Query psy5712
Match_columns 386
No_of_seqs 260 out of 2128
Neff 7.5
Searched_HMMs 46136
Date Sat Aug 17 00:43:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1321|consensus 100.0 3.2E-59 6.9E-64 434.4 22.7 268 31-314 35-364 (395)
2 COG0276 HemH Protoheme ferro-l 100.0 1.8E-56 4E-61 428.0 25.5 261 32-311 3-319 (320)
3 PLN02449 ferrochelatase 100.0 1.4E-55 3E-60 443.2 26.8 266 29-312 84-415 (485)
4 PF00762 Ferrochelatase: Ferro 100.0 7.7E-55 1.7E-59 423.4 20.6 258 34-310 1-316 (316)
5 TIGR00109 hemH ferrochelatase. 100.0 3.6E-53 7.8E-58 413.4 25.2 261 32-310 3-321 (322)
6 PRK12435 ferrochelatase; Provi 100.0 6.2E-53 1.3E-57 408.7 25.4 256 31-311 1-308 (311)
7 PRK00035 hemH ferrochelatase; 100.0 6.3E-49 1.4E-53 386.3 26.3 265 32-313 3-326 (333)
8 KOG1321|consensus 100.0 1.3E-41 2.8E-46 316.9 11.8 198 175-386 96-293 (395)
9 COG0276 HemH Protoheme ferro-l 100.0 3.1E-40 6.6E-45 316.3 20.8 181 181-385 69-250 (320)
10 PRK12435 ferrochelatase; Provi 100.0 4.9E-40 1.1E-44 318.6 22.2 206 162-385 4-239 (311)
11 PLN02449 ferrochelatase 100.0 2.9E-38 6.4E-43 318.0 22.8 187 180-385 155-345 (485)
12 PF00762 Ferrochelatase: Ferro 100.0 3.1E-37 6.8E-42 300.0 20.4 184 180-385 64-248 (316)
13 TIGR00109 hemH ferrochelatase. 100.0 1.6E-35 3.5E-40 289.2 22.6 184 181-385 70-253 (322)
14 PRK00035 hemH ferrochelatase; 100.0 3.3E-32 7.2E-37 267.7 22.7 186 180-385 69-255 (333)
15 cd00419 Ferrochelatase_C Ferro 100.0 7.2E-29 1.6E-33 212.8 14.1 132 142-277 1-133 (135)
16 cd00419 Ferrochelatase_C Ferro 99.9 3.6E-22 7.9E-27 171.3 8.8 83 300-385 1-84 (135)
17 cd03411 Ferrochelatase_N Ferro 99.9 3.8E-21 8.2E-26 169.8 15.1 151 35-295 1-159 (159)
18 PF06180 CbiK: Cobalt chelatas 99.4 1.2E-12 2.7E-17 123.9 12.2 233 35-311 1-262 (262)
19 COG4822 CbiK Cobalamin biosynt 99.3 9.3E-11 2E-15 105.3 17.5 228 33-313 1-260 (265)
20 PRK02395 hypothetical protein; 99.3 3.3E-10 7.2E-15 109.0 21.4 161 125-313 100-263 (279)
21 cd03409 Chelatase_Class_II Cla 99.1 1.2E-09 2.6E-14 88.5 10.4 82 164-258 1-82 (101)
22 PLN02757 sirohydrochlorine fer 99.0 6.1E-09 1.3E-13 91.4 13.9 122 161-313 12-135 (154)
23 cd03415 CbiX_CbiC Archaeal sir 99.0 9.6E-09 2.1E-13 86.9 11.6 123 163-308 1-124 (125)
24 PRK00923 sirohydrochlorin coba 98.9 9.3E-09 2E-13 87.1 11.1 121 164-308 3-125 (126)
25 cd03414 CbiX_SirB_C Sirohydroc 98.9 3.7E-08 8E-13 82.2 12.6 114 164-309 2-116 (117)
26 PRK02395 hypothetical protein; 98.7 1.4E-06 3E-11 83.9 17.6 182 164-384 3-186 (279)
27 PRK05782 bifunctional sirohydr 98.6 3.1E-07 6.7E-12 90.0 12.2 130 162-314 6-136 (335)
28 cd03413 CbiK_C Anaerobic cobal 98.3 3.3E-06 7.1E-11 69.1 9.0 90 164-269 2-93 (103)
29 PF01903 CbiX: CbiX; InterPro 98.3 1E-06 2.2E-11 71.9 5.1 95 184-304 9-105 (105)
30 cd03416 CbiX_SirB_N Sirohydroc 98.1 1.4E-05 3E-10 64.9 8.1 74 164-250 1-75 (101)
31 cd03412 CbiK_N Anaerobic cobal 98.0 9.4E-05 2E-09 62.8 11.9 118 164-308 2-125 (127)
32 COG2138 Sirohydrochlorin ferro 97.9 0.00086 1.9E-08 63.3 17.4 220 34-312 2-242 (245)
33 COG2138 Sirohydrochlorin ferro 97.8 0.00011 2.5E-09 69.2 9.6 129 164-330 4-135 (245)
34 PLN02757 sirohydrochlorine fer 97.8 0.0001 2.2E-09 64.7 8.5 110 29-154 8-134 (154)
35 PRK00923 sirohydrochlorin coba 97.4 0.00058 1.3E-08 57.7 7.2 99 34-151 1-126 (126)
36 cd03415 CbiX_CbiC Archaeal sir 97.2 0.0013 2.7E-08 55.8 7.2 98 35-150 1-124 (125)
37 cd03414 CbiX_SirB_C Sirohydroc 97.0 0.0021 4.5E-08 53.4 6.8 97 35-151 1-116 (117)
38 cd03409 Chelatase_Class_II Cla 96.9 0.0021 4.5E-08 51.7 5.9 52 322-385 1-52 (101)
39 PRK05782 bifunctional sirohydr 96.6 0.009 2E-07 58.9 8.9 107 31-155 3-135 (335)
40 cd03412 CbiK_N Anaerobic cobal 96.6 0.006 1.3E-07 51.7 6.3 108 35-150 1-125 (127)
41 PF06180 CbiK: Cobalt chelatas 96.0 0.067 1.5E-06 51.1 10.8 74 164-243 2-81 (262)
42 cd03411 Ferrochelatase_N Ferro 92.3 0.16 3.6E-06 44.6 4.0 36 101-137 109-159 (159)
43 cd03413 CbiK_C Anaerobic cobal 91.1 0.25 5.5E-06 40.3 3.5 66 35-116 1-66 (103)
44 cd03416 CbiX_SirB_N Sirohydroc 83.0 1.1 2.4E-05 35.8 2.7 11 36-46 1-11 (101)
45 PF01903 CbiX: CbiX; InterPro 60.5 7.9 0.00017 30.9 2.7 45 101-146 47-105 (105)
46 COG0761 lytB 4-Hydroxy-3-methy 59.5 12 0.00026 36.1 4.0 60 295-355 43-113 (294)
47 TIGR00539 hemN_rel putative ox 45.7 2.5E+02 0.0055 27.7 11.2 84 138-238 30-115 (360)
48 PRK08898 coproporphyrinogen II 42.6 3.1E+02 0.0068 27.6 11.4 87 138-239 52-138 (394)
49 PRK05660 HemN family oxidoredu 42.5 2.8E+02 0.0062 27.7 11.1 87 138-239 37-123 (378)
50 COG4822 CbiK Cobalamin biosynt 41.7 92 0.002 29.0 6.5 21 223-243 63-83 (265)
51 PF05990 DUF900: Alpha/beta hy 40.7 2E+02 0.0043 26.7 9.0 86 143-241 3-99 (233)
52 PRK09545 znuA high-affinity zi 40.7 3.5E+02 0.0076 26.3 12.5 140 131-310 144-307 (311)
53 cd01994 Alpha_ANH_like_IV This 39.3 2.9E+02 0.0063 24.9 10.1 47 294-358 69-115 (194)
54 PF06309 Torsin: Torsin; Inte 39.3 44 0.00096 28.3 3.9 51 292-356 27-77 (127)
55 PRK09057 coproporphyrinogen II 39.3 3.4E+02 0.0075 27.1 11.1 85 138-239 34-120 (380)
56 COG2108 Uncharacterized conser 39.3 2E+02 0.0043 28.5 8.8 66 177-250 84-151 (353)
57 PRK04930 glutathione-regulated 38.5 92 0.002 28.1 6.1 30 104-151 61-90 (184)
58 PRK04147 N-acetylneuraminate l 38.0 1.7E+02 0.0036 28.1 8.3 74 184-270 56-132 (293)
59 PF00701 DHDPS: Dihydrodipicol 35.3 2E+02 0.0042 27.5 8.3 74 184-270 53-129 (289)
60 PF06309 Torsin: Torsin; Inte 35.1 76 0.0016 26.9 4.7 37 133-173 26-62 (127)
61 cd01017 AdcA Metal binding pro 34.3 3.6E+02 0.0078 25.6 10.0 24 132-155 113-136 (282)
62 COG0635 HemN Coproporphyrinoge 33.0 3.9E+02 0.0084 27.3 10.4 92 137-244 64-158 (416)
63 PRK10076 pyruvate formate lyas 32.2 1.8E+02 0.0038 26.8 7.1 39 284-330 132-170 (213)
64 cd00408 DHDPS-like Dihydrodipi 32.0 1.8E+02 0.004 27.4 7.5 74 184-270 49-125 (281)
65 PRK08599 coproporphyrinogen II 31.9 5.2E+02 0.011 25.6 11.3 86 138-239 31-116 (377)
66 PF04273 DUF442: Putative phos 31.9 2.9E+02 0.0062 22.6 7.9 84 219-330 14-97 (110)
67 KOG2040|consensus 31.9 1.7E+02 0.0037 31.8 7.5 95 132-234 604-711 (1001)
68 cd01018 ZntC Metal binding pro 30.9 3.9E+02 0.0084 25.1 9.5 25 131-155 111-135 (266)
69 PRK13347 coproporphyrinogen II 30.6 5.4E+02 0.012 26.4 11.1 88 138-239 81-168 (453)
70 cd00952 CHBPH_aldolase Trans-o 30.4 1.9E+02 0.0041 28.1 7.3 71 184-267 60-133 (309)
71 PRK05628 coproporphyrinogen II 30.1 5.6E+02 0.012 25.4 11.4 88 137-239 35-124 (375)
72 PF02525 Flavodoxin_2: Flavodo 30.1 3.9E+02 0.0085 23.6 9.1 80 104-201 78-169 (199)
73 TIGR00683 nanA N-acetylneurami 29.7 2.4E+02 0.0052 27.1 7.9 70 184-266 53-125 (290)
74 COG0329 DapA Dihydrodipicolina 29.3 2.4E+02 0.0052 27.3 7.8 74 184-270 56-132 (299)
75 PRK07379 coproporphyrinogen II 28.9 6E+02 0.013 25.6 11.0 85 138-241 47-133 (400)
76 TIGR00674 dapA dihydrodipicoli 28.2 2.8E+02 0.0061 26.4 8.1 74 184-270 50-126 (285)
77 COG0761 lytB 4-Hydroxy-3-methy 27.9 57 0.0012 31.6 3.1 37 161-197 66-113 (294)
78 cd01994 Alpha_ANH_like_IV This 27.7 4.5E+02 0.0098 23.6 11.1 88 125-241 58-145 (194)
79 PF08029 HisG_C: HisG, C-termi 27.5 55 0.0012 25.0 2.4 24 219-242 49-72 (75)
80 cd00950 DHDPS Dihydrodipicolin 27.4 2.9E+02 0.0062 26.2 8.0 74 184-270 52-128 (284)
81 PRK06582 coproporphyrinogen II 27.2 6.5E+02 0.014 25.3 11.6 86 137-239 40-127 (390)
82 TIGR03470 HpnH hopanoid biosyn 26.3 6.1E+02 0.013 24.6 10.3 74 164-243 126-201 (318)
83 PF07302 AroM: AroM protein; 26.1 42 0.00091 31.2 1.8 33 210-243 65-97 (221)
84 PF15186 TEX13: Testis-express 24.9 37 0.00081 29.4 1.1 28 38-65 22-57 (152)
85 PRK00871 glutathione-regulated 24.7 5E+02 0.011 23.1 9.5 78 104-200 55-137 (176)
86 COG4750 LicC CTP:phosphocholin 24.1 88 0.0019 28.7 3.4 25 219-243 31-55 (231)
87 PRK09249 coproporphyrinogen II 24.0 7.9E+02 0.017 25.2 11.1 87 138-238 80-166 (453)
88 TIGR02017 hutG_amidohyd N-form 23.6 1.1E+02 0.0023 29.3 4.1 29 298-332 123-151 (263)
89 TIGR03106 trio_M42_hydro hydro 23.5 1.9E+02 0.0042 28.6 6.1 74 180-264 261-335 (343)
90 PRK03906 mannonate dehydratase 23.4 1.5E+02 0.0033 30.0 5.3 87 215-309 5-92 (385)
91 cd01020 TroA_b Metal binding p 23.2 3.7E+02 0.0081 25.2 7.8 25 131-155 94-118 (264)
92 PRK14457 ribosomal RNA large s 23.1 7.5E+02 0.016 24.5 16.7 56 284-350 258-313 (345)
93 PRK03170 dihydrodipicolinate s 23.1 3.7E+02 0.0081 25.6 7.9 74 184-270 53-129 (292)
94 PTZ00397 macrophage migration 22.8 3.6E+02 0.0079 21.8 6.7 32 343-375 76-108 (116)
95 PRK10481 hypothetical protein; 22.5 57 0.0012 30.4 1.9 33 210-243 68-100 (224)
96 TIGR02313 HpaI-NOT-DapA 2,4-di 22.2 7E+02 0.015 23.9 10.4 71 184-267 52-125 (294)
97 TIGR00695 uxuA mannonate dehyd 22.0 1.8E+02 0.0039 29.5 5.5 89 215-310 5-93 (394)
98 cd00954 NAL N-Acetylneuraminic 21.1 7.2E+02 0.016 23.6 10.5 74 184-270 53-130 (288)
99 PRK12360 4-hydroxy-3-methylbut 21.1 74 0.0016 30.7 2.5 64 291-355 39-115 (281)
100 TIGR00290 MJ0570_dom MJ0570-re 20.8 6.8E+02 0.015 23.2 9.4 84 126-241 59-142 (223)
101 PF12996 DUF3880: DUF based on 20.5 94 0.002 23.6 2.5 21 223-243 27-47 (79)
102 TIGR00216 ispH_lytB (E)-4-hydr 20.4 95 0.0021 30.0 3.1 64 291-355 37-112 (280)
No 1
>KOG1321|consensus
Probab=100.00 E-value=3.2e-59 Score=434.40 Aligned_cols=268 Identities=49% Similarity=0.813 Sum_probs=241.1
Q ss_pred CCCceEEEEEccCCCCChhHHHHHHHHhcCCCCCcCCch--hhhhh------ccHHHHHHhcccCCc---cccc------
Q psy5712 31 SKPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPE--AWSLH------CQEKNARSTKEIPGN---RRWV------ 93 (386)
Q Consensus 31 ~~~k~aiLlvn~GsP~~~~~v~~fL~~~~~d~~vi~~p~--~~~l~------~~~~~~~~Y~~igg~---~~~t------ 93 (386)
.++|+||||||||||++.+||.+||.++|.|+++|++|. |..|+ +.|++.++|++|||+ +.||
T Consensus 35 ~k~ktgilllNmGGP~~lddV~~FL~rLfaD~DiI~Lp~~~Q~~lakfIak~RtPKvqe~Y~~IGGGSPir~wT~~Q~~~ 114 (395)
T KOG1321|consen 35 KKPKTGILLLNMGGPETLDDVQDFLYRLFADPDIIPLPAFLQKTLAKFIAKRRTPKVQEQYREIGGGSPIRKWTEYQAEE 114 (395)
T ss_pred cCCCceEEEEcCCCCcchhhHHHHHHHHhcCCCeeeCCHHHHhhHHHHHHHhcCchHHHHHHhccCCCchhHHHHHHHHH
Confidence 356899999999999999999999999999999999993 54443 299999999999877 7788
Q ss_pred -----ccccccccC-----------------------CCCCEEEEEEecCccc-----------------ccCCCCCceE
Q psy5712 94 -----SDIEVDSAP-----------------------GTAERVVVIFSQVSSV-----------------KLGSPSNISW 128 (386)
Q Consensus 94 -----~~~~~~~~~-----------------------~g~~~~iv~~p~y~~~-----------------~~~~~~~~~~ 128 (386)
++.+|.+++ +|++| +|+|||||++ +.....+++|
T Consensus 115 m~k~Ld~~~petaphk~YVgfRY~~PlTEea~~qikkd~v~r-~VafsqYPQyS~sTsGSSln~l~r~~r~~~~~~~~~w 193 (395)
T KOG1321|consen 115 MCKILDKKCPETAPHKPYVGFRYAHPLTEEALEQIKKDGVTR-AVAFSQYPQYSCSTSGSSLNELWRQFREDGYERDIKW 193 (395)
T ss_pred HHHHHHhcCcccCCccceeeeeecCcccHHHHHHHHhcCcee-EEeeccCCceeeecCcccHHHHHHHHHhcCcccCCce
Confidence 334444333 39999 9999999843 1134678999
Q ss_pred EEeccCCCChHHHHHHHHHHHHHHHhCCcccCCceEEEEEecCcchhhhccCCCcHHHHHHHHHHHHHHhcCCCCceeEe
Q psy5712 129 SLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVW 208 (386)
Q Consensus 129 ~~i~~~~~~p~~i~a~~~~I~~~l~~~~~~~~~~~~ll~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~~~~~~~~~ 208 (386)
+.|++|+.+++||++|+++|.+.|+.++.+.|+++.|+|||||+|+++|.+||||+.|+.+++++++++|+..++++++|
T Consensus 194 siIdrW~t~~glIkafA~~I~keL~~F~~~~r~~VVIlFSAHslPms~Vn~GDpY~~Ei~atv~~iMeeL~~~N~y~law 273 (395)
T KOG1321|consen 194 SIIDRWPTREGLIKAFAENIEKELQTFPEPVRDDVVILFSAHSLPMSVVNAGDPYPAEIAATVDLIMEELKYKNPYRLAW 273 (395)
T ss_pred EeeccccccchHHHHHHHHHHHHHHhcCCcccccEEEEEecCCCcHHHHhcCCCcHHHHHHHHHHHHHHhccCCcchhhh
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999989999999
Q ss_pred eeeeccCCCCCccHHHHHHHHHHCCCCEEEEEccccccccchhhhhhhHHHHHHHhccccceeEEEecCCCCCCCcceEE
Q psy5712 209 QSKVGPLPWLGPFTDDALKGYVKQGKKNFLLVPIAFVNEHIETLHEMDIEYCHDLGKEVSVFSMYLFTGPGSPSNISWSL 288 (386)
Q Consensus 209 qs~~G~~~w~~P~i~d~l~~L~~~G~~~IvvlPL~f~~~~~eT~~~~d~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 288 (386)
||++||++|++|.++++++.|.+.|.++++++|+.|+++|+||++++|+||+.+ +.+.|+++++|++.
T Consensus 274 QSkVGP~pWL~p~Tde~i~~lgk~g~knll~VPIaFvSeHIETL~EiD~ey~e~-a~k~gve~~~Rv~s----------- 341 (395)
T KOG1321|consen 274 QSKVGPLPWLGPATDEVIEGLGKKGVKNLLLVPIAFVSEHIETLHEIDIEYIEE-ALKKGVENWKRVES----------- 341 (395)
T ss_pred hcccCCccccccchHHHHHHHHhhcccceEEEeehhhhHHHHHHHHhhHHHHHH-HHHHhhhhheeccC-----------
Confidence 999999999999999999999999999999999999999999999999999654 44567889999888
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHhcCC
Q psy5712 289 IDRWSTHPLLCKVFAERIQEELKQFP 314 (386)
Q Consensus 289 I~~~~d~p~fI~ala~~I~~~l~~~~ 314 (386)
+|.+|.||++|||.|.++|....
T Consensus 342 ---ln~~p~fI~~lADlV~ehL~s~~ 364 (395)
T KOG1321|consen 342 ---LNGNPTFIEGLADLVAEHLKSNQ 364 (395)
T ss_pred ---CCCCccHHHHHHHHHHHhhhhhh
Confidence 99999999999999999997543
No 2
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=100.00 E-value=1.8e-56 Score=428.01 Aligned_cols=261 Identities=33% Similarity=0.560 Sum_probs=228.9
Q ss_pred CCceEEEEEccCCCCChhHHHHHHHHhcCCCCCcCCchhhh--hh------ccHHHHHHhcccCCc---cccc-------
Q psy5712 32 KPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPEAWS--LH------CQEKNARSTKEIPGN---RRWV------- 93 (386)
Q Consensus 32 ~~k~aiLlvn~GsP~~~~~v~~fL~~~~~d~~vi~~p~~~~--l~------~~~~~~~~Y~~igg~---~~~t------- 93 (386)
.+|+||||||||||++.+||++||++||+|++|+++|.+.+ |+ ++++++++|+.|||. +.+|
T Consensus 3 ~~k~avLL~nlG~P~~~e~v~~yL~~~~~d~~v~~~~~~~~~~l~~~I~~~R~~~~~~~Y~~igg~sPL~~~T~~q~~~L 82 (320)
T COG0276 3 MKKTAVLLLNLGGPETLEDVRPYLKNFLSDRRVIELPRPLWYPLAGIILPLRLKKVAKNYESIGGKSPLNVITRAQAAAL 82 (320)
T ss_pred CCceEEEEEecCCCCChHHHHHHHHHHhcCCCCCCCchhhhhhhhhhhhhhccHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 46899999999999999999999999999999999986322 32 289999999999986 5555
Q ss_pred -cccc--------------cc-------ccCCCCCEEEEEEecCccc---------c---c---CCCCCceEEEeccCCC
Q psy5712 94 -SDIE--------------VD-------SAPGTAERVVVIFSQVSSV---------K---L---GSPSNISWSLIDRWST 136 (386)
Q Consensus 94 -~~~~--------------~~-------~~~~g~~~~iv~~p~y~~~---------~---~---~~~~~~~~~~i~~~~~ 136 (386)
+.+. |. +..+|+++ ||++|+||++ + + +....+.+++|++|++
T Consensus 83 ~~~L~~~~~~V~~amry~~P~i~~~v~~l~~~gv~~-iv~~pLyPqyS~sTt~s~~~~~~~al~~~~~~~~i~~I~~~~~ 161 (320)
T COG0276 83 EERLDLPDFKVYLAMRYGPPFIEEAVEELKKDGVER-IVVLPLYPQYSSSTTGSYVDELARALKELRGQPKISTIPDYYD 161 (320)
T ss_pred HHHhCCCCccEEEeecCCCCcHHHHHHHHHHcCCCe-EEEEECCcccccccHHHHHHHHHHHHHhcCCCCceEEecCccC
Confidence 1221 11 12349999 9999988833 1 1 2235689999999999
Q ss_pred ChHHHHHHHHHHHHHHHhCCcccCCceEEEEEecCcchhhhccCCCcHHHHHHHHHHHHHHhcCC-CCceeEeeeeeccC
Q psy5712 137 HPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNC-NPYHLVWQSKVGPL 215 (386)
Q Consensus 137 ~p~~i~a~~~~I~~~l~~~~~~~~~~~~ll~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~~-~~~~~~~qs~~G~~ 215 (386)
+|.||++|+++|++.+++++ +++..+||||||+|.+.++.||||+.||.+++++++++||.. ..+.++|||++|+.
T Consensus 162 ~p~yI~a~a~~I~~~~~~~~---~~~~~llfSaHglP~~~~~~GDpY~~q~~~t~~li~e~lg~~~~~~~~~~QS~~G~~ 238 (320)
T COG0276 162 EPLYIEALADSIREKLAKHP---RDDDVLLFSAHGLPKRYIDEGDPYPQQCQETTRLIAEALGLPEEEYDLTFQSRFGPE 238 (320)
T ss_pred ChHHHHHHHHHHHHHHHhcC---CCCeEEEEecCCCchhhhhcCCchHHHHHHHHHHHHHHcCCCchheeEEeecCCCCC
Confidence 99999999999999999986 357799999999999999999999999999999999999963 58999999999999
Q ss_pred CCCCccHHHHHHHHHHCCCCEEEEEccccccccchhhhhhhHHHHHHHhccccceeEEEecCCCCCCCcceEEecCCCCC
Q psy5712 216 PWLGPFTDDALKGYVKQGKKNFLLVPIAFVNEHIETLHEMDIEYCHDLGKEVSVFSMYLFTGPGSPSNISWSLIDRWSTH 295 (386)
Q Consensus 216 ~w~~P~i~d~l~~L~~~G~~~IvvlPL~f~~~~~eT~~~~d~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~I~~~~d~ 295 (386)
+|++|+++|++++|.++|+++|+|+|++|++||+||++|+|+|+ ++++++.|+.++.|+|| +|++
T Consensus 239 ~WL~P~t~~~l~~L~~~g~k~iiv~pigFvsDhlETL~Eid~e~-~e~~~~~Gg~~y~rip~--------------lN~~ 303 (320)
T COG0276 239 PWLQPYTDDLLEELGEKGVKKIIVVPIGFVSDHLETLYEIDHEY-RELAEEAGGKKYVRIPC--------------LNDS 303 (320)
T ss_pred CCCCCCHHHHHHHHHhcCCCeEEEECCchhhhhHHHHHHHHHHH-HHHHHHhCCccEEecCC--------------CCCC
Confidence 99999999999999999999999999999999999999999986 78888999889999999 9999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy5712 296 PLLCKVFAERIQEELK 311 (386)
Q Consensus 296 p~fI~ala~~I~~~l~ 311 (386)
|.||++|++.|++.+.
T Consensus 304 p~fi~~la~lv~~~~~ 319 (320)
T COG0276 304 PEFIDALADLVRELLN 319 (320)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998764
No 3
>PLN02449 ferrochelatase
Probab=100.00 E-value=1.4e-55 Score=443.22 Aligned_cols=266 Identities=32% Similarity=0.538 Sum_probs=229.6
Q ss_pred CCCCCceEEEEEccCCCCChhHHHHHHHHhcCCCCCcCCch-----hhhhhc------cHHHHHHhcccCCc---ccccc
Q psy5712 29 DSSKPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPE-----AWSLHC------QEKNARSTKEIPGN---RRWVS 94 (386)
Q Consensus 29 ~~~~~k~aiLlvn~GsP~~~~~v~~fL~~~~~d~~vi~~p~-----~~~l~~------~~~~~~~Y~~igg~---~~~t~ 94 (386)
..+++|+||||+|||||++++||++||+|||+|++||++|. +++|+. +++++++|++|||+ +.+|+
T Consensus 84 ~~~~~k~gVLLlNlGgPes~~dV~pFL~nlfsD~~II~lP~~~~~~~~~La~~Ia~~R~~ks~~~Y~~IGGgSPL~~iT~ 163 (485)
T PLN02449 84 KVSEEKVGVLLLNLGGPETLDDVQPFLYNLFADPDIIRLPRLFRFLQKPLAQFISNLRAPKSKEGYASIGGGSPLRKITD 163 (485)
T ss_pred cccCCceEEEEEeCCCCCChhHHHHHHHHhcCCCCeeeCchhhhHHHHHHHHHHhccCcHHHHHHHHHCCCCCchHHHHH
Confidence 34566789999999999999999999999999999999993 244432 78999999999875 55551
Q ss_pred ----ccc--------------------cc-------ccCCCCCEEEEEEecCccc------------cc---C--CCCCc
Q psy5712 95 ----DIE--------------------VD-------SAPGTAERVVVIFSQVSSV------------KL---G--SPSNI 126 (386)
Q Consensus 95 ----~~~--------------------~~-------~~~~g~~~~iv~~p~y~~~------------~~---~--~~~~~ 126 (386)
+++ |. +..+|+++ ||++||||++ .+ . ....+
T Consensus 164 ~Qa~~Lq~~L~~~~~~~~V~~aMRY~~P~iedal~~l~~~G~~~-iVvLPLYPQyS~sTtgSs~~~l~~~~~~~~~~~~~ 242 (485)
T PLN02449 164 EQAEALAKALEAKNLPAKVYVGMRYWHPFTEEAIDQIKADGITK-LVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNM 242 (485)
T ss_pred HHHHHHHHHHhccCCCeEEEEhhhcCCCCHHHHHHHHHhcCCCe-EEEEECCcccccccHHHHHHHHHHHHhhcccccCC
Confidence 111 11 12349999 9999998843 11 1 12356
Q ss_pred eEEEeccCCCChHHHHHHHHHHHHHHHhCCcccCCceEEEEEecCcchhhh-ccCCCcHHHHHHHHHHHHHHhcCC---C
Q psy5712 127 SWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAV-NRGDPYPSEVGATVQGVMQELNNC---N 202 (386)
Q Consensus 127 ~~~~i~~~~~~p~~i~a~~~~I~~~l~~~~~~~~~~~~ll~saHg~P~~~v-~~Gd~y~~~~~~~~~~l~~~lg~~---~ 202 (386)
.+++|++|+++|+||+|+++.|+++++.++. +++..|||||||+|++++ ++||||+.||++++++++++|+.. .
