RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5712
(386 letters)
>gnl|CDD|216106 pfam00762, Ferrochelatase, Ferrochelatase.
Length = 311
Score = 200 bits (511), Expect = 1e-61
Identities = 85/288 (29%), Positives = 131/288 (45%), Gaps = 62/288 (21%)
Query: 34 KTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPEAWSLHCQEKNARSTK------EIP 87
KTA+L+LN+GGP + V +L ++DR +I+LP L R K +I
Sbjct: 1 KTAVLLLNLGGPESPEDVRPFLRNFLSDRRVIELPLQLWLAGIILPERPKKSAEAYRKIG 60
Query: 88 G-------NRR-----------WVSDIEVDSA-----PGTA-----------ERVVVI-- 111
G R +D++V A P +R+VV+
Sbjct: 61 GGSPLNVITRAQAEALQKRLGERGADVKVYLAMRYGPPSIEDALEELKADGVDRIVVLPL 120
Query: 112 ------------FSQVSSVKLGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEV 159
+++ +I R+ HP + A+ I+E L +
Sbjct: 121 YPQYSASTTGSYLDELARALKKGRPAPEVRVIRRYYDHPGYIEALADSIREALAKLGDPD 180
Query: 160 QKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLG 219
+LFSAH LP R + +GDPYP++ T + V + L + Y L +QS+ GP PWL
Sbjct: 181 ----RLLFSAHGLPERYIKKGDPYPAQCEETARLVAEALG-LSDYRLAFQSRFGPEPWLE 235
Query: 220 PFTDDALKGYVKQGKKNFLLVPIAFVNEHIETLHEMDIEY---CHDLG 264
P+TDD L+ K+G K ++VPI FV++H+ETL+E+DIEY + G
Sbjct: 236 PYTDDTLEELAKEGVKKVVVVPIGFVSDHLETLYELDIEYRELAEEAG 283
Score = 123 bits (312), Expect = 1e-32
Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 283 NISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYP 342
+I R+ HP + A+ I+E L + +LFSAH LP R + +GDPYP
Sbjct: 146 APEVRVIRRYYDHPGYIEALADSIREALAKLGDPD----RLLFSAHGLPERYIKKGDPYP 201
Query: 343 SEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALK 385
++ T + V + L + Y L +QS+ GP PWL P+TDD L+
Sbjct: 202 AQCEETARLVAEAL-GLSDYRLAFQSRFGPEPWLEPYTDDTLE 243
>gnl|CDD|223353 COG0276, HemH, Protoheme ferro-lyase (ferrochelatase) [Coenzyme
metabolism].
Length = 320
Score = 183 bits (466), Expect = 7e-55
Identities = 84/285 (29%), Positives = 127/285 (44%), Gaps = 60/285 (21%)
Query: 31 SKPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPEAWSLH---------------- 74
KTA+L+LN+GGP + V YL ++DR +I+LP
Sbjct: 2 KMKKTAVLLLNLGGPETLEDVRPYLKNFLSDRRVIELPRPLWYPLAGIILPLRLKKVAKN 61
Query: 75 ---------------------CQEKNARSTKEIPGNRRWVSDIEVDSAPGTA----ERVV 109
+ + K R IE ++ ER+V
Sbjct: 62 YESIGGKSPLNVITRAQAAALEERLDLPDFKVYLAMRYGPPFIE-EAVEELKKDGVERIV 120
Query: 110 VI--FSQVSSVKLGS------------PSNISWSLIDRWSTHPLLCKVFAERIQEELKQF 155
V+ + Q SS GS S I + PL + A+ I+E+L +
Sbjct: 121 VLPLYPQYSSSTTGSYVDELARALKELRGQPKISTIPDYYDEPLYIEALADSIREKLAKH 180
Query: 156 PAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNC-NPYHLVWQSKVGP 214
P + D ++LFSAH LP R ++ GDPYP + T + + + L Y L +QS+ GP
Sbjct: 181 PRD---DDVLLFSAHGLPKRYIDEGDPYPQQCQETTRLIAEALGLPEEEYDLTFQSRFGP 237
Query: 215 LPWLGPFTDDALKGYVKQGKKNFLLVPIAFVNEHIETLHEMDIEY 259
