RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5712
(386 letters)
>d2hrca1 c.92.1.1 (A:65-423) Ferrochelatase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 359
Score = 142 bits (359), Expect = 9e-40
Identities = 121/339 (35%), Positives = 161/339 (47%), Gaps = 73/339 (21%)
Query: 32 KPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPEAWSL------------------ 73
KPKT ILMLNMGGP V ++L R+ DRD++ LP L
Sbjct: 2 KPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRLTPKIQEQYRR 61
Query: 74 ---------HCQEKNARSTKEIPGNRRWVSDIEVDSAPGTAER----------------- 107
++ K + + +
Sbjct: 62 IGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERA 121
Query: 108 -VVVIFSQVSS--------------VKLGSPSNISWSLIDRWSTHPLLCKVFAERIQEEL 152
+ Q S ++G + WS IDRW TH LL + FA+ I +EL
Sbjct: 122 IAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILKEL 181
Query: 153 KQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKV 212
FP E + +V+ILFSAHSLP+ VNRGDPYP EV ATVQ VM+ L CNPY LVWQSKV
Sbjct: 182 DHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLVWQSKV 241
Query: 213 GPLPWLGPFTDDALKGYVKQGKKNFLLVPIAFVNEHIETLHEMDIEYCHDLGKEVSVFSM 272
GP+PWLGP TD+++KG ++G+KN LLVPIAF ++HIETL+E+DIEY L KE V ++
Sbjct: 242 GPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENI 301
Query: 273 YLFTGPGSPSNISWSLIDRWSTHPLLCKVFAERIQEELK 311
+PL K A+ + ++
Sbjct: 302 RRAESLN--------------GNPLFSKALADLVHSHIQ 326
Score = 73.7 bits (180), Expect = 3e-15
Identities = 67/107 (62%), Positives = 80/107 (74%)
Query: 279 GSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRG 338
G + WS IDRW TH LL + FA+ I +EL FP E + +V+ILFSAHSLP+ VNRG
Sbjct: 150 GRKPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRG 209
Query: 339 DPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALK 385
DPYP EV ATVQ VM+ L CNPY LVWQSKVGP+PWLGP TD+++K
Sbjct: 210 DPYPQEVSATVQKVMERLEYCNPYRLVWQSKVGPMPWLGPQTDESIK 256
>d2hk6a1 c.92.1.1 (A:2-310) Ferrochelatase {Bacillus subtilis
[TaxId: 1423]}
Length = 309
Score = 116 bits (291), Expect = 2e-30
Identities = 61/328 (18%), Positives = 118/328 (35%), Gaps = 65/328 (19%)
Query: 31 SKPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPEAWS---------------LHC 75
S+ K +L++ G P + + Y I R PE
Sbjct: 1 SRKKMGLLVMAYGTPYKEEDIERYYTHIRRGRKP--EPEMLQDLKDRYEAIGGISPLAQI 58
Query: 76 QEKNARSTKE-----------------IPGNRRWVSDIEVDSAPGTAERVVVIFSQVSSV 118
E+ A + ++ + G E V ++ + S
Sbjct: 59 TEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGITEAVSIVLAPHFST 118
Query: 119 ------------KLGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIIL 166
+ ++ + ++ W P + +R++E P + +++ +++
Sbjct: 119 FSVQSYNKRAKEEAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYASMPEDERENAMLI 178
Query: 167 FSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGP-LPWLGPFTDDA 225
SAHSLP + GDPYP ++ + + + E + Y + WQS+ PWLGP D
Sbjct: 179 VSAHSLPEKIKEFGDPYPDQLHESAKLIA-EGAGVSEYAVGWQSEGNTPDPWLGPDVQDL 237
Query: 226 LKGYVKQ-GKKNFLLVPIAFVNEHIETLHEMDIEYCHDLGKEVSVFSMYLFTGPGSPSNI 284
+ +Q G + F+ VP+ FV +H+E L++ D E K + G
Sbjct: 238 TRDLFEQKGYQAFVYVPVGFVADHLEVLYDNDYEC-----KV-------VTDDIG----A 281
Query: 285 SWSLIDRWSTHPLLCKVFAERIQEELKQ 312
S+ + + P A + ++L +
Sbjct: 282 SYYRPEMPNAKPEFIDALATVVLKKLGR 309