T Consensus 243 ~~~~I~~~~~~p~yI~A~a~~I~~~l~~~~~--~~~~~LlFSAHGlP~~~v~~~GDpY~~q~~~ta~lI~~~L~~~~~~~ 320 (485)
T PLN02449 243 QHTVIPSWYQREGYVKAMADLIKKELAKFSD--PEEVHIFFSAHGVPVSYVEEAGDPYKAQMEECVDLIMEELKARGILN 320 (485)
T ss_pred eeEEeccccCChHHHHHHHHHHHHHHHhccC--cCCcEEEEecCCChhhhhhhcCCChHHHHHHHHHHHHHHhCCCCCCC
Confidence 8999999999999999999999999987642 345789999999999999 889999999999999999999874 4
Q ss_pred CceeEeeeeeccCCCCCccHHHHHHHHHHCCCCEEEEEccccccccchhhhhhhHHHHHHHhccccceeEEEecCCCCCC
Q psy5712 203 PYHLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLLVPIAFVNEHIETLHEMDIEYCHDLGKEVSVFSMYLFTGPGSPS 282 (386)
Q Consensus 203 ~~~~~~qs~~G~~~w~~P~i~d~l~~L~~~G~~~IvvlPL~f~~~~~eT~~~~d~e~~~~~~~~~g~~~~~~~~~~~~~~ 282 (386)
+|.++|||++|+++|++|+++|+|++|.++|+++|+|+|++|++||+||++|+|+|+ ++++++.|++.|.|+||
T Consensus 321 ~~~layQSR~Gp~eWL~P~t~d~L~~L~~~Gvk~VlvvPigFvSDhiETL~EiDiE~-re~a~e~G~~~~~rVP~----- 394 (485)
T PLN02449 321 RHTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSLLAVPISFVSEHIETLEEIDMEY-RELALESGIENWGRVPA----- 394 (485)
T ss_pred CeEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCcccccchHHHHHHHHHH-HHHHHHcCCceEEEcCC-----
Confidence 799999999999999999999999999999999999999999999999999999997 78889999988999999
Q ss_pred CcceEEecCCCCCHHHHHHHHHHHHHHHhc
Q psy5712 283 NISWSLIDRWSTHPLLCKVFAERIQEELKQ 312 (386)
Q Consensus 283 ~~~~~~I~~~~d~p~fI~ala~~I~~~l~~ 312 (386)
+|++|.||++|+++|.+.+..
T Consensus 395 ---------LN~~p~FI~~La~lV~~~l~~ 415 (485)
T PLN02449 395 ---------LGCEPTFISDLADAVIEALPY 415 (485)
T ss_pred ---------CCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999864
No 4
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=100.00 E-value=7.7e-55 Score=423.39 Aligned_cols=258 Identities=33% Similarity=0.555 Sum_probs=204.5
Q ss_pred ceEEEEEccCCCCChhHHHHHHHHhcCCCCCcCCch--hhhhhc------cHHHHHHhcccCCc---cccc----cccc-
Q psy5712 34 KTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPE--AWSLHC------QEKNARSTKEIPGN---RRWV----SDIE- 97 (386)
Q Consensus 34 k~aiLlvn~GsP~~~~~v~~fL~~~~~d~~vi~~p~--~~~l~~------~~~~~~~Y~~igg~---~~~t----~~~~- 97 (386)
|+||||||||||++++||++||++||+|++|+++|. +++|++ +++++++|++|||+ ..+| ++++
T Consensus 1 K~aVLL~n~G~P~s~~~v~~yL~~~l~d~~vi~lp~~~~~~L~~~I~~~R~~~~~~~Y~~ig~~SPL~~~t~~qa~~l~~ 80 (316)
T PF00762_consen 1 KTAVLLVNLGTPESPEDVRPYLREFLSDRRVIDLPWLWQPILAGIILPFRPKKSAERYQKIGGGSPLNEITRRQAEALQQ 80 (316)
T ss_dssp EEEEEEEE----SSGGGHHHHHHHHTTTTTTSHSTTTTHHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCCHHHHHHHHHHHhCCCCCCCCCchhHHHHHHHhhhhhHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999993 233432 88999999999654 4455 1111
Q ss_pred -------------------cc-------ccCCCCCEEEEEEecCccc------------c---cCCCCCceEEEeccCCC
Q psy5712 98 -------------------VD-------SAPGTAERVVVIFSQVSSV------------K---LGSPSNISWSLIDRWST 136 (386)
Q Consensus 98 -------------------~~-------~~~~g~~~~iv~~p~y~~~------------~---~~~~~~~~~~~i~~~~~ 136 (386)
|. +...|+++ |+++||||++ . ......+++++|++|++
T Consensus 81 ~L~~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~-ivvlPLyPqyS~~ttgs~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (316)
T PF00762_consen 81 RLDERGVDVEVYYAMRYGPPSIEDALEELKADGVDR-IVVLPLYPQYSSSTTGSYLDEVERALKKSRPNPKVRFIPSFYD 159 (316)
T ss_dssp HHHHH-EEEEEEEEESSSSSBHHHHHHHHHHTT-SE-EEEEESSSS--TTTHHHHHHHHHHHHHHTHSSSEEEEE---TT
T ss_pred HHHhcCCCeeEEEEeccCCCCHHHHHHHHHHcCCCe-EEEEeCCCchhHhhHHHHHHHHHHHHHhcCCCCeEEEeCCccC
Confidence 11 12349999 9999998843 1 12356789999999999
Q ss_pred ChHHHHHHHHHHHHHHHhCCcccCCceEEEEEecCcchhhh-ccCCCcHHHHHHHHHHHHHHhcCCCCceeEeeeeeccC
Q psy5712 137 HPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAV-NRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPL 215 (386)
Q Consensus 137 ~p~~i~a~~~~I~~~l~~~~~~~~~~~~ll~saHg~P~~~v-~~Gd~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~ 215 (386)
||.||++++++|+++++..+. .+...+||||||+|.+++ .+||||..+|.+|++++++++|.. +|.++|||++|+.
T Consensus 160 ~p~yi~a~~~~i~~~l~~~~~--~~~~~llfSaHglP~~~~~~~GdpY~~~~~~t~~~i~~~l~~~-~~~~~fQS~~g~~ 236 (316)
T PF00762_consen 160 HPAYIEALAERIREALERFPR--GEPDHLLFSAHGLPQRYVEDKGDPYPAQCEETARLIAERLGLP-EWRLAFQSRFGPG 236 (316)
T ss_dssp -HHHHHHHHHHHHHHHTTS-H--CCCEEEEEEEE--BHHHHTCCT-SHHHHHHHHHHHHHHHTTTS-SEEEEEES-SSSS
T ss_pred CHHHHHHHHHHHHHHHHhcCC--CCCCEEEEccCCCCccccccCCCChHHHHHHHHHHHHHHcCCC-ceEEEEECCCCCC
Confidence 999999999999999988741 124699999999999999 579999999999999999999987 5999999999999
Q ss_pred CCCCccHHHHHHHHHHCCCCEEEEEccccccccchhhhhhhHHHHHHHhccccceeEEEecCCCCCCCcceEEecCCCCC
Q psy5712 216 PWLGPFTDDALKGYVKQGKKNFLLVPIAFVNEHIETLHEMDIEYCHDLGKEVSVFSMYLFTGPGSPSNISWSLIDRWSTH 295 (386)
Q Consensus 216 ~w~~P~i~d~l~~L~~~G~~~IvvlPL~f~~~~~eT~~~~d~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~I~~~~d~ 295 (386)
+|++|+++++|++|+++|+++|+|+|++|++||+||++|+|+++ ++.+++.|++++.++|| +|++
T Consensus 237 ~WL~P~~~~~l~~l~~~G~~~V~v~p~gFv~D~lETl~eidie~-re~~~~~G~~~~~~ip~--------------lN~~ 301 (316)
T PF00762_consen 237 EWLGPSTEDVLEELAKEGVKRVVVVPPGFVSDCLETLYEIDIEY-RELAEEAGGEEFVRIPC--------------LNDS 301 (316)
T ss_dssp -BSSSBHHHHHHHHHHCT-SEEEEEETT-SSSSHHHHCCCCCHH-HHHHHHHTCCEEEE-----------------STT-
T ss_pred CCccccHHHHHHHHHhcCCCeEEEECCccccccHhHHHHHHHHH-HHHHHHcCCceEEEeCC--------------CCCC
Confidence 99999999999999999999999999999999999999999996 78889999989999999 9999
Q ss_pred HHHHHHHHHHHHHHH
Q psy5712 296 PLLCKVFAERIQEEL 310 (386)
Q Consensus 296 p~fI~ala~~I~~~l 310 (386)
|.||++|+++|+++|
T Consensus 302 ~~fi~~La~~v~~~~ 316 (316)
T PF00762_consen 302 PEFIEALADLVREHL 316 (316)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCc
Confidence 999999999999875
No 5
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=100.00 E-value=3.6e-53 Score=413.40 Aligned_cols=261 Identities=31% Similarity=0.572 Sum_probs=223.3
Q ss_pred CCceEEEEEccCCCCChhHHHHHHHHhcCCCCCcCCch---hhh----hh--ccHHHHHHhcccCCc---ccccc-----
Q psy5712 32 KPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPE---AWS----LH--CQEKNARSTKEIPGN---RRWVS----- 94 (386)
Q Consensus 32 ~~k~aiLlvn~GsP~~~~~v~~fL~~~~~d~~vi~~p~---~~~----l~--~~~~~~~~Y~~igg~---~~~t~----- 94 (386)
++|+||||||||||++.+||++||++||+|++||++|. +++ |. ++++++++|++|||+ ..+|+
T Consensus 3 ~~k~~VlL~n~G~P~~~~~v~~yL~~~~~D~~vi~~p~~~~~~~l~~~I~~~R~~k~~~~Y~~igg~SPl~~~t~~q~~~ 82 (322)
T TIGR00109 3 RKKTGVLLMNLGGPDKLEEVERFLKQLFADPRIIDISRAKWRKPLAKMILPLRSPKIAKNYEAIGGGSPLLQITEQQAHA 82 (322)
T ss_pred CCceEEEEEeCCCCCCHHHHHHHHHHHcCCcchhcCCccccccchHHHHHhhccHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 45789999999999999999999999999999999984 222 22 288999999999875 44551
Q ss_pred ---ccc---------------cc-------ccCCCCCEEEEEEecCccc------------cc---CCCC-CceEEEecc
Q psy5712 95 ---DIE---------------VD-------SAPGTAERVVVIFSQVSSV------------KL---GSPS-NISWSLIDR 133 (386)
Q Consensus 95 ---~~~---------------~~-------~~~~g~~~~iv~~p~y~~~------------~~---~~~~-~~~~~~i~~ 133 (386)
.+. |. +..+|+++ |+++|+||++ .+ .... .+.+++|++
T Consensus 83 l~~~l~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~-iv~lPL~PqyS~~t~gs~~~~~~~~l~~~~~~~~~~~~i~~ 161 (322)
T TIGR00109 83 LEKRLPNEIDFKVYIAMRYGEPFTEEAVKELLKDGVER-AVVLPLYPHFSSSTTGSSFNELAEALKKLRSLRPTISVIES 161 (322)
T ss_pred HHHHhccCCCceEEEeeccCCCCHHHHHHHHHhcCCCe-EEEEeCCcccccccHHHHHHHHHHHHHhcccCCCeEEEeCc
Confidence 111 11 12349999 9999988732 11 1122 278999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCcccCCceEEEEEecCcchhhhccCCCcHHHHHHHHHHHHHHhcCCCCceeEeeeeec
Q psy5712 134 WSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVG 213 (386)
Q Consensus 134 ~~~~p~~i~a~~~~I~~~l~~~~~~~~~~~~ll~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G 213 (386)
|+++|.||++++++|+++++..+.. +++.|||||||+|.+++++||+|+.+|.++++++++++|...+|.++|||++|
T Consensus 162 ~~~~p~yi~a~~~~I~~~l~~~~~~--~~~~llfSaHglP~~~~~~Gd~Y~~~~~~ta~~l~~~l~~~~~~~~~fQS~~g 239 (322)
T TIGR00109 162 WYDNPKYIKALADSIKETLASFPEP--DNAVLLFSAHGLPQSYVDEGDPYPAECEATTRLIAEKLGFPNEYRLTWQSRVG 239 (322)
T ss_pred cccCcHHHHHHHHHHHHHHHhcCCc--CCcEEEEeCCCCchhHhhCCCChHHHHHHHHHHHHHHcCCCCCeEEEEeCCCC
Confidence 9999999999999999999876432 45689999999999999999999999999999999999843579999999999
Q ss_pred cCCCCCccHHHHHHHHHHCCCCEEEEEccccccccchhhhhhhHHHHHHHhccccceeEEEecCCCCCCCcceEEecCCC
Q psy5712 214 PLPWLGPFTDDALKGYVKQGKKNFLLVPIAFVNEHIETLHEMDIEYCHDLGKEVSVFSMYLFTGPGSPSNISWSLIDRWS 293 (386)
Q Consensus 214 ~~~w~~P~i~d~l~~L~~~G~~~IvvlPL~f~~~~~eT~~~~d~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~I~~~~ 293 (386)
+++|++|+++++|++|.++|+++|+|+|++|++||+||++|+|+|+ ++.+++.|++++.++|| +|
T Consensus 240 ~~~Wl~P~~~~~l~~l~~~G~k~V~vvP~gFv~D~lETl~ei~~e~-~~~~~~~G~~~~~~vp~--------------lN 304 (322)
T TIGR00109 240 PEPWLGPYTEELLEKLGEQGVQHIVVVPIGFTADHLETLYEIDEEY-REVAEDAGGDKYQRCPA--------------LN 304 (322)
T ss_pred CCCcCCCCHHHHHHHHHHcCCceEEEECCcccccchhHHHhhhHHH-HHHHHHcCCCeEEECCC--------------CC
Confidence 9999999999999999999999999999999999999999999996 67888899888999998 99
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy5712 294 THPLLCKVFAERIQEEL 310 (386)
Q Consensus 294 d~p~fI~ala~~I~~~l 310 (386)
+||.||++|+++|++.+
T Consensus 305 ~~p~fi~~l~~~v~~~~ 321 (322)
T TIGR00109 305 AKPEFIEAMATLVKKKL 321 (322)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999998875
No 6
>PRK12435 ferrochelatase; Provisional
Probab=100.00 E-value=6.2e-53 Score=408.65 Aligned_cols=256 Identities=25% Similarity=0.446 Sum_probs=219.3
Q ss_pred CCCceEEEEEccCCCCChhHHHHHHHHhcCCCCCcCCchhhhhhccHHHHHHhcccCCc---ccccc--------ccc--
Q psy5712 31 SKPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPEAWSLHCQEKNARSTKEIPGN---RRWVS--------DIE-- 97 (386)
Q Consensus 31 ~~~k~aiLlvn~GsP~~~~~v~~fL~~~~~d~~vi~~p~~~~l~~~~~~~~~Y~~igg~---~~~t~--------~~~-- 97 (386)
+++|+||||+|||||++++||++||+|+++|+. |.+.+ ..+++++|++|||+ +.+|+ .+.
T Consensus 1 ~~~~~avlll~~GgP~~~~~V~pfL~ni~~g~~----~~~~~---l~~~~~~Y~~iGG~SPL~~~T~~qa~~L~~~L~~~ 73 (311)
T PRK12435 1 MKKKIGLLVMAYGTPYKEEDIERYYTHIRHGRK----PSEEM---LQDLKDRYEAIGGISPLAKITDEQAKALEKALNEV 73 (311)
T ss_pred CCCcEEEEEEeCCCCCCHHHHHHHHHHhcCCCC----CCHHH---HHHHHHHHHHhCCcChHHHHHHHHHHHHHHHHhhc
Confidence 356789999999999999999999999999983 44445 47889999999885 55551 111
Q ss_pred ----------------cc-------ccCCCCCEEEEEEecCccc------------cc--CCCCCceEEEeccCCCChHH
Q psy5712 98 ----------------VD-------SAPGTAERVVVIFSQVSSV------------KL--GSPSNISWSLIDRWSTHPLL 140 (386)
Q Consensus 98 ----------------~~-------~~~~g~~~~iv~~p~y~~~------------~~--~~~~~~~~~~i~~~~~~p~~ 140 (386)
|. +..+||++ |+++||||++ .+ .....+++++|++|++||.|
T Consensus 74 ~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~-iv~lpLyPqyS~~Tt~s~~~~~~~~~~~~~~~~~~~i~~~~~~p~y 152 (311)
T PRK12435 74 QDEVEFKLYLGLKHIEPFIEDAVEQMHNDGIEE-AISIVLAPHYSTFSVKSYNKRAKEEAEKLGGPTITSIESWYDEPKF 152 (311)
T ss_pred cCCCCceEEEEecCCCCCHHHHHHHHHHcCCCe-EEEEECCCccccccHHHHHHHHHHHhcccCCCeEEEeCCccCChHH
Confidence 11 12349999 8889888743 11 22345789999999999999
Q ss_pred HHHHHHHHHHHHHhCCcccCCceEEEEEecCcchhhhccCCCcHHHHHHHHHHHHHHhcCCCCceeEeeeee-ccCCCCC
Q psy5712 141 CKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKV-GPLPWLG 219 (386)
Q Consensus 141 i~a~~~~I~~~l~~~~~~~~~~~~ll~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~-G~~~w~~ 219 (386)
|+|++++|+++++.++...+++..|||||||+|.+++++||||..+|.++++++++++|.. +|.++|||++ |+.+|++
T Consensus 153 i~a~a~~I~~~l~~~~~~~~~~~~llfSaHslP~~~i~~GDpY~~q~~~t~~~v~~~l~~~-~~~l~yQSr~~g~~~WL~ 231 (311)
T PRK12435 153 IQYWADQIKETFAQIPEEEREKAVLIVSAHSLPEKIIAAGDPYPDQLEETADLIAEQANVE-HYAIGWQSEGNTPDPWLG 231 (311)
T ss_pred HHHHHHHHHHHHHHcCcccccceEEEEecCCCchhHhhCCCCHHHHHHHHHHHHHHHcCCC-CCeEeeecCCCCCCCCCC
Confidence 9999999999999875444456789999999999999999999999999999999999986 7999999996 7899999
Q ss_pred ccHHHHHHHHHHC-CCCEEEEEccccccccchhhhhhhHHHHHHHhccccceeEEEecCCCCCCCcceEEecCCCCCHHH
Q psy5712 220 PFTDDALKGYVKQ-GKKNFLLVPIAFVNEHIETLHEMDIEYCHDLGKEVSVFSMYLFTGPGSPSNISWSLIDRWSTHPLL 298 (386)
Q Consensus 220 P~i~d~l~~L~~~-G~~~IvvlPL~f~~~~~eT~~~~d~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~I~~~~d~p~f 298 (386)
|+++++|++|+++ |+++|+|+|++|++||+||++|+|+|+ ++.+++.|++ +.|++| +|++|.|
T Consensus 232 P~t~d~l~~l~~~~G~k~v~vvpigFvsDhlETl~Eldie~-~e~a~~~G~~-~~r~~~--------------lN~~p~f 295 (311)
T PRK12435 232 PDVQDLTRDLYEEHGYKSFIYTPVGFVAEHLEVLYDNDYEC-KVVTDEIGAK-YYRPEM--------------PNADPLF 295 (311)
T ss_pred CCHHHHHHHHHHhcCCceEEEECCchhhhhHHHHHHHHHHH-HHHHHHcCCc-EEeccC--------------CCCCHHH
Confidence 9999999999988 999999999999999999999999996 6788889985 888888 9999999
Q ss_pred HHHHHHHHHHHHh
Q psy5712 299 CKVFAERIQEELK 311 (386)
Q Consensus 299 I~ala~~I~~~l~ 311 (386)
|++|+++|++.++
T Consensus 296 i~~La~lv~~~~~ 308 (311)
T PRK12435 296 IDALADVVLKKLK 308 (311)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999874
No 7
>PRK00035 hemH ferrochelatase; Reviewed
Probab=100.00 E-value=6.3e-49 Score=386.34 Aligned_cols=265 Identities=30% Similarity=0.530 Sum_probs=225.5
Q ss_pred CCceEEEEEccCCCCChhHHHHHHHHhcCCCCCcCCchh---hhhhc------cHHHHHHhcccCCc---ccccc-----
Q psy5712 32 KPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPEA---WSLHC------QEKNARSTKEIPGN---RRWVS----- 94 (386)
Q Consensus 32 ~~k~aiLlvn~GsP~~~~~v~~fL~~~~~d~~vi~~p~~---~~l~~------~~~~~~~Y~~igg~---~~~t~----- 94 (386)
++|+||||||||||++++||++||++||+|++|+++|.+ ++|+. +++++++|++|||+ ..+|.
T Consensus 3 ~~k~~vll~n~G~P~~~~~v~~fl~~~~~d~~v~~~~~~~~~~~l~~~i~~~r~~~~~~~Y~~ig~gSPl~~~t~~q~~~ 82 (333)
T PRK00035 3 MPKDAVLLLNLGGPETPEDVRPFLKNFLSDRRVIDLPRPLWQPLLAGIILPERLPKVAKHYASIGGGSPLNVITRRQAEA 82 (333)
T ss_pred CCceEEEEEeCCCCCCHHHHHHHHHHHcCCCCcccCCHHHHHHHHHHHhhhhhHHHHHHHHHHcCCCChhHHHHHHHHHH
Confidence 468999999999999999999999999999999999862 33332 88999999999864 33441
Q ss_pred ---ccc----------------cc-------ccCCCCCEEEEEEecCccc------------cc---CCCCCceEEEecc
Q psy5712 95 ---DIE----------------VD-------SAPGTAERVVVIFSQVSSV------------KL---GSPSNISWSLIDR 133 (386)
Q Consensus 95 ---~~~----------------~~-------~~~~g~~~~iv~~p~y~~~------------~~---~~~~~~~~~~i~~ 133 (386)
.+. |. +...|+++ |+++|+||.+ .+ .....+.++++++
T Consensus 83 L~~~l~~~~~~~~V~~am~y~~P~i~eal~~l~~~G~~~-IivlPL~p~~s~~t~gs~~~~i~~~~~~~~~~~~i~~i~~ 161 (333)
T PRK00035 83 LQAELAARGPDLPVYLGMRYWNPSIEEALEALKADGVDR-IVVLPLYPQYSYSTTASYFEDLARALAKLRLQPEIRFIRS 161 (333)
T ss_pred HHHHHhccCCCceEEEeecCCCCCHHHHHHHHHhcCCCE-EEEEECCCccccccHHHHHHHHHHHHHhcCCCCcEEEeCC
Confidence 111 11 12349999 9999998832 11 2223689999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCcccCCceEEEEEecCcchhhhccCCCcHHHHHHHHHHHHHHhcC-CCCceeEeeeee
Q psy5712 134 WSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNN-CNPYHLVWQSKV 212 (386)
Q Consensus 134 ~~~~p~~i~a~~~~I~~~l~~~~~~~~~~~~ll~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~-~~~~~~~~qs~~ 212 (386)
|+++|.|+++++++|+++++..+... ++.+||||+||+|.+.+.+||+|..+|.++++++++++|. ..+|.++|||++
T Consensus 162 ~~~~p~~i~~l~~~I~~~~~~~~~~~-~~~~llfs~HG~P~~~~~~gd~Y~~~~~~t~~~l~~~l~~~~~~~~~~fqs~~ 240 (333)
T PRK00035 162 YYDHPGYIEALAESIREALAKHGEDP-EPDRLLFSAHGLPQRYIDKGDPYQQQCEETARLLAEALGLPDEDYDLTYQSRF 240 (333)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCccc-CCcEEEEecCCCchHHhhcCCChHHHHHHHHHHHHHHhCCCCCCeEEEeeCCC
Confidence 99999999999999999998764322 4568999999999999999999999999999999999996 247999999999
Q ss_pred ccCCCCCccHHHHHHHHHHCCCCEEEEEccccccccchhhhhhhHHHHHHHhccccceeEEEecCCCCCCCcceEEecCC
Q psy5712 213 GPLPWLGPFTDDALKGYVKQGKKNFLLVPIAFVNEHIETLHEMDIEYCHDLGKEVSVFSMYLFTGPGSPSNISWSLIDRW 292 (386)
Q Consensus 213 G~~~w~~P~i~d~l~~L~~~G~~~IvvlPL~f~~~~~eT~~~~d~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~I~~~ 292 (386)
|+.+|++|+++++|++|.++|+++|+|+|++|++||+||++|+|+++ ++.+++.|+..+.+++| +
T Consensus 241 g~~~Wl~P~~~~~l~~l~~~g~k~V~v~P~~Fv~D~lEtl~ei~~e~-~~~~~~~G~~~~~~~~~--------------l 305 (333)
T PRK00035 241 GPEPWLEPYTDDTLEELAEKGVKKVVVVPPGFVSDHLETLEEIDIEY-REIAEEAGGEEFRRIPC--------------L 305 (333)
T ss_pred CCCccCCCCHHHHHHHHHHcCCCeEEEECCeeeccchhHHHHHHHHH-HHHHHHcCCceEEECCC--------------C
Confidence 99999999999999999999999999999999999999999999885 77888888877888888 9
Q ss_pred CCCHHHHHHHHHHHHHHHhcC
Q psy5712 293 STHPLLCKVFAERIQEELKQF 313 (386)
Q Consensus 293 ~d~p~fI~ala~~I~~~l~~~ 313 (386)
|++|.|+++|+++|++.+...
T Consensus 306 n~~~~~i~~l~~~v~~~~~~~ 326 (333)
T PRK00035 306 NDSPEFIEALADLVRENLQGW 326 (333)
T ss_pred CCCHHHHHHHHHHHHHHhcCC
Confidence 999999999999999987554
No 8
>KOG1321|consensus
Probab=100.00 E-value=1.3e-41 Score=316.85 Aligned_cols=198 Identities=39% Similarity=0.659 Sum_probs=164.7
Q ss_pred hhhccCCCcHHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHHHHHCCCCEEEEEccccccccchhhhh
Q psy5712 175 RAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLLVPIAFVNEHIETLHE 254 (386)
Q Consensus 175 ~~v~~Gd~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~L~~~G~~~IvvlPL~f~~~~~eT~~~ 254 (386)
+.|+.|.|........++.+.+.|...++-......++| |+|++|++++++++|+++|++|+|++|.|++++|++|.++
T Consensus 96 ~~IGGGSPir~wT~~Q~~~m~k~Ld~~~petaphk~YVg-fRY~~PlTEea~~qikkd~v~r~VafsqYPQyS~sTsGSS 174 (395)
T KOG1321|consen 96 REIGGGSPIRKWTEYQAEEMCKILDKKCPETAPHKPYVG-FRYAHPLTEEALEQIKKDGVTRAVAFSQYPQYSCSTSGSS 174 (395)
T ss_pred HhccCCCchhHHHHHHHHHHHHHHHhcCcccCCccceee-eeecCcccHHHHHHHHhcCceeEEeeccCCceeeecCccc
Confidence 445566665555555555555544332232333345678 7888999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhccccceeEEEecCCCCCCCcceEEecCCCCCHHHHHHHHHHHHHHHhcCCccccCceEEEEeecCCchhh
Q psy5712 255 MDIEYCHDLGKEVSVFSMYLFTGPGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRA 334 (386)
Q Consensus 255 ~d~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~I~~~~d~p~fI~ala~~I~~~l~~~~~~~~~~~~llfSaHslP~~~ 334 (386)
++. . ...+++.| ....+++.+|++|+.++++|+++|++|.+.|+.++.+.++++.++|||||+|+++
T Consensus 175 ln~-l-~r~~r~~~-----------~~~~~~wsiIdrW~t~~glIkafA~~I~keL~~F~~~~r~~VVIlFSAHslPms~ 241 (395)
T KOG1321|consen 175 LNE-L-WRQFREDG-----------YERDIKWSIIDRWPTREGLIKAFAENIEKELQTFPEPVRDDVVILFSAHSLPMSV 241 (395)
T ss_pred HHH-H-HHHHHhcC-----------cccCCceEeeccccccchHHHHHHHHHHHHHHhcCCcccccEEEEEecCCCcHHH
Confidence 852 1 12233333 2457889999999999999999999999999999998889999999999999999
Q ss_pred hccCCCCHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCchhhhhcC
Q psy5712 335 VNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKG 386 (386)
Q Consensus 335 i~~GDpY~~q~~~t~~~l~~~l~~~~~~~lafQSr~G~~~WL~P~t~d~l~~ 386 (386)
|++||||+.|+.+|+.+||++|+-.++|+|+||||+||.+||+|+|++++++
T Consensus 242 Vn~GDpY~~Ei~atv~~iMeeL~~~N~y~lawQSkVGP~pWL~p~Tde~i~~ 293 (395)
T KOG1321|consen 242 VNAGDPYPAEIAATVDLIMEELKYKNPYRLAWQSKVGPLPWLGPATDEVIEG 293 (395)
T ss_pred HhcCCCcHHHHHHHHHHHHHHhccCCcchhhhhcccCCccccccchHHHHHH
Confidence 9999999999999999999999977899999999999999999999999874
No 9
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=100.00 E-value=3.1e-40 Score=316.30 Aligned_cols=181 Identities=29% Similarity=0.520 Sum_probs=151.8
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHHHHHCCCCEEEEEccccccccchhhhhhhHHHH
Q psy5712 181 DPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLLVPIAFVNEHIETLHEMDIEYC 260 (386)
Q Consensus 181 d~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~L~~~G~~~IvvlPL~f~~~~~eT~~~~d~e~~ 260 (386)
.|-....++.+++|.++|+.. .+.+.+| |+|++|++++++++|.++|+++||++|||+++++++|.+.++ +..