PWL P+TDD L+ ++G K ++VPI FV++H+ETL+E+D EY
Sbjct: 238 EPWLQPYTDDLLEELGEKGVKKIIVVPIGFVSDHLETLYEIDHEY 282
Score = 118 bits (299), Expect = 1e-30
Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 39/177 (22%)
Query: 220 PFTDDALKGYVKQGKKNFLLVPI----------AFVNEHIETLHEMDIEYCHDLGKEVSV 269
PF ++A++ K G + +++P+ ++V+E L E+ +
Sbjct: 102 PFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVDELARALKELRGQ----------- 150
Query: 270 FSMYLFTGPGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHS 329
S I + PL + A+ I+E+L + P + D ++LFSAH
Sbjct: 151 --------------PKISTIPDYYDEPLYIEALADSIREKLAKHPRD---DDVLLFSAHG 193
Query: 330 LPLRAVNRGDPYPSEVGATVQGVMQELNNC-NPYHLVWQSKVGPLPWLGPFTDDALK 385
LP R ++ GDPYP + T + + + L Y L +QS+ GP PWL P+TDD L+
Sbjct: 194 LPKRYIDEGDPYPQQCQETTRLIAEALGLPEEEYDLTFQSRFGPEPWLQPYTDDLLE 250
>gnl|CDD|238240 cd00419, Ferrochelatase_C, Ferrochelatase, C-terminal domain:
Ferrochelatase (protoheme ferrolyase or HemH) is the
terminal enzyme of the heme biosynthetic pathway. It
catalyzes the insertion of ferrous iron into the
protoporphyrin IX ring yielding protoheme. This enzyme
is ubiquitous in nature and widely distributed in
bacteria and eukaryotes. Recently, some archaeal members
have been identified. The oligomeric state of these
enzymes varies depending on the presence of a
dimerization motif at the C-terminus.
Length = 135
Score = 160 bits (408), Expect = 1e-48
Identities = 53/119 (44%), Positives = 78/119 (65%), Gaps = 4/119 (3%)
Query: 142 KVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNN- 200
+ A+ I+E L + P ++ +LFSAH LP+R + +GDPYP + T + V + L
Sbjct: 1 EALADHIREALAELP---REKDRLLFSAHGLPVRDIKKGDPYPDQCEETARLVAERLGLP 57
Query: 201 CNPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLLVPIAFVNEHIETLHEMDIEY 259
+ Y L +QS+ GP WL P TDDAL+ K+G KN ++VPI FV++H+ETL+E+DIEY
Sbjct: 58 FDEYELAYQSRFGPGEWLEPSTDDALEELAKEGVKNVVVVPIGFVSDHLETLYELDIEY 116
Score = 113 bits (284), Expect = 2e-30
Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
Query: 300 KVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNN- 358
+ A+ I+E L + P ++ +LFSAH LP+R + +GDPYP + T + V + L
Sbjct: 1 EALADHIREALAELP---REKDRLLFSAHGLPVRDIKKGDPYPDQCEETARLVAERLGLP 57
Query: 359 CNPYHLVWQSKVGPLPWLGPFTDDALK 385
+ Y L +QS+ GP WL P TDDAL+
Sbjct: 58 FDEYELAYQSRFGPGEWLEPSTDDALE 84
>gnl|CDD|232827 TIGR00109, hemH, ferrochelatase. Human ferrochelatase, found at
the mitochondrial inner membrane inner surface, was
shown in an active recombinant form to be a homodimer.
This contrasts to an earlier finding by gel filtration
that overexpressed E. coli ferrochelatase runs as a
monomer [Biosynthesis of cofactors, prosthetic groups,
and carriers, Heme, porphyrin, and cobalamin].
