RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5712
(386 letters)
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation,
heme biosynthesis, iron, iron-sulfur, lyase, membrane,
metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo
sapiens} PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A*
2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 3aqi_A*
2pnj_A* 2po5_A* 2po7_A*
Length = 359
Score = 242 bits (621), Expect = 9e-78
Identities = 124/295 (42%), Positives = 158/295 (53%), Gaps = 61/295 (20%)
Query: 32 KPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPEAWSLHCQEKNARSTK------E 85
KPKT ILMLNMGGP V ++L R+ DRD++ LP L R+ K
Sbjct: 2 KPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRRTPKIQEQYRR 61
Query: 86 IPGN----RRW------------------VSDIEVDSA-----PGTAERV---------- 108
I G + W + + P T E +
Sbjct: 62 I-GGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLER 120
Query: 109 VVIFSQ--------VSSV---------KLGSPSNISWSLIDRWSTHPLLCKVFAERIQEE 151
+ F+Q S ++G + WS IDRW TH LL + FA+ I +E
Sbjct: 121 AIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILKE 180
Query: 152 LKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSK 211
L FP E + +V+ILFSAHSLP+ VNRGDPYP EV ATVQ VM+ L CNPY LVWQSK
Sbjct: 181 LDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLVWQSK 240
Query: 212 VGPLPWLGPFTDDALKGYVKQGKKNFLLVPIAFVNEHIETLHEMDIEYCHDLGKE 266
VGP+PWLGP TD+++KG ++G+KN LLVPIAF ++HIETL+E+DIEY L KE
Sbjct: 241 VGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLAKE 295
Score = 154 bits (391), Expect = 1e-43
Identities = 67/104 (64%), Positives = 80/104 (76%)
Query: 283 NISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYP 342
+ WS IDRW TH LL + FA+ I +EL FP E + +V+ILFSAHSLP+ VNRGDPYP
Sbjct: 154 TMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYP 213
Query: 343 SEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKG 386
EV ATVQ VM+ L CNPY LVWQSKVGP+PWLGP TD+++KG
Sbjct: 214 QEVSATVQKVMERLEYCNPYRLVWQSKVGPMPWLGPQTDESIKG 257
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus
subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A
3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A*
2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Length = 310
Score = 216 bits (552), Expect = 5e-68
Identities = 59/286 (20%), Positives = 109/286 (38%), Gaps = 52/286 (18%)
Query: 31 SKPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPEAWS---------------LHC 75
S+ K +L++ G P + + Y I R PE
Sbjct: 2 SRKKMGLLVMAYGTPYKEEDIERYYTHIRRGRKP--EPEMLQDLKDRYEAIGGISPLAQI 59
Query: 76 QEKNARSTKEIPGNRRWVSDIEVDSA-----PGTAE-----------RVVVI-----FSQ 114
E+ A + ++ + + P + V I FS
Sbjct: 60 TEQQAHNLEQHLNEIQDEITFKAYIGLAHIEPFIEDAVAEMHKDGITEAVSIVLAPHFST 119
Query: 115 VSS--------VKLGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIIL 166
S + ++ + ++ W P + +R++E P + +++ +++
Sbjct: 120 FSVQSYNKRAKEEAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYASMPEDERENAMLI 179
Query: 167 FSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVG-PLPWLGPFTDDA 225
SAHSLP + GDPYP ++ + + + + + Y + WQS+ P PWLGP D
Sbjct: 180 VSAHSLPEKIKEFGDPYPDQLHESAKLIAEGAGV-SEYAVGWQSEGNTPDPWLGPDVQDL 238