T Consensus 69 sPL~~~T~~q~~~L~~~L~~~-----~~~V~~a-mry~~P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~-~~~ 141 (320)
T COG0276 69 SPLNVITRAQAAALEERLDLP-----DFKVYLA-MRYGPPFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVD-ELA 141 (320)
T ss_pred CccHHHHHHHHHHHHHHhCCC-----CccEEEe-ecCCCCcHHHHHHHHHHcCCCeEEEEECCcccccccHHHHHH-HHH
Confidence 344456666677788877622 2455667 888899999999999999999999999999999999887764 222
Q ss_pred HHHhccccceeEEEecCCCCCCCcceEEecCCCCCHHHHHHHHHHHHHHHhcCCccccCceEEEEeecCCchhhhccCCC
Q psy5712 261 HDLGKEVSVFSMYLFTGPGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDP 340 (386)
Q Consensus 261 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~I~~~~d~p~fI~ala~~I~~~l~~~~~~~~~~~~llfSaHslP~~~i~~GDp 340 (386)
+.+. +.+ ..+++++|++|+++|.||+||++.|++.+++++ +++++|||||||||++++++|||
T Consensus 142 ~al~-~~~-------------~~~~i~~I~~~~~~p~yI~a~a~~I~~~~~~~~---~~~~~llfSaHglP~~~~~~GDp 204 (320)
T COG0276 142 RALK-ELR-------------GQPKISTIPDYYDEPLYIEALADSIREKLAKHP---RDDDVLLFSAHGLPKRYIDEGDP 204 (320)
T ss_pred HHHH-hcC-------------CCCceEEecCccCChHHHHHHHHHHHHHHHhcC---CCCeEEEEecCCCchhhhhcCCc
Confidence 2222 111 235689999999999999999999999999987 25679999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhcC-CCCeEEEEeCCCCCCCCCCCchhhhhc
Q psy5712 341 YPSEVGATVQGVMQELNN-CNPYHLVWQSKVGPLPWLGPFTDDALK 385 (386)
Q Consensus 341 Y~~q~~~t~~~l~~~l~~-~~~~~lafQSr~G~~~WL~P~t~d~l~ 385 (386)
|++||++|+++|+++||+ .++|.++||||+|+++||+|+|+|+++
T Consensus 205 Y~~q~~~t~~li~e~lg~~~~~~~~~~QS~~G~~~WL~P~t~~~l~ 250 (320)
T COG0276 205 YPQQCQETTRLIAEALGLPEEEYDLTFQSRFGPEPWLQPYTDDLLE 250 (320)
T ss_pred hHHHHHHHHHHHHHHcCCCchheeEEeecCCCCCCCCCCCHHHHHH
Confidence 999999999999999995 579999999999999999999999986
No 10
>PRK12435 ferrochelatase; Provisional
Probab=100.00 E-value=4.9e-40 Score=318.60 Aligned_cols=206 Identities=23% Similarity=0.451 Sum_probs=162.4
Q ss_pred ceEEEEEecCcc---------hhhhccCCCcHHHHHHHHHHHHHHhcCCCCce--------------------eEeeeee
Q psy5712 162 DVIILFSAHSLP---------LRAVNRGDPYPSEVGATVQGVMQELNNCNPYH--------------------LVWQSKV 212 (386)
Q Consensus 162 ~~~ll~saHg~P---------~~~v~~Gd~y~~~~~~~~~~l~~~lg~~~~~~--------------------~~~qs~~ 212 (386)
+++||++++|.| ++++.+|.+.+.+..+.++..++++|+.++.. +.|.+.+
T Consensus 4 ~~avlll~~GgP~~~~~V~pfL~ni~~g~~~~~~~l~~~~~~Y~~iGG~SPL~~~T~~qa~~L~~~L~~~~~~~~~~V~~ 83 (311)
T PRK12435 4 KIGLLVMAYGTPYKEEDIERYYTHIRHGRKPSEEMLQDLKDRYEAIGGISPLAKITDEQAKALEKALNEVQDEVEFKLYL 83 (311)
T ss_pred cEEEEEEeCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhCCcChHHHHHHHHHHHHHHHHhhccCCCCceEEE
Confidence 468999999999 56677776554444444444444444322211 1366778
Q ss_pred ccCCCCCccHHHHHHHHHHCCCCEEEEEccccccccchhhhhhhHHHHHHHhccccceeEEEecCCCCCCCcceEEecCC
Q psy5712 213 GPLPWLGPFTDDALKGYVKQGKKNFLLVPIAFVNEHIETLHEMDIEYCHDLGKEVSVFSMYLFTGPGSPSNISWSLIDRW 292 (386)
Q Consensus 213 G~~~w~~P~i~d~l~~L~~~G~~~IvvlPL~f~~~~~eT~~~~d~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~I~~~ 292 (386)
| |+|++|+++|+|++|.++|+++|+++|||+++++++|.+-.+ ..++..++. ..+++++|++|
T Consensus 84 a-mry~~P~i~~~l~~l~~~g~~~iv~lpLyPqyS~~Tt~s~~~--~~~~~~~~~--------------~~~~~~~i~~~ 146 (311)
T PRK12435 84 G-LKHIEPFIEDAVEQMHNDGIEEAISIVLAPHYSTFSVKSYNK--RAKEEAEKL--------------GGPTITSIESW 146 (311)
T ss_pred E-ecCCCCCHHHHHHHHHHcCCCeEEEEECCCccccccHHHHHH--HHHHHhccc--------------CCCeEEEeCCc
Confidence 8 888899999999999999999999999999988888865332 122221111 12468889999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCccccCceEEEEeecCCchhhhccCCCCHHHHHHHHHHHHHHhcCCCCeEEEEeCCC-C
Q psy5712 293 STHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKV-G 371 (386)
Q Consensus 293 ~d~p~fI~ala~~I~~~l~~~~~~~~~~~~llfSaHslP~~~i~~GDpY~~q~~~t~~~l~~~l~~~~~~~lafQSr~-G 371 (386)
++||.||+|++++|++++++.+...+++++|||||||||++++++||||++||++|+++|+++|+. .+|.++||||+ |
T Consensus 147 ~~~p~yi~a~a~~I~~~l~~~~~~~~~~~~llfSaHslP~~~i~~GDpY~~q~~~t~~~v~~~l~~-~~~~l~yQSr~~g 225 (311)
T PRK12435 147 YDEPKFIQYWADQIKETFAQIPEEEREKAVLIVSAHSLPEKIIAAGDPYPDQLEETADLIAEQANV-EHYAIGWQSEGNT 225 (311)
T ss_pred cCChHHHHHHHHHHHHHHHHcCcccccceEEEEecCCCchhHhhCCCCHHHHHHHHHHHHHHHcCC-CCCeEeeecCCCC
Confidence 999999999999999999887644445679999999999999999999999999999999999987 47999999997 7
Q ss_pred CCCCCCCchhhhhc
Q psy5712 372 PLPWLGPFTDDALK 385 (386)
Q Consensus 372 ~~~WL~P~t~d~l~ 385 (386)
+.+||+|+|+|+|+
T Consensus 226 ~~~WL~P~t~d~l~ 239 (311)
T PRK12435 226 PDPWLGPDVQDLTR 239 (311)
T ss_pred CCCCCCCCHHHHHH
Confidence 99999999999985
No 11
>PLN02449 ferrochelatase
Probab=100.00 E-value=2.9e-38 Score=318.00 Aligned_cols=187 Identities=27% Similarity=0.486 Sum_probs=151.5
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHHHHHCCCCEEEEEccccccccchhhhhhhHHH
Q psy5712 180 GDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLLVPIAFVNEHIETLHEMDIEY 259 (386)
Q Consensus 180 Gd~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~L~~~G~~~IvvlPL~f~~~~~eT~~~~d~e~ 259 (386)
|.|-....++.+++|+++|... . ..+.+.+| |+|++|+++|+|++|+++|+++||++|||++++.++|.+.++.
T Consensus 155 gSPL~~iT~~Qa~~Lq~~L~~~-~--~~~~V~~a-MRY~~P~iedal~~l~~~G~~~iVvLPLYPQyS~sTtgSs~~~-- 228 (485)
T PLN02449 155 GSPLRKITDEQAEALAKALEAK-N--LPAKVYVG-MRYWHPFTEEAIDQIKADGITKLVVLPLYPQFSISTSGSSLRL-- 228 (485)
T ss_pred CCchHHHHHHHHHHHHHHHhcc-C--CCeEEEEh-hhcCCCCHHHHHHHHHhcCCCeEEEEECCcccccccHHHHHHH--
Confidence 3444455666677777777432 1 23567778 8888999999999999999999999999999999999887742
Q ss_pred HHHHhccccceeEEEecCCCCCCCcceEEecCCCCCHHHHHHHHHHHHHHHhcCCccccCceEEEEeecCCchhhh-ccC
Q psy5712 260 CHDLGKEVSVFSMYLFTGPGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAV-NRG 338 (386)
Q Consensus 260 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~I~~~~d~p~fI~ala~~I~~~l~~~~~~~~~~~~llfSaHslP~~~i-~~G 338 (386)
.++...+.. ....+++++|++|+++|.||+|++++|++.+++.+. +++++|||||||||++++ ++|
T Consensus 229 l~~~~~~~~-----------~~~~~~~~~I~~~~~~p~yI~A~a~~I~~~l~~~~~--~~~~~LlFSAHGlP~~~v~~~G 295 (485)
T PLN02449 229 LESIFREDE-----------YLVNMQHTVIPSWYQREGYVKAMADLIKKELAKFSD--PEEVHIFFSAHGVPVSYVEEAG 295 (485)
T ss_pred HHHHHhhcc-----------cccCCeeEEeccccCChHHHHHHHHHHHHHHHhccC--cCCcEEEEecCCChhhhhhhcC
Confidence 122221110 012356899999999999999999999999987643 345699999999999999 889
Q ss_pred CCCHHHHHHHHHHHHHHhcCC---CCeEEEEeCCCCCCCCCCCchhhhhc
Q psy5712 339 DPYPSEVGATVQGVMQELNNC---NPYHLVWQSKVGPLPWLGPFTDDALK 385 (386)
Q Consensus 339 DpY~~q~~~t~~~l~~~l~~~---~~~~lafQSr~G~~~WL~P~t~d~l~ 385 (386)
|||++||++|+++|+++|+.. .+|+++||||+||.+||+|+|+|+|+
T Consensus 296 DpY~~q~~~ta~lI~~~L~~~~~~~~~~layQSR~Gp~eWL~P~t~d~L~ 345 (485)
T PLN02449 296 DPYKAQMEECVDLIMEELKARGILNRHTLAYQSRVGPVEWLKPYTDETIV 345 (485)
T ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCHHHHHH
Confidence 999999999999999999863 57999999999999999999999985
No 12
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=100.00 E-value=3.1e-37 Score=300.02 Aligned_cols=184 Identities=29% Similarity=0.462 Sum_probs=137.6
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHHHHHCCCCEEEEEccccccccchhhhhhhHHH
Q psy5712 180 GDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLLVPIAFVNEHIETLHEMDIEY 259 (386)
Q Consensus 180 Gd~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~L~~~G~~~IvvlPL~f~~~~~eT~~~~d~e~ 259 (386)
|.|-.....+.+++|+++|+... ..|.+.+| |+|++|++++++++|.++|+++|+++|||++++.++|.+..+.
T Consensus 64 ~SPL~~~t~~qa~~l~~~L~~~~---~~~~V~~a-mry~~P~i~~~l~~l~~~g~~~ivvlPLyPqyS~~ttgs~~~~-- 137 (316)
T PF00762_consen 64 GSPLNEITRRQAEALQQRLDERG---VDVEVYYA-MRYGPPSIEDALEELKADGVDRIVVLPLYPQYSSSTTGSYLDE-- 137 (316)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHH----EEEEEEEE-ESSSSSBHHHHHHHHHHTT-SEEEEEESSSS--TTTHHHHHHH--
T ss_pred CCchHHHHHHHHHHHHHHHHhcC---CCeeEEEE-eccCCCCHHHHHHHHHHcCCCeEEEEeCCCchhHhhHHHHHHH--
Confidence 34444455556666777765321 34667778 8888999999999999999999999999999999999887752
Q ss_pred HHHHhccccceeEEEecCCCCCCCcceEEecCCCCCHHHHHHHHHHHHHHHhcCCccccCceEEEEeecCCchhhh-ccC
Q psy5712 260 CHDLGKEVSVFSMYLFTGPGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAV-NRG 338 (386)
Q Consensus 260 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~I~~~~d~p~fI~ala~~I~~~l~~~~~~~~~~~~llfSaHslP~~~i-~~G 338 (386)
..+...+. ...+++++|++|++||.||++++++|+++++..+. .+..+|||||||||++++ ++|
T Consensus 138 ~~~~~~~~-------------~~~~~~~~i~~~~~~p~yi~a~~~~i~~~l~~~~~--~~~~~llfSaHglP~~~~~~~G 202 (316)
T PF00762_consen 138 VERALKKS-------------RPNPKVRFIPSFYDHPAYIEALAERIREALERFPR--GEPDHLLFSAHGLPQRYVEDKG 202 (316)
T ss_dssp HHHHHHHT-------------HSSSEEEEE---TT-HHHHHHHHHHHHHHHTTS-H--CCCEEEEEEEE--BHHHHTCCT
T ss_pred HHHHHHhc-------------CCCCeEEEeCCccCCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEccCCCCccccccCC
Confidence 22222221 12456889999999999999999999999998751 123699999999999999 589
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCchhhhhc
Q psy5712 339 DPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALK 385 (386)
Q Consensus 339 DpY~~q~~~t~~~l~~~l~~~~~~~lafQSr~G~~~WL~P~t~d~l~ 385 (386)
|||.+||++|+++|+++++.. +|.++||||+|+.+||+|+|+|+|+
T Consensus 203 dpY~~~~~~t~~~i~~~l~~~-~~~~~fQS~~g~~~WL~P~~~~~l~ 248 (316)
T PF00762_consen 203 DPYPAQCEETARLIAERLGLP-EWRLAFQSRFGPGEWLGPSTEDVLE 248 (316)
T ss_dssp -SHHHHHHHHHHHHHHHTTTS-SEEEEEES-SSSS-BSSSBHHHHHH
T ss_pred CChHHHHHHHHHHHHHHcCCC-ceEEEEECCCCCCCCccccHHHHHH
Confidence 999999999999999999974 5999999999999999999999986
No 13
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=100.00 E-value=1.6e-35 Score=289.24 Aligned_cols=184 Identities=31% Similarity=0.580 Sum_probs=148.5
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHHHHHCCCCEEEEEccccccccchhhhhhhHHHH
Q psy5712 181 DPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLLVPIAFVNEHIETLHEMDIEYC 260 (386)
Q Consensus 181 d~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~L~~~G~~~IvvlPL~f~~~~~eT~~~~d~e~~ 260 (386)
.|-.....+.+++|+++|... ..|.+.+| |+|++|+++++|++|.++|+++|+++|||++++.++|.+..+. ..
T Consensus 70 SPl~~~t~~q~~~l~~~l~~~----~~~~V~~a-mry~~P~i~~~l~~l~~~G~~~iv~lPL~PqyS~~t~gs~~~~-~~ 143 (322)
T TIGR00109 70 SPLLQITEQQAHALEKRLPNE----IDFKVYIA-MRYGEPFTEEAVKELLKDGVERAVVLPLYPHFSSSTTGSSFNE-LA 143 (322)
T ss_pred CcHHHHHHHHHHHHHHHhccC----CCceEEEe-eccCCCCHHHHHHHHHhcCCCeEEEEeCCcccccccHHHHHHH-HH
Confidence 344455556666777776421 23556677 7888999999999999999999999999999988888876642 11
Q ss_pred HHHhccccceeEEEecCCCCCCCcceEEecCCCCCHHHHHHHHHHHHHHHhcCCccccCceEEEEeecCCchhhhccCCC
Q psy5712 261 HDLGKEVSVFSMYLFTGPGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDP 340 (386)
Q Consensus 261 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~I~~~~d~p~fI~ala~~I~~~l~~~~~~~~~~~~llfSaHslP~~~i~~GDp 340 (386)
+++. +.. . ..+++++|++|+++|.||+|++++|++.+++.+. .++++|||||||||++++++|||
T Consensus 144 ~~l~-~~~-----~-------~~~~~~~i~~~~~~p~yi~a~~~~I~~~l~~~~~--~~~~~llfSaHglP~~~~~~Gd~ 208 (322)
T TIGR00109 144 EALK-KLR-----S-------LRPTISVIESWYDNPKYIKALADSIKETLASFPE--PDNAVLLFSAHGLPQSYVDEGDP 208 (322)
T ss_pred HHHH-hcc-----c-------CCCeEEEeCccccCcHHHHHHHHHHHHHHHhcCC--cCCcEEEEeCCCCchhHhhCCCC
Confidence 2221 111 0 0146889999999999999999999999987643 23568999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCchhhhhc
Q psy5712 341 YPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALK 385 (386)
Q Consensus 341 Y~~q~~~t~~~l~~~l~~~~~~~lafQSr~G~~~WL~P~t~d~l~ 385 (386)
|.+||.+|+++|+++++...+|.++|||++||.+||+|+|+|+|+
T Consensus 209 Y~~~~~~ta~~l~~~l~~~~~~~~~fQS~~g~~~Wl~P~~~~~l~ 253 (322)
T TIGR00109 209 YPAECEATTRLIAEKLGFPNEYRLTWQSRVGPEPWLGPYTEELLE 253 (322)
T ss_pred hHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcCCCCHHHHHH
Confidence 999999999999999984368999999999999999999999985
No 14
>PRK00035 hemH ferrochelatase; Reviewed
Probab=100.00 E-value=3.3e-32 Score=267.72 Aligned_cols=186 Identities=25% Similarity=0.427 Sum_probs=147.6
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHHHHHCCCCEEEEEccccccccchhhhhhhHHH
Q psy5712 180 GDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLLVPIAFVNEHIETLHEMDIEY 259 (386)
Q Consensus 180 Gd~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~L~~~G~~~IvvlPL~f~~~~~eT~~~~d~e~ 259 (386)
|.|-.....+.+++|++.++.. ...|.+..| |+|++|+++++|++|.++|+++|+|+|||++++.+++.+..+ +
T Consensus 69 gSPl~~~t~~q~~~L~~~l~~~---~~~~~V~~a-m~y~~P~i~eal~~l~~~G~~~IivlPL~p~~s~~t~gs~~~-~- 142 (333)
T PRK00035 69 GSPLNVITRRQAEALQAELAAR---GPDLPVYLG-MRYWNPSIEEALEALKADGVDRIVVLPLYPQYSYSTTASYFE-D- 142 (333)
T ss_pred CChhHHHHHHHHHHHHHHHhcc---CCCceEEEe-ecCCCCCHHHHHHHHHhcCCCEEEEEECCCccccccHHHHHH-H-
Confidence 3344445566666777776421 112445567 788899999999999999999999999998887777776553 1
Q ss_pred HHHHhccccceeEEEecCCCCCCCcceEEecCCCCCHHHHHHHHHHHHHHHhcCCccccCceEEEEeecCCchhhhccCC
Q psy5712 260 CHDLGKEVSVFSMYLFTGPGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGD 339 (386)
Q Consensus 260 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~I~~~~d~p~fI~ala~~I~~~l~~~~~~~~~~~~llfSaHslP~~~i~~GD 339 (386)
..+..++.. ..++++++++|+++|.|+++++++|++.++..+..+ ++++|||||||+|.+.+++||
T Consensus 143 i~~~~~~~~-------------~~~~i~~i~~~~~~p~~i~~l~~~I~~~~~~~~~~~-~~~~llfs~HG~P~~~~~~gd 208 (333)
T PRK00035 143 LARALAKLR-------------LQPEIRFIRSYYDHPGYIEALAESIREALAKHGEDP-EPDRLLFSAHGLPQRYIDKGD 208 (333)
T ss_pred HHHHHHhcC-------------CCCcEEEeCCccCCHHHHHHHHHHHHHHHHhcCccc-CCcEEEEecCCCchHHhhcCC
Confidence 122222111 135688999999999999999999999997654322 356899999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhcC-CCCeEEEEeCCCCCCCCCCCchhhhhc
Q psy5712 340 PYPSEVGATVQGVMQELNN-CNPYHLVWQSKVGPLPWLGPFTDDALK 385 (386)
Q Consensus 340 pY~~q~~~t~~~l~~~l~~-~~~~~lafQSr~G~~~WL~P~t~d~l~ 385 (386)
||.+||++|+++|+++++. ..+|.+||||++|+.+||+|+|+|+|+
T Consensus 209 ~Y~~~~~~t~~~l~~~l~~~~~~~~~~fqs~~g~~~Wl~P~~~~~l~ 255 (333)
T PRK00035 209 PYQQQCEETARLLAEALGLPDEDYDLTYQSRFGPEPWLEPYTDDTLE 255 (333)
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCeEEEeeCCCCCCccCCCCHHHHHH
Confidence 9999999999999999985 468999999999999999999999985
No 15
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=99.96 E-value=7.2e-29 Score=212.82 Aligned_cols=132 Identities=42% Similarity=0.729 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHhCCcccCCceEEEEEecCcchhhhccCCCcHHHHHHHHHHHHHHhcCC-CCceeEeeeeeccCCCCCc
Q psy5712 142 KVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNC-NPYHLVWQSKVGPLPWLGP 220 (386)
Q Consensus 142 ~a~~~~I~~~l~~~~~~~~~~~~ll~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~~-~~~~~~~qs~~G~~~w~~P 220 (386)
++++++|+++++..+ ++...|||||||+|.+.+++||+|..+|.++++++++++|.. .+|.++|||++|+++|++|
T Consensus 1 ~a~~~~I~~~~~~~~---~~~~~llfsaHgiP~~~~~~gd~Y~~~~~~~~~~v~~~l~~~~~~~~~~fqS~~g~~~Wl~P 77 (135)
T cd00419 1 EALADHIREALAELP---REKDRLLFSAHGLPVRDIKKGDPYPDQCEETARLVAERLGLPFDEYELAYQSRFGPGEWLEP 77 (135)
T ss_pred ChHHHHHHHHHHhcC---CCCCEEEEEcCCCHHHHhhCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCCCCCCCC
Confidence 478999999998864 245689999999999999999999999999999999999842 4799999999999999999
Q ss_pred cHHHHHHHHHHCCCCEEEEEccccccccchhhhhhhHHHHHHHhccccceeEEEecC
Q psy5712 221 FTDDALKGYVKQGKKNFLLVPIAFVNEHIETLHEMDIEYCHDLGKEVSVFSMYLFTG 277 (386)
Q Consensus 221 ~i~d~l~~L~~~G~~~IvvlPL~f~~~~~eT~~~~d~e~~~~~~~~~g~~~~~~~~~ 277 (386)
+++++|+++.++|+++|+|+|++|.+||+||++|+|+++ ++.+++.|+..+.|++|
T Consensus 78 ~~~~~l~~l~~~G~~~i~v~p~gF~~D~~Etl~di~~e~-~~~~~~~G~~~~~rvp~ 133 (135)
T cd00419 78 STDDALEELAKEGVKNVVVVPIGFVSDHLETLYELDIEY-RELAEEAGGENYRRVPC 133 (135)
T ss_pred CHHHHHHHHHHcCCCeEEEECCccccccHHHHHHHHHHH-HHHHHHcCCceEEEcCC
Confidence 999999999999999999999999999999999999996 67888889778999888
No 16
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=99.87 E-value=3.6e-22 Score=171.32 Aligned_cols=83 Identities=42% Similarity=0.794 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhcCCccccCceEEEEeecCCchhhhccCCCCHHHHHHHHHHHHHHhcC-CCCeEEEEeCCCCCCCCCCC
Q psy5712 300 KVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNN-CNPYHLVWQSKVGPLPWLGP 378 (386)
Q Consensus 300 ~ala~~I~~~l~~~~~~~~~~~~llfSaHslP~~~i~~GDpY~~q~~~t~~~l~~~l~~-~~~~~lafQSr~G~~~WL~P 378 (386)
+++++.|.++++..+ +++..|||||||+|++.+++||||.+||.+|+++|+++++. ..+|.++||||+||.+||+|
T Consensus 1 ~a~~~~I~~~~~~~~---~~~~~llfsaHgiP~~~~~~gd~Y~~~~~~~~~~v~~~l~~~~~~~~~~fqS~~g~~~Wl~P 77 (135)
T cd00419 1 EALADHIREALAELP---REKDRLLFSAHGLPVRDIKKGDPYPDQCEETARLVAERLGLPFDEYELAYQSRFGPGEWLEP 77 (135)
T ss_pred ChHHHHHHHHHHhcC---CCCCEEEEEcCCCHHHHhhCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCCCCCCCC
Confidence 378999999998764 23558999999999999999999999999999999999983 36899999999999999999
Q ss_pred chhhhhc
Q psy5712 379 FTDDALK 385 (386)
Q Consensus 379 ~t~d~l~ 385 (386)
+|+|+|+
T Consensus 78 ~~~~~l~ 84 (135)
T cd00419 78 STDDALE 84 (135)
T ss_pred CHHHHHH
Confidence 9999985
No 17
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=99.86 E-value=3.8e-21 Score=169.82 Aligned_cols=151 Identities=21% Similarity=0.315 Sum_probs=107.3
Q ss_pred eEEEEEccCCCCChhHHHHHHHHhcCCCCCcCCchh--hhhh------ccHHHHHHhcccCCcccccccccccccCCCCC
Q psy5712 35 TAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPEA--WSLH------CQEKNARSTKEIPGNRRWVSDIEVDSAPGTAE 106 (386)
Q Consensus 35 ~aiLlvn~GsP~~~~~v~~fL~~~~~d~~vi~~p~~--~~l~------~~~~~~~~Y~~igg~~~~t~~~~~~~~~~g~~ 106 (386)
+||||+|||||++.+||++||.+||+|++||++|.+ ++|+ ++++++++|++|||+ ||..
T Consensus 1 ~~VLL~n~G~P~~~~~v~~yL~~~~~d~~vi~~p~~~~~~l~~~I~~~r~~k~~~~Y~~ig~~-------SPL~------ 67 (159)
T cd03411 1 TAVLLVNLGGPESLEDVRPFLKNFLSDRRVIELPRPLRPILAGIILPRRPPKVAKNYKKIGGG-------SPLN------ 67 (159)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHcCCCCcccCCHHHHHHHHHHhcccccHHHHHHHHHcCCC-------CccH------
Confidence 489999999999999999999999999999999863 3333 288999999999763 2210
Q ss_pred EEEEEEecCcccccCCCCCceEEEeccCCCChHHHHHHHHHHHHHHHhCCcccCCceEEEEEecCcchhhhccCCCcHHH
Q psy5712 107 RVVVIFSQVSSVKLGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSE 186 (386)
Q Consensus 107 ~~iv~~p~y~~~~~~~~~~~~~~~i~~~~~~p~~i~a~~~~I~~~l~~~~~~~~~~~~ll~saHg~P~~~v~~Gd~y~~~ 186 (386)
..
T Consensus 68 ------------------------------------------------------------------------------~~ 69 (159)
T cd03411 68 ------------------------------------------------------------------------------EI 69 (159)
T ss_pred ------------------------------------------------------------------------------HH
Confidence 00
Q ss_pred HHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHHHHHCCCCEEEEEccccccccchhhhhhhHHHHHHHhcc
Q psy5712 187 VGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLLVPIAFVNEHIETLHEMDIEYCHDLGKE 266 (386)
Q Consensus 187 ~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~L~~~G~~~IvvlPL~f~~~~~eT~~~~d~e~~~~~~~~ 266 (386)
..+.+++++++|+... ..+.+.+| |+|++|+++|+|++|.++|+++|+++|||+++++++|.+..+. +.+...+
T Consensus 70 t~~q~~~l~~~L~~~~---~~~~v~~a-mry~~P~i~~~l~~l~~~g~~~iivlPl~P~~S~~Tt~s~~~~--~~~~~~~ 143 (159)
T cd03411 70 TRAQAEALEKALDERG---IDVKVYLA-MRYGPPSIEEALEELKADGVDRIVVLPLYPQYSASTTGSYLDE--VERALKK 143 (159)
T ss_pred HHHHHHHHHHHHhccC---CCcEEEeh-HhcCCCCHHHHHHHHHHcCCCEEEEEECCcccccccHHHHHHH--HHHHHHh
Confidence 1122333333332110 11345567 8888999999999999999999999999999998988887642 2222211
Q ss_pred ccceeEEEecCCCCCCCcceEEecCCCCC
Q psy5712 267 VSVFSMYLFTGPGSPSNISWSLIDRWSTH 295 (386)
Q Consensus 267 ~g~~~~~~~~~~~~~~~~~~~~I~~~~d~ 295 (386)
. ...+++++|++|++|
T Consensus 144 ~-------------~~~~~~~~i~~~~~~ 159 (159)
T cd03411 144 L-------------RPAPELRVIRSFYDH 159 (159)
T ss_pred c-------------CCCCcEEEeCccccC
Confidence 1 123458889999875
No 18
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=99.42 E-value=1.2e-12 Score=123.92 Aligned_cols=233 Identities=17% Similarity=0.210 Sum_probs=133.9
Q ss_pred eEEEEEccCCCC------ChhHHHHHHHHhcCCCCCcCCchhhhhhccHHHHHHhcccCCccccc--ccccccccCCCCC
Q psy5712 35 TAILMLNMGGPT------HTDQVSEYLHRIMTDRDMIQLPEAWSLHCQEKNARSTKEIPGNRRWV--SDIEVDSAPGTAE 106 (386)
Q Consensus 35 ~aiLlvn~GsP~------~~~~v~~fL~~~~~d~~vi~~p~~~~l~~~~~~~~~Y~~igg~~~~t--~~~~~~~~~~g~~ 106 (386)
+||||++|||-. +++.+++=+++-|.|.+|..... +..+.++-++-+|....+ +.|+ .+...|++
T Consensus 1 KAIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfT------S~~I~~kl~~~~g~~i~~~~eaL~-~L~~~G~~ 73 (262)
T PF06180_consen 1 KAILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFT------SRIIRKKLAERDGIKIDSPEEALA-KLADEGYT 73 (262)
T ss_dssp EEEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-------HHHHHHHHHCHT-----HHHHHH-HHHHCT--
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEch------HHHHHHHHHhcCCCCcCCHHHHHH-HHHHCCCC
Confidence 599999999966 34788888999999988765544 555566666665531122 3443 34567999
Q ss_pred EEEEEEecC--ccc---------ccCCCCCceEEEeccCCC------ChHHHHHHHHHHHHHHHhCCcccCCceEEEEEe
Q psy5712 107 RVVVIFSQV--SSV---------KLGSPSNISWSLIDRWST------HPLLCKVFAERIQEELKQFPAEVQKDVIILFSA 169 (386)
Q Consensus 107 ~~iv~~p~y--~~~---------~~~~~~~~~~~~i~~~~~------~p~~i~a~~~~I~~~l~~~~~~~~~~~~ll~sa 169 (386)
+ |+|.|++ |+. ......-.++++.++.=. ++.=++.+++.|.+.+ +. .+++..++|+.