Length = 322
Score = 163 bits (413), Expect = 3e-47
Identities = 87/286 (30%), Positives = 137/286 (47%), Gaps = 59/286 (20%)
Query: 31 SKPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQL-------PEAWSLHC--QEKNAR 81
+ KT +L++N+GGP ++V +L ++ D +I + P A + K A+
Sbjct: 2 KRKKTGVLLMNLGGPDKLEEVERFLKQLFADPRIIDISRAKWRKPLAKMILPLRSPKIAK 61
Query: 82 STKEIPG---------------NRRWVSDIEVDSA-------PGTAERV----------V 109
+ + I G +R ++I+ P T E V
Sbjct: 62 NYEAIGGGSPLLQITEQQAHALEKRLPNEIDFKVYIAMRYGEPFTEEAVKELLKDGVERA 121
Query: 110 VIFS---QVSSVKLGSPSN-------------ISWSLIDRWSTHPLLCKVFAERIQEELK 153
V+ SS GS N + S+I+ W +P K A+ I+E L
Sbjct: 122 VVLPLYPHFSSSTTGSSFNELAEALKKLRSLRPTISVIESWYDNPKYIKALADSIKETLA 181
Query: 154 QFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVG 213
FP + ++LFSAH LP V+ GDPYP+E AT + + ++L N Y L WQS+VG
Sbjct: 182 SFPE--PDNAVLLFSAHGLPQSYVDEGDPYPAECEATTRLIAEKLGFPNEYRLTWQSRVG 239
Query: 214 PLPWLGPFTDDALKGYVKQGKKNFLLVPIAFVNEHIETLHEMDIEY 259
P PWLGP+T++ L+ +QG ++ ++VPI F +H+ETL+E+D EY
Sbjct: 240 PEPWLGPYTEELLEKLGEQGVQHIVVVPIGFTADHLETLYEIDEEY 285
Score = 117 bits (295), Expect = 4e-30
Identities = 44/102 (43%), Positives = 64/102 (62%), Gaps = 2/102 (1%)
Query: 284 ISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPS 343
+ S+I+ W +P K A+ I+E L FP + ++LFSAH LP V+ GDPYP+
Sbjct: 154 PTISVIESWYDNPKYIKALADSIKETLASFPE--PDNAVLLFSAHGLPQSYVDEGDPYPA 211
Query: 344 EVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALK 385
E AT + + ++L N Y L WQS+VGP PWLGP+T++ L+
Sbjct: 212 ECEATTRLIAEKLGFPNEYRLTWQSRVGPEPWLGPYTEELLE 253
>gnl|CDD|234585 PRK00035, hemH, ferrochelatase; Reviewed.
Length = 333
Score = 158 bits (401), Expect = 4e-45
Identities = 52/132 (39%), Positives = 78/132 (59%), Gaps = 2/132 (1%)
Query: 129 SLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVG 188
I + HP + AE I+E L + + + D + LFSAH LP R +++GDPY +
Sbjct: 157 RFIRSYYDHPGYIEALAESIREALAKHGEDPEPDRL-LFSAHGLPQRYIDKGDPYQQQCE 215
Query: 189 ATVQGVMQELNNC-NPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLLVPIAFVNE 247
T + + + L Y L +QS+ GP PWL P+TDD L+ ++G K ++VP FV++
Sbjct: 216 ETARLLAEALGLPDEDYDLTYQSRFGPEPWLEPYTDDTLEELAEKGVKKVVVVPPGFVSD 275
Query: 248 HIETLHEMDIEY 259
H+ETL E+DIEY
Sbjct: 276 HLETLEEIDIEY 287
Score = 115 bits (291), Expect = 2e-29
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 287 SLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVG 346
I + HP + AE I+E L + + + D + LFSAH LP R +++GDPY +
Sbjct: 157 RFIRSYYDHPGYIEALAESIREALAKHGEDPEPDRL-LFSAHGLPQRYIDKGDPYQQQCE 215
Query: 347 ATVQGVMQELNNC-NPYHLVWQSKVGPLPWLGPFTDDALK 385
T + + + L Y L +QS+ GP PWL P+TDD L+
Sbjct: 216 ETARLLAEALGLPDEDYDLTYQSRFGPEPWLEPYTDDTLE 255
Score = 41.3 bits (98), Expect = 5e-04
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 31 SKPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPEAW 71
+ PK A+L+LN+GGP + V +L ++DR +I LP
Sbjct: 2 AMPKDAVLLLNLGGPETPEDVRPFLKNFLSDRRVIDLPRPL 42
>gnl|CDD|178068 PLN02449, PLN02449, ferrochelatase.