Query: 226 LKGYVKQ-GKKNFLLVPIAFVNEHIETLHEMDIEY---CHDLGKEV 267
+ +Q G + F+ VP+ FV +H+E L++ D E D+G
Sbjct: 239 TRDLFEQKGYQAFVYVPVGFVADHLEVLYDNDYECKVVTDDIGASY 284
Score = 144 bits (366), Expect = 2e-40
Identities = 27/105 (25%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 283 NISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYP 342
++ + ++ W P + +R++E P + +++ +++ SAHSLP + GDPYP
Sbjct: 138 GLTITSVESWYDEPKFVTYWVDRVKETYASMPEDERENAMLIVSAHSLPEKIKEFGDPYP 197
Query: 343 SEVGATVQGVMQELNNCNPYHLVWQSKVG-PLPWLGPFTDDALKG 386
++ + + + + + Y + WQS+ P PWLGP D +
Sbjct: 198 DQLHESAKLIAEGAGV-SEYAVGWQSEGNTPDPWLGPDVQDLTRD 241
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A
{Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Length = 362
Score = 198 bits (506), Expect = 2e-60
Identities = 71/141 (50%), Positives = 97/141 (68%), Gaps = 1/141 (0%)
Query: 119 KLGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVN 178
L S +ISWS+IDRW T+ L K F+E I ++L++FP V+ V++LFSAHSLP+ VN
Sbjct: 153 ALDSERSISWSVIDRWPTNEGLIKAFSENITKKLQEFPQPVRDKVVLLFSAHSLPMDVVN 212
Query: 179 RGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFL 238
GD YP+EV ATV +MQ+L NPY LVWQS+VGP PWLG T + + ++ +
Sbjct: 213 TGDAYPAEVAATVYNIMQKLKFKNPYRLVWQSQVGPKPWLGAQTAEIAE-FLGPKVDGLM 271
Query: 239 LVPIAFVNEHIETLHEMDIEY 259
+PIAF ++HIETLHE+D+
Sbjct: 272 FIPIAFTSDHIETLHEIDLGV 292
Score = 148 bits (376), Expect = 2e-41
Identities = 57/103 (55%), Positives = 75/103 (72%)
Query: 283 NISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYP 342
+ISWS+IDRW T+ L K F+E I ++L++FP V+ V++LFSAHSLP+ VN GD YP
Sbjct: 159 SISWSVIDRWPTNEGLIKAFSENITKKLQEFPQPVRDKVVLLFSAHSLPMDVVNTGDAYP 218
Query: 343 SEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALK 385
+EV ATV +MQ+L NPY LVWQS+VGP PWLG T + +
Sbjct: 219 AEVAATVYNIMQKLKFKNPYRLVWQSQVGPKPWLGAQTAEIAE 261
Score = 56.8 bits (138), Expect = 3e-09
Identities = 11/41 (26%), Positives = 26/41 (63%)
Query: 31 SKPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPEAW 71
+ T I+++NMGGP+ ++ ++L+++ D D+I + +
Sbjct: 4 KRSPTGIVLMNMGGPSKVEETYDFLYQLFADNDLIPISAKY 44
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.6 bits (120), Expect = 6e-07
Identities = 48/375 (12%), Positives = 108/375 (28%), Gaps = 133/375 (35%)
Query: 45 PTHTDQVSEYLHRIMTDR---------DMIQLPEAW---SLHCQ----EKNARSTKEIPG 88
+ L R++ + +Q +AW +L C+ + + T +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 89 NRRWVSDIEVDSAPGTAERVVVIFSQVSSVKLGS-PSNISWSLIDRWSTHPLLCKVFAER 147
++ S T + V + + + P + +T+P + AE
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL-------TTNPRRLSIIAES 336
Query: 148 IQEEL------KQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNC 201
I++ L K + + II S + L P+E +++
Sbjct: 337 IRDGLATWDNWKHVNCD-KLTTIIESSLNVLE----------PAE--------YRKM--- 374
Query: 202 NPYHL--VWQSKVGPLP-------WLGPFTDDAL--------KGYVKQGKKNF------L 238
+ V+ +P W D + V++ K +
Sbjct: 375 --FDRLSVFPPSA-HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 239 LVPIAFVNEHIETLHEMDIE----------------------YCH--------DLGKEVS 268
+ + E+ LH ++ Y H + + ++
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 269 VFSM-YL---FTG-----PGSPSNISWSLIDRWST-----------HPLLCKVFAERIQE 308
+F M +L F + N S S+++ P ER+