>d1lbqa_ c.92.1.1 (A:) Ferrochelatase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 356
Score = 103 bits (258), Expect = 2e-25
Identities = 74/195 (37%), Positives = 110/195 (56%), Gaps = 20/195 (10%)
Query: 119 KLGSPSNISWSLIDRWSTHPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVN 178
L S +ISWS+IDRW T+ L K F+E I ++L++FP V+ V++LFSAHSLP+ VN
Sbjct: 149 ALDSERSISWSVIDRWPTNEGLIKAFSENITKKLQEFPQPVRDKVVLLFSAHSLPMDVVN 208
Query: 179 RGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFL 238
GD YP+EV ATV +MQ+L NPY LVWQS+VGP PWLG T + + ++ +
Sbjct: 209 TGDAYPAEVAATVYNIMQKLKFKNPYRLVWQSQVGPKPWLGAQTAEIAE-FLGPKVDGLM 267
Query: 239 LVPIAFVNEHIETLHEMDIEYC-HDLGKEVSVFSMYLFTGPGSPSNISWSLIDRWSTHPL 297
+PIAF ++HIETLHE+D+ K+ + + + +
Sbjct: 268 FIPIAFTSDHIETLHEIDLGVIGESEYKD------------------KFKRCESLNGNQT 309
Query: 298 LCKVFAERIQEELKQ 312
+ A+ ++ L+
Sbjct: 310 FIEGMADLVKSHLQS 324
Score = 67.5 bits (164), Expect = 4e-13
Identities = 73/211 (34%), Positives = 99/211 (46%), Gaps = 14/211 (6%)
Query: 175 RAVNRGDPYPSEVGATVQGVMQELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGK 234
R + G P V + L+ P + V P T + K +K G
Sbjct: 61 REIGGGSPIRKWSEYQATEVCKILDKTCPETAPHKPYVAFRYA-KPLTAETYKQMLKDGV 119
Query: 235 KNFLLVPIAFVNEHIETLHEMDIEYCHDLGKEVSVFSMYLFTGPGSPSNISWSLIDRWST 294
K + E+ L S +ISWS+IDRW T
Sbjct: 120 KKAVAFS---------QYPHFSYSTTGSSINELWRQIKALD----SERSISWSVIDRWPT 166
Query: 295 HPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQ 354
+ L K F+E I ++L++FP V+ V++LFSAHSLP+ VN GD YP+EV ATV +MQ
Sbjct: 167 NEGLIKAFSENITKKLQEFPQPVRDKVVLLFSAHSLPMDVVNTGDAYPAEVAATVYNIMQ 226
Query: 355 ELNNCNPYHLVWQSKVGPLPWLGPFTDDALK 385
+L NPY LVWQS+VGP PWLG T + +
Sbjct: 227 KLKFKNPYRLVWQSQVGPKPWLGAQTAEIAE 257
Score = 54.4 bits (130), Expect = 8e-09
Identities = 11/40 (27%), Positives = 26/40 (65%)
Query: 32 KPKTAILMLNMGGPTHTDQVSEYLHRIMTDRDMIQLPEAW 71
+ T I+++NMGGP+ ++ ++L+++ D D+I + +
Sbjct: 1 RSPTGIVLMNMGGPSKVEETYDFLYQLFADNDLIPISAKY 40
>d1qgoa_ c.92.1.2 (A:) Cobalt chelatase CbiK {Salmonella typhimurium
[TaxId: 90371]}
Length = 257
Score = 42.3 bits (99), Expect = 4e-05
Identities = 13/181 (7%), Positives = 40/181 (22%), Gaps = 45/181 (24%)
Query: 136 THPLLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVM 195
+ + +++++ + ++F H + +
Sbjct: 114 SSHNDYVQLMQALRQQMPSLR----QTEKVVFMGHGAS-------HHAFAAYACLDHMMT 162
Query: 196 QELNNCNPYHLVWQSKVGPLPWLGPFTDDALKGYVKQGKKNFLLVPIAFVNEH------I 249
+ + P D + +G L+P+ V
Sbjct: 163 AQRFPARVGAV----------ESYPEVDILIDSLRDEGVTGVHLMPLMLVAGDHAINDMA 212
Query: 250 ETLHEMDIEYCHDLGKEVSVFSMYLFTGPGSPSNISWSLIDRWSTHPLLCKVFAERIQEE 309
+ + G + + L +P + +F + +
Sbjct: 213 SDDGDSWKMRFNAAGIPATPWLSGL------------------GENPAIRAMFVAHLHQA 254
Query: 310 L 310
L
Sbjct: 255 L 255
>d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX,
catalytic domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 255
Score = 32.7 bits (74), Expect = 0.055
Identities = 16/106 (15%), Positives = 40/106 (37%), Gaps = 25/106 (23%)
Query: 240 VPIAFVNEHIETLHEMDIEYCHDLGKEVSVFSMYLFTGPGSPSNISWSLIDRWSTHPLLC 299
VP +++ + E + E D++ +L + + + + L+ + P +
Sbjct: 154 VPARYIHSNTEVVDERDVDATVELMTK---ALENI-----HELMVDYELLKKVVEAPGVS 205