Length = 485
Score = 124 bits (312), Expect = 2e-31
Identities = 56/140 (40%), Positives = 85/140 (60%), Gaps = 6/140 (4%)
Query: 124 SNISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNR-GDP 182
N+ ++I W K A+ I++EL +F ++V I FSAH +P+ V GDP
Sbjct: 240 VNMQHTVIPSWYQREGYVKAMADLIKKELAKFSD--PEEVHIFFSAHGVPVSYVEEAGDP 297
Query: 183 YPSEVGATVQGVMQEL---NNCNPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLL 239
Y +++ V +M+EL N + L +QS+VGP+ WL P+TD+ + K+G K+ L
Sbjct: 298 YKAQMEECVDLIMEELKARGILNRHTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSLLA 357
Query: 240 VPIAFVNEHIETLHEMDIEY 259
VPI+FV+EHIETL E+D+EY
Sbjct: 358 VPISFVSEHIETLEEIDMEY 377
Score = 80.7 bits (199), Expect = 1e-16
Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 6/108 (5%)
Query: 282 SNISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNR-GDP 340
N+ ++I W K A+ I++EL +F ++V I FSAH +P+ V GDP
Sbjct: 240 VNMQHTVIPSWYQREGYVKAMADLIKKELAKFSD--PEEVHIFFSAHGVPVSYVEEAGDP 297
Query: 341 YPSEVGATVQGVMQEL---NNCNPYHLVWQSKVGPLPWLGPFTDDALK 385
Y +++ V +M+EL N + L +QS+VGP+ WL P+TD+ +
Sbjct: 298 YKAQMEECVDLIMEELKARGILNRHTLAYQSRVGPVEWLKPYTDETIV 345
Score = 39.8 bits (93), Expect = 0.002
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 1 SQAFRKPWSRLFSIQVCNSQASPSTGAKDS----SKPKTAILMLNMGGPTHTDQVSEYLH 56
S R + + + A S+ K +L+LN+GGP D V +L+
Sbjct: 53 SLRLRANLAASSTS-ASAVDSPDDDEAVADHPKVSEEKVGVLLLNLGGPETLDDVQPFLY 111
Query: 57 RIMTDRDMIQLP 68
+ D D+I+LP
Sbjct: 112 NLFADPDIIRLP 123
>gnl|CDD|183526 PRK12435, PRK12435, ferrochelatase; Provisional.
Length = 311
Score = 94.3 bits (235), Expect = 8e-22
Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 11/152 (7%)
Query: 119 KLGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVN 178
KLG P+ S I+ W P + +A++I+E Q P E ++ +++ SAHSLP + +
Sbjct: 134 KLGGPTITS---IESWYDEPKFIQYWADQIKETFAQIPEEEREKAVLIVSAHSLPEKIIA 190
Query: 179 RGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVG--PLPWLGPFTDDALKG-YVKQGKK 235
GDPYP ++ T ++ E N Y + WQS+ G P PWLGP D + Y + G K
Sbjct: 191 AGDPYPDQLEETAD-LIAEQANVEHYAIGWQSE-GNTPDPWLGPDVQDLTRDLYEEHGYK 248
Query: 236 NFLLVPIAFVNEHIETLHEMDIE---YCHDLG 264
+F+ P+ FV EH+E L++ D E ++G
Sbjct: 249 SFIYTPVGFVAEHLEVLYDNDYECKVVTDEIG 280
Score = 69.2 bits (170), Expect = 4e-13
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 289 IDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGAT 348
I+ W P + +A++I+E Q P E ++ +++ SAHSLP + + GDPYP ++ T
Sbjct: 143 IESWYDEPKFIQYWADQIKETFAQIPEEEREKAVLIVSAHSLPEKIIAAGDPYPDQLEET 202
Query: 349 VQGVMQELNNCNPYHLVWQSKVG--PLPWLGP 378
++ E N Y + WQS+ G P PWLGP
Sbjct: 203 AD-LIAEQANVEHYAIGWQSE-GNTPDPWLGP 232
>gnl|CDD|239503 cd03409, Chelatase_Class_II, Class II Chelatase: a family of
ATP-independent monomeric or homodimeric enzymes that
catalyze the insertion of metal into protoporphyrin
rings. This family includes protoporphyrin IX
ferrochelatase (HemH), sirohydrochlorin ferrochelatase
(SirB) and the cobaltochelatases, CbiK and CbiX. HemH
and SirB are involved in heme and siroheme biosynthesis,
respectively, while the cobaltochelatases are associated
with cobalamin biosynthesis. Excluded from this family
are the ATP-dependent heterotrimeric chelatases (class
I) and the multifunctional homodimeric enzymes with
dehydrogenase and chelatase activities (class III).