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY-----ERLVN 546
Query: 309 ELKQFPAEVQKDVII 323
+ F ++++++I
Sbjct: 547 AILDFLPKIEENLIC 561
Score = 44.8 bits (105), Expect = 4e-05
Identities = 60/441 (13%), Positives = 127/441 (28%), Gaps = 151/441 (34%)
Query: 47 HTD-QVSEYLHRIMTDRDMIQ-LPEAW--SLHCQEKNARSTKEIPGNRRWVSDIEVD--- 99
H D + E+ + +D++ +A+ + C++ +++P + +S E+D
Sbjct: 6 HMDFETGEHQY---QYKDILSVFEDAFVDNFDCKD-----VQDMP--KSILSKEEIDHII 55
Query: 100 SAPGTAERVVVIF-----SQVSSVK--LGSP--SNISWSLIDRWSTHPLLCKVFAERIQE 150
+ + +F Q V+ + N + L+ T E+ Q
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF-LMSPIKT---------EQRQP 105
Query: 151 ELKQFPAEVQKDVIILF-SAHSLPLRAVNRGDPYP----------SEVGATVQGVM---- 195
+ Q+D L+ V+R PY + G +
Sbjct: 106 SMMTRMYIEQRDR--LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG-VLGSG 162
Query: 196 -----------QELNNCNPYHLVWQSKVG------------------------------- 213
++ + + W + +
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLN-LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 214 PLPWLGPFTDDALKGYVKQGK-KNFLLVPIAFVNEHIETLHEMDIEYCHDL--------- 263
+ L+ +K +N LLV + V + + + ++ C L
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLV-LLNVQ-NAKAWNAFNLS-CKILLTTRFKQVT 278
Query: 264 ----GKEVSVFSMYLFTGPGSPSNISWSLIDRW-------------STHPLLCKVFAERI 306
+ S+ + +P SL+ ++ +T+P + AE I
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDE-VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 307 QEEL------KQFPAEVQKDVIILFSAHSLP---LR------AVNRGD-PYPSEV----- 345
++ L K + + II S + L R +V P+ +
Sbjct: 338 RDGLATWDNWKHVNCD-KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 346 -GATVQGVMQELNNCNPYHLV 365
VM +N + Y LV
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLV 417
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 5e-06
Identities = 70/430 (16%), Positives = 131/430 (30%), Gaps = 157/430 (36%)
Query: 79 NARSTKEIPGNRRWVSDIEVDSAPGTAERVVVIFS-QVSSVKLGSPSNISWS-LIDRWST 136
AR + P +++ S + G A ++V IF Q G+ ++ + L D + T
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNA-QLVAIFGGQ------GN-TDDYFEELRDLYQT 179
Query: 137 HPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRA-VNRGDPYPSE---VGATVQ 192
+ +L + E L + D +F+ L + + P + + +
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTL-DAEKVFT-QGLNILEWLENPSNTPDKDYLLSIPIS 237
Query: 193 ----GVMQ--------ELNNCNPYHLV------------------------WQS------ 210
GV+Q +L P L W+S
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR 297
Query: 211 -KVGPLPWLG-------PFTD---DALKGYVKQGKKN---FLLV---PIAFVNEHIETLH 253
+ L ++G P T L+ ++ + L + V +++
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN--- 354
Query: 254 EMDIEYCHDLGKEVSVFSMYLFTGP------GSPSNISWSLIDRWSTHPLLCKVFAE--- 304
+ L V + L G G P SL + + L K A
Sbjct: 355 ----KTNSHLPAGKQV-EISLVNGAKNLVVSGPPQ----SL---YGLNLTLRKAKAPSGL 402
Query: 305 ---RI---QEELK---QF-------------PAE--VQKDVI---ILFSAHSL--PLRAV 335
RI + +LK +F PA + KD++ + F+A + P+
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV--- 459
Query: 336 NRGDPYPSEVGATVQG----VMQELNNC---NPYHLVWQSKV----------GP--LPWL 376
Y + G+ ++ + + + +C P W++ GP L
Sbjct: 460 -----YDTFDGSDLRVLSGSISERIVDCIIRLPVK--WETTTQFKATHILDFGPGGASGL 512
Query: 377 GPFTDDALKG 386
G T G