T Consensus 74 ~-V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~~---~~-~~~~~a~vlmG 148 (262)
T PF06180_consen 74 E-VVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALAEEF---PK-KRKDEAVVLMG 148 (262)
T ss_dssp E-EEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHHHCCS----T-T-TTEEEEEEE
T ss_pred E-EEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHHHHhc---cc-cCCCCEEEEEe
Confidence 9 9999974 632 111111235666666544 4555556665544322 21 12466899999
Q ss_pred cCcchhhhccCCCcHHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHHHHHCCCCEEEEEcccc-cccc
Q psy5712 170 HSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLLVPIAF-VNEH 248 (386)
Q Consensus 170 Hg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~L~~~G~~~IvvlPL~f-~~~~ 248 (386)
||+|.. ....+..++.+.++.+.. ++ .+|..+ ..|.+++++++|.+.|+++|.++|+.. +++|
T Consensus 149 HGt~h~--------an~~Y~~l~~~l~~~~~~-~v------~vgtvE-G~P~~~~vi~~L~~~g~k~V~L~PlMlVAGdH 212 (262)
T PF06180_consen 149 HGTPHP--------ANAAYSALQAMLKKHGYP-NV------FVGTVE-GYPSLEDVIARLKKKGIKKVHLIPLMLVAGDH 212 (262)
T ss_dssp ---SCH--------HHHHHHHHHHHHHCCT-T-TE------EEEETT-SSSBHHHHHHHHHHHT-SEEEEEEESSS--HH
T ss_pred CCCCCC--------ccHHHHHHHHHHHhCCCC-eE------EEEEeC-CCCCHHHHHHHHHhcCCCeEEEEecccccchh
Confidence 999942 234556666666665543 32 345455 489999999999999999999999774 4555
Q ss_pred chhhhhh---hHHHHHHHhccccceeEEEecCCCCCCCcceEEecCCCCCHHHHHHHHHHHHHHHh
Q psy5712 249 IETLHEM---DIEYCHDLGKEVSVFSMYLFTGPGSPSNISWSLIDRWSTHPLLCKVFAERIQEELK 311 (386)
Q Consensus 249 ~eT~~~~---d~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~I~~~~d~p~fI~ala~~I~~~l~ 311 (386)
... |+ +...++...++.|++-- .+++.+++.|.+.+.+.+.++++++
T Consensus 213 a~n--DmaGde~dSWks~L~~~G~~v~--------------~~l~GLGE~~~i~~ifi~hl~~ai~ 262 (262)
T PF06180_consen 213 AKN--DMAGDEEDSWKSRLEAAGFEVT--------------CVLKGLGEYPAIQQIFIEHLKEAIE 262 (262)
T ss_dssp HHC--CCCSSSTTSHHHHHHHTT-EEE--------------E----GGGSHHHHHHHHHHHHHHH-
T ss_pred hhh--hhcCCCcchHHHHHHHCCCEEE--------------EEeccCcCCHHHHHHHHHHHHHHhC
Confidence 542 11 11235666677776421 2456699999999999999999874
No 19
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=99.33 E-value=9.3e-11 Score=105.32 Aligned_cols=228 Identities=17% Similarity=0.207 Sum_probs=155.3
Q ss_pred CceEEEEEccCCCC------ChhHHHHHHHHhcCCCCCcCCchhhhhhccHHHHHHhcccCCccccc--ccccccccCCC
Q psy5712 33 PKTAILMLNMGGPT------HTDQVSEYLHRIMTDRDMIQLPEAWSLHCQEKNARSTKEIPGNRRWV--SDIEVDSAPGT 104 (386)
Q Consensus 33 ~k~aiLlvn~GsP~------~~~~v~~fL~~~~~d~~vi~~p~~~~l~~~~~~~~~Y~~igg~~~~t--~~~~~~~~~~g 104 (386)
+|+|||+|+|||-. +++.+++=+..-|.|.+|.+... +.++.++.+...|.-..| .+|+ .++..|
T Consensus 1 mKKailiVsFGTty~dtre~tIda~e~~va~efpDydvfrAfT------S~kIIkkLK~rdgi~~dTP~~aL~-klk~~g 73 (265)
T COG4822 1 MKKAILIVSFGTTYNDTRELTIDAIEEKVADEFPDYDVFRAFT------SRKIIKKLKERDGIDFDTPIQALN-KLKDQG 73 (265)
T ss_pred CCceEEEEEcCCccchhHHhhHHHHHHHHHHhCccHHHHHHHh------HHHHHHHHHhhcCcccCCHHHHHH-HHHHcc
Confidence 47899999999988 67899999999999999876554 667778888776653334 3444 356789
Q ss_pred CCEEEEEEecC--ccc----------------ccCCCCCceEEEeccCCCChHHHHHHHHHHHHHHHhCCcccCCceEEE
Q psy5712 105 AERVVVIFSQV--SSV----------------KLGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIIL 166 (386)
Q Consensus 105 ~~~~iv~~p~y--~~~----------------~~~~~~~~~~~~i~~~~~~p~~i~a~~~~I~~~l~~~~~~~~~~~~ll 166 (386)
.++ |++.|++ |+. ++..-+.+-+.+. .+...++++ |+..+..+ +.+-.++
T Consensus 74 y~e-viiQ~lhiIpG~EyEklvr~V~~~~~dF~~lkig~PlLy~k---~DYe~~v~a----ik~~~ppl----~k~e~~v 141 (265)
T COG4822 74 YEE-VIIQPLHIIPGIEYEKLVREVNKYSNDFKRLKIGRPLLYYK---NDYEICVEA----IKDQIPPL----NKDEILV 141 (265)
T ss_pred chh-eeeeeeeecCchHHHHHHHHHHHHhhhhheeecCCceeech---hhHHHHHHH----HHHhcCCc----CcCeEEE
Confidence 999 8888875 532 1111112222222 223333443 33333222 2344899
Q ss_pred EEecCcchhhhccCCCcHHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHHHHHCCCCEEEEEccccc-
Q psy5712 167 FSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLLVPIAFV- 245 (386)
Q Consensus 167 ~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~L~~~G~~~IvvlPL~f~- 245 (386)
||-||+-. ....+++..+.+..+-|.. ++.++- .+ .-|.++.+|+.|.+.|++++-++|+.++
T Consensus 142 lmgHGt~h--------~s~~~YacLd~~~~~~~f~-~v~v~~------ve-~yP~~d~vi~~l~~~~~~~v~L~PlMlvA 205 (265)
T COG4822 142 LMGHGTDH--------HSNAAYACLDHVLDEYGFD-NVFVAA------VE-GYPLVDTVIEYLRKNGIKEVHLIPLMLVA 205 (265)
T ss_pred EEecCCCc--------cHHHHHHHHHHHHHhcCCC-ceEEEE------ec-CCCcHHHHHHHHHHcCCceEEEeeeEEee
Confidence 99999963 3456777788888777764 444432 12 3799999999999999999999998764
Q ss_pred cccchhhhhhhHH-----HHHHHhccccceeEEEecCCCCCCCcceEEecCCCCCHHHHHHHHHHHHHHHhcC
Q psy5712 246 NEHIETLHEMDIE-----YCHDLGKEVSVFSMYLFTGPGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQF 313 (386)
Q Consensus 246 ~~~~eT~~~~d~e-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~I~~~~d~p~fI~ala~~I~~~l~~~ 313 (386)
++|.. .|++ .++..+++.|++.- ..+..+++.|.|.+.+.+.|+.+++..
T Consensus 206 G~Ha~----nDMasddedswk~il~~~G~~v~--------------~~l~GLGE~~~iq~ifi~Hik~aie~~ 260 (265)
T COG4822 206 GDHAK----NDMASDDEDSWKNILEKNGFKVE--------------VYLHGLGENPAIQAIFIDHIKDAIERD 260 (265)
T ss_pred chhhh----hhhcccchHHHHHHHHhCCceeE--------------EEeecCCCcHHHHHHHHHHHHHHHhhh
Confidence 45543 2332 36777888887532 245569999999999999999998753
No 20
>PRK02395 hypothetical protein; Provisional
Probab=99.31 E-value=3.3e-10 Score=108.96 Aligned_cols=161 Identities=16% Similarity=0.131 Sum_probs=108.0
Q ss_pred CceEEEeccCCCChHHHHHHHHHHHHHHHhCCcccCCceEEEEEecCcchhhhccCCCcHHHHHHHHHHHHHHhcCCCCc
Q psy5712 125 NISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPY 204 (386)
Q Consensus 125 ~~~~~~i~~~~~~p~~i~a~~~~I~~~l~~~~~~~~~~~~ll~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~~~~~ 204 (386)
++++.+.++++.+|.+++++.++++++....+ .+++.++|+++||++... .....+++.++.+.++.+.. .+
T Consensus 100 ~~~i~~~~plG~~p~l~~~l~~ri~e~~~~~~--~~~~~alvlvgHGS~~~~-----~a~~~~~~~a~~l~~~~~~~-~V 171 (279)
T PRK02395 100 GKTVHYTGPVGTHPAMADVIAARARSVTGDPD--VGEDTALAVVGHGTERNE-----NSAKAIYYHADRLRERGRFA-EV 171 (279)
T ss_pred CceEEeCCCCCCChHHHHHHHHHHHHhhcCCC--CCcCceEEEEecCCCCch-----hHHHHHHHHHHHHHhhCCCC-eE
Confidence 67899999999999999999999988765421 124568999999997210 01345666677776655543 56
Q ss_pred eeEeeeeeccCCCCCccHHHHHHHHHHCCCCEEEEEccc-cccccchhhhhhhHHHHHHHhcc--ccceeEEEecCCCCC
Q psy5712 205 HLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLLVPIA-FVNEHIETLHEMDIEYCHDLGKE--VSVFSMYLFTGPGSP 281 (386)
Q Consensus 205 ~~~~qs~~G~~~w~~P~i~d~l~~L~~~G~~~IvvlPL~-f~~~~~eT~~~~d~e~~~~~~~~--~g~~~~~~~~~~~~~ 281 (386)
.++| +. ..|+++++++++. .++|+|+|++ |.+.|+.. |+....+..++ .|.. + +. ..
T Consensus 172 ~~~f------le-~~P~l~~~l~~l~---~~~V~vvP~fL~~G~H~~~----DIp~~~~~~~~~~~g~~-~---~~--~~ 231 (279)
T PRK02395 172 EALF------LD-EEPEVDDWPDLFE---ADDVVVVPLFIADGFHTQE----DIPEDMGLTDDYRTGYD-V---PT--AV 231 (279)
T ss_pred EEEe------cc-CCCCHHHHHHHhC---CCeEEEEeeecccCcchHh----HHHHHHHHhhccccccC-C---Cc--cc
Confidence 6676 44 4899999998874 4899999976 55555432 22211111111 1110 0 00 00
Q ss_pred CCcceEEecCCCCCHHHHHHHHHHHHHHHhcC
Q psy5712 282 SNISWSLIDRWSTHPLLCKVFAERIQEELKQF 313 (386)
Q Consensus 282 ~~~~~~~I~~~~d~p~fI~ala~~I~~~l~~~ 313 (386)
...++.+.++++.||.+.+.+++++++.+...
T Consensus 232 ~~~~i~~~~~LG~~p~l~~i~~~R~~ea~~~~ 263 (279)
T PRK02395 232 DGHRIWYAGAVGTEPLMADVILERAADAGADV 263 (279)
T ss_pred CCeeEEEecCCCCCHHHHHHHHHHHHHhhcCc
Confidence 13457778889999999999999999987654
No 21
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=99.07 E-value=1.2e-09 Score=88.48 Aligned_cols=82 Identities=29% Similarity=0.552 Sum_probs=67.3
Q ss_pred EEEEEecCcchhhhccCCCcHHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHHHHHCCCCEEEEEccc
Q psy5712 164 IILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLLVPIA 243 (386)
Q Consensus 164 ~ll~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~L~~~G~~~IvvlPL~ 243 (386)
+|||++||+|.. +++...+.+.++.+.++++.. ++.++|+ .+..|++++++++|.++|+++|+++|++
T Consensus 1 ~lllv~HGs~~~-----s~~~~~~~~~~~~l~~~~~~~-~v~~a~~------~~~~P~i~~~l~~l~~~g~~~vvvvPl~ 68 (101)
T cd03409 1 GLLVVGHGSPYK-----DPYKKDIEAQAHNLAESLPDF-PYYVGFQ------SGLGPDTEEAIRELAEEGYQRVVIVPLA 68 (101)
T ss_pred CEEEEECCCCCC-----ccHHHHHHHHHHHHHHHCCCC-CEEEEEE------CCCCCCHHHHHHHHHHcCCCeEEEEeCc
Confidence 489999999943 467788888999998887543 5667774 4469999999999999999999999999
Q ss_pred cccccchhhhhhhHH
Q psy5712 244 FVNEHIETLHEMDIE 258 (386)
Q Consensus 244 f~~~~~eT~~~~d~e 258 (386)
++ ++.++.+++..+
T Consensus 69 ~~-~g~h~~~di~~~ 82 (101)
T cd03409 69 PV-SGDEVFYDIDSE 82 (101)
T ss_pred cc-cChhhHHHHHHH
Confidence 88 888888777544
No 22
>PLN02757 sirohydrochlorine ferrochelatase
Probab=99.03 E-value=6.1e-09 Score=91.37 Aligned_cols=122 Identities=17% Similarity=0.184 Sum_probs=87.2
Q ss_pred CceEEEEEecCcchhhhccCCCcHHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHHHHHCCCCEEEEE
Q psy5712 161 KDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLLV 240 (386)
Q Consensus 161 ~~~~ll~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~L~~~G~~~Ivvl 240 (386)
.+.++|+.+||++... ...++.+.++.+.++.+.. .+.++| ++..+|+++++|+++.+.|+++|+|+
T Consensus 12 ~~~~lllvgHGSrd~~------a~~~~~~la~~l~~~~~~~-~V~~aF------le~~~Psl~eal~~l~~~g~~~vvVv 78 (154)
T PLN02757 12 DKDGVVIVDHGSRRKE------SNLMLEEFVAMYKQKTGHP-IVEPAH------MELAEPSIKDAFGRCVEQGASRVIVS 78 (154)
T ss_pred CCcEEEEEeCCCCCHH------HHHHHHHHHHHHHhhCCCC-cEEEEE------EecCCCCHHHHHHHHHHCCCCEEEEE
Confidence 3558999999998322 2456777777777766543 466777 45569999999999999999999999
Q ss_pred ccc-cccccchhhhhhhHHH-HHHHhccccceeEEEecCCCCCCCcceEEecCCCCCHHHHHHHHHHHHHHHhcC
Q psy5712 241 PIA-FVNEHIETLHEMDIEY-CHDLGKEVSVFSMYLFTGPGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQF 313 (386)
Q Consensus 241 PL~-f~~~~~eT~~~~d~e~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~I~~~~d~p~fI~ala~~I~~~l~~~ 313 (386)
|++ |.+.|+. . |+.. ..+..++. +.+++.+.+++..||.+++++.+++++++...
T Consensus 79 P~FL~~G~H~~--~--DIp~~v~~~~~~~--------------p~~~i~~~~pLG~~p~l~~ll~~Ri~eal~~~ 135 (154)
T PLN02757 79 PFFLSPGRHWQ--E--DIPALTAEAAKEH--------------PGVKYLVTAPIGLHELMVDVVNDRIKYCLSHV 135 (154)
T ss_pred EhhhcCCcchH--h--HHHHHHHHHHHHC--------------CCcEEEECCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 977 5555542 2 3221 12222221 23456667779999999999999999998653
No 23
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=98.95 E-value=9.6e-09 Score=86.93 Aligned_cols=123 Identities=15% Similarity=0.205 Sum_probs=80.2
Q ss_pred eEEEEEecCcchhhhccCCCcHHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHHHHHCCCCEEEEEcc
Q psy5712 163 VIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLLVPI 242 (386)
Q Consensus 163 ~~ll~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~L~~~G~~~IvvlPL 242 (386)
+++|+.+||++... ..+.+.+.++.+.++.+. ++..+| ++..+|+++++++++.++|+++|+|+|+
T Consensus 1 ~~lllvgHGSR~~~------~~~~~~~la~~l~~~~~~--~v~~af------le~~~P~l~~~l~~l~~~G~~~ivVvPl 66 (125)
T cd03415 1 TAIIIITHGSRRNT------FNEDMEEWAAYLERKLGV--PVYLTY------NEYAEPNWRDLLNELLSEGYGHIIIALA 66 (125)
T ss_pred CEEEEEecCCCChH------HHHHHHHHHHHHHhccCC--ceEEEE------eecCCCCHHHHHHHHHHCCCCEEEEehh
Confidence 36899999998321 234555666666654443 466676 6777999999999999999999999997
Q ss_pred c-cccccchhhhhhhHHHHHHHhccccceeEEEecCCCCCCCcceEEecCCCCCHHHHHHHHHHHHH
Q psy5712 243 A-FVNEHIETLHEMDIEYCHDLGKEVSVFSMYLFTGPGSPSNISWSLIDRWSTHPLLCKVFAERIQE 308 (386)
Q Consensus 243 ~-f~~~~~eT~~~~d~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~I~~~~d~p~fI~ala~~I~~ 308 (386)
+ +.+.|+. . |+. ..+.+..+ ..+.. .......+++.+.+++++||.+.+++++++++
T Consensus 67 FL~~G~Hv~--~--DiP--~~l~~~~~-~~~~~--~~~~~~~~~i~~~~pLG~~p~l~~~l~~r~~~ 124 (125)
T cd03415 67 FLGRGNHVA--R--DIM--GELGVSRF-YKWVM--SKYGGKEILVYVTEPLADSPLVKLALFYRVKR 124 (125)
T ss_pred hccCCcchH--H--HHH--HHHHhhcc-cchhh--hccCCCCceEEEeCCCCCCHHHHHHHHHHHHh
Confidence 7 4444443 3 332 12221000 00000 00011235688889999999999999999876
No 24
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=98.93 E-value=9.3e-09 Score=87.13 Aligned_cols=121 Identities=14% Similarity=0.185 Sum_probs=78.6
Q ss_pred EEEEEecCcchhhhccCCCcHHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHHHHHCCCCEEEEEccc
Q psy5712 164 IILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLLVPIA 243 (386)
Q Consensus 164 ~ll~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~L~~~G~~~IvvlPL~ 243 (386)
++|+.+||+.... ......+.++.+.++.+.. ++.++| +++..|++++++++|.++|+++|+|+|++
T Consensus 3 ~lvlv~hGS~~~~------~~~~~~~~~~~l~~~~~~~-~v~~af------le~~~P~l~~~l~~l~~~g~~~v~vvPlf 69 (126)
T PRK00923 3 GLLLVGHGSRLPY------NKEVVTKIAEKIKEKHPFY-IVEVGF------MEFNEPTIPEALKKLIGTGADKIIVVPVF 69 (126)
T ss_pred EEEEEeCCCCChH------HHHHHHHHHHHHHHhCCCC-eEEEEE------EEcCCCCHHHHHHHHHHcCCCEEEEEchh
Confidence 7899999997321 2234555555666554432 466666 55668999999999999999999999987
Q ss_pred -cccccchhhhhhhHHHHHHHhccccceeEE-EecCCCCCCCcceEEecCCCCCHHHHHHHHHHHHH
Q psy5712 244 -FVNEHIETLHEMDIEYCHDLGKEVSVFSMY-LFTGPGSPSNISWSLIDRWSTHPLLCKVFAERIQE 308 (386)
Q Consensus 244 -f~~~~~eT~~~~d~e~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~I~~~~d~p~fI~ala~~I~~ 308 (386)
|.+.|... |+........ .+. +... ....+++.+.+++++||.+++.+.+++++
T Consensus 70 l~~G~h~~~----dip~~~~~~~-----~~~~~~~~--~~~~~~i~~~~~lG~~p~l~~~~~~r~~e 125 (126)
T PRK00923 70 LAHGVHTKR----DIPRILGLDE-----GEKEEIEE--DGKDVEIVYAEPLGADERIADIVLKRANE 125 (126)
T ss_pred hccCccccc----ccchhhhccc-----ccccchhh--cCCCeEEEEcCCCCCCHHHHHHHHHHHhh
Confidence 45555432 2221111110 000 0000 12345677888999999999999999876
No 25
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=98.88 E-value=3.7e-08 Score=82.18 Aligned_cols=114 Identities=16% Similarity=0.260 Sum_probs=76.6
Q ss_pred EEEEEecCcchhhhccCCCcHHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHHHHHCCCCEEEEEccc
Q psy5712 164 IILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLLVPIA 243 (386)
Q Consensus 164 ~ll~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~L~~~G~~~IvvlPL~ 243 (386)
++|+.+||++... ....+.+.++.+.++++.. ++..+| ++-..|+++++++++.++|+++|+|+|++
T Consensus 2 a~llv~HGS~~~~------~~~~~~~l~~~l~~~~~~~-~v~~af------le~~~P~~~~~l~~l~~~g~~~i~vvP~f 68 (117)
T cd03414 2 AVVLVGRGSSDPD------ANADVAKIARLLEEGTGFA-RVETAF------AAATRPSLPEALERLRALGARRVVVLPYL 68 (117)
T ss_pred EEEEEcCCCCCHH------HHHHHHHHHHHHHHhcCCC-eEEEEE------ecCCCCCHHHHHHHHHHcCCCEEEEEech
Confidence 6899999997311 2345555666666665532 566676 34448999999999999999999999987
Q ss_pred -cccccchhhhhhhHHHHHHHhccccceeEEEecCCCCCCCcceEEecCCCCCHHHHHHHHHHHHHH
Q psy5712 244 -FVNEHIETLHEMDIEYCHDLGKEVSVFSMYLFTGPGSPSNISWSLIDRWSTHPLLCKVFAERIQEE 309 (386)
Q Consensus 244 -f~~~~~eT~~~~d~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~I~~~~d~p~fI~ala~~I~~~ 309 (386)
|.+.+.+. +. +...+...+ ...++.+.++++.+|.+++++.+++++.
T Consensus 69 L~~G~h~~~---i~-~~~~~~~~~---------------~~~~i~~~~pLG~~~~l~~~l~~r~~~~ 116 (117)
T cd03414 69 LFTGVLMDR---IE-EQVAELAAE---------------PGIEFVLAPPLGPHPELAEALLERVREA 116 (117)
T ss_pred hcCCchHHH---HH-HHHHHHHhC---------------CCceEEECCCCCCCHHHHHHHHHHHHhh
Confidence 44544432 21 111111111 1234566677999999999999999875
No 26
>PRK02395 hypothetical protein; Provisional
Probab=98.67 E-value=1.4e-06 Score=83.95 Aligned_cols=182 Identities=13% Similarity=0.057 Sum_probs=111.8
Q ss_pred EEEEEecCcchhhhccCCC-cHHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHHHHHCCCCEEEEEcc
Q psy5712 164 IILFSAHSLPLRAVNRGDP-YPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLLVPI 242 (386)
Q Consensus 164 ~ll~saHg~P~~~v~~Gd~-y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~L~~~G~~~IvvlPL 242 (386)
+||+.+||++. ++ ..+.+++.++.+.++.+.. .+..+| ++ .+|++.++++++. .++|+|+|+
T Consensus 3 ~lllvgHGSrr------~~~~~~~~~~la~~l~~~~~~~-~v~~~f------le-~~P~l~~~l~~l~---~~~ivVvPl 65 (279)
T PRK02395 3 ALVLVGHGSHL------NPDSALPTYAHAETIRARGLFD-EVREGF------WK-EEPSLRQVLRTVE---SDEVYVVPL 65 (279)
T ss_pred eEEEEeCCCCC------CcchHHHHHHHHHHHHhcCCCC-eEEEee------cc-CCCCHHHHHHhcC---cCcEEEEee
Confidence 68999999962 22 3456666777777655443 566676 67 7999999999985 589999998
Q ss_pred cc-ccccchhhhhhhHHHHHHHhccccceeEEEecCCCCCCCcceEEecCCCCCHHHHHHHHHHHHHHHhcCCccccCce
Q psy5712 243 AF-VNEHIETLHEMDIEYCHDLGKEVSVFSMYLFTGPGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDV 321 (386)
Q Consensus 243 ~f-~~~~~eT~~~~d~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~I~~~~d~p~fI~ala~~I~~~l~~~~~~~~~~~ 321 (386)
++ .+.|++ . |+.. ++...-.. ...+.+........++.+.++++.+|.+++++.+++++....... +.+.
T Consensus 66 fL~~G~Hv~--~--DIP~--~l~~~~~~-~~~~~~~~~~~~~~~i~~~~plG~~p~l~~~l~~ri~e~~~~~~~--~~~~ 136 (279)
T PRK02395 66 FISEGYFTE--Q--VIPR--ELGLGHDG-PVADRGTLRALDGKTVHYTGPVGTHPAMADVIAARARSVTGDPDV--GEDT 136 (279)
T ss_pred Eeccccchh--h--hhHH--HhcCCcCC-ccccccccccCCCceEEeCCCCCCChHHHHHHHHHHHHhhcCCCC--CcCc
Confidence 74 344433 2 3331 22210000 000000000011456788888999999999999999988754321 2355
Q ss_pred EEEEeecCCchhhhccCCCCHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCchhhhh
Q psy5712 322 IILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDAL 384 (386)
Q Consensus 322 ~llfSaHslP~~~i~~GDpY~~q~~~t~~~l~~~l~~~~~~~lafQSr~G~~~WL~P~t~d~l 384 (386)
.||+-+||-+..-- -...++..++.+.++.+. ....++|-. + +|+.++++
T Consensus 137 alvlvgHGS~~~~~-----a~~~~~~~a~~l~~~~~~-~~V~~~fle--~-----~P~l~~~l 186 (279)
T PRK02395 137 ALAVVGHGTERNEN-----SAKAIYYHADRLRERGRF-AEVEALFLD--E-----EPEVDDWP 186 (279)
T ss_pred eEEEEecCCCCchh-----HHHHHHHHHHHHHhhCCC-CeEEEEecc--C-----CCCHHHHH
Confidence 79999999852110 123445556666554432 467888874 1 47777765
No 27
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=98.63 E-value=3.1e-07 Score=90.01 Aligned_cols=130 Identities=18% Similarity=0.253 Sum_probs=86.9
Q ss_pred ceEEEEEecCcchhhhccCCCcHHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHHHHHCCCCEEEEEc
Q psy5712 162 DVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLLVP 241 (386)
Q Consensus 162 ~~~ll~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~L~~~G~~~IvvlP 241 (386)
..++|+.+||+.... ..+.+.+.++.+.++.+. ++..+| ++..+|++++++++|.++|+++|+|+|
T Consensus 6 ~~aiLLvgHGSRdp~------~~~~~~~La~~l~~~~~~--~V~~aF------LE~~ePsl~eal~~l~~~G~~~IvVvP 71 (335)
T PRK05782 6 NTAIILIGHGSRRET------FNSDMEGMANYLKEKLGV--PIYLTY------NEFAEPNWRSLLNEIIKEGYRRVIIAL 71 (335)
T ss_pred CceEEEEecCCCChH------HHHHHHHHHHHHHhccCC--ceEEEE------eccCCCCHHHHHHHHHHCCCCEEEEec
Confidence 458999999998321 244566666667665543 466666 777899999999999999999999999
Q ss_pred cc-cccccchhhhhhhHHHHHHHhccccceeEEEecCCCCCCCcceEEecCCCCCHHHHHHHHHHHHHHHhcCC
Q psy5712 242 IA-FVNEHIETLHEMDIEYCHDLGKEVSVFSMYLFTGPGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFP 314 (386)
Q Consensus 242 L~-f~~~~~eT~~~~d~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~I~~~~d~p~fI~ala~~I~~~l~~~~ 314 (386)
++ |.+.|+. . |+.. .+..+. ...+.+.. .....+++++-++++.||.+++++++++++.+...+
T Consensus 72 lFL~~G~Hv~--~--DIP~--~L~~~~-~~~~~~~~--~~~~~i~i~l~~pLG~~p~l~~ll~~Rv~eal~~~~ 136 (335)
T PRK05782 72 AFLGRGNHVF--R--DIMG--ELGVQR-LNSWEVSK--ISGKEVEFYVTEPLSDSPLVGLALYYRLARALDALP 136 (335)
T ss_pred ccccCCcchh--h--hHHH--HHHHhh-hcchhhhh--cCCCceeEEECCCCCCChHHHHHHHHHHHHHhhcCC
Confidence 77 5555544 3 3321 122100 00010000 001235667888999999999999999999986543
No 28
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=98.33 E-value=3.3e-06 Score=69.13 Aligned_cols=90 Identities=16% Similarity=0.161 Sum_probs=55.8
Q ss_pred EEEEEecCcchhhhccCCCcHHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHHHHHCCCCEEEEEccc
Q psy5712 164 IILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLLVPIA 243 (386)
Q Consensus 164 ~ll~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~L~~~G~~~IvvlPL~ 243 (386)
++||+.||++.. ......+.++.+.++ +. .++.++| ++ ..|+++++++++.+.|+++|+++|++
T Consensus 2 ~illvgHGSr~~-------~~~~~~~l~~~l~~~-~~-~~v~~~~------lE-~~P~i~~~l~~l~~~G~~~i~lvPl~ 65 (103)
T cd03413 2 AVVFMGHGTDHP-------SNAVYAALEYVLREE-DP-ANVFVGT------VE-GYPGLDDVLAKLKKAGIKKVTLMPLM 65 (103)
T ss_pred eEEEEECCCCch-------hhhHHHHHHHHHHhc-CC-CcEEEEE------Ec-CCCCHHHHHHHHHHcCCCEEEEEehh
Confidence 589999999842 222222333333333 22 2455555 67 69999999999999999999999987
Q ss_pred -cccccchh-hhhhhHHHHHHHhccccc
Q psy5712 244 -FVNEHIET-LHEMDIEYCHDLGKEVSV 269 (386)
Q Consensus 244 -f~~~~~eT-~~~~d~e~~~~~~~~~g~ 269 (386)
+...|+.. +-..+...++...++.|+
T Consensus 66 L~~G~H~~~Dipge~~~SW~~~l~~~g~ 93 (103)
T cd03413 66 LVAGDHAHNDMAGDEPDSWKSILEAAGI 93 (103)
T ss_pred heecccchhcCCCCCchhHHHHHHHCCC
Confidence 55666542 111111234555555565
No 29
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=98.28 E-value=1e-06 Score=71.92 Aligned_cols=95 Identities=24% Similarity=0.424 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHHHHHCCCCEEEEEccc-cccccchhhhhhhHHH-HH
Q psy5712 184 PSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLLVPIA-FVNEHIETLHEMDIEY-CH 261 (386)
Q Consensus 184 ~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~L~~~G~~~IvvlPL~-f~~~~~eT~~~~d~e~-~~ 261 (386)
..++...++.+.++++ . ++.++| +....|++++++++|.+.|+++|+|+|++ |.+.++. . |+.. ..