Query: 300 ----KVFAERIQEELKQFPAEVQKDVI-------------ILFSAH 328
+ + EE+K + EV+ D + ++ +AH
Sbjct: 206 GYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHKKGEGPKVMIAAH 251
>d2gmha2 d.16.1.8 (A:237-335) Electron transfer
flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 99
Score = 26.3 bits (58), Expect = 2.6
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 259 YCHDLGKEVSVFSMYLFTGP--GSPSNISWSLIDRWSTHPLLCKVF--AERI 306
+ + L + + ++ G +P + RW HP + +RI
Sbjct: 39 FLYHLNEGEPLLALGFVVGLDYQNPYLSPFREFQRWKHHPSIKPTLEGGKRI 90
Score = 25.2 bits (55), Expect = 5.6
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 106 ERVVVIFSQVSSVKLGSPSNISWSLIDRWSTHPLLCKVF--AERI 148
++ V + +P + RW HP + +RI
Sbjct: 46 GEPLLALGFVVGLDYQNPYLSPFREFQRWKHHPSIKPTLEGGKRI 90
>d1k28d2 b.106.1.1 (D:201-376) Baseplate structural protein gp27
{Bacteriophage T4 [TaxId: 10665]}
Length = 176
Score = 26.4 bits (58), Expect = 4.0
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 236 NFLLVP---IAFVNEHIETLHEMDI-EYCHDLGKEVSVFSMYLFT 276
NF L P I F + + E + E H+L SV +Y+FT
Sbjct: 115 NFNLTPGVKIIFNDSKNQFKTEFYVDEVIHELSNNNSVTHLYMFT 159
>d2asba2 d.52.3.1 (A:184-262) Transcription factor NusA, C-terminal
domains {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 79
Score = 24.6 bits (54), Expect = 7.4
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 20/77 (25%)
Query: 136 THP-LLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLR----AVNRGDPYPSEVGA- 189
THP L+ K+F+ + E+ + + + AV + GA
Sbjct: 1 THPNLVRKLFSLEV--------PEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGAC 52
Query: 190 ------TVQGVMQELNN 200
V+ VM EL+
Sbjct: 53 IGPMGQRVRNVMSELSG 69
Score = 24.6 bits (54), Expect = 7.4
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 20/77 (25%)
Query: 294 THP-LLCKVFAERIQEELKQFPAEVQKDVIILFSAHSLPLR----AVNRGDPYPSEVGA- 347
THP L+ K+F+ + E+ + + + AV + GA
Sbjct: 1 THPNLVRKLFSLEV--------PEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGAC 52
Query: 348 ------TVQGVMQELNN 358
V+ VM EL+
Sbjct: 53 IGPMGQRVRNVMSELSG 69
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain
{Escherichia coli [TaxId: 562]}
Length = 263
Score = 26.0 bits (57), Expect = 7.5
Identities = 12/58 (20%), Positives = 22/58 (37%)
Query: 144 FAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNC 201
E+ E DVI++ S +L +A G+ S +G + + Q +
Sbjct: 116 TGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 173
Score = 26.0 bits (57), Expect = 7.5
Identities = 12/58 (20%), Positives = 22/58 (37%)
Query: 302 FAERIQEELKQFPAEVQKDVIILFSAHSLPLRAVNRGDPYPSEVGATVQGVMQELNNC 359
E+ E DVI++ S +L +A G+ S +G + + Q +
Sbjct: 116 TGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 173
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.420
Gapped
Lambda K H
0.267 0.0476 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,479,424
Number of extensions: 68209
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 17
Length of query: 386
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 299
Effective length of database: 1,213,086
Effective search space: 362712714
Effective search space used: 362712714
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.2 bits)