Sbjct: 513 GVLTHRNKDG 522
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.022
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 15/44 (34%)
Query: 149 QEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQ 192
++ LK+ A ++ L++ S P A+ AT++
Sbjct: 19 KQALKKLQASLK-----LYADDSAPALAIK----------ATME 47
Score = 34.5 bits (78), Expect = 0.022
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 15/44 (34%)
Query: 307 QEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQ 350
++ LK+ A ++ L++ S P A+ AT++
Sbjct: 19 KQALKKLQASLK-----LYADDSAPALAIK----------ATME 47
Score = 31.5 bits (70), Expect = 0.27
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 5/29 (17%)
Query: 77 EKNARSTKEIPGNRRWVSDIEVDSAPGTA 105
EK + K++ + + +D DSAP A
Sbjct: 18 EKQ--ALKKLQASLKLYAD---DSAPALA 41
>2itb_A TRNA-(MS(2)IO(6)A)-hydroxylase, putative; putative ATTH, structural
genomics, joint center for structu genomics, JCSG; 2.05A
{Pseudomonas putida} SCOP: a.25.1.7
Length = 206
Score = 31.9 bits (72), Expect = 0.22
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 13/84 (15%)
Query: 124 SNISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPY 183
++ + SLI +++TH L + + +EEL + V+ L +PLR V Y
Sbjct: 43 ASTALSLIAKYNTHLDLINMMSRLAREELVHH-----EQVLRLMKRRGVPLRPV-SAGRY 96
Query: 184 PSEVGATVQGVMQELNNCNPYHLV 207
G+ + + P LV
Sbjct: 97 -------ASGLRRLVRAHEPVKLV 113
Score = 31.9 bits (72), Expect = 0.22
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 13/84 (15%)
Query: 282 SNISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPY 341
++ + SLI +++TH L + + +EEL + V+ L +PLR V Y
Sbjct: 43 ASTALSLIAKYNTHLDLINMMSRLAREELVHH-----EQVLRLMKRRGVPLRPV-SAGRY 96
Query: 342 PSEVGATVQGVMQELNNCNPYHLV 365
G+ + + P LV
Sbjct: 97 -------ASGLRRLVRAHEPVKLV 113
>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease,
complete proteome; 1.60A {Pyrococcus horikoshii} SCOP:
c.56.4.1
Length = 206
Score = 29.0 bits (64), Expect = 2.3
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 15/81 (18%)
Query: 274 LFTG----PGSPSNISWSLIDRWS-----THPLLCKVFAERIQEELKQFPAEVQKDVIIL 324
L TG G N + +++ S + V +R +E+L + +V+ D+ I
Sbjct: 4 LLTGFEPFGGDDKNPTMDIVEALSERIPEVVGEILPVSFKRAREKLLKVLDDVRPDITIN 63
Query: 325 FSAHS------LPLRAVNRGD 339
+ AVN D
Sbjct: 64 LGLAPGRTHISVERVAVNMID 84
Score = 27.5 bits (60), Expect = 7.2
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Query: 121 GSPSNISWSLIDRWS-----THPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHS---- 171
G N + +++ S + V +R +E+L + +V+ D+ I
Sbjct: 13 GDDKNPTMDIVEALSERIPEVVGEILPVSFKRAREKLLKVLDDVRPDITINLGLAPGRTH 72
Query: 172 --LPLRAVNRGD 181
+ AVN D
Sbjct: 73 ISVERVAVNMID 84
>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural
genomics, protein structure initiative; 2.04A
{Bacteroides vulgatus atcc 8482}
Length = 320
Score = 28.9 bits (65), Expect = 2.6
Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 1/72 (1%)
Query: 207 VWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLLVPIAFVNEHIETLHEMDIEYCHDLGKE 266
+ K+ + T + L + ++ IA ++I+ + + +G E
Sbjct: 71 ISTKKIAIMLNEKNTTPEDLNHLLLPIIGLVDMIRIAIDPQNIDRAIVL-AKAIKTMGFE 129
Query: 267 VSVFSMYLFTGP 278
V MY+
Sbjct: 130 VGFNVMYMSKWA 141
