BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5713
(81 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 3 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
EPMDTIF+K V+ PA AGL GDR++ VN +++ Y++V+ LIQNS L L V+
Sbjct: 58 EPMDTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVM 117
Query: 63 PKEN 66
PK++
Sbjct: 118 PKDS 121
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68
+I+ V P SPA AGL+ GDR+V VN + + + +VV I+ + + LLVV END
Sbjct: 29 YIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPENDS 88
Query: 69 L 69
L
Sbjct: 89 L 89
>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human
Nherf-2 (slc9a3r2)
Length = 88
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
FI+ V P SPA AA L GDR+V VN + + +VVQ I+ LLVV +E+
Sbjct: 28 FIRRVEPGSPAEAAALRAGDRLVEVNGVNVEGETHHQVVQRIKAVEGQTRLLVVDQED 85
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2- Ar And Pdgfr
Length = 91
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
+I+ V P SPA AGL+ GDR+V VN + + + +VV I+ + + LLVV E D
Sbjct: 30 YIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPEED 88
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
+I+ V P SPA AGL+ GDR+V VN + + + +VV I+ + + LLVV E D
Sbjct: 30 YIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETD 88
>pdb|2D90|A Chain A, Solution Structure Of The Third Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 102
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65
IK + P SPA AAGL D VVAVN +++ L + VV++I+ LLV+ KE
Sbjct: 33 IIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKE 89
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
+I+ V P SPA AGL+ GDR+V VN + + + +VV I+ + + LLVV E D
Sbjct: 30 YIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPEQD 88
>pdb|2JXO|A Chain A, Structure Of The Second Pdz Domain Of Nherf-1
Length = 98
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
FI+ V P SPA A+GL DR+V VN + + +VV I+ LLVV +E D
Sbjct: 36 FIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETD 94
>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz
Binding Motif
Length = 90
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
D+ +I+ V P SPAA +GL DR++ VN Q + L +AEVV I+ LLV
Sbjct: 24 DKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLV 83
Query: 62 V 62
V
Sbjct: 84 V 84
>pdb|2V90|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Intestine-
And Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Intestine-
And Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|C Chain C, Crystal Structure Of The 3rd Pdz Domain Of Intestine-
And Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|D Chain D, Crystal Structure Of The 3rd Pdz Domain Of Intestine-
And Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|E Chain E, Crystal Structure Of The 3rd Pdz Domain Of Intestine-
And Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|F Chain F, Crystal Structure Of The 3rd Pdz Domain Of Intestine-
And Kidney-enriched Pdz Domain Ikepp (pdzd3)
Length = 96
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
F+ V P PA AG+ GDR+VAV +++ L + E V IQ + + L VV E D
Sbjct: 33 FLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVDPEAD 91
>pdb|3R68|A Chain A, Molecular Analysis Of The Pdz3 Domain Of Pdzk1
Length = 95
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65
IK + P SPA AAGL D VVAVN +++ L + VV++I+ LLV+ KE
Sbjct: 32 IIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKE 88
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 17 SPA-AAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65
SPA A L GDR++AVN Q+I ++P+A++V+LI+++ + L ++P+E
Sbjct: 54 SPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQE 103
>pdb|2KJD|A Chain A, Solution Structure Of Extended Pdz2 Domain From Nherf1
(150- 270)
Length = 128
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
FI+ V P SPA A+GL DR+V VN + + +VV I+ LLVV +E D
Sbjct: 36 FIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETD 94
>pdb|2VSP|A Chain A, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
pdb|2VSP|B Chain B, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
pdb|2VSP|C Chain C, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
pdb|2VSP|D Chain D, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
Length = 91
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65
FIK V+ PA AGL D ++ VN + D PY +VV IQ+S + LLV K+
Sbjct: 30 FIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKK 86
>pdb|2KRG|A Chain A, Solution Structure Of Human Sodium HYDROGEN EXCHANGE
Regulatory Factor 1(150-358)
Length = 216
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
FI+ V P SPA A+GL DR+V VN + + +VV I+ LLVV +E D
Sbjct: 36 FIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETD 94
>pdb|3R69|A Chain A, Molecular Analysis Of The Interaction Of The
Hdl-Receptor Sr-Bi With The Pdz3 Domain Of Its Adaptor
Protein Pdzk1
