RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy571
         (162 letters)



>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase,
           QPCT {Human (Homo sapiens) [TaxId: 9606]}
          Length = 329

 Score = 96.4 bits (239), Expect = 4e-25
 Identities = 72/168 (42%), Positives = 101/168 (60%), Gaps = 10/168 (5%)

Query: 1   MASPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLG------LDLIFFDGEEAFNEWSA 54
               F+GATDSAVPCAM+L +AR + ++L  L           L LIFFDGEEAF  WS 
Sbjct: 118 NNRVFVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSP 177

Query: 55  EDSIWGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYK 114
           +DS++G+RHLAAK   +      +  ++L  MD+LVLLDL+G  NP F +++P + +W++
Sbjct: 178 QDSLYGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPNPTFPNFFPNSARWFE 237

Query: 115 QLVGIESRLTAQGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYYR 162
           +L  IE  L   GLL     + S +  YF+  S   V +DDH+PF  R
Sbjct: 238 RLQAIEHELHELGLL----KDHSLEGRYFQNYSYGGVIQDDHIPFLRR 281


>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica
           [TaxId: 671]}
          Length = 291

 Score = 32.1 bits (72), Expect = 0.024
 Identities = 12/80 (15%), Positives = 30/80 (37%), Gaps = 5/80 (6%)

Query: 3   SPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFN---EWSAEDSIW 59
           S   GA D A   A +  + R++ +   Q  ++  +  + +  EE      +  A     
Sbjct: 110 SVAPGADDDASGIAAVTEVIRVLSENNFQPKRS--IAFMAYAAEEVGLRGSQDLANQYKS 167

Query: 60  GARHLAAKWERSHLQHRGKT 79
             +++ +  +     ++G  
Sbjct: 168 EGKNVVSALQLDMTNYKGSA 187


>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor
           ectodomain, protease-like domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 294

 Score = 29.4 bits (65), Expect = 0.17
 Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 5   FIGATDSAVPCAMLLYIARLMRQELSQLNQ--NLGLDLIFFDGEEAFNEWSAEDSIWGAR 62
             GA  S V  A+LL +A++    + +     +  +    +   +  +  + E   W   
Sbjct: 99  GPGAAKSGVGTALLLKLAQMFSDMVLKDGFQPSRSIIFASWSAGDFGSVGATE---WLEG 155

Query: 63  HLAAKWER 70
           +L++   +
Sbjct: 156 YLSSLHLK 163


>d1k8ke_ a.148.1.1 (E:) Arp2/3 complex 21 kDa subunit ARPC3 {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 174

 Score = 25.5 bits (56), Expect = 2.5
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 3/34 (8%)

Query: 22  ARLMRQELSQLNQNLGLDLI--FFDGEEAF-NEW 52
             +MR  L QL Q  GL L    FD +    ++W
Sbjct: 125 DEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKW 158


>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage
           K1F [TaxId: 344021]}
          Length = 516

 Score = 26.1 bits (57), Expect = 2.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)

Query: 36  LGLDLIFFDGEEAFNEWSA 54
           +G DLI F  E A NEW A
Sbjct: 392 VGDDLIMFGSERAENEWEA 410


>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 514

 Score = 24.7 bits (54), Expect = 7.1
 Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 100 PRFYSYYPPTHKWYKQLVGIESRLTAQGLL----NMVNSNRSKK 139
           PR YS YP  +  +  +  + S ++   ++     +  +  SK+
Sbjct: 437 PRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKR 480


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0568    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 602,257
Number of extensions: 25172
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 9
Length of query: 162
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 83
Effective length of database: 1,322,926
Effective search space: 109802858
Effective search space used: 109802858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.0 bits)