T Consensus 9 ~~~~~~la~~l~~~~~-~-~v~~~f------le~~~P~l~~~l~~l~~~g~~~ivvvP~fL~~G~h~~--~--DIp~~l~ 76 (105)
T PF01903_consen 9 NAELEDLADRLRERLP-V-PVEVAF------LEFAEPSLEEALERLVAQGARRIVVVPYFLFPGYHVK--R--DIPEALA 76 (105)
T ss_dssp HHHHHHHHHHHHHHTS-S-EEEEEE------SSCCCSCCHHCCHHHHCCTCSEEEEEEESSSSSHHHH--C--HHHHHHC
T ss_pred HHHHHHHHHHHHhhcC-C-eEEEEE------EecCCCCHHHHHHHHHHcCCCeEEEEeeeecCccchH--h--HHHHHHH
Confidence 4567777788888877 3 677777 56669999999999999999999999976 4444333 2 2221 11
Q ss_pred HHhccccceeEEEecCCCCCCCcceEEecCCCCCHHHHHHHHH
Q psy5712 262 DLGKEVSVFSMYLFTGPGSPSNISWSLIDRWSTHPLLCKVFAE 304 (386)
Q Consensus 262 ~~~~~~g~~~~~~~~~~~~~~~~~~~~I~~~~d~p~fI~ala~ 304 (386)
...... ..+++.+.++++.||...+++++
T Consensus 77 ~~~~~~--------------~~~~v~~~~pLG~~p~l~~~l~e 105 (105)
T PF01903_consen 77 EARERH--------------PGIEVRVAPPLGPHPLLAELLAE 105 (105)
T ss_dssp HHHHCS--------------TTEEEEE---GGGSCCHHHHHH-
T ss_pred HHHhhC--------------CceEEEECCCCCCCHHHHHHHhC
Confidence 111111 23456777779999999988874
No 30
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=98.10 E-value=1.4e-05 Score=64.85 Aligned_cols=74 Identities=19% Similarity=0.297 Sum_probs=53.0
Q ss_pred EEEEEecCcchhhhccCCCcHHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHHHHHCCCCEEEEEccc
Q psy5712 164 IILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLLVPIA 243 (386)
Q Consensus 164 ~ll~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~L~~~G~~~IvvlPL~ 243 (386)
++|+.+||++... ......+.++.+.++.+.. ++..+| ++-..|++++++++|.++|+++|+++|++
T Consensus 1 ~ivlv~hGS~~~~------~~~~~~~l~~~l~~~~~~~-~v~~af------le~~~p~~~~~l~~l~~~g~~~v~vvPlf 67 (101)
T cd03416 1 ALLLVGHGSRDPR------AAEALEALAERLRERLPGD-EVELAF------LELAEPSLAEALDELAAQGATRIVVVPLF 67 (101)
T ss_pred CEEEEEcCCCCHH------HHHHHHHHHHHHHhhCCCC-cEEEEE------EEcCCCCHHHHHHHHHHcCCCEEEEEeeE
Confidence 3789999998321 2335555666676666433 566676 33358999999999999999999999987
Q ss_pred -cccccch
Q psy5712 244 -FVNEHIE 250 (386)
Q Consensus 244 -f~~~~~e 250 (386)
+.+.|++
T Consensus 68 l~~G~h~~ 75 (101)
T cd03416 68 LLAGGHVK 75 (101)
T ss_pred eCCCcccc
Confidence 4555543
No 31
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=98.02 E-value=9.4e-05 Score=62.82 Aligned_cols=118 Identities=11% Similarity=0.093 Sum_probs=73.5
Q ss_pred EEEEEecCcchhhhccCCCcH-HHHHHHHHHHHHHhcCCCCceeEeeeee-----ccCCCCCccHHHHHHHHHHCCCCEE
Q psy5712 164 IILFSAHSLPLRAVNRGDPYP-SEVGATVQGVMQELNNCNPYHLVWQSKV-----GPLPWLGPFTDDALKGYVKQGKKNF 237 (386)
Q Consensus 164 ~ll~saHg~P~~~v~~Gd~y~-~~~~~~~~~l~~~lg~~~~~~~~~qs~~-----G~~~w~~P~i~d~l~~L~~~G~~~I 237 (386)
+||+.+||+-. +.. ....+.++.+.++.+. .++..+|-|+. .......|++.++|++|.++|+++|
T Consensus 2 aillv~fGS~~-------~~~~~~~~~i~~~l~~~~p~-~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V 73 (127)
T cd03412 2 AILLVSFGTSY-------PTAEKTIDAIEDKVRAAFPD-YEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEV 73 (127)
T ss_pred eEEEEeCCCCC-------HHHHHHHHHHHHHHHHHCCC-CeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEE
Confidence 68999999962 222 2344445566666654 36778887643 0011347999999999999999999
Q ss_pred EEEccccccccchhhhhhhHHHHHHHhccccceeEEEecCCCCCCCcceEEecCCCCCHHHHHHHHHHHHH
Q psy5712 238 LLVPIAFVNEHIETLHEMDIEYCHDLGKEVSVFSMYLFTGPGSPSNISWSLIDRWSTHPLLCKVFAERIQE 308 (386)
Q Consensus 238 vvlPL~f~~~~~eT~~~~d~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~I~~~~d~p~fI~ala~~I~~ 308 (386)
+|+|++... ..+ ..++ . +..++ ++ ....++.+-+++..++.-++.+++.+.+
T Consensus 74 ~V~Pl~l~~-G~e-~~di--~---~~v~~-----~~-------~~~~~i~~g~pLl~~~~d~~~v~~al~~ 125 (127)
T cd03412 74 IVQSLHIIP-GEE-YEKL--K---REVDA-----FK-------KGFKKIKLGRPLLYSPEDYEEVAAALKD 125 (127)
T ss_pred EEEeCeeEC-cHH-HHHH--H---HHHHH-----Hh-------CCCceEEEccCCCCCHHHHHHHHHHHHh
Confidence 999987322 222 2222 2 11111 11 0123466667788888888888777654
No 32
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]
Probab=97.91 E-value=0.00086 Score=63.30 Aligned_cols=220 Identities=11% Similarity=0.116 Sum_probs=119.3
Q ss_pred ceEEEEEccCCCCC--hhHHHHH---HHHhcCCCCCcCCchhhhhhc-cHHHHHHhcccCCcccccccccccccCCCCCE
Q psy5712 34 KTAILMLNMGGPTH--TDQVSEY---LHRIMTDRDMIQLPEAWSLHC-QEKNARSTKEIPGNRRWVSDIEVDSAPGTAER 107 (386)
Q Consensus 34 k~aiLlvn~GsP~~--~~~v~~f---L~~~~~d~~vi~~p~~~~l~~-~~~~~~~Y~~igg~~~~t~~~~~~~~~~g~~~ 107 (386)
++++|++++||+.. .+.+..+ +.....++.|.- ..++. .|.+...-+.+ ...|+++
T Consensus 2 ~~~~llvgHGsr~p~~~~~~~~~a~~~~~~~~~~~v~~----~f~e~~~P~l~~~~~al--------------~~~G~~~ 63 (245)
T COG2138 2 MPALLLVGHGSRLPRGREVAEAIAARLEERGDFPPVRV----AFLELAEPSLREALQAL--------------VARGVDR 63 (245)
T ss_pred CcceeeeecCCCCccHHHHHHHHHHHHHhhcCCccchh----HHHHhcCCCHHHHHHHH--------------HhcCCCe
Confidence 46899999999993 3444444 444444443321 00111 12222322222 4569999
Q ss_pred EEEEEecCcc--c------------ccCCCCCceEEEeccCCCChHHHHHHHHHHHHHHHhCCcccCCceEEEEEecCcc
Q psy5712 108 VVVIFSQVSS--V------------KLGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLP 173 (386)
Q Consensus 108 ~iv~~p~y~~--~------------~~~~~~~~~~~~i~~~~~~p~~i~a~~~~I~~~l~~~~~~~~~~~~ll~saHg~P 173 (386)
|+++|++-+ + .+..++.... . +++.++...+.+.+++.+.....+. +-..+++..+|+=
T Consensus 64 -ivvVPlfl~~g~H~~~DIP~~L~~~~~~~~~~~~--~-p~G~~~~~~~~~~~r~~~~~~~~~~---~~~~vv~~~~Gs~ 136 (245)
T COG2138 64 -IVVVPLFLAAGYHTKRDIPAELGLARQAHPQVDL--S-PLGTHPAVLDLLGQRLEDAGADEAD---DAERVVLEPRGSS 136 (245)
T ss_pred -EEEeehhhccCchhhcccHHHHHHhhhcCCcccc--c-ccCCchHHHHHHHHHHHHhcccccc---ccceEEEeccCCC
Confidence 999997531 1 1122333222 2 8999999999999998887655321 1123777777664
Q ss_pred hhhhccCCCcHH-HHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHHHHHCCCCEEEEEccccccccchhh
Q psy5712 174 LRAVNRGDPYPS-EVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLLVPIAFVNEHIETL 252 (386)
Q Consensus 174 ~~~v~~Gd~y~~-~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~L~~~G~~~IvvlPL~f~~~~~eT~ 252 (386)
. +-.. .+...++.+.+..+....+..+|. | + ..|.+.+....+. .++++|+|++ ..+..-|.
T Consensus 137 ~-------~~~~~~~~~va~~l~~~~~~~~~~~~~~~---~-~--~~~~l~~~~~~~~---~~~~vv~P~f-L~~G~l~~ 199 (245)
T COG2138 137 D-------PIANAAVYRVARLLGEGTASWKAVITLFT---G-V--AEPGLAGETARLR---YRRVVVLPYF-LFDGLLTD 199 (245)
T ss_pred c-------ccchhHHHHHHHHHHhccCCceeeeeeec---c-c--cCcchhhhhhhcc---cCcEEEEEhh-HhCchhhh
Confidence 1 1111 233333333332211111222321 2 1 2677777777665 7899999955 33334333
Q ss_pred hhhhHHHHHHHhccccceeEEEecCCCCCCCcceEEecCCCCCHHHHHHHHHHHHHHHhc
Q psy5712 253 HEMDIEYCHDLGKEVSVFSMYLFTGPGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQ 312 (386)
Q Consensus 253 ~~~d~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~I~~~~d~p~fI~ala~~I~~~l~~ 312 (386)
+.... .++... ..+..+..-++.+.+|...+++.+++.+....
T Consensus 200 ~~~~~---~~~~~~--------------~~~~~i~~~~~lG~~p~l~~~~~~r~~~~~~~ 242 (245)
T COG2138 200 RIRPE---VELRLA--------------VPEGEIALARPLGTHPRLADAVLDRVREARAG 242 (245)
T ss_pred hhHHh---hhhhhc--------------cCCcceEecCcCCCCHHHHHHHHHHHHHHHhh
Confidence 32210 011000 12233555667999999999999999887643
No 33
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]
Probab=97.81 E-value=0.00011 Score=69.23 Aligned_cols=129 Identities=19% Similarity=0.306 Sum_probs=82.2
Q ss_pred EEEEEecCcchhhhccCCCcHH-HHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHHHHHCCCCEEEEEcc
Q psy5712 164 IILFSAHSLPLRAVNRGDPYPS-EVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLLVPI 242 (386)
Q Consensus 164 ~ll~saHg~P~~~v~~Gd~y~~-~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~L~~~G~~~IvvlPL 242 (386)
++|+..||++. |+.. ...+.+..+.++.... .+.++| ++..+|+++++++.+..+|+++|+++|+
T Consensus 4 ~~llvgHGsr~-------p~~~~~~~~~a~~~~~~~~~~-~v~~~f------~e~~~P~l~~~~~al~~~G~~~ivvVPl 69 (245)
T COG2138 4 ALLLVGHGSRL-------PRGREVAEAIAARLEERGDFP-PVRVAF------LELAEPSLREALQALVARGVDRIVVVPL 69 (245)
T ss_pred ceeeeecCCCC-------ccHHHHHHHHHHHHHhhcCCc-cchhHH------HHhcCCCHHHHHHHHHhcCCCeEEEeeh
Confidence 68899999984 3333 3444444455555433 566666 6777999999999999999999999998
Q ss_pred cc-ccccchhhhhhhHHHHHHHhccccceeEEEecCCCCCCCcceEEecCCCCCHHHHHHHHHHHHHHHhcCCccccCce
Q psy5712 243 AF-VNEHIETLHEMDIEYCHDLGKEVSVFSMYLFTGPGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDV 321 (386)
Q Consensus 243 ~f-~~~~~eT~~~~d~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~I~~~~d~p~fI~ala~~I~~~l~~~~~~~~~~~ 321 (386)
++ ...|++ . |+.. ++..... .. .+..+. +++.||...+.+.+++.+.....+. +.
T Consensus 70 fl~~g~H~~--~--DIP~--~L~~~~~--~~-----------~~~~~~-p~G~~~~~~~~~~~r~~~~~~~~~~----~~ 125 (245)
T COG2138 70 FLAAGYHTK--R--DIPA--ELGLARQ--AH-----------PQVDLS-PLGTHPAVLDLLGQRLEDAGADEAD----DA 125 (245)
T ss_pred hhccCchhh--c--ccHH--HHHHhhh--cC-----------Cccccc-ccCCchHHHHHHHHHHHHhcccccc----cc
Confidence 73 344433 3 3331 2211100 00 011112 6999999999999999888765431 21
Q ss_pred -EEEEeecCC
Q psy5712 322 -IILFSAHSL 330 (386)
Q Consensus 322 -~llfSaHsl 330 (386)
.+++..||-
T Consensus 126 ~~vv~~~~Gs 135 (245)
T COG2138 126 ERVVLEPRGS 135 (245)
T ss_pred ceEEEeccCC
Confidence 266666664
No 34
>PLN02757 sirohydrochlorine ferrochelatase
Probab=97.80 E-value=0.0001 Score=64.74 Aligned_cols=110 Identities=12% Similarity=0.163 Sum_probs=69.6
Q ss_pred CCCCCceEEEEEccCCCCC--hhHHHHHHHHhcCCCCCcCCchhhhhhc-cHHHHHHhcccCCcccccccccccccCCCC
Q psy5712 29 DSSKPKTAILMLNMGGPTH--TDQVSEYLHRIMTDRDMIQLPEAWSLHC-QEKNARSTKEIPGNRRWVSDIEVDSAPGTA 105 (386)
Q Consensus 29 ~~~~~k~aiLlvn~GsP~~--~~~v~~fL~~~~~d~~vi~~p~~~~l~~-~~~~~~~Y~~igg~~~~t~~~~~~~~~~g~ 105 (386)
++..+++|||||++||++. .+++..+...+-.......+ ..-.++. .|.+.+..+++ ...|+
T Consensus 8 ~~~~~~~~lllvgHGSrd~~a~~~~~~la~~l~~~~~~~~V-~~aFle~~~Psl~eal~~l--------------~~~g~ 72 (154)
T PLN02757 8 NGVGDKDGVVIVDHGSRRKESNLMLEEFVAMYKQKTGHPIV-EPAHMELAEPSIKDAFGRC--------------VEQGA 72 (154)
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHhhCCCCcE-EEEEEecCCCCHHHHHHHH--------------HHCCC
Confidence 3446678999999999993 35666555554332211000 0000110 23333333322 34589
Q ss_pred CEEEEEEecC--ccc----------c--cCCCCCceEEEeccCCCChHHHHHHHHHHHHHHHh
Q psy5712 106 ERVVVIFSQV--SSV----------K--LGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQ 154 (386)
Q Consensus 106 ~~~iv~~p~y--~~~----------~--~~~~~~~~~~~i~~~~~~p~~i~a~~~~I~~~l~~ 154 (386)
++ |+++|+| ++. . +..++++++.+.++++.+|.+++++.+++++++..
T Consensus 73 ~~-vvVvP~FL~~G~H~~~DIp~~v~~~~~~~p~~~i~~~~pLG~~p~l~~ll~~Ri~eal~~ 134 (154)
T PLN02757 73 SR-VIVSPFFLSPGRHWQEDIPALTAEAAKEHPGVKYLVTAPIGLHELMVDVVNDRIKYCLSH 134 (154)
T ss_pred CE-EEEEEhhhcCCcchHhHHHHHHHHHHHHCCCcEEEECCCCCCCHHHHHHHHHHHHHHhhc
Confidence 99 9999964 322 1 24567889999999999999999999999999865
No 35
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=97.38 E-value=0.00058 Score=57.66 Aligned_cols=99 Identities=10% Similarity=0.147 Sum_probs=59.2
Q ss_pred ceEEEEEccCCCCC--hhHHHHHHHHhc---CCCCCcCCchhhhhhc-cHHHHHHhcccCCcccccccccccccCCCCCE
Q psy5712 34 KTAILMLNMGGPTH--TDQVSEYLHRIM---TDRDMIQLPEAWSLHC-QEKNARSTKEIPGNRRWVSDIEVDSAPGTAER 107 (386)
Q Consensus 34 k~aiLlvn~GsP~~--~~~v~~fL~~~~---~d~~vi~~p~~~~l~~-~~~~~~~Y~~igg~~~~t~~~~~~~~~~g~~~ 107 (386)
|+||||+++||++. .+++..+...+. .+..|-- -.++. .|.+.+.-+.+ ...|+++
T Consensus 1 ~~~lvlv~hGS~~~~~~~~~~~~~~~l~~~~~~~~v~~----afle~~~P~l~~~l~~l--------------~~~g~~~ 62 (126)
T PRK00923 1 MLGLLLVGHGSRLPYNKEVVTKIAEKIKEKHPFYIVEV----GFMEFNEPTIPEALKKL--------------IGTGADK 62 (126)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHhCCCCeEEE----EEEEcCCCCHHHHHHHH--------------HHcCCCE
Confidence 57999999999982 244444433332 2222210 00000 12222222222 3569999
Q ss_pred EEEEEecC--ccc--c---------------c--CCCCCceEEEeccCCCChHHHHHHHHHHHHH
Q psy5712 108 VVVIFSQV--SSV--K---------------L--GSPSNISWSLIDRWSTHPLLCKVFAERIQEE 151 (386)
Q Consensus 108 ~iv~~p~y--~~~--~---------------~--~~~~~~~~~~i~~~~~~p~~i~a~~~~I~~~ 151 (386)
|+++|+| ++. + + ...+.+.+.+.++.+.+|.+++++.++++++
T Consensus 63 -v~vvPlfl~~G~h~~~dip~~~~~~~~~~~~~~~~~~~~~i~~~~~lG~~p~l~~~~~~r~~e~ 126 (126)
T PRK00923 63 -IIVVPVFLAHGVHTKRDIPRILGLDEGEKEEIEEDGKDVEIVYAEPLGADERIADIVLKRANEA 126 (126)
T ss_pred -EEEEchhhccCcccccccchhhhcccccccchhhcCCCeEEEEcCCCCCCHHHHHHHHHHHhhC
Confidence 9999975 321 1 1 1245678889999999999999999998763
No 36
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=97.19 E-value=0.0013 Score=55.78 Aligned_cols=98 Identities=12% Similarity=0.149 Sum_probs=62.1
Q ss_pred eEEEEEccCCCC--ChhHHHHHHHHhcCCCCCcCCch-hhhhhc-cHHHHHHhcccCCcccccccccccccCCCCCEEEE
Q psy5712 35 TAILMLNMGGPT--HTDQVSEYLHRIMTDRDMIQLPE-AWSLHC-QEKNARSTKEIPGNRRWVSDIEVDSAPGTAERVVV 110 (386)
Q Consensus 35 ~aiLlvn~GsP~--~~~~v~~fL~~~~~d~~vi~~p~-~~~l~~-~~~~~~~Y~~igg~~~~t~~~~~~~~~~g~~~~iv 110 (386)
|||||+++||++ ..++++.+...+-.... .|- .-.|+. .|.+.+..+++ ...|+++ |+
T Consensus 1 ~~lllvgHGSR~~~~~~~~~~la~~l~~~~~---~~v~~afle~~~P~l~~~l~~l--------------~~~G~~~-iv 62 (125)
T cd03415 1 TAIIIITHGSRRNTFNEDMEEWAAYLERKLG---VPVYLTYNEYAEPNWRDLLNEL--------------LSEGYGH-II 62 (125)
T ss_pred CEEEEEecCCCChHHHHHHHHHHHHHHhccC---CceEEEEeecCCCCHHHHHHHH--------------HHCCCCE-EE
Confidence 689999999999 34667766665543221 110 000111 33344444433 3469999 88
Q ss_pred EEecCc--cc----------cc--------CC--CCCceEEEeccCCCChHHHHHHHHHHHH
Q psy5712 111 IFSQVS--SV----------KL--------GS--PSNISWSLIDRWSTHPLLCKVFAERIQE 150 (386)
Q Consensus 111 ~~p~y~--~~----------~~--------~~--~~~~~~~~i~~~~~~p~~i~a~~~~I~~ 150 (386)
++|+|- +. .+ .. .+.+.+.+.++.+.||.+.+++++++++
T Consensus 63 VvPlFL~~G~Hv~~DiP~~l~~~~~~~~~~~~~~~~~~~i~~~~pLG~~p~l~~~l~~r~~~ 124 (125)
T cd03415 63 IALAFLGRGNHVARDIMGELGVSRFYKWVMSKYGGKEILVYVTEPLADSPLVKLALFYRVKR 124 (125)
T ss_pred EehhhccCCcchHHHHHHHHHhhcccchhhhccCCCCceEEEeCCCCCCHHHHHHHHHHHHh
Confidence 889753 11 11 11 2457799999999999999999999876
No 37
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=97.01 E-value=0.0021 Score=53.36 Aligned_cols=97 Identities=18% Similarity=0.245 Sum_probs=59.2
Q ss_pred eEEEEEccCCCCC--hhHHHHHHHHhc---CCCCCcCCchhhhhhc-cHHHHHHhcccCCcccccccccccccCCCCCEE
Q psy5712 35 TAILMLNMGGPTH--TDQVSEYLHRIM---TDRDMIQLPEAWSLHC-QEKNARSTKEIPGNRRWVSDIEVDSAPGTAERV 108 (386)
Q Consensus 35 ~aiLlvn~GsP~~--~~~v~~fL~~~~---~d~~vi~~p~~~~l~~-~~~~~~~Y~~igg~~~~t~~~~~~~~~~g~~~~ 108 (386)
+||||+++||++. .+++..+...+- .+.+|.- -.++. .|.+.+..+++ ...|+++
T Consensus 1 ~a~llv~HGS~~~~~~~~~~~l~~~l~~~~~~~~v~~----afle~~~P~~~~~l~~l--------------~~~g~~~- 61 (117)
T cd03414 1 TAVVLVGRGSSDPDANADVAKIARLLEEGTGFARVET----AFAAATRPSLPEALERL--------------RALGARR- 61 (117)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEE----EEecCCCCCHHHHHHHH--------------HHcCCCE-
Confidence 4899999999972 245554444332 2222210 00111 22222322222 3468999
Q ss_pred EEEEec--Cccc---------c--cCCCCCceEEEeccCCCChHHHHHHHHHHHHH
Q psy5712 109 VVIFSQ--VSSV---------K--LGSPSNISWSLIDRWSTHPLLCKVFAERIQEE 151 (386)
Q Consensus 109 iv~~p~--y~~~---------~--~~~~~~~~~~~i~~~~~~p~~i~a~~~~I~~~ 151 (386)
|+++|+ +++. . +.. +...+.+.++.+.+|.+++++.++++++
T Consensus 62 i~vvP~fL~~G~h~~~i~~~~~~~~~~-~~~~i~~~~pLG~~~~l~~~l~~r~~~~ 116 (117)
T cd03414 62 VVVLPYLLFTGVLMDRIEEQVAELAAE-PGIEFVLAPPLGPHPELAEALLERVREA 116 (117)
T ss_pred EEEEechhcCCchHHHHHHHHHHHHhC-CCceEEECCCCCCCHHHHHHHHHHHHhh
Confidence 889996 3432 1 123 6788999999999999999999998875
No 38
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=96.94 E-value=0.0021 Score=51.66 Aligned_cols=52 Identities=33% Similarity=0.635 Sum_probs=43.7
Q ss_pred EEEEeecCCchhhhccCCCCHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCchhhhhc
Q psy5712 322 IILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALK 385 (386)
Q Consensus 322 ~llfSaHslP~~~i~~GDpY~~q~~~t~~~l~~~l~~~~~~~lafQSr~G~~~WL~P~t~d~l~ 385 (386)
.|||++||.|.. ++|...+++.++.|.++++. ..+.++|+|. ++|+++++|+
T Consensus 1 ~lllv~HGs~~~-----s~~~~~~~~~~~~l~~~~~~-~~v~~a~~~~------~~P~i~~~l~ 52 (101)
T cd03409 1 GLLVVGHGSPYK-----DPYKKDIEAQAHNLAESLPD-FPYYVGFQSG------LGPDTEEAIR 52 (101)
T ss_pred CEEEEECCCCCC-----ccHHHHHHHHHHHHHHHCCC-CCEEEEEECC------CCCCHHHHHH
Confidence 389999999854 68999999999999988753 5799999995 7899988764
No 39
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=96.64 E-value=0.009 Score=58.85 Aligned_cols=107 Identities=14% Similarity=0.172 Sum_probs=66.7
Q ss_pred CCCceEEEEEccCCCC--ChhHHHHHHHHhcCCCCCcCCch-hhhhhc-cHHHHHHhcccCCcccccccccccccCCCCC
Q psy5712 31 SKPKTAILMLNMGGPT--HTDQVSEYLHRIMTDRDMIQLPE-AWSLHC-QEKNARSTKEIPGNRRWVSDIEVDSAPGTAE 106 (386)
Q Consensus 31 ~~~k~aiLlvn~GsP~--~~~~v~~fL~~~~~d~~vi~~p~-~~~l~~-~~~~~~~Y~~igg~~~~t~~~~~~~~~~g~~ 106 (386)
++++++|||++|||++ ..+++..+...+-.... .|- .-.|+. .|.+.+..+++ ...|++
T Consensus 3 ~~~~~aiLLvgHGSRdp~~~~~~~~La~~l~~~~~---~~V~~aFLE~~ePsl~eal~~l--------------~~~G~~ 65 (335)
T PRK05782 3 RQSNTAIILIGHGSRRETFNSDMEGMANYLKEKLG---VPIYLTYNEFAEPNWRSLLNEI--------------IKEGYR 65 (335)
T ss_pred CCCCceEEEEecCCCChHHHHHHHHHHHHHHhccC---CceEEEEeccCCCCHHHHHHHH--------------HHCCCC
Confidence 3467899999999999 33555555444432221 110 000111 33344433333 456999
Q ss_pred EEEEEEecC--ccc----------c--c------CC--CCCceEEEeccCCCChHHHHHHHHHHHHHHHhC
Q psy5712 107 RVVVIFSQV--SSV----------K--L------GS--PSNISWSLIDRWSTHPLLCKVFAERIQEELKQF 155 (386)
Q Consensus 107 ~~iv~~p~y--~~~----------~--~------~~--~~~~~~~~i~~~~~~p~~i~a~~~~I~~~l~~~ 155 (386)
+ |+++|+| ++. . + .. .+.+++.+.++++.||.+++++.+++++++...