Length = 101
Score = 68.9 bits (169), Expect = 1e-14
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 13/95 (13%)
Query: 165 ILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDD 224
+L H P + DPY ++ A + E PY++ +QS LGP T++
Sbjct: 2 LLVVGHGSPYK-----DPYKKDIEAQAHN-LAESLPDFPYYVGFQSG------LGPDTEE 49
Query: 225 ALKGYVKQGKKNFLLVPIAFVNEHIETLHEMDIEY 259
A++ ++G + ++VP+A V+ E +++D E
Sbjct: 50 AIRELAEEGYQRVVIVPLAPVS-GDEVFYDIDSEI 83
Score = 44.7 bits (106), Expect = 5e-06
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 12/64 (18%)
Query: 323 ILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDD 382
+L H P + DPY ++ A + E PY++ +QS LGP T++
Sbjct: 2 LLVVGHGSPYK-----DPYKKDIEAQAHN-LAESLPDFPYYVGFQSG------LGPDTEE 49
Query: 383 ALKG 386
A++
Sbjct: 50 AIRE 53
>gnl|CDD|239504 cd03411, Ferrochelatase_N, Ferrochelatase, N-terminal domain:
Ferrochelatase (protoheme ferrolyase or HemH) is the
terminal enzyme of the heme biosynthetic pathway. It
catalyzes the insertion of ferrous iron into the
protoporphyrin IX ring yielding protoheme. This enzyme
is ubiquitous in nature and widely distributed in
bacteria and eukaryotes. Recently, some archaeal
members have been identified. The oligomeric state of
these enzymes varies depending on the presence of a
dimerization motif at the C-terminus.
Length = 159
Score = 47.6 bits (114), Expect = 1e-06
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 35 TAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLP 68
TA+L++N+GGP + V +L ++DR +I+LP
Sbjct: 1 TAVLLVNLGGPESLEDVRPFLKNFLSDRRVIELP 34
>gnl|CDD|153119 cd07910, MiaE, MiaE tRNA-modifying nonheme diiron monooxygenase,
ferritin-like diiron-binding domain. MiaE is a nonheme
diiron monooxygenase that catalyzes the
posttranscriptional allylic hydroxylation of a modified
nucleoside in tRNA called 2-methylthio-N-6-isopentenyl
adenosine (ms2i6A). ms2i6A is found at position 37,
next to the anticodon at the 3' position in almost all
eukaryotic and bacterial tRNA's that read codons
beginning with uridine. The miaE gene is absent in
Escherichia coli, a finding consistent with the absence
of the hydroxylated derivative of ms2i6A in this
species.
Length = 180
Score = 31.0 bits (71), Expect = 0.64
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 13/79 (16%)
Query: 129 SLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVG 188
SLI R+ P L + ++ +EEL+ F + V+ + +PL DPY
Sbjct: 39 SLIFRYPEKPELVEAMSDLAREELQHF-----EQVLKIMKKRGIPLGPD-SKDPY----- 87
Query: 189 ATVQGVMQELNNCNPYHLV 207
G+ + + P L+
Sbjct: 88 --ASGLRKLVRKGEPERLL 104
Score = 31.0 bits (71), Expect = 0.64
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 13/79 (16%)
Query: 287 SLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVG 346
SLI R+ P L + ++ +EEL+ F + V+ + +PL DPY
Sbjct: 39 SLIFRYPEKPELVEAMSDLAREELQHF-----EQVLKIMKKRGIPLGPD-SKDPY----- 87
Query: 347 ATVQGVMQELNNCNPYHLV 365
G+ + + P L+
Sbjct: 88 --ASGLRKLVRKGEPERLL 104
>gnl|CDD|219450 pfam07524, Bromo_TP, Bromodomain associated. This domain is
predicted to bind DNA and is often found associated with
pfam00439 and in transcription factors. It has a
histone-like fold.