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 29.1 bits (66), Expect = 3.1
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 144 FAERIQEELKQFPAEVQKDVIILFSA 169
++ P Q I+LFSA
Sbjct: 277 LGDQSMRIKHLLPRNTQ---IVLFSA 299
Score = 29.1 bits (66), Expect = 3.1
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 302 FAERIQEELKQFPAEVQKDVIILFSA 327
++ P Q I+LFSA
Sbjct: 277 LGDQSMRIKHLLPRNTQ---IVLFSA 299
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene
regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19
c.37.1.19 PDB: 1xtj_A* 1xtk_A
Length = 391
Score = 28.3 bits (64), Expect = 5.0
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 144 FAERIQEELKQFPAEVQKDVIILFSA 169
+QE + P E Q +++FSA
Sbjct: 170 MRRDVQEIFRMTPHEKQ---VMMFSA 192
Score = 28.3 bits (64), Expect = 5.0
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 302 FAERIQEELKQFPAEVQKDVIILFSA 327
+QE + P E Q +++FSA
Sbjct: 170 MRRDVQEIFRMTPHEKQ---VMMFSA 192
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Length = 230
Score = 27.6 bits (62), Expect = 5.9
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 144 FAERIQEELKQFPAEVQKDVIILFSA 169
F E+I PA Q ++ SA
Sbjct: 184 FQEQINWIYSSLPASKQ---MLAVSA 206
Score = 27.6 bits (62), Expect = 5.9
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 302 FAERIQEELKQFPAEVQKDVIILFSA 327
F E+I PA Q ++ SA
Sbjct: 184 FQEQINWIYSSLPASKQ---MLAVSA 206
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein,
translation; 2.50A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 2vso_A* 2vsx_A*
Length = 394
Score = 27.9 bits (63), Expect = 6.2
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 144 FAERIQEELKQFPAEVQKDVIILFSA 169
F E+I + P Q ++L SA
Sbjct: 179 FKEQIYQIFTLLPPTTQ---VVLLSA 201
Score = 27.9 bits (63), Expect = 6.2
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 302 FAERIQEELKQFPAEVQKDVIILFSA 327
F E+I + P Q ++L SA
Sbjct: 179 FKEQIYQIFTLLPPTTQ---VVLLSA 201
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis,
cell cycle, nucleus, phosph RNA-binding, ATP-binding,
helicase, hydrolase; 3.50A {Homo sapiens}
Length = 414
Score = 27.9 bits (63), Expect = 6.5
Identities = 6/26 (23%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 144 FAERIQEELKQFPAEVQKDVIILFSA 169
F ++I + ++ + Q ++L SA
Sbjct: 200 FKDQIYDIFQKLNSNTQ---VVLLSA 222
Score = 27.9 bits (63), Expect = 6.5
Identities = 6/26 (23%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 302 FAERIQEELKQFPAEVQKDVIILFSA 327
F ++I + ++ + Q ++L SA
Sbjct: 200 FKDQIYDIFQKLNSNTQ---VVLLSA 222
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding,
RNA binding protein; 2.10A {Saccharomyces cerevisiae}
SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Length = 400
Score = 27.9 bits (63), Expect = 6.8
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 144 FAERIQEELKQFPAEVQKDVIILFSA 169
F I++ L P Q +LFSA
Sbjct: 180 FKTIIEQILSFLPPTHQ---SLLFSA 202
Score = 27.9 bits (63), Expect = 6.8
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 302 FAERIQEELKQFPAEVQKDVIILFSA 327
F I++ L P Q +LFSA
Sbjct: 180 FKTIIEQILSFLPPTHQ---SLLFSA 202
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family,
gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 1qva_A
Length = 224