T Consensus 66 ~-IvVvPlFL~~G~Hv~~DIP~~L~~~~~~~~~~~~~~~~~i~i~l~~pLG~~p~l~~ll~~Rv~eal~~~ 135 (335)
T PRK05782 66 R-VIIALAFLGRGNHVFRDIMGELGVQRLNSWEVSKISGKEVEFYVTEPLSDSPLVGLALYYRLARALDAL 135 (335)
T ss_pred E-EEEecccccCCcchhhhHHHHHHHhhhcchhhhhcCCCceeEEECCCCCCChHHHHHHHHHHHHHhhcC
Confidence 9 9999964 331 1 1 11 134677999999999999999999999988643
No 40
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=96.57 E-value=0.006 Score=51.74 Aligned_cols=108 Identities=12% Similarity=0.031 Sum_probs=64.9
Q ss_pred eEEEEEccCCCCC-----hhHHHHHHHHhcCCCCCcCCchhhhhhccHHHHHHhcccCCc-ccccccccccccCCCCCEE
Q psy5712 35 TAILMLNMGGPTH-----TDQVSEYLHRIMTDRDMIQLPEAWSLHCQEKNARSTKEIPGN-RRWVSDIEVDSAPGTAERV 108 (386)
Q Consensus 35 ~aiLlvn~GsP~~-----~~~v~~fL~~~~~d~~vi~~p~~~~l~~~~~~~~~Y~~igg~-~~~t~~~~~~~~~~g~~~~ 108 (386)
+||||++|||.+. .+.+.+=+++-+.|.+|..... +..+.++-++-|.. ....+.++ .+...|+++
T Consensus 1 ~aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~aft------s~~i~~~l~~~~~~~p~~~eaL~-~l~~~G~~~- 72 (127)
T cd03412 1 KAILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFT------SRMIRKKLKKRGIEVDTPEEALA-KLAADGYTE- 72 (127)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEec------HHHHHHHHHhcCCCCCCHHHHHH-HHHHCCCCE-
Confidence 4999999999992 2344444555577766543222 33333333333211 11112232 234669999
Q ss_pred EEEEecC--ccc---------ccCCCCCceEEEeccCCCChHHHHHHHHHHHH
Q psy5712 109 VVIFSQV--SSV---------KLGSPSNISWSLIDRWSTHPLLCKVFAERIQE 150 (386)
Q Consensus 109 iv~~p~y--~~~---------~~~~~~~~~~~~i~~~~~~p~~i~a~~~~I~~ 150 (386)
|+|+|++ |+. .+...+..++.+.++...++..++.+++.|.+
T Consensus 73 V~V~Pl~l~~G~e~~di~~~v~~~~~~~~~i~~g~pLl~~~~d~~~v~~al~~ 125 (127)
T cd03412 73 VIVQSLHIIPGEEYEKLKREVDAFKKGFKKIKLGRPLLYSPEDYEEVAAALKD 125 (127)
T ss_pred EEEEeCeeECcHHHHHHHHHHHHHhCCCceEEEccCCCCCHHHHHHHHHHHHh
Confidence 9999974 432 11235677899999999998888888877654
No 41
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=96.02 E-value=0.067 Score=51.06 Aligned_cols=74 Identities=12% Similarity=0.155 Sum_probs=38.9
Q ss_pred EEEEEecCcchhhhccCCCcHHHHHHHHHHHHHHhcCCCCceeEeeeeecc-----C-CCCCccHHHHHHHHHHCCCCEE
Q psy5712 164 IILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGP-----L-PWLGPFTDDALKGYVKQGKKNF 237 (386)
Q Consensus 164 ~ll~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~-----~-~w~~P~i~d~l~~L~~~G~~~I 237 (386)
+||+.++|+=.. .+ -..-+...-+.++++... .++..+|-|++=. . ..--++..++|++|.++|+++|
T Consensus 2 AIllvsFGTs~~---~a--r~~ti~~ie~~~~~~fp~-~~V~~AfTS~~I~~kl~~~~g~~i~~~~eaL~~L~~~G~~~V 75 (262)
T PF06180_consen 2 AILLVSFGTSYP---EA--REKTIDAIEKAVREAFPD-YDVRRAFTSRIIRKKLAERDGIKIDSPEEALAKLADEGYTEV 75 (262)
T ss_dssp EEEEEE---S-C---CC--CHHHHHHHHHHHHHCSTT-SEEEEEES-HHHHHHHHHCHT-----HHHHHHHHHHCT--EE
T ss_pred EEEEEeCCCCCH---HH--HHHHHHHHHHHHHHHCCC-CcEEEEchHHHHHHHHHhcCCCCcCCHHHHHHHHHHCCCCEE
Confidence 688888888521 11 111233344456665543 3677888776421 1 2235899999999999999999
Q ss_pred EEEccc
Q psy5712 238 LLVPIA 243 (386)
Q Consensus 238 vvlPL~ 243 (386)
+|.|+.
T Consensus 76 ~VQplh 81 (262)
T PF06180_consen 76 VVQPLH 81 (262)
T ss_dssp EEEE--
T ss_pred EEeecc
Confidence 999987
No 42
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=92.32 E-value=0.16 Score=44.57 Aligned_cols=36 Identities=11% Similarity=0.186 Sum_probs=25.8
Q ss_pred cCCCCCEEEEEEecCccc------------cc---CCCCCceEEEeccCCCC
Q psy5712 101 APGTAERVVVIFSQVSSV------------KL---GSPSNISWSLIDRWSTH 137 (386)
Q Consensus 101 ~~~g~~~~iv~~p~y~~~------------~~---~~~~~~~~~~i~~~~~~ 137 (386)
...|+++ |+++|+||++ .+ +....+++++|++|+++
T Consensus 109 ~~~g~~~-iivlPl~P~~S~~Tt~s~~~~~~~~~~~~~~~~~~~~i~~~~~~ 159 (159)
T cd03411 109 KADGVDR-IVVLPLYPQYSASTTGSYLDEVERALKKLRPAPELRVIRSFYDH 159 (159)
T ss_pred HHcCCCE-EEEEECCcccccccHHHHHHHHHHHHHhcCCCCcEEEeCccccC
Confidence 4569999 9999988832 11 22346789999999875
No 43
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=91.08 E-value=0.25 Score=40.26 Aligned_cols=66 Identities=9% Similarity=0.135 Sum_probs=34.1
Q ss_pred eEEEEEccCCCCChhHHHHHHHHhcCCCCCcCCchhhhhhccHHHHHHhcccCCcccccccccccccCCCCCEEEEEEec
Q psy5712 35 TAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPEAWSLHCQEKNARSTKEIPGNRRWVSDIEVDSAPGTAERVVVIFSQ 114 (386)
Q Consensus 35 ~aiLlvn~GsP~~~~~v~~fL~~~~~d~~vi~~p~~~~l~~~~~~~~~Y~~igg~~~~t~~~~~~~~~~g~~~~iv~~p~ 114 (386)
.|||||+|||+..-.+.-..|...+..+.-.++-. -.++..|.+.+..+++ ...|+++ |+++|+
T Consensus 1 ~~illvgHGSr~~~~~~~~~l~~~l~~~~~~~v~~-~~lE~~P~i~~~l~~l--------------~~~G~~~-i~lvPl 64 (103)
T cd03413 1 EAVVFMGHGTDHPSNAVYAALEYVLREEDPANVFV-GTVEGYPGLDDVLAKL--------------KKAGIKK-VTLMPL 64 (103)
T ss_pred CeEEEEECCCCchhhhHHHHHHHHHHhcCCCcEEE-EEEcCCCCHHHHHHHH--------------HHcCCCE-EEEEeh
Confidence 38999999999943444444444443221000000 0011123333333322 4569999 999997
Q ss_pred Cc
Q psy5712 115 VS 116 (386)
Q Consensus 115 y~ 116 (386)
+-
T Consensus 65 ~L 66 (103)
T cd03413 65 ML 66 (103)
T ss_pred hh
Confidence 43
No 44
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=83.00 E-value=1.1 Score=35.85 Aligned_cols=11 Identities=27% Similarity=0.576 Sum_probs=10.3
Q ss_pred EEEEEccCCCC
Q psy5712 36 AILMLNMGGPT 46 (386)
Q Consensus 36 aiLlvn~GsP~ 46 (386)
|||++++||+.
T Consensus 1 ~ivlv~hGS~~ 11 (101)
T cd03416 1 ALLLVGHGSRD 11 (101)
T ss_pred CEEEEEcCCCC
Confidence 68999999998
No 45
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=60.54 E-value=7.9 Score=30.91 Aligned_cols=45 Identities=22% Similarity=0.326 Sum_probs=31.2
Q ss_pred cCCCCCEEEEEEecC--ccc----------c--cCCCCCceEEEeccCCCChHHHHHHHH
Q psy5712 101 APGTAERVVVIFSQV--SSV----------K--LGSPSNISWSLIDRWSTHPLLCKVFAE 146 (386)
Q Consensus 101 ~~~g~~~~iv~~p~y--~~~----------~--~~~~~~~~~~~i~~~~~~p~~i~a~~~ 146 (386)
...|+++ |+++|++ ++. . +...+++++.+-++.+.+|.+.++++|
T Consensus 47 ~~~g~~~-ivvvP~fL~~G~h~~~DIp~~l~~~~~~~~~~~v~~~~pLG~~p~l~~~l~e 105 (105)
T PF01903_consen 47 VAQGARR-IVVVPYFLFPGYHVKRDIPEALAEARERHPGIEVRVAPPLGPHPLLAELLAE 105 (105)
T ss_dssp HCCTCSE-EEEEEESSSSSHHHHCHHHHHHCHHHHCSTTEEEEE---GGGSCCHHHHHH-
T ss_pred HHcCCCe-EEEEeeeecCccchHhHHHHHHHHHHhhCCceEEEECCCCCCCHHHHHHHhC
Confidence 3459999 8999964 432 1 245678899999999999999998875
No 46
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=59.52 E-value=12 Score=36.05 Aligned_cols=60 Identities=22% Similarity=0.321 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHHHhcCCccccCceEEEEeecCCchhhhc----cC-------CCCHHHHHHHHHHHHHH
Q psy5712 295 HPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVN----RG-------DPYPSEVGATVQGVMQE 355 (386)
Q Consensus 295 ~p~fI~ala~~I~~~l~~~~~~~~~~~~llfSaHslP~~~i~----~G-------DpY~~q~~~t~~~l~~~ 355 (386)
++.-++.|.+.=.-.++... +.++...+||||||+|....+ +| =|+...++..++..++.
T Consensus 43 N~~Vv~~L~~~g~~fve~l~-e~p~~~~VIfsAHGVs~~v~~~a~~r~l~v~DATCPlVtKvh~~v~~~~~~ 113 (294)
T COG0761 43 NRYVVDRLREKGAIFVEELD-EVPDGATVIFSAHGVSPAVREEAKERGLKVIDATCPLVTKVHKEVERYARE 113 (294)
T ss_pred CHHHHHHHHHcCCEeccccc-cCCCCCEEEEECCCCCHHHHHHHHHCCCEEEecCCCcchHHHHHHHHHHhC
Confidence 44455555543222222211 222344899999999988753 23 27777777777666543
No 47
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=45.65 E-value=2.5e+02 Score=27.75 Aligned_cols=84 Identities=12% Similarity=0.164 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHHHHhCCcccCCceEEEEEecCcchhhhccCCCcHHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCC
Q psy5712 138 PLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPW 217 (386)
Q Consensus 138 p~~i~a~~~~I~~~l~~~~~~~~~~~~ll~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w 217 (386)
..|++++...|...+..++. ..+..|+..-|+|... .+.++.+.++.+.+.++......++.-.
T Consensus 30 ~~y~~~l~~Ei~~~~~~~~~---~~v~~i~~GGGtPs~l------~~~~l~~ll~~i~~~~~~~~~~eitie~------- 93 (360)
T TIGR00539 30 EEYTQALCQDLKHALSQTDQ---EPLESIFIGGGTPNTL------SVEAFERLFESIYQHASLSDDCEITTEA------- 93 (360)
T ss_pred HHHHHHHHHHHHHHHHhcCC---CcccEEEeCCCchhcC------CHHHHHHHHHHHHHhCCCCCCCEEEEEe-------
Confidence 45888888888765544321 1344567677777321 2456666677776665533233333321
Q ss_pred CCc--cHHHHHHHHHHCCCCEEE
Q psy5712 218 LGP--FTDDALKGYVKQGKKNFL 238 (386)
Q Consensus 218 ~~P--~i~d~l~~L~~~G~~~Iv 238 (386)
.| ..++.++.|++.|+.+|-
T Consensus 94 -np~~lt~e~l~~l~~~Gv~ris 115 (360)
T TIGR00539 94 -NPELITAEWCKGLKGAGINRLS 115 (360)
T ss_pred -CCCCCCHHHHHHHHHcCCCEEE
Confidence 23 346778888888887764
No 48
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=42.65 E-value=3.1e+02 Score=27.57 Aligned_cols=87 Identities=10% Similarity=0.146 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHHHhCCcccCCceEEEEEecCcchhhhccCCCcHHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCC
Q psy5712 138 PLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPW 217 (386)
Q Consensus 138 p~~i~a~~~~I~~~l~~~~~~~~~~~~ll~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w 217 (386)
..|++++.+.|+....... ...+.-|+...|+|... .+.++.+.+..+.+.++......++.-...+.
T Consensus 52 ~~Y~~~l~~ei~~~~~~~~---~~~i~siy~GGGTPs~L------~~~~L~~ll~~i~~~~~~~~~~eit~E~~p~~--- 119 (394)
T PRK08898 52 AAYLDALRADLEQALPLVW---GRQVHTVFIGGGTPSLL------SAAGLDRLLSDVRALLPLDPDAEITLEANPGT--- 119 (394)
T ss_pred HHHHHHHHHHHHHHHHhcc---CCceeEEEECCCCcCCC------CHHHHHHHHHHHHHhCCCCCCCeEEEEECCCC---
Confidence 5689988888875432221 12455677777777322 35677788888888776532234443322221
Q ss_pred CCccHHHHHHHHHHCCCCEEEE
Q psy5712 218 LGPFTDDALKGYVKQGKKNFLL 239 (386)
Q Consensus 218 ~~P~i~d~l~~L~~~G~~~Ivv 239 (386)
...+-|+.|.+.|+++|-+
T Consensus 120 ---~~~e~L~~l~~~Gvnrisi 138 (394)
T PRK08898 120 ---FEAEKFAQFRASGVNRLSI 138 (394)
T ss_pred ---CCHHHHHHHHHcCCCeEEE
Confidence 2358899999999998864
No 49
>PRK05660 HemN family oxidoreductase; Provisional
Probab=42.55 E-value=2.8e+02 Score=27.68 Aligned_cols=87 Identities=14% Similarity=0.229 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHHHhCCcccCCceEEEEEecCcchhhhccCCCcHHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCC
Q psy5712 138 PLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPW 217 (386)
Q Consensus 138 p~~i~a~~~~I~~~l~~~~~~~~~~~~ll~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w 217 (386)
..|++++.+.|+..+.... ...+.-|+...|+|... ...++.+.++.+.+.++......++....-+
T Consensus 37 ~~Y~~~l~~Ei~~~~~~~~---~~~v~ti~~GGGtPs~l------~~~~l~~ll~~l~~~~~~~~~~eit~e~np~---- 103 (378)
T PRK05660 37 DEYVDHLLADLDADLPLVQ---GREVHSIFIGGGTPSLF------SAEAIQRLLDGVRARLPFAPDAEITMEANPG---- 103 (378)
T ss_pred HHHHHHHHHHHHHHhHhcc---CCceeEEEeCCCccccC------CHHHHHHHHHHHHHhCCCCCCcEEEEEeCcC----
Confidence 4589999988876543321 12345677777777422 2466777777777766543233343322111
Q ss_pred CCccHHHHHHHHHHCCCCEEEE
Q psy5712 218 LGPFTDDALKGYVKQGKKNFLL 239 (386)
Q Consensus 218 ~~P~i~d~l~~L~~~G~~~Ivv 239 (386)
-...+.++.|++.|+.+|-+
T Consensus 104 --~l~~e~l~~Lk~~Gv~risi 123 (378)
T PRK05660 104 --TVEADRFVGYQRAGVNRISI 123 (378)
T ss_pred --cCCHHHHHHHHHcCCCEEEe
Confidence 12457788888888887754
No 50
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=41.71 E-value=92 Score=29.00 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=19.2
Q ss_pred HHHHHHHHHCCCCEEEEEccc
Q psy5712 223 DDALKGYVKQGKKNFLLVPIA 243 (386)
Q Consensus 223 ~d~l~~L~~~G~~~IvvlPL~ 243 (386)
..+|.+|+++|+++|++-|+.
T Consensus 63 ~~aL~klk~~gy~eviiQ~lh 83 (265)
T COG4822 63 IQALNKLKDQGYEEVIIQPLH 83 (265)
T ss_pred HHHHHHHHHccchheeeeeee
Confidence 468999999999999999987
No 51
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=40.73 E-value=2e+02 Score=26.70 Aligned_cols=86 Identities=16% Similarity=0.298 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhCCcccCCceEEEEEecCcchhhhccCCCcHHHHHHHHHHHHHHhcCC-CCceeEeeeeeccC------
Q psy5712 143 VFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNC-NPYHLVWQSKVGPL------ 215 (386)
Q Consensus 143 a~~~~I~~~l~~~~~~~~~~~~ll~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~~-~~~~~~~qs~~G~~------ 215 (386)
++...+++.+...+. + .+++-.||-=. .+...+...+ .+...++.+ ..+..+|.|.....
T Consensus 3 ~~~~~~~~~l~~~~~----~-~vlvfVHGyn~-------~f~~a~~r~a-ql~~~~~~~~~~i~FsWPS~g~~~~Y~~d~ 69 (233)
T PF05990_consen 3 AFQAQLNQRLAKSPD----K-EVLVFVHGYNN-------SFEDALRRAA-QLAHDLGFPGVVILFSWPSDGSLLGYFYDR 69 (233)
T ss_pred HHHHHHHHHHhhCCC----C-eEEEEEeCCCC-------CHHHHHHHHH-HHHHHhCCCceEEEEEcCCCCChhhhhhhh
Confidence 456667777765432 2 46777887632 1222333333 455556654 24455666643322
Q ss_pred ---CCCCccHHHHHHHHHHC-CCCEEEEEc
Q psy5712 216 ---PWLGPFTDDALKGYVKQ-GKKNFLLVP 241 (386)
Q Consensus 216 ---~w~~P~i~d~l~~L~~~-G~~~IvvlP 241 (386)
.|..|.+.+.|+.|.+. |.++|.++.
T Consensus 70 ~~a~~s~~~l~~~L~~L~~~~~~~~I~ila 99 (233)
T PF05990_consen 70 ESARFSGPALARFLRDLARAPGIKRIHILA 99 (233)
T ss_pred hhHHHHHHHHHHHHHHHHhccCCceEEEEE
Confidence 34577888888999887 899999886
No 52
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=40.66 E-value=3.5e+02 Score=26.26 Aligned_cols=140 Identities=13% Similarity=0.116 Sum_probs=74.0
Q ss_pred eccCCCChHHHHHHHHHHHHHHHhCCcccCCceEEEEEecCcchhhhccCCCcHHHHHHHHHHHHHHhcC-CC-Ccee--
Q psy5712 131 IDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNN-CN-PYHL-- 206 (386)
Q Consensus 131 i~~~~~~p~~i~a~~~~I~~~l~~~~~~~~~~~~ll~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~-~~-~~~~-- 206 (386)
=+++|-+|.....+++.|.++|.+...... + .+-.+.+.|..++.+.-+.+.+.+.. +. .+.+
T Consensus 144 dPHiWldp~~~~~~a~~I~~~L~~~dP~~~-~------------~y~~N~~~~~~~L~~l~~~~~~~l~~~~~~~~i~~H 210 (311)
T PRK09545 144 NMHIWLSPEIARATAVAIHDKLVELMPQSK-A------------KLDANLKDFEAQLAQTDKQIGNQLAPVKGKGYFVFH 210 (311)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHhChhhH-H------------HHHHHHHHHHHHHHHHHHHHHHHhhccCCCcEEEEC
Confidence 467899999999999999999987532110 0 01122334444554444444444321 11 1111
Q ss_pred -Ee---eee--------eccCCCCCccHHH---HHHHHHHCCCCEEEEEccccccccchhhhhhhHHHHHHHhcccccee
Q psy5712 207 -VW---QSK--------VGPLPWLGPFTDD---ALKGYVKQGKKNFLLVPIAFVNEHIETLHEMDIEYCHDLGKEVSVFS 271 (386)
Q Consensus 207 -~~---qs~--------~G~~~w~~P~i~d---~l~~L~~~G~~~IvvlPL~f~~~~~eT~~~~d~e~~~~~~~~~g~~~ 271 (386)
+| .-+ ++...=.+|+..+ +++.+++.+++-|++=|-+ ... ..+.++++.|..
T Consensus 211 ~af~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~-~~~-----------~~~~la~e~g~~- 277 (311)
T PRK09545 211 DAYGYFEKHYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQF-RPA-----------VIESVAKGTSVR- 277 (311)
T ss_pred chHHHHHHhCCCceeeeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCC-ChH-----------HHHHHHHhcCCe-
Confidence 11 001 1111123576554 7788888999887776643 221 134455666653
Q ss_pred EEEecCCCCCCCcceEEecCCCC-----CHHHHHHHHHHHHHHH
Q psy5712 272 MYLFTGPGSPSNISWSLIDRWST-----HPLLCKVFAERIQEEL 310 (386)
Q Consensus 272 ~~~~~~~~~~~~~~~~~I~~~~d-----~p~fI~ala~~I~~~l 310 (386)
+.. ++++.. ...|++.|...++...
T Consensus 278 v~~--------------ldpl~~~~~~~~~~Y~~~m~~n~~~l~ 307 (311)
T PRK09545 278 MGT--------------LDPLGTNIKLGKDSYSEFLSQLANQYA 307 (311)
T ss_pred EEE--------------eccccccccCCHhHHHHHHHHHHHHHH
Confidence 222 222432 2578888877765543
No 53
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=39.32 E-value=2.9e+02 Score=24.89 Aligned_cols=47 Identities=13% Similarity=0.056 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHHHhcCCccccCceEEEEeecCCchhhhccCCCCHHHHHHHHHHHHHHhcC
Q psy5712 294 THPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNN 358 (386)
Q Consensus 294 d~p~fI~ala~~I~~~l~~~~~~~~~~~~llfSaHslP~~~i~~GDpY~~q~~~t~~~l~~~l~~ 358 (386)
+.+.|.+.+.+.+++..++ .. + .+ -.||-+-+..+.-.+.+++++|+
T Consensus 69 ~~e~~~~~l~~~l~~~~~~-g~----~-~v------------v~G~i~sd~~~~~~e~~~~~~gl 115 (194)
T cd01994 69 EEEDEVEDLKELLRKLKEE-GV----D-AV------------VFGAILSEYQRTRVERVCERLGL 115 (194)
T ss_pred CchHHHHHHHHHHHHHHHc-CC----C-EE------------EECccccHHHHHHHHHHHHHcCC
Confidence 6788888888887776443 21 2 23 34655555455555556666553
No 54
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=39.29 E-value=44 Score=28.30 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCccccCceEEEEeecCCchhhhccCCCCHHHHHHHHHHHHHHh
Q psy5712 292 WSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQEL 356 (386)
Q Consensus 292 ~~d~p~fI~ala~~I~~~l~~~~~~~~~~~~llfSaHslP~~~i~~GDpY~~q~~~t~~~l~~~l 356 (386)
++-.+.-.+.+.+.|+.+++... ++..|++|+||=| =.|-.|. ++.|++.|
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~----p~KpLVlSfHG~t----GtGKn~v------~~liA~~l 77 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPN----PRKPLVLSFHGWT----GTGKNFV------SRLIAEHL 77 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCC----CCCCEEEEeecCC----CCcHHHH------HHHHHHHH
Confidence 55677788889999999986531 3447999999986 2233343 55666664
No 55
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=39.27 E-value=3.4e+02 Score=27.08 Aligned_cols=85 Identities=14% Similarity=0.273 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHHHHhCCcccCCceEEEEEecCcchhhhccCCCcHHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCC
Q psy5712 138 PLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPW 217 (386)
Q Consensus 138 p~~i~a~~~~I~~~l~~~~~~~~~~~~ll~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w 217 (386)
..|++++.+.|+.....++. ..+.-|+...|+|.-. .+.++.+.++.+.+.++......++.-.
T Consensus 34 ~~Y~~aL~~Ei~~~~~~~~~---~~i~tiy~GGGTPs~l------~~~~L~~ll~~i~~~f~~~~~~eit~E~------- 97 (380)
T PRK09057 34 ARFAAAFLRELATEAARTGP---RTLTSIFFGGGTPSLM------QPETVAALLDAIARLWPVADDIEITLEA------- 97 (380)
T ss_pred HHHHHHHHHHHHHHHHHcCC---CCcCeEEeCCCccccC------CHHHHHHHHHHHHHhCCCCCCccEEEEE-------
Confidence 56999999998865544321 2345677777777322 3567777888888776554223333321
Q ss_pred CCc--cHHHHHHHHHHCCCCEEEE
Q psy5712 218 LGP--FTDDALKGYVKQGKKNFLL 239 (386)
Q Consensus 218 ~~P--~i~d~l~~L~~~G~~~Ivv 239 (386)
.| ...+-|+.|++.|+.+|-+
T Consensus 98 -~P~~i~~e~L~~l~~~Gvnrisl 120 (380)
T PRK09057 98 -NPTSVEAGRFRGYRAAGVNRVSL 120 (380)
T ss_pred -CcCcCCHHHHHHHHHcCCCEEEE
Confidence 23 2348889999999988864
No 56
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=39.25 E-value=2e+02 Score=28.51 Aligned_cols=66 Identities=21% Similarity=0.261 Sum_probs=43.7
Q ss_pred hccCCCcH--HHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHHHHHCCCCEEEEEccccccccch
Q psy5712 177 VNRGDPYP--SEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLLVPIAFVNEHIE 250 (386)
Q Consensus 177 v~~Gd~y~--~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~L~~~G~~~IvvlPL~f~~~~~e 250 (386)
++.|||.- ..+.+.++++.+++|.+..+.+ |. -| .=-.+++++.|.+.|.+.|-+-|.-+.+-+.+
T Consensus 84 iTGGdPl~~ieR~~~~ir~LK~efG~~fHiHL-YT--~g-----~~~~~e~l~~L~eAGLDEIRfHp~~~~~~~~e 151 (353)
T COG2108 84 ITGGDPLLEIERTVEYIRLLKDEFGEDFHIHL-YT--TG-----ILATEEALKALAEAGLDEIRFHPPRPGSKSSE 151 (353)
T ss_pred ccCCChHHHHHHHHHHHHHHHHhhccceeEEE-ee--cc-----ccCCHHHHHHHHhCCCCeEEecCCCccccccH
Confidence 57788763 3566677889999886533222 11 01 11247899999999999999999644444433
No 57
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=38.52 E-value=92 Score=28.06 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=24.3
Q ss_pred CCCEEEEEEecCcccccCCCCCceEEEeccCCCChHHHHHHHHHHHHH
Q psy5712 104 TAERVVVIFSQVSSVKLGSPSNISWSLIDRWSTHPLLCKVFAERIQEE 151 (386)
Q Consensus 104 g~~~~iv~~p~y~~~~~~~~~~~~~~~i~~~~~~p~~i~a~~~~I~~~ 151 (386)
.+|+||+.+|+| |+.-|.....|.|++...
T Consensus 61 ~aD~iV~~fPl~------------------w~~~Pa~LK~wiD~V~~~ 90 (184)
T PRK04930 61 EHDVIVFQHPLY------------------TYSCPALLKEWLDRVLSR 90 (184)
T ss_pred hCCEEEEEcCcc------------------ccCCcHHHHHHHHHHHhc
Confidence 578877789983 888899999999998753
No 58
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=37.95 E-value=1.7e+02 Score=28.14 Aligned_cols=74 Identities=16% Similarity=0.139 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHH---HHHCCCCEEEEEccccccccchhhhhhhHHHH
Q psy5712 184 PSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKG---YVKQGKKNFLLVPIAFVNEHIETLHEMDIEYC 260 (386)
Q Consensus 184 ~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~---L~~~G~~~IvvlPL~f~~~~~eT~~~~d~e~~ 260 (386)
.+|..+.++...+..+. ++.+-. .+| ..+++++++. ..+.|++-++++|.+|..-+.+.+ .+++
T Consensus 56 ~eEr~~~~~~~~~~~~~--~~~via--gvg-----~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l----~~~f 122 (293)
T PRK04147 56 TEEKKQVLEIVAEEAKG--KVKLIA--QVG-----SVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEI----CDYY 122 (293)
T ss_pred HHHHHHHHHHHHHHhCC--CCCEEe--cCC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHH----HHHH
Confidence 35666666766666653 233221 133 5778888764 456799999999987644322322 2455
Q ss_pred HHHhccccce
Q psy5712 261 HDLGKEVSVF 270 (386)
Q Consensus 261 ~~~~~~~g~~ 270 (386)
+++++..+..
T Consensus 123 ~~va~a~~lP 132 (293)
T PRK04147 123 REIIDSADNP 132 (293)
T ss_pred HHHHHhCCCC
Confidence 6666654443
No 59
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=35.35 E-value=2e+02 Score=27.46 Aligned_cols=74 Identities=16% Similarity=0.255 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHHH---HHCCCCEEEEEccccccccchhhhhhhHHHH
Q psy5712 184 PSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGY---VKQGKKNFLLVPIAFVNEHIETLHEMDIEYC 260 (386)
Q Consensus 184 ~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~L---~~~G~~~IvvlPL~f~~~~~eT~~~~d~e~~ 260 (386)
.+|..+.++.+.+..+.+ +.+- ..+| ..+++++++.. .+.|++-++++|++|..-+-+.+. +++
T Consensus 53 ~~Er~~l~~~~~~~~~~~--~~vi--~gv~-----~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~----~y~ 119 (289)
T PF00701_consen 53 DEERKELLEIVVEAAAGR--VPVI--AGVG-----ANSTEEAIELARHAQDAGADAVLVIPPYYFKPSQEELI----DYF 119 (289)
T ss_dssp HHHHHHHHHHHHHHHTTS--SEEE--EEEE-----SSSHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHH----HHH
T ss_pred HHHHHHHHHHHHHHccCc--eEEE--ecCc-----chhHHHHHHHHHHHhhcCceEEEEeccccccchhhHHH----HHH
Confidence 356666666666666543 3322 2345 56788887654 457999999998775443333222 456
Q ss_pred HHHhccccce
Q psy5712 261 HDLGKEVSVF 270 (386)
Q Consensus 261 ~~~~~~~g~~ 270 (386)
+++++..+..
T Consensus 120 ~~ia~~~~~p 129 (289)
T PF00701_consen 120 RAIADATDLP 129 (289)
T ss_dssp HHHHHHSSSE
T ss_pred HHHHhhcCCC
Confidence 6777555544
No 60
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=35.08 E-value=76 Score=26.90 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=25.5
Q ss_pred cCCCChHHHHHHHHHHHHHHHhCCcccCCceEEEEEecCcc
Q psy5712 133 RWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLP 173 (386)
Q Consensus 133 ~~~~~p~~i~a~~~~I~~~l~~~~~~~~~~~~ll~saHg~P 173 (386)
..+.++.-.+.+.+.|+..+... . ++..+++|+||.|
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~-~---p~KpLVlSfHG~t 62 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP-N---PRKPLVLSFHGWT 62 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC-C---CCCCEEEEeecCC
Confidence 34556666777777777777542 1 2336999999999
No 61
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=34.35 E-value=3.6e+02 Score=25.57 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.5
Q ss_pred ccCCCChHHHHHHHHHHHHHHHhC
Q psy5712 132 DRWSTHPLLCKVFAERIQEELKQF 155 (386)
Q Consensus 132 ~~~~~~p~~i~a~~~~I~~~l~~~ 155 (386)
+++|.+|.....+++.|.++|.+.