Length = 77
Score = 28.1 bits (63), Expect = 2.0
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 249 IETLHEMDIEYCHDLGKEVSVFS 271
+ETL ++ Y +LG++ F+
Sbjct: 29 LETLTDIAQSYIQELGRQAKRFA 51
>gnl|CDD|221274 pfam11859, DUF3379, Protein of unknown function (DUF3379). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria. Proteins in this
family are typically between 234 to 251 amino acids in
length.
Length = 232
Score = 29.9 bits (68), Expect = 2.1
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 17/63 (26%)
Query: 205 HLVWQSKVGP-----------LPWLGPFTDDALKGYVKQGKK-NFLLV-----PIAFVNE 247
HLV+Q + G + F D+ +G + + +LV + V +
Sbjct: 166 HLVFQGEQGKVTLFIVPIESRMVLEEAFADNGYEGIIFPTGDASLILVGEKGEDLDKVKK 225
Query: 248 HIE 250
I+
Sbjct: 226 KIK 228
>gnl|CDD|225340 COG2719, SpoVR, Uncharacterized conserved protein [Function
unknown].
Length = 495
Score = 28.2 bits (63), Expect = 8.3
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 132 DRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATV 191
D W T P K E ++ ++FP+E ++D++ +S L +P+ E+ V
Sbjct: 204 DLWRTLP---KKPGEAAVKDARRFPSEPEEDLLYFIEKNSPLL------EPWQREILRIV 254
Query: 192 QGVMQ 196
+ Q
Sbjct: 255 RKEAQ 259
Score = 28.2 bits (63), Expect = 8.3
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 290 DRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATV 349
D W T P K E ++ ++FP+E ++D++ +S L +P+ E+ V
Sbjct: 204 DLWRTLP---KKPGEAAVKDARRFPSEPEEDLLYFIEKNSPLL------EPWQREILRIV 254
Query: 350 QGVMQ 354
+ Q
Sbjct: 255 RKEAQ 259
>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide
oxidoreductase family protein. Members of this protein
family include N-terminal sequence regions of (probable)
bifunctional proteins whose C-terminal sequences are
SelD, or selenide,water dikinase, the selenium donor
protein necessary for selenium incorporation into
protein (as selenocysteine), tRNA (as 2-selenouridine),
or both. However, some members of this family occur in
species that do not show selenium incorporation, and the
function of this protein family is unknown.
Length = 364
Score = 28.0 bits (63), Expect = 9.1
Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 11/129 (8%)
Query: 90 RRWVSDIEVDSAPGTAERVVVIFSQVSSVKLGSPSNISWSLIDRWSTHPLLCKVFAERIQ 149
RW + +E AP +R+ V+ + V+ I+ +L R L +V
Sbjct: 130 ARWEALLESADAPPGTKRLAVVGGGAAGVE------IALALRRRLPKRGLRGQVTLIAGA 183
Query: 150 EELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQ 209
L FPA+V++ V+ L + + + + G ++ + ++W
Sbjct: 184 SLLPGFPAKVRRLVLRLLARRGIEV----HEGAPVTR-GPDGALILADGRTLPADAILWA 238
Query: 210 SKVGPLPWL 218
+ PWL
Sbjct: 239 TGARAPPWL 247
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.420
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,917,968
Number of extensions: 1886040
Number of successful extensions: 1661
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1633
Number of HSP's successfully gapped: 32
Length of query: 386
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 287
Effective length of database: 6,546,556
Effective search space: 1878861572
Effective search space used: 1878861572
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)