Score = 27.5 bits (62), Expect = 7.2
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 144 FAERIQEELKQFPAEVQKDVIILFSA 169
F E+I + P Q ++L SA
Sbjct: 172 FKEQIYQIFTLLPPTTQ---VVLLSA 194
Score = 27.5 bits (62), Expect = 7.2
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 302 FAERIQEELKQFPAEVQKDVIILFSA 327
F E+I + P Q ++L SA
Sbjct: 172 FKEQIYQIFTLLPPTTQ---VVLLSA 194
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation,
rRNA processing, mRNA splicing, mRNA transport; HET:
ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB:
2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B
2zu6_A
Length = 410
Score = 27.5 bits (62), Expect = 7.3
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 144 FAERIQEELKQFPAEVQKDVIILFSA 169
F E+I + + P Q ++L SA
Sbjct: 196 FKEQIYDVYRYLPPATQ---VVLISA 218
Score = 27.5 bits (62), Expect = 7.3
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 302 FAERIQEELKQFPAEVQKDVIILFSA 327
F E+I + + P Q ++L SA
Sbjct: 196 FKEQIYDVYRYLPPATQ---VVLISA 218
>4fbd_A Putative uncharacterized protein; conserved hypothetical,
structural genomics, niaid, national institute of
allergy and infectious diseases; 2.35A {Toxoplasma
gondii}
Length = 243
Score = 27.4 bits (60), Expect = 8.0
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 11/63 (17%)
Query: 80 ARSTKEIPGNRRWVSDIEVDSAPGTAERVVVIF-----------SQVSSVKLGSPSNISW 128
AR E+P RW A A + +I ++ ++ + P+ +W
Sbjct: 122 ARRPNELPVLTRWFPMSYAKDALMPAAFLDLILYSREQIAKETAAESNTAVVIDPNAPAW 181
Query: 129 SLI 131
S+I
Sbjct: 182 SII 184
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX,
structural genomics, helic binding, HOST-virus
interaction, hydrolase; 1.85A {Homo sapiens} PDB:
2g9n_A*
Length = 237
Score = 27.2 bits (61), Expect = 8.1
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 144 FAERIQEELKQFPAEVQKDVIILFSA 169
F ++I E ++ +Q ++L SA
Sbjct: 190 FKDQIYEIFQKLNTSIQ---VVLLSA 212
Score = 27.2 bits (61), Expect = 8.1
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 302 FAERIQEELKQFPAEVQKDVIILFSA 327
F ++I E ++ +Q ++L SA
Sbjct: 190 FKDQIYEIFQKLNTSIQ---VVLLSA 212
>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer
sandwich, hydrolase, protease, thiol protease,
structural genomics; 2.00A {Bacillus anthracis}
Length = 215
Score = 27.2 bits (59), Expect = 9.2
Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 18/84 (21%)
Query: 274 LFTG----PGSPSNISWSL--------IDRWSTHPLLCKVFAERIQEELKQFPAEVQKDV 321
L TG G N +W + I + + LK++ E+ +
Sbjct: 5 LLTGFDPFGGESINPAWEVAKSLHEKTIGEYKIISKQVPTVFHKSISVLKEYIEELAPEF 64
Query: 322 IILFSAHS------LPLRAVNRGD 339
II + A+N D
Sbjct: 65 IICIGQAGGRPDITIERVAINIDD 88
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.420
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,978,547
Number of extensions: 347159
Number of successful extensions: 788
Number of sequences better than 10.0: 1
Number of HSP's gapped: 779
Number of HSP's successfully gapped: 45
Length of query: 386
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 291
Effective length of database: 4,049,298
Effective search space: 1178345718
Effective search space used: 1178345718
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.6 bits)