T Consensus 113 PH~Wldp~~~~~~a~~Ia~~L~~~ 136 (282)
T cd01017 113 PHVWLSPVLAIQQVENIKDALIKL 136 (282)
T ss_pred CccccCHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999875
No 62
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=33.05 E-value=3.9e+02 Score=27.29 Aligned_cols=92 Identities=13% Similarity=0.132 Sum_probs=61.0
Q ss_pred ChHHHHHHHHHHHHHHHhCCcccCCceEEEEEecCcchhhhccCCCcHHHHHHHHHHHHHHhc-CCCCceeEeeeeeccC
Q psy5712 137 HPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELN-NCNPYHLVWQSKVGPL 215 (386)
Q Consensus 137 ~p~~i~a~~~~I~~~l~~~~~~~~~~~~ll~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg-~~~~~~~~~qs~~G~~ 215 (386)
...|++++.+-|+........ +..+.-|+.-+|+|-.. .+.+++.....+.+.++ ......++.-
T Consensus 64 ~~~Y~~aL~~Ei~~~~~~~~~--~~~v~ti~~GGGTPslL------~~~~l~~ll~~l~~~~~~~~~~~EitiE------ 129 (416)
T COG0635 64 VDEYLDALLEEIELVAALLGG--QREVKTIYFGGGTPSLL------SPEQLERLLKALRELFNDLDPDAEITIE------ 129 (416)
T ss_pred HHHHHHHHHHHHHHHHhhcCC--CCeEEEEEECCCccccC------CHHHHHHHHHHHHHhcccCCCCceEEEE------
Confidence 455888888888776655432 12467788899999433 46778888888888884 4323444432
Q ss_pred CCCCcc--HHHHHHHHHHCCCCEEEEEcccc
Q psy5712 216 PWLGPF--TDDALKGYVKQGKKNFLLVPIAF 244 (386)
Q Consensus 216 ~w~~P~--i~d~l~~L~~~G~~~IvvlPL~f 244 (386)
- .|. ..+.++.+.+.|+.||=+=.-.|
T Consensus 130 -~-nP~~~~~e~~~~l~~~GvNRiSlGVQsf 158 (416)
T COG0635 130 -A-NPGTVEAEKFKALKEAGVNRISLGVQSF 158 (416)
T ss_pred -e-CCCCCCHHHHHHHHHcCCCEEEeccccC
Confidence 1 453 57899999999999885433334
No 63
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=32.21 E-value=1.8e+02 Score=26.82 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=29.4
Q ss_pred cceEEecCCCCCHHHHHHHHHHHHHHHhcCCccccCceEEEEeecCC
Q psy5712 284 ISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSL 330 (386)
Q Consensus 284 ~~~~~I~~~~d~p~fI~ala~~I~~~l~~~~~~~~~~~~llfSaHsl 330 (386)
+++.+|+.+||++.-++++++.+++. .. .. .-|.-||.+
T Consensus 132 iR~~vIPg~nd~~e~i~~ia~~l~~l--~~-----~~-~~llpyh~~ 170 (213)
T PRK10076 132 PRLPLIPGFTLSRENMQQALDVLIPL--GI-----KQ-IHLLPFHQY 170 (213)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHc--CC-----ce-EEEecCCcc
Confidence 46788999999999999999988753 11 23 456788875
No 64
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=32.00 E-value=1.8e+02 Score=27.43 Aligned_cols=74 Identities=15% Similarity=0.239 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHH---HHHCCCCEEEEEccccccccchhhhhhhHHHH
Q psy5712 184 PSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKG---YVKQGKKNFLLVPIAFVNEHIETLHEMDIEYC 260 (386)
Q Consensus 184 ~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~---L~~~G~~~IvvlPL~f~~~~~eT~~~~d~e~~ 260 (386)
.+|..+.++.+.+..+. ++.+- ..+| .++++++++. ..+.|++-++++|.+|..-+-+.+ .++.
T Consensus 49 ~~Er~~l~~~~~~~~~~--~~~vi--~gv~-----~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~----~~~~ 115 (281)
T cd00408 49 DEERKEVIEAVVEAVAG--RVPVI--AGVG-----ANSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGI----VAHF 115 (281)
T ss_pred HHHHHHHHHHHHHHhCC--CCeEE--EecC-----CccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHH----HHHH
Confidence 45666677777776653 23322 2233 5677877764 455799999999987544222222 2445
Q ss_pred HHHhccccce
Q psy5712 261 HDLGKEVSVF 270 (386)
Q Consensus 261 ~~~~~~~g~~ 270 (386)
+.+++..+..
T Consensus 116 ~~ia~~~~~p 125 (281)
T cd00408 116 KAVADASDLP 125 (281)
T ss_pred HHHHhcCCCC
Confidence 6666554443
No 65
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=31.89 E-value=5.2e+02 Score=25.62 Aligned_cols=86 Identities=9% Similarity=0.168 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHHHHhCCcccCCceEEEEEecCcchhhhccCCCcHHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCC
Q psy5712 138 PLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPW 217 (386)
Q Consensus 138 p~~i~a~~~~I~~~l~~~~~~~~~~~~ll~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w 217 (386)
..|++++.+.|+. +...+. ..+.-|+..-|+|... ...++.+.++.+.+.++......++...+.+
T Consensus 31 ~~y~~~l~~Ei~~-~~~~~~---~~i~~i~~gGGtpt~l------~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~---- 96 (377)
T PRK08599 31 DEYLDALIKEMNT-YAIRPF---DKLKTIYIGGGTPTAL------SAEQLERLLTAIHRNLPLSGLEEFTFEANPG---- 96 (377)
T ss_pred HHHHHHHHHHHHH-hhhcCC---CceeEEEeCCCCcccC------CHHHHHHHHHHHHHhCCCCCCCEEEEEeCCC----
Confidence 4588888888743 333221 1333455556666311 3567788888888876653223333322211
Q ss_pred CCccHHHHHHHHHHCCCCEEEE
Q psy5712 218 LGPFTDDALKGYVKQGKKNFLL 239 (386)
Q Consensus 218 ~~P~i~d~l~~L~~~G~~~Ivv 239 (386)
-...+.++.|++.|+.+|-+
T Consensus 97 --~l~~e~l~~l~~~G~~rvsi 116 (377)
T PRK08599 97 --DLTKEKLQVLKDSGVNRISL 116 (377)
T ss_pred --CCCHHHHHHHHHcCCCEEEE
Confidence 13578899999999987653
No 66
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=31.89 E-value=2.9e+02 Score=22.61 Aligned_cols=84 Identities=11% Similarity=0.079 Sum_probs=36.3
Q ss_pred CccHHHHHHHHHHCCCCEEEEEccccccccchhhhhhhHHHHHHHhccccceeEEEecCCCCCCCcceEEecCCCCCHHH
Q psy5712 219 GPFTDDALKGYVKQGKKNFLLVPIAFVNEHIETLHEMDIEYCHDLGKEVSVFSMYLFTGPGSPSNISWSLIDRWSTHPLL 298 (386)
Q Consensus 219 ~P~i~d~l~~L~~~G~~~IvvlPL~f~~~~~eT~~~~d~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~I~~~~d~p~f 298 (386)
+|+ .+-+++|++.|++.||-+=. -...-+-....+ .++.++++|+. |..+|- -.. .+
T Consensus 14 Q~~-~~d~~~la~~GfktVInlRp--d~E~~~qp~~~~---~~~~a~~~Gl~-y~~iPv--------------~~~--~~ 70 (110)
T PF04273_consen 14 QPS-PEDLAQLAAQGFKTVINLRP--DGEEPGQPSSAE---EAAAAEALGLQ-YVHIPV--------------DGG--AI 70 (110)
T ss_dssp S---HHHHHHHHHCT--EEEE-S---TTSTTT-T-HHC---HHHHHHHCT-E-EEE------------------TT--T-
T ss_pred CCC-HHHHHHHHHCCCcEEEECCC--CCCCCCCCCHHH---HHHHHHHcCCe-EEEeec--------------CCC--CC
Confidence 554 45678999999998886632 111111001111 13466778874 666554 111 12
Q ss_pred HHHHHHHHHHHHhcCCccccCceEEEEeecCC
Q psy5712 299 CKVFAERIQEELKQFPAEVQKDVIILFSAHSL 330 (386)
Q Consensus 299 I~ala~~I~~~l~~~~~~~~~~~~llfSaHsl 330 (386)
-..-++...+.++..+. . .++|..-|-
T Consensus 71 ~~~~v~~f~~~l~~~~~----P-vl~hC~sG~ 97 (110)
T PF04273_consen 71 TEEDVEAFADALESLPK----P-VLAHCRSGT 97 (110)
T ss_dssp -HHHHHHHHHHHHTTTT----S-EEEE-SCSH
T ss_pred CHHHHHHHHHHHHhCCC----C-EEEECCCCh
Confidence 33444445555665442 3 577776664
No 67
>KOG2040|consensus
Probab=31.88 E-value=1.7e+02 Score=31.82 Aligned_cols=95 Identities=16% Similarity=0.122 Sum_probs=61.3
Q ss_pred ccCCCChHHHHHHHHHHHHHHHhCCcccCCceEEEEEecCc-c------------hhhhccCCCcHHHHHHHHHHHHHHh
Q psy5712 132 DRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSL-P------------LRAVNRGDPYPSEVGATVQGVMQEL 198 (386)
Q Consensus 132 ~~~~~~p~~i~a~~~~I~~~l~~~~~~~~~~~~ll~saHg~-P------------~~~v~~Gd~y~~~~~~~~~~l~~~l 198 (386)
+.=+.+-.|....+ |+..+...++..|.-..|=.||||+ | .....+|.-.-.++.+.+++-++.|
T Consensus 604 PNsGA~GEYaGL~~--IRaY~~~kge~hRnvClIPvSAHGTNPASA~MagmkvvpV~~~~~G~id~~dLk~kaekh~~~L 681 (1001)
T KOG2040|consen 604 PNSGAQGEYAGLRV--IRAYLESKGEGHRNVCLIPVSAHGTNPASAAMAGMKVVPVGCDANGNIDMVDLKAKAEKHKDNL 681 (1001)
T ss_pred CCCCcccchhhHHH--HHHHHHhccCCcceeEEEeecccCCChhhHHhcCCEEEEeeccCCCCccHHHHHHHHHHhhhhh
Confidence 33344445555544 5566655544334333445899998 3 3333456555667777777777766
Q ss_pred cCCCCceeEeeeeeccCCCCCccHHHHHHHHHHCCC
Q psy5712 199 NNCNPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGK 234 (386)
Q Consensus 199 g~~~~~~~~~qs~~G~~~w~~P~i~d~l~~L~~~G~ 234 (386)
. .+.+.|-|..|- -+|.+.|+++-+.+.|-
T Consensus 682 a---a~MvTYPST~Gv---fE~~i~d~cd~iHehGG 711 (1001)
T KOG2040|consen 682 A---ALMVTYPSTHGV---FEEGIDDICDIIHEHGG 711 (1001)
T ss_pred h---eeEEeccccccc---ccccHHHHHHHHHhcCC
Confidence 4 578889888883 28999999999988664
No 68
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=30.88 E-value=3.9e+02 Score=25.12 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=21.8
Q ss_pred eccCCCChHHHHHHHHHHHHHHHhC
Q psy5712 131 IDRWSTHPLLCKVFAERIQEELKQF 155 (386)
Q Consensus 131 i~~~~~~p~~i~a~~~~I~~~l~~~ 155 (386)
=+++|.+|.....+++.|.++|.+.
T Consensus 111 dPH~Wldp~~~~~~a~~I~~~L~~~ 135 (266)
T cd01018 111 DPHIWLSPANAKIMAENIYEALAEL 135 (266)
T ss_pred CCccCcCHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999875
No 69
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=30.62 E-value=5.4e+02 Score=26.42 Aligned_cols=88 Identities=10% Similarity=0.113 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHHHhCCcccCCceEEEEEecCcchhhhccCCCcHHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCC
Q psy5712 138 PLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPW 217 (386)
Q Consensus 138 p~~i~a~~~~I~~~l~~~~~~~~~~~~ll~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w 217 (386)
..|++++.+.|+.....++. ...+.-|+..-|+|... .+.++.+.++.+.+.++......++.....
T Consensus 81 ~~y~~~L~~Ei~~~~~~~~~--~~~v~~i~fgGGTPs~l------~~~~l~~ll~~i~~~~~~~~~~e~tie~~p----- 147 (453)
T PRK13347 81 EAYVAALIREIRLVAASLPQ--RRRVSQLHWGGGTPTIL------NPDQFERLMAALRDAFDFAPEAEIAVEIDP----- 147 (453)
T ss_pred HHHHHHHHHHHHHHHHhcCC--CCeEEEEEEcCcccccC------CHHHHHHHHHHHHHhCCCCCCceEEEEecc-----
Confidence 35788888887765444431 11334455556666311 257788888888887664323333322111
Q ss_pred CCccHHHHHHHHHHCCCCEEEE
Q psy5712 218 LGPFTDDALKGYVKQGKKNFLL 239 (386)
Q Consensus 218 ~~P~i~d~l~~L~~~G~~~Ivv 239 (386)
.-..++.++.|++.|+++|-+
T Consensus 148 -~~lt~e~l~~L~~~G~~rvsi 168 (453)
T PRK13347 148 -RTVTAEMLQALAALGFNRASF 168 (453)
T ss_pred -ccCCHHHHHHHHHcCCCEEEE
Confidence 123678999999999988753
No 70
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=30.44 E-value=1.9e+02 Score=28.15 Aligned_cols=71 Identities=17% Similarity=0.215 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHH---HHHHCCCCEEEEEccccccccchhhhhhhHHHH
Q psy5712 184 PSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALK---GYVKQGKKNFLLVPIAFVNEHIETLHEMDIEYC 260 (386)
Q Consensus 184 ~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~---~L~~~G~~~IvvlPL~f~~~~~eT~~~~d~e~~ 260 (386)
.+|..+.++...+..+.+-++. ..+| ...++++++ ...+.|++.++++|+||..-+-+.+ .++.
T Consensus 60 ~eEr~~v~~~~~~~~~grvpvi----~Gv~-----~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l----~~yf 126 (309)
T cd00952 60 WEEKQAFVATVVETVAGRVPVF----VGAT-----TLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTA----VQFY 126 (309)
T ss_pred HHHHHHHHHHHHHHhCCCCCEE----EEec-----cCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHH----HHHH
Confidence 3566666777766665432222 2233 456677665 4455799999999887543222322 2556
Q ss_pred HHHhccc
Q psy5712 261 HDLGKEV 267 (386)
Q Consensus 261 ~~~~~~~ 267 (386)
+++++..
T Consensus 127 ~~va~a~ 133 (309)
T cd00952 127 RDVAEAV 133 (309)
T ss_pred HHHHHhC
Confidence 7777665
No 71
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=30.09 E-value=5.6e+02 Score=25.41 Aligned_cols=88 Identities=8% Similarity=0.045 Sum_probs=52.6
Q ss_pred ChHHHHHHHHHHHHHHHhCCcccCCceEEEEEecCcchhhhccCCCcHHHHHHHHHHHHHHhcCCCCceeEeeeeeccCC
Q psy5712 137 HPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLP 216 (386)
Q Consensus 137 ~p~~i~a~~~~I~~~l~~~~~~~~~~~~ll~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~ 216 (386)
...|++++.+.|+.....+.. ....+..++...|+|... .+.++.+.++.+.+.++......++...
T Consensus 35 ~~~Y~~~l~~Ei~~~~~~~~~-~~~~i~~i~~GGGTPs~l------~~~~l~~ll~~i~~~~~~~~~~e~t~e~------ 101 (375)
T PRK05628 35 PDGYLDALRAELELAAAVLGD-PAPPVSTVFVGGGTPSLL------GAEGLARVLDAVRDTFGLAPGAEVTTEA------ 101 (375)
T ss_pred HHHHHHHHHHHHHHHHHhhcc-CCCceeEEEeCCCccccC------CHHHHHHHHHHHHHhCCCCCCCEEEEEe------
Confidence 356888888887765444320 012345666667777321 2467777777777766654233333221
Q ss_pred CCCc--cHHHHHHHHHHCCCCEEEE
Q psy5712 217 WLGP--FTDDALKGYVKQGKKNFLL 239 (386)
Q Consensus 217 w~~P--~i~d~l~~L~~~G~~~Ivv 239 (386)
.| ..++.++.|.+.|+++|-+
T Consensus 102 --~p~~i~~e~l~~l~~~G~~rvsl 124 (375)
T PRK05628 102 --NPESTSPEFFAALRAAGFTRVSL 124 (375)
T ss_pred --CCCCCCHHHHHHHHHcCCCEEEE
Confidence 23 3568889999999988764
No 72
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=30.05 E-value=3.9e+02 Score=23.62 Aligned_cols=80 Identities=18% Similarity=0.242 Sum_probs=48.5
Q ss_pred CCCEEEEEEecCcccccCCCCCceEEEeccCCCChHHHHHHHHHHHHHHHhC-------C--cccCCceEEEEEecCcch
Q psy5712 104 TAERVVVIFSQVSSVKLGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQF-------P--AEVQKDVIILFSAHSLPL 174 (386)
Q Consensus 104 g~~~~iv~~p~y~~~~~~~~~~~~~~~i~~~~~~p~~i~a~~~~I~~~l~~~-------~--~~~~~~~~ll~saHg~P~ 174 (386)
.+|.||+.+|+| |+.-|+.+..|.|++...-..+ + .....+..+++++-|.|.
T Consensus 78 ~AD~iV~~~Pl~------------------~~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~ 139 (199)
T PF02525_consen 78 WADHIVFAFPLY------------------WFSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPE 139 (199)
T ss_dssp HSSEEEEEEEEB------------------TTBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSG
T ss_pred HcCcceEeccce------------------ecccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCCh
Confidence 578877789983 7778888888998875532222 1 011234467777778874
Q ss_pred hhhc-cCCC--cHHHHHHHHHHHHHHhcCC
Q psy5712 175 RAVN-RGDP--YPSEVGATVQGVMQELNNC 201 (386)
Q Consensus 175 ~~v~-~Gd~--y~~~~~~~~~~l~~~lg~~ 201 (386)
.... .|.+ ..+.+....+.+.+-+|..
T Consensus 140 ~~~~~~g~~~~~~~~~~~~~~~~~~~~G~~ 169 (199)
T PF02525_consen 140 YSYGPPGIPGRSMDHLLPYLRGILKFCGIK 169 (199)
T ss_dssp GGGSTTSSTTSHHHHHHHHHHHHHHHTTEE
T ss_pred HHhcccCCCCCChhhhHHHHHHHHHhCCCc
Confidence 3333 2332 2455555577777777864
No 73
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=29.65 E-value=2.4e+02 Score=27.11 Aligned_cols=70 Identities=14% Similarity=0.119 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHHH---HHCCCCEEEEEccccccccchhhhhhhHHHH
Q psy5712 184 PSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGY---VKQGKKNFLLVPIAFVNEHIETLHEMDIEYC 260 (386)
Q Consensus 184 ~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~L---~~~G~~~IvvlPL~f~~~~~eT~~~~d~e~~ 260 (386)
.+|..+.++...+..+. ++.+-. .+| ...++++++.. .+.|++-|+++|++|..-+.+.+. ++.
T Consensus 53 ~eEr~~~~~~~~~~~~~--~~pvi~--gv~-----~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~----~yf 119 (290)
T TIGR00683 53 TEEKKEIFRIAKDEAKD--QIALIA--QVG-----SVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIK----HYY 119 (290)
T ss_pred HHHHHHHHHHHHHHhCC--CCcEEE--ecC-----CCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHH----HHH
Confidence 45666666666666553 233321 233 56778877644 457999999999875543333222 455
Q ss_pred HHHhcc
Q psy5712 261 HDLGKE 266 (386)
Q Consensus 261 ~~~~~~ 266 (386)
++++++
T Consensus 120 ~~v~~~ 125 (290)
T TIGR00683 120 DTIIAE 125 (290)
T ss_pred HHHHhh
Confidence 666543
No 74
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=29.29 E-value=2.4e+02 Score=27.35 Aligned_cols=74 Identities=20% Similarity=0.236 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHHH---HHCCCCEEEEEccccccccchhhhhhhHHHH
Q psy5712 184 PSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGY---VKQGKKNFLLVPIAFVNEHIETLHEMDIEYC 260 (386)
Q Consensus 184 ~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~L---~~~G~~~IvvlPL~f~~~~~eT~~~~d~e~~ 260 (386)
.+|..+.++...+..+..-++. ..+| ...++++++.. .+.|++.++++|.||.--+-+-++ +.+
T Consensus 56 ~eEr~~v~~~~v~~~~grvpvi----aG~g-----~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~----~hf 122 (299)
T COG0329 56 LEERKEVLEAVVEAVGGRVPVI----AGVG-----SNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLY----AHF 122 (299)
T ss_pred HHHHHHHHHHHHHHHCCCCcEE----EecC-----CCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHH----HHH
Confidence 4566667777777776532322 2244 77889888644 456999999999886544433332 335
Q ss_pred HHHhccccce
Q psy5712 261 HDLGKEVSVF 270 (386)
Q Consensus 261 ~~~~~~~g~~ 270 (386)
+.++++.+..
T Consensus 123 ~~ia~a~~lP 132 (299)
T COG0329 123 KAIAEAVDLP 132 (299)
T ss_pred HHHHHhcCCC
Confidence 6666655543
No 75
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=28.95 E-value=6e+02 Score=25.58 Aligned_cols=85 Identities=15% Similarity=0.190 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHHHhCCcccCCceEEEEEecCcchhhhccCCCcHHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCC
Q psy5712 138 PLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPW 217 (386)
Q Consensus 138 p~~i~a~~~~I~~~l~~~~~~~~~~~~ll~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w 217 (386)
..|++++.+.|+... .. ...+.-|+..-|+|... .+.++.+.++.+.+.++......++...
T Consensus 47 ~~Y~~~L~~Ei~~~~-~~----~~~i~~iy~GGGTps~l------~~~~l~~ll~~i~~~~~~~~~~eit~E~------- 108 (400)
T PRK07379 47 EEYVEVLCQEIAITP-SF----GQPLQTVFFGGGTPSLL------SVEQLERILTTLDQRFGIAPDAEISLEI------- 108 (400)
T ss_pred HHHHHHHHHHHHHhh-cc----CCceeEEEECCCccccC------CHHHHHHHHHHHHHhCCCCCCCEEEEEe-------
Confidence 457777777765431 11 12456677777777322 3566777777777766553223333221
Q ss_pred CCc--cHHHHHHHHHHCCCCEEEEEc
Q psy5712 218 LGP--FTDDALKGYVKQGKKNFLLVP 241 (386)
Q Consensus 218 ~~P--~i~d~l~~L~~~G~~~IvvlP 241 (386)
.| ...+.++.|++.|+.+|-+=.
T Consensus 109 -~P~~lt~e~l~~l~~~GvnrislGv 133 (400)
T PRK07379 109 -DPGTFDLEQLQGYRSLGVNRVSLGV 133 (400)
T ss_pred -CCCcCCHHHHHHHHHCCCCEEEEEc
Confidence 22 346788888888888876433
No 76
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=28.23 E-value=2.8e+02 Score=26.38 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHHH---HHCCCCEEEEEccccccccchhhhhhhHHHH
Q psy5712 184 PSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGY---VKQGKKNFLLVPIAFVNEHIETLHEMDIEYC 260 (386)
Q Consensus 184 ~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~L---~~~G~~~IvvlPL~f~~~~~eT~~~~d~e~~ 260 (386)
.+|..+.++...+..+. ++.+- ..+| ..+++++++.. .+.|++-|+++|.+|..-+-+.+ .++.
T Consensus 50 ~~Er~~~~~~~~~~~~~--~~~vi--~gv~-----~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i----~~~~ 116 (285)
T TIGR00674 50 HEEHKKVIEFVVDLVNG--RVPVI--AGTG-----SNATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEGL----YQHF 116 (285)
T ss_pred HHHHHHHHHHHHHHhCC--CCeEE--EeCC-----CccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHH----HHHH
Confidence 45666666666666553 23322 1233 56788877644 45699999999877543222222 2445
Q ss_pred HHHhccccce
Q psy5712 261 HDLGKEVSVF 270 (386)
Q Consensus 261 ~~~~~~~g~~ 270 (386)
+.+++..+..
T Consensus 117 ~~i~~~~~~p 126 (285)
T TIGR00674 117 KAIAEEVDLP 126 (285)
T ss_pred HHHHhcCCCC
Confidence 6666555443
No 77
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=27.92 E-value=57 Score=31.55 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=23.0
Q ss_pred CceEEEEEecCcchhh-----------hccCCCcHHHHHHHHHHHHHH
Q psy5712 161 KDVIILFSAHSLPLRA-----------VNRGDPYPSEVGATVQGVMQE 197 (386)
Q Consensus 161 ~~~~ll~saHg~P~~~-----------v~~Gd~y~~~~~~~~~~l~~~ 197 (386)
+...++|||||.|... ++.=-|+...+..+++...++
T Consensus 66 ~~~~VIfsAHGVs~~v~~~a~~r~l~v~DATCPlVtKvh~~v~~~~~~ 113 (294)
T COG0761 66 DGATVIFSAHGVSPAVREEAKERGLKVIDATCPLVTKVHKEVERYARE 113 (294)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCEEEecCCCcchHHHHHHHHHHhC
Confidence 3447999999999322 222345666666666655543
No 78
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=27.74 E-value=4.5e+02 Score=23.61 Aligned_cols=88 Identities=17% Similarity=0.237 Sum_probs=56.8
Q ss_pred CceEEEeccCCCChHHHHHHHHHHHHHHHhCCcccCCceEEEEEecCcchhhhccCCCcHHHHHHHHHHHHHHhcCCCCc
Q psy5712 125 NISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPY 204 (386)
Q Consensus 125 ~~~~~~i~~~~~~p~~i~a~~~~I~~~l~~~~~~~~~~~~ll~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~~~~~ 204 (386)
++++..++--.+++.|.+.+.+.+++...+ .. + .+++ |+-+.+....-.+.+.+++|+. .+
T Consensus 58 gipl~~i~~~~~~e~~~~~l~~~l~~~~~~-g~----~-~vv~------------G~i~sd~~~~~~e~~~~~~gl~-~~ 118 (194)
T cd01994 58 GIPLIRIEISGEEEDEVEDLKELLRKLKEE-GV----D-AVVF------------GAILSEYQRTRVERVCERLGLE-PL 118 (194)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHHHHHHc-CC----C-EEEE------------CccccHHHHHHHHHHHHHcCCE-EE
Confidence 344555443337788998888887775432 11 1 3443 6666666777788888888874 11
Q ss_pred eeEeeeeeccCCCCCccHHHHHHHHHHCCCCEEEEEc
Q psy5712 205 HLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLLVP 241 (386)
Q Consensus 205 ~~~~qs~~G~~~w~~P~i~d~l~~L~~~G~~~IvvlP 241 (386)
. -=| +=..++.+++|.+.|++-+|+--
T Consensus 119 --~-------PLW-~~~~~~ll~e~~~~g~~~~iv~v 145 (194)
T cd01994 119 --A-------PLW-GRDQEELLREMIEAGFKAIIIKV 145 (194)
T ss_pred --e-------ccc-CCCHHHHHHHHHHcCCeEEEEEe
Confidence 1 134 44557799999999998777543
No 79
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=27.54 E-value=55 Score=25.00 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=20.3
Q ss_pred CccHHHHHHHHHHCCCCEEEEEcc
Q psy5712 219 GPFTDDALKGYVKQGKKNFLLVPI 242 (386)
Q Consensus 219 ~P~i~d~l~~L~~~G~~~IvvlPL 242 (386)
+-.+-+++++|++.|.+.|+++|+
T Consensus 49 ~~~~~~~~~~Lk~~GA~~Ilv~pi 72 (75)
T PF08029_consen 49 EKQVWDLMDKLKAAGASDILVLPI 72 (75)
T ss_dssp CCCHHHHHHHHHCTT-EEEEEEE-
T ss_pred HHHHHHHHHHHHHcCCCEEEEEec
Confidence 566889999999999999999997
No 80
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=27.45 E-value=2.9e+02 Score=26.21 Aligned_cols=74 Identities=18% Similarity=0.215 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHHH---HHCCCCEEEEEccccccccchhhhhhhHHHH
Q psy5712 184 PSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGY---VKQGKKNFLLVPIAFVNEHIETLHEMDIEYC 260 (386)
Q Consensus 184 ~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~L---~~~G~~~IvvlPL~f~~~~~eT~~~~d~e~~ 260 (386)
.+|..+.++.+.+..+. ++.+- ..+| .++++++++.. .+.|++.|+++|++|..-+-+.+ .++.
T Consensus 52 ~~Er~~l~~~~~~~~~~--~~~vi--~gv~-----~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l----~~~~ 118 (284)
T cd00950 52 DEEHEAVIEAVVEAVNG--RVPVI--AGTG-----SNNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGL----YAHF 118 (284)
T ss_pred HHHHHHHHHHHHHHhCC--CCcEE--eccC-----CccHHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHH----HHHH
Confidence 35666666666666543 23222 2233 56788887644 55799999999876533222222 2455
Q ss_pred HHHhccccce
Q psy5712 261 HDLGKEVSVF 270 (386)
Q Consensus 261 ~~~~~~~g~~ 270 (386)
+.+++..+..
T Consensus 119 ~~ia~~~~~p 128 (284)
T cd00950 119 KAIAEATDLP 128 (284)
T ss_pred HHHHhcCCCC
Confidence 6666654443
No 81
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=27.22 E-value=6.5e+02 Score=25.29 Aligned_cols=86 Identities=15% Similarity=0.191 Sum_probs=52.6
Q ss_pred ChHHHHHHHHHHHHHHHhCCcccCCceEEEEEecCcchhhhccCCCcHHHHHHHHHHHHHHhcCCCCceeEeeeeeccCC
Q psy5712 137 HPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLP 216 (386)
Q Consensus 137 ~p~~i~a~~~~I~~~l~~~~~~~~~~~~ll~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~ 216 (386)
...|++++...|+.....+.. ..+.-|+..-|+|... .+.++.+.++.+.+..+......+++-.
