phosphorylase/hydrolase-like fold, structura genomics;
1.80A {Bacteroides vulgatus atcc 8482}
Length = 314
Score = 87.5 bits (216), Expect = 1e-21
Identities = 29/158 (18%), Positives = 50/158 (31%), Gaps = 23/158 (14%)
Query: 4 PFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEE-AFNEWSAEDSIWGAR 62
P +G D A +LL IAR + + LG+D++FFD E+ E+
Sbjct: 123 PILGVNDGASGVGVLLEIARQ----IQKEQPALGIDIVFFDSEDYGIPEFYDGKYKQDTW 178
Query: 63 HLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESR 122
L +++ + +LLD++G + FY ++ I +
Sbjct: 179 CLGSQYWARTPH------VQNYNARYGILLDMVGGKDATFYYEGYSARTARSEMKKIWKK 232
Query: 123 LTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFY 160
G DDH+
Sbjct: 233 AHELGYGKYFVKEDG------------GETVDDHIYVN 258
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A
{Aneurinibacillus SP} PDB: 2ek9_A*
Length = 421
Score = 30.4 bits (68), Expect = 0.23
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 22/100 (22%)
Query: 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAA 66
GA D A A+ L +AR+ +S+L + L I F E E+ + G++ AA
Sbjct: 237 GANDDASGVAVTLELARV----MSKLKTDTELRFITFGAE--------ENGLIGSKKYAA 284
Query: 67 KWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYY 106
+ ++ R + LD++G+ + Y
Sbjct: 285 SL----------SEDEIKRTIGMFQLDMVGSKDAGDLIMY 314
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.25
Identities = 25/144 (17%), Positives = 40/144 (27%), Gaps = 47/144 (32%)
Query: 56 DSIWGARHLAA---------------------KWERSH--LQHRGKTLTKLDRMDMLVLL 92
++ A+ A +H L H TLT + +L L
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--L 308
Query: 93 DLLGTS-----------NPR-------FYSYYPPTHKWYKQLVGIESRLTAQGLLNMVNS 134
L NPR T +K + + + LN++
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 135 NRSKKLTYFREMSTFPVAEDDHLP 158
+K F +S FP H+P
Sbjct: 369 AEYRK--MFDRLSVFP--PSAHIP 388
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus,
cell MEMB disulfide bond, endocytosis, HOST-virus inter
receptor, secreted, transmembrane; HET: NAG FUC BMA MAN;
2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A*
3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Length = 640
Score = 27.8 bits (61), Expect = 1.7
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 6/66 (9%)
Query: 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIF--FDGEEAF----NEWSAEDSIWG 60
GA S V A+LL +A++ + + +IF + + EW
Sbjct: 295 GAAKSGVGTALLLKLAQMFSDMVLKDGFQPSRSIIFASWSAGDFGSVGATEWLEGYLSSL 354
Query: 61 ARHLAA 66
Sbjct: 355 HLKAFT 360
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Length = 444
Score = 27.9 bits (61), Expect = 1.8
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 6/64 (9%)
Query: 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAA 66
GA D A++ A+ + + + + ++ + E E A+ A
Sbjct: 266 GAIDDGAGVAIVTAAAKHILDLPQKPER--TIRVVLYAAE----ELGLLGGKTYAKEHEA 319
Query: 67 KWER 70
+ E+
Sbjct: 320 ELEK 323
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 1.9
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 17/42 (40%)
Query: 26 RQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 67
+Q L +L +L L A+DS A LA K
Sbjct: 19 KQALKKLQASLKL--------------YADDS---APALAIK 43
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene,
phosphoprotein, GMP synthetase, guanine monophosphate
synthetase, chromosomal rearrangement; HET: XMP; 2.5A
{Homo sapiens}
Length = 697
Score = 27.2 bits (61), Expect = 2.6
Identities = 17/84 (20%), Positives = 25/84 (29%), Gaps = 18/84 (21%)
Query: 7 GATDSAVPCAMLLYIAR-------------LMR----QELSQLNQNLGLDLIFFDGEEAF 49
G DS V C LL A MR Q + + + LG+ + + +F
Sbjct: 249 GGVDSTV-CTALLNRALNQEQVIAVHIDNGFMRKRESQSVEEALKKLGIQVKVINAAHSF 307
Query: 50 NEWSAEDSIWGARHLAAKWERSHL 73
+ I K L
Sbjct: 308 YNGTTTLPISDEDRTPRKRISKTL 331
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue
transglutaminase,acyltransferase; 2.50A {Pagrus major}
SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Length = 695
Score = 26.9 bits (59), Expect = 4.0
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 33 NQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW-ERSHL 73
+ NL +D + + E+ + DS W W R L
Sbjct: 303 DGNLSVDFLLNERLESLDSRQRSDSSWNFHCWVESWMSREDL 344
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 26.8 bits (59), Expect = 4.3
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 9/27 (33%)
Query: 36 LGLDLIFFDGEEAFNEWSAEDSIWGAR 62
L L+ +F N W +E W +
Sbjct: 645 LSLETLF-------NRWHSES--WANQ 662
>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution,
hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4
PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A
1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A
3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ...
Length = 299
Score = 25.9 bits (57), Expect = 7.3
Identities = 25/154 (16%), Positives = 48/154 (31%), Gaps = 33/154 (21%)
Query: 7 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAA 66
GA D A A + + R++ + Q ++ + + + EE + G++ LA
Sbjct: 114 GADDDASGIAAVTEVIRVLSENNFQPKRS--IAFMAYAAEEV--------GLRGSQDLAN 163
Query: 67 KWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESRLTAQ 126
+++ L LD+ Y + + + Q
Sbjct: 164 QYKSEGKNVVS----------ALQ-LDMTN---------YKGSAQDVVFITDYTDSNFTQ 203
Query: 127 GLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFY 160
L + LTY T A DH ++
Sbjct: 204 -YLTQLMDEYLPSLTY--GFDTCGYACSDHASWH 234
>3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA
polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A
{Drosophila melanogaster} PDB: 3fdf_A 3fmv_A 3omx_A
3omw_A
Length = 198
Score = 25.1 bits (55), Expect = 9.8
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 100 PRFYSYYPPTHKWYKQLVGIESRL-TAQGLLNMVNSNRSKK 139
P Y + Y+ L + T GLL+M++ NR K
Sbjct: 56 PNVYEFGTKYEDIYRDLESKDKEFYTQNGLLHMLDRNRRIK 96
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.419
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,495,252
Number of extensions: 134991
Number of successful extensions: 282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 21
Length of query: 162
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 76
Effective length of database: 4,300,587
Effective search space: 326844612
Effective search space used: 326844612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)