T Consensus 40 ~~~Y~~aL~~Ei~~~~~~~~~---~~i~tiy~GGGTPs~l------~~~~l~~ll~~i~~~~~~~~~~eitiE~------ 104 (390)
T PRK06582 40 HNQWLKSYEKEIEYFKDIIQN---KYIKSIFFGGGTPSLM------NPVIVEGIINKISNLAIIDNQTEITLET------ 104 (390)
T ss_pred HHHHHHHHHHHHHHHHHHccC---CceeEEEECCCccccC------CHHHHHHHHHHHHHhCCCCCCCEEEEEe------
Confidence 356899988887764433211 2345677667777211 3556667777777765543233444321
Q ss_pred CCCc--cHHHHHHHHHHCCCCEEEE
Q psy5712 217 WLGP--FTDDALKGYVKQGKKNFLL 239 (386)
Q Consensus 217 w~~P--~i~d~l~~L~~~G~~~Ivv 239 (386)
.| ...+.|+.|++.|+.+|-+
T Consensus 105 --nP~~~~~e~l~~l~~~GvnRiSi 127 (390)
T PRK06582 105 --NPTSFETEKFKAFKLAGINRVSI 127 (390)
T ss_pred --CCCcCCHHHHHHHHHCCCCEEEE
Confidence 33 3468999999999998854
No 82
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=26.31 E-value=6.1e+02 Score=24.63 Aligned_cols=74 Identities=4% Similarity=-0.177 Sum_probs=43.0
Q ss_pred EEEEEecCcchhh--hccCCCcHHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHHHHHCCCCEEEEEc
Q psy5712 164 IILFSAHSLPLRA--VNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLLVP 241 (386)
Q Consensus 164 ~ll~saHg~P~~~--v~~Gd~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~L~~~G~~~IvvlP 241 (386)
.+-+|..|.+..+ ...+....+.+.+.++.+.+ .|. ++.+.. .+- ..--.-.+.+.++.+.+.|++.+.+.|
T Consensus 126 ~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~-~G~--~v~v~~--tv~-~~~n~~ei~~~~~~~~~lGv~~i~i~p 199 (318)
T TIGR03470 126 TFSVHLDGLREHHDASVCREGVFDRAVEAIREAKA-RGF--RVTTNT--TLF-NDTDPEEVAEFFDYLTDLGVDGMTISP 199 (318)
T ss_pred EEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHH-CCC--cEEEEE--EEe-CCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 5677899986322 22233344455555555544 343 333322 111 111235688888889889999999988
Q ss_pred cc
Q psy5712 242 IA 243 (386)
Q Consensus 242 L~ 243 (386)
.+
T Consensus 200 ~~ 201 (318)
T TIGR03470 200 GY 201 (318)
T ss_pred Cc
Confidence 65
No 83
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=26.07 E-value=42 Score=31.24 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=28.1
Q ss_pred eeeccCCCCCccHHHHHHHHHHCCCCEEEEEccc
Q psy5712 210 SKVGPLPWLGPFTDDALKGYVKQGKKNFLLVPIA 243 (386)
Q Consensus 210 s~~G~~~w~~P~i~d~l~~L~~~G~~~IvvlPL~ 243 (386)
+.++ .+|..|.+.+.+++|.++|++-|++++.+
T Consensus 65 V~ls-~~~v~~~lq~~i~~le~~G~d~illlCTG 97 (221)
T PF07302_consen 65 VVLS-KKKVEPRLQACIAQLEAQGYDVILLLCTG 97 (221)
T ss_pred EEEE-HHHHHHHHHHHHHHHHHCCCCEEEEeccC
Confidence 3344 67889999999999999999999999977
No 84
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=24.93 E-value=37 Score=29.38 Aligned_cols=28 Identities=29% Similarity=0.529 Sum_probs=24.0
Q ss_pred EEEccCCCC--------ChhHHHHHHHHhcCCCCCc
Q psy5712 38 LMLNMGGPT--------HTDQVSEYLHRIMTDRDMI 65 (386)
Q Consensus 38 Llvn~GsP~--------~~~~v~~fL~~~~~d~~vi 65 (386)
++.|-|||+ +-++|++=|+.++.|+.|+
T Consensus 22 ~~~n~~GpeFYl~~~S~sW~eVEdkLraIl~d~~Vp 57 (152)
T PF15186_consen 22 MLRNGGGPEFYLENRSLSWEEVEDKLRAILEDSQVP 57 (152)
T ss_pred HHhcCCCchHHHHhccCCHHHHHHHHHHHHhCccCC
Confidence 568899999 4489999999999999863
No 85
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=24.68 E-value=5e+02 Score=23.08 Aligned_cols=78 Identities=13% Similarity=0.147 Sum_probs=42.6
Q ss_pred CCCEEEEEEecCcccccCCCCCceEEEeccCCCChHHHHHHHHHHHHHHHhCCcc---cC-CceEEEEEecCcchhhhcc
Q psy5712 104 TAERVVVIFSQVSSVKLGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPAE---VQ-KDVIILFSAHSLPLRAVNR 179 (386)
Q Consensus 104 g~~~~iv~~p~y~~~~~~~~~~~~~~~i~~~~~~p~~i~a~~~~I~~~l~~~~~~---~~-~~~~ll~saHg~P~~~v~~ 179 (386)
.+|+||+.+|+| |+.-|.....|.|++...--.+... .. ++..++++. |.|......
T Consensus 55 ~aD~iV~~fP~~------------------w~~~Pa~lK~wiD~V~~~g~ay~~~g~~l~gk~~~~~~t~-G~~~~~y~~ 115 (176)
T PRK00871 55 RADLIVWQHPMQ------------------WYSIPPLLKLWIDKVLSHGWAYGHGGTALHGKHLLWAVTT-GGGESHFEI 115 (176)
T ss_pred hCCEEEEEcChh------------------hccccHHHHHHHHHHhhCCccccCCCCCcCCCEEEEEEeC-CCCHHHHCC
Confidence 578867789983 7888889999998876532111110 11 234455555 555444443
Q ss_pred C-CCcHHHHHHHHHHHHHHhcC
Q psy5712 180 G-DPYPSEVGATVQGVMQELNN 200 (386)
Q Consensus 180 G-d~y~~~~~~~~~~l~~~lg~ 200 (386)
| ..-...+..-.+..+.-.|.
T Consensus 116 ~g~~~~~~ll~pl~~~~~~~G~ 137 (176)
T PRK00871 116 GAHPGFDVLSQPLQATALYCGL 137 (176)
T ss_pred CCcCCchHHHHHHHHHHHHcCC
Confidence 3 21123344444555555554
No 86
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=24.07 E-value=88 Score=28.68 Aligned_cols=25 Identities=12% Similarity=0.228 Sum_probs=23.2
Q ss_pred CccHHHHHHHHHHCCCCEEEEEccc
Q psy5712 219 GPFTDDALKGYVKQGKKNFLLVPIA 243 (386)
Q Consensus 219 ~P~i~d~l~~L~~~G~~~IvvlPL~ 243 (386)
+|-++..+++|.+.|++.|+++.=|
T Consensus 31 ~plIErqI~~L~e~gI~dI~IVvGY 55 (231)
T COG4750 31 EPLIERQIEQLREAGIDDITIVVGY 55 (231)
T ss_pred cccHHHHHHHHHHCCCceEEEEeee
Confidence 8999999999999999999999844
No 87
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=24.03 E-value=7.9e+02 Score=25.15 Aligned_cols=87 Identities=9% Similarity=0.030 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHHHhCCcccCCceEEEEEecCcchhhhccCCCcHHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCC
Q psy5712 138 PLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPW 217 (386)
Q Consensus 138 p~~i~a~~~~I~~~l~~~~~~~~~~~~ll~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w 217 (386)
..|++++.+.|+.....++. ...+.-|+..-|+|.-. ...++.+.++.+.+.++......++....-
T Consensus 80 ~~y~~~L~~Ei~~~~~~~~~--~~~v~~i~~gGGtPs~l------~~~~l~~ll~~l~~~~~~~~~~e~tie~np----- 146 (453)
T PRK09249 80 DPYLDALEKEIALVAALLGP--GRPVSQLHWGGGTPTFL------SPEQLRRLMALLREHFNFAPDAEISIEIDP----- 146 (453)
T ss_pred HHHHHHHHHHHHHHHHHhCC--CCceEEEEECCcccccC------CHHHHHHHHHHHHHhCCCCCCCEEEEEecC-----
Confidence 45788888887755443321 11344566566777321 256777888888777654322333322111
Q ss_pred CCccHHHHHHHHHHCCCCEEE
Q psy5712 218 LGPFTDDALKGYVKQGKKNFL 238 (386)
Q Consensus 218 ~~P~i~d~l~~L~~~G~~~Iv 238 (386)
.-..++.++.|.+.|+.+|-
T Consensus 147 -~~lt~e~l~~l~~aG~~ris 166 (453)
T PRK09249 147 -RELDLEMLDALRELGFNRLS 166 (453)
T ss_pred -CcCCHHHHHHHHHcCCCEEE
Confidence 12457899999999988765
No 88
>TIGR02017 hutG_amidohyd N-formylglutamate amidohydrolase. In some species, histidine is converted to via urocanate and then formimino-L-glutamate to glutamate in four steps, where the fourth step is conversion of N-formimino-L-glutamate to L-glutamate and formamide. In others, that pathway from formimino-L-glutamate may differ, with the next enzyme being formiminoglutamate hydrolase (HutF) yielding N-formyl-L-glutamate. This model represents the enzyme N-formylglutamate deformylase, also called N-formylglutamate amidohydrolase, which then produces glutamate.
Probab=23.57 E-value=1.1e+02 Score=29.26 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhcCCccccCceEEEEeecCCch
Q psy5712 298 LCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPL 332 (386)
Q Consensus 298 fI~ala~~I~~~l~~~~~~~~~~~~llfSaHslP~ 332 (386)
|=+++++.|.+..+.++ ..++++.||+|-
T Consensus 123 YH~al~~~L~~~~~~~g------~~~liD~HSm~s 151 (263)
T TIGR02017 123 YHAALQAEIERLRAQHG------YAVLYDAHSIRS 151 (263)
T ss_pred HHHHHHHHHHHHHHhCC------CEEEEEeccCCc
Confidence 56777777777766654 379999999985
No 89
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=23.55 E-value=1.9e+02 Score=28.61 Aligned_cols=74 Identities=12% Similarity=-0.005 Sum_probs=47.5
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHHHHHCCCCEEEE-EccccccccchhhhhhhHH
Q psy5712 180 GDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLL-VPIAFVNEHIETLHEMDIE 258 (386)
Q Consensus 180 Gd~y~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~L~~~G~~~Ivv-lPL~f~~~~~eT~~~~d~e 258 (386)
|-+|...+.+.+..++++.|++ +.....+.. .++...-++...|+..+++ +|.-|..+ .|+.+--|++
T Consensus 261 ~~~~~~~l~~~l~~~A~~~~Ip--~Q~~~~~~~--------gtDa~~~~~~~~Gi~t~~i~iP~Ry~Hs-~e~~~~~D~~ 329 (343)
T TIGR03106 261 SGPFDYHLTRKLIRLCQDHGIP--HRRDVFRYY--------RSDAASAVEAGHDIRTALVTFGLDASHG-YERTHIDALE 329 (343)
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--cEEEecCCC--------CChHHHHHHcCCCCCEEEeeccccchhh-hhhccHHHHH
Confidence 4456788888888899988875 222211111 3455556667789987765 56667666 7887777776
Q ss_pred HHHHHh
Q psy5712 259 YCHDLG 264 (386)
Q Consensus 259 ~~~~~~ 264 (386)
.+..+.
T Consensus 330 ~~~~Ll 335 (343)
T TIGR03106 330 ALANLL 335 (343)
T ss_pred HHHHHH
Confidence 554443
No 90
>PRK03906 mannonate dehydratase; Provisional
Probab=23.44 E-value=1.5e+02 Score=29.98 Aligned_cols=87 Identities=9% Similarity=0.094 Sum_probs=50.8
Q ss_pred CCCCCccHHHHHHHHHHCCCCEEEEEcc-ccccccchhhhhhhHHHHHHHhccccceeEEEecCCCCCCCcceEEecCCC
Q psy5712 215 LPWLGPFTDDALKGYVKQGKKNFLLVPI-AFVNEHIETLHEMDIEYCHDLGKEVSVFSMYLFTGPGSPSNISWSLIDRWS 293 (386)
Q Consensus 215 ~~w~~P~i~d~l~~L~~~G~~~IvvlPL-~f~~~~~eT~~~~d~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~I~~~~ 293 (386)
++|.+|.-...|+.+.+-|++.||..-- .+.. -.=++.+ +...++..++.|+ ++..+.+-+... .+--...
T Consensus 5 ~rw~g~~d~~~l~~~rQ~G~~~iv~~l~~~~~g-~~W~~~~--i~~~~~~ie~~Gl-~~~vvEs~pv~~----~Ik~g~~ 76 (385)
T PRK03906 5 WRWFGPNDPVTLEDIRQPGATGIVTALHDIPVG-EVWPVEE--ILARKAEIEAAGL-EWSVVESVPVHE----DIKTGTP 76 (385)
T ss_pred EEEeCCCCcchHHHHhcCCCCceeecCCCCCCC-CCCCHHH--HHHHHHHHHHcCC-eEEEEeCCCccH----HHHcCCC
Confidence 5888998888999999999999985321 1222 1122222 2334566666776 355444311111 1222355
Q ss_pred CCHHHHHHHHHHHHHH
Q psy5712 294 THPLLCKVFAERIQEE 309 (386)
Q Consensus 294 d~p~fI~ala~~I~~~ 309 (386)
+.+.+|+...+.|++.
T Consensus 77 ~rd~~ie~y~~sirnl 92 (385)
T PRK03906 77 NRDRYIENYKQTLRNL 92 (385)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 6667788877777665
No 91
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=23.18 E-value=3.7e+02 Score=25.23 Aligned_cols=25 Identities=12% Similarity=0.032 Sum_probs=22.1
Q ss_pred eccCCCChHHHHHHHHHHHHHHHhC
Q psy5712 131 IDRWSTHPLLCKVFAERIQEELKQF 155 (386)
Q Consensus 131 i~~~~~~p~~i~a~~~~I~~~l~~~ 155 (386)
=+++|.+|.....+++.|.++|.+.
T Consensus 94 dPH~Wldp~n~~~~a~~I~~~L~~~ 118 (264)
T cd01020 94 NPHLWYDPETMSKVANALADALVKA 118 (264)
T ss_pred CCceecCHhHHHHHHHHHHHHHHHh
Confidence 4568999999999999999999875
No 92
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.10 E-value=7.5e+02 Score=24.55 Aligned_cols=56 Identities=13% Similarity=0.183 Sum_probs=37.2
Q ss_pred cceEEecCCCCCHHHHHHHHHHHHHHHhcCCccccCceEEEEeecCCchhhhccCCCCHHHHHHHHH
Q psy5712 284 ISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQ 350 (386)
Q Consensus 284 ~~~~~I~~~~d~p~fI~ala~~I~~~l~~~~~~~~~~~~llfSaHslP~~~i~~GDpY~~q~~~t~~ 350 (386)
+++.+|+.+||++.-++++++.++.. + .. .=|.-||-++..-.+ .|-..++++-.+
T Consensus 258 iey~LIpGvNDs~e~a~~La~~l~~l----~----~~-VnLIPynp~~~~~~~--~ps~e~i~~f~~ 313 (345)
T PRK14457 258 FEYILLGGVNDLPEHAEELANLLRGF----Q----SH-VNLIPYNPIDEVEFQ--RPSPKRIQAFQR 313 (345)
T ss_pred EEEEEECCcCCCHHHHHHHHHHHhcC----C----Ce-EEEecCCCCCCCCCC--CCCHHHHHHHHH
Confidence 56788999999999999999988643 1 12 346788988753222 244555554433
No 93
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=23.06 E-value=3.7e+02 Score=25.59 Aligned_cols=74 Identities=16% Similarity=0.206 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHH---HHHCCCCEEEEEccccccccchhhhhhhHHHH
Q psy5712 184 PSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKG---YVKQGKKNFLLVPIAFVNEHIETLHEMDIEYC 260 (386)
Q Consensus 184 ~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~---L~~~G~~~IvvlPL~f~~~~~eT~~~~d~e~~ 260 (386)
.+|..+.++.+.+..+. ++.+- ..+| ...++++++. ..+.|++.++++|++|..-+-+.+ +++.
T Consensus 53 ~~Er~~~~~~~~~~~~~--~~~vi--~gv~-----~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i----~~~~ 119 (292)
T PRK03170 53 HEEHEELIRAVVEAVNG--RVPVI--AGTG-----SNSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEGL----YQHF 119 (292)
T ss_pred HHHHHHHHHHHHHHhCC--CCcEE--eecC-----CchHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHH----HHHH
Confidence 45666666766666543 22222 2233 4567777764 455699999999877533222222 2455
Q ss_pred HHHhccccce
Q psy5712 261 HDLGKEVSVF 270 (386)
Q Consensus 261 ~~~~~~~g~~ 270 (386)
+++++..+..
T Consensus 120 ~~ia~~~~~p 129 (292)
T PRK03170 120 KAIAEATDLP 129 (292)
T ss_pred HHHHhcCCCC
Confidence 6666554443
No 94
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=22.78 E-value=3.6e+02 Score=21.78 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhcC-CCCeEEEEeCCCCCCCC
Q psy5712 343 SEVGATVQGVMQELNN-CNPYHLVWQSKVGPLPW 375 (386)
Q Consensus 343 ~q~~~t~~~l~~~l~~-~~~~~lafQSr~G~~~W 375 (386)
.-..+-+++|.+.||. .++..+.|+- ..+..|
T Consensus 76 ~l~~~i~~~l~~~lgi~~~rv~I~f~~-~~~~~w 108 (116)
T PTZ00397 76 SIAAAITKILASHLKVKSERVYIEFKD-CSAQNW 108 (116)
T ss_pred HHHHHHHHHHHHHhCcCcccEEEEEEE-CChhhe
Confidence 3344455566666775 4688888875 344444
No 95
>PRK10481 hypothetical protein; Provisional
Probab=22.46 E-value=57 Score=30.45 Aligned_cols=33 Identities=15% Similarity=0.054 Sum_probs=24.3
Q ss_pred eeeccCCCCCccHHHHHHHHHHCCCCEEEEEccc
Q psy5712 210 SKVGPLPWLGPFTDDALKGYVKQGKKNFLLVPIA 243 (386)
Q Consensus 210 s~~G~~~w~~P~i~d~l~~L~~~G~~~IvvlPL~ 243 (386)
+.++ .+|..|.+.+.+++|.++|++-|+++|.+
T Consensus 68 v~~s-~~~v~~~lq~~i~~l~~~g~d~ivl~Ctg 100 (224)
T PRK10481 68 VHVS-KQKVERDLQSVIEVLDNQGYDVILLLCTG 100 (224)
T ss_pred EEEE-HHHHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 3344 56777888888888888888888887765
No 96
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=22.25 E-value=7e+02 Score=23.89 Aligned_cols=71 Identities=11% Similarity=0.194 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHHH---HHHCCCCEEEEEccccccccchhhhhhhHHHH
Q psy5712 184 PSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKG---YVKQGKKNFLLVPIAFVNEHIETLHEMDIEYC 260 (386)
Q Consensus 184 ~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~~---L~~~G~~~IvvlPL~f~~~~~eT~~~~d~e~~ 260 (386)
.+|..+.++.+.+..+. ++.+- ..+| ..+++++++. ..+.|++-++++|++|..-+-+-+ .++.
T Consensus 52 ~~Er~~l~~~~~~~~~g--~~pvi--~gv~-----~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l----~~~f 118 (294)
T TIGR02313 52 LEERKQAIENAIDQIAG--RIPFA--PGTG-----ALNHDETLELTKFAEEAGADAAMVIVPYYNKPNQEAL----YDHF 118 (294)
T ss_pred HHHHHHHHHHHHHHhCC--CCcEE--EECC-----cchHHHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHH----HHHH
Confidence 35666666666665543 23322 2234 5778887764 345699999999987543222222 2445
Q ss_pred HHHhccc
Q psy5712 261 HDLGKEV 267 (386)
Q Consensus 261 ~~~~~~~ 267 (386)
+.+++..
T Consensus 119 ~~ia~a~ 125 (294)
T TIGR02313 119 AEVADAV 125 (294)
T ss_pred HHHHHhc
Confidence 6666554
No 97
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=22.00 E-value=1.8e+02 Score=29.54 Aligned_cols=89 Identities=9% Similarity=0.093 Sum_probs=51.0
Q ss_pred CCCCCccHHHHHHHHHHCCCCEEEEEccccccccchhhhhhhHHHHHHHhccccceeEEEecCCCCCCCcceEEecCCCC
Q psy5712 215 LPWLGPFTDDALKGYVKQGKKNFLLVPIAFVNEHIETLHEMDIEYCHDLGKEVSVFSMYLFTGPGSPSNISWSLIDRWST 294 (386)
Q Consensus 215 ~~w~~P~i~d~l~~L~~~G~~~IvvlPL~f~~~~~eT~~~~d~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~I~~~~d 294 (386)
++|.+|.=.-.|+.+.+.|++.||..---+.....=++.+ ++..++..++.|+ ++..+.+-+... .+--...+
T Consensus 5 ~rw~gp~d~v~l~~irQ~G~~giV~al~~~p~gevW~~~~--i~~~k~~ie~~GL-~~~vvEs~pv~e----~Ik~g~~~ 77 (394)
T TIGR00695 5 WRWYGPNDPVSLEDVRQAGATGIVTALHHIPNGEVWEKEE--IRKRKEYIESAGL-HWSVVESVPVHE----AIKTGTGN 77 (394)
T ss_pred eeeeCCCCcchHHHHhhcCCcceeecCCCCCCCCCCCHHH--HHHHHHHHHHcCC-eEEEEeCCCccH----HHHcCCCc
Confidence 5788887677889999999999985421111111122222 3434566666776 355544311111 12223556
Q ss_pred CHHHHHHHHHHHHHHH
Q psy5712 295 HPLLCKVFAERIQEEL 310 (386)
Q Consensus 295 ~p~fI~ala~~I~~~l 310 (386)
.+.+|+.+.+.|++.-
T Consensus 78 rd~~Ienyk~~irNla 93 (394)
T TIGR00695 78 YGRWIENYKQTLRNLA 93 (394)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6778888888887653
No 98
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=21.14 E-value=7.2e+02 Score=23.62 Aligned_cols=74 Identities=12% Similarity=0.100 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCceeEeeeeeccCCCCCccHHHHHH---HHHHCCCCEEEEEccccccccchhhhhhhHHHH
Q psy5712 184 PSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALK---GYVKQGKKNFLLVPIAFVNEHIETLHEMDIEYC 260 (386)
Q Consensus 184 ~~~~~~~~~~l~~~lg~~~~~~~~~qs~~G~~~w~~P~i~d~l~---~L~~~G~~~IvvlPL~f~~~~~eT~~~~d~e~~ 260 (386)
.+|..+.++...+..+. ++.+-. .+| ..+++++++ ...+.|++-++++|++|..-+-+.+ .+++
T Consensus 53 ~~Er~~~~~~~~~~~~~--~~~via--gv~-----~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i----~~~~ 119 (288)
T cd00954 53 VEERKQIAEIVAEAAKG--KVTLIA--HVG-----SLNLKESQELAKHAEELGYDAISAITPFYYKFSFEEI----KDYY 119 (288)
T ss_pred HHHHHHHHHHHHHHhCC--CCeEEe--ccC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHH----HHHH
Confidence 34555566666665543 232221 123 466777776 4466799999999887543222222 2455
Q ss_pred HHHhccc-cce
Q psy5712 261 HDLGKEV-SVF 270 (386)
Q Consensus 261 ~~~~~~~-g~~ 270 (386)
+.+++.. +..
T Consensus 120 ~~v~~a~~~lp 130 (288)
T cd00954 120 REIIAAAASLP 130 (288)
T ss_pred HHHHHhcCCCC
Confidence 6666655 444
No 99
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=21.06 E-value=74 Score=30.75 Aligned_cols=64 Identities=8% Similarity=0.254 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHHHHH--hcCCccccCceEEEEeecCCchhhhc----cC-------CCCHHHHHHHHHHHHHH
Q psy5712 291 RWSTHPLLCKVFAERIQEEL--KQFPAEVQKDVIILFSAHSLPLRAVN----RG-------DPYPSEVGATVQGVMQE 355 (386)
Q Consensus 291 ~~~d~p~fI~ala~~I~~~l--~~~~~~~~~~~~llfSaHslP~~~i~----~G-------DpY~~q~~~t~~~l~~~ 355 (386)
++=-+|.-++.|.++=-..+ +... +.+++..+||+|||+|....+ +| =||...++..++.+.+.
T Consensus 39 ~iVHN~~Vv~~L~~~Gv~~v~~~~~~-~v~~~~~ViirAHGv~~~~~~~~~~~g~~viDaTCP~V~k~~~~v~~~~~~ 115 (281)
T PRK12360 39 PLIHNNQVVSDLEEKGVKTIEESEID-SLKEGDVVIIRSHGVSKKVYKDLKDKGLEIIDATCPFVKKIQNIVEEYYNK 115 (281)
T ss_pred CCcCCHHHHHHHHHCcCEEECcCchh-hCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEeCCCccchHHHHHHHHHHhC
Confidence 35557877777765422111 1111 112233799999999988754 34 27888888887777664
No 100
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=20.82 E-value=6.8e+02 Score=23.22 Aligned_cols=84 Identities=12% Similarity=0.168 Sum_probs=53.3
Q ss_pred ceEEEeccCCCChHHHHHHHHHHHHHHHhCCcccCCceEEEEEecCcchhhhccCCCcHHHHHHHHHHHHHHhcCCCCce
Q psy5712 126 ISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYH 205 (386)
Q Consensus 126 ~~~~~i~~~~~~p~~i~a~~~~I~~~l~~~~~~~~~~~~ll~saHg~P~~~v~~Gd~y~~~~~~~~~~l~~~lg~~~~~~ 205 (386)
+++..+..-+....+.+.+.+.+++. .- + +++| ||-.......-.+.+.+++|+. .+.
T Consensus 59 ipl~~~~~~~~~e~~~e~l~~~l~~~----gv----~-~vv~------------GdI~s~~qr~~~e~v~~~lgl~-~~~ 116 (223)
T TIGR00290 59 IPLIKLYTEGTEEDEVEELKGILHTL----DV----E-AVVF------------GAIYSEYQKTRIERVCRELGLK-SFA 116 (223)
T ss_pred CCeEEeecCCCccHHHHHHHHHHHHc----CC----C-EEEE------------CCcccHHHHHHHHHHHHhcCCE-Eec
Confidence 33433444445566777666655442 11 1 4444 8888777777888899999874 111
Q ss_pred eEeeeeeccCCCCCccHHHHHHHHHHCCCCEEEEEc
Q psy5712 206 LVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLLVP 241 (386)
Q Consensus 206 ~~~qs~~G~~~w~~P~i~d~l~~L~~~G~~~IvvlP 241 (386)
-=| +=..++.+++|.+.|++-+|+-.
T Consensus 117 ---------PLW-~~~~~~ll~e~i~~G~~aiIv~v 142 (223)
T TIGR00290 117 ---------PLW-HRDPEKLMEEFVEEKFEARIIAV 142 (223)
T ss_pred ---------ccc-CCCHHHHHHHHHHcCCeEEEEEE
Confidence 134 34456799999999999888543
No 101
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=20.48 E-value=94 Score=23.63 Aligned_cols=21 Identities=24% Similarity=0.525 Sum_probs=18.9
Q ss_pred HHHHHHHHHCCCCEEEEEccc
Q psy5712 223 DDALKGYVKQGKKNFLLVPIA 243 (386)
Q Consensus 223 ~d~l~~L~~~G~~~IvvlPL~ 243 (386)
+..++++++.|+++|.-+||+
T Consensus 27 ~~~~~~~~~~G~~~V~yLPLA 47 (79)
T PF12996_consen 27 RSFVEEYRNLGAENVFYLPLA 47 (79)
T ss_pred HHHHHHHHHcCCCCEEEcccc
Confidence 468899999999999999997
No 102
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=20.44 E-value=95 Score=29.99 Aligned_cols=64 Identities=22% Similarity=0.290 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHH-HHHHhcCCccccCceEEEEeecCCchhhhc----cC-------CCCHHHHHHHHHHHHHH
Q psy5712 291 RWSTHPLLCKVFAERI-QEELKQFPAEVQKDVIILFSAHSLPLRAVN----RG-------DPYPSEVGATVQGVMQE 355 (386)
Q Consensus 291 ~~~d~p~fI~ala~~I-~~~l~~~~~~~~~~~~llfSaHslP~~~i~----~G-------DpY~~q~~~t~~~l~~~ 355 (386)
++=-+|.-++.|.++= ....+... +.+++..+||+|||+|....+ +| =||...++..++...+.
T Consensus 37 ~iIHN~~Vv~~L~~~Gv~~~v~~~~-~v~~~~~ViirAHGv~~~~~~~~~~~gl~viDaTCP~V~kv~~~v~~~~~~ 112 (280)
T TIGR00216 37 PIVHNPQVVERLRERGVFFFLEDLD-EVAAGDTVIIRAHGVPPEVREELEKKGLEVIDATCPLVTKVHNAVKKYAKE 112 (280)
T ss_pred CCccCHHHHHHHHHCCCEEeecCcc-cCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEeCCCcccHHHHHHHHHHHhC
Confidence 3555787777776542 11112211 112234799999999988754 34 27888888887777664
Done!