pdb|3R69|B Chain B, Molecular Analysis Of The Interaction Of The
Hdl-Receptor Sr-Bi With The Pdz3 Domain Of Its Adaptor
Protein Pdzk1
Length = 89
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65
IK + P SPA AAGL D VVAVN +++ L + VV++I+ LLV+ K+
Sbjct: 29 IIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKQ 85
>pdb|3TMH|A Chain A, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|E Chain E, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|I Chain I, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
Length = 87
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65
FIK V+ PA AGL D ++ VN + D PY +VV IQ+S + LLV K+
Sbjct: 30 FIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKK 86
>pdb|2OZF|A Chain A, The Crystal Structure Of The 2nd Pdz Domain Of The Human
Nherf-1 (Slc9a3r1)
Length = 92
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
FI+ V P SPA A+GL DR+V VN + + +VV I+ LLVV +E +
Sbjct: 31 FIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETE 89
>pdb|2EEJ|A Chain A, Solution Structure Of Fourth Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 96
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
FIK V+ PA AGL D ++ VN + D PY +VV IQ+S + LLV K++
Sbjct: 34 FIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKKS 91
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho
Guanine Nucleotide Exchange Factor 11
Length = 93
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
+ ++ VRP A AG+ GDR++ VN + + + EVV+LI+ S AY+ L
Sbjct: 31 VLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIK-SGAYVAL 81
>pdb|3NGH|A Chain A, Molecular Analysis Of The Interaction Of The Hdl
Receptor Sr-Bi With The Adaptor Protein Pdzk1
pdb|3NGH|B Chain B, Molecular Analysis Of The Interaction Of The Hdl
Receptor Sr-Bi With The Adaptor Protein Pdzk1
Length = 106
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 1 MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
+++ D I+ + SPA AGL+ GDRV+ +N + +A+VV+L++ S + LL
Sbjct: 21 IEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLL 80
Query: 61 VV 62
V+
Sbjct: 81 VL 82
>pdb|2EDZ|A Chain A, Solution Structures Of The Pdz Domain Of Mus Musculus
Pdz Domain-Containing Protein 1
Length = 114
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 1 MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
+++ D I+ + SPA AGL+ GDRV+ +N + +A+VV+L++ S + LL
Sbjct: 33 IEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLL 92
Query: 61 VV 62
V+
Sbjct: 93 VL 94
>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
pdb|4F8K|B Chain B, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
Length = 109
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 1 MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
+++ D I+ + SPA AGL+ GDRV+ +N + +A+VV+L++ S + LL
Sbjct: 22 IEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLL 81
Query: 61 VV 62
V+
Sbjct: 82 VL 83
>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
Length = 123
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 3 EPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS 53
E M IFIKHV SPA G L PGDR+V V+ + D + + V+ I+ +
Sbjct: 56 EVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKA 107
>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz
(Mupp-1)
Length = 103
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 3 EPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS 53
E M IFIKHV SPA G L PGDR+V V+ + D + + V+ I+ +
Sbjct: 36 EVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKA 87
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
IFI HV+P S +A GL GD++V VN ++L + E V ++++S + +V +
Sbjct: 29 IFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAGRE 88
Query: 68 LL 69
L
Sbjct: 89 LF 90
>pdb|2EGK|A Chain A, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|B Chain B, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|C Chain C, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|D Chain D, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
Length = 101
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
F+ V SPA AGL PGD + +VN + + + E+V +I+ S L L
Sbjct: 40 FVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRL 90
>pdb|2PNT|A Chain A, Crystal Structure Of The Pdz Domain Of Human Grasp
(Grp1) In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
pdb|2PNT|B Chain B, Crystal Structure Of The Pdz Domain Of Human Grasp
(Grp1) In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
Length = 98
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
F+ V SPA AGL PGD + +VN + + + E+V +I+ S L L
Sbjct: 40 FVCRVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRL 90
>pdb|2EGO|A Chain A, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGO|B Chain B, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGN|A Chain A, Crystal Structure Of Tamalin Pdz Domain In Complex With
Mglur5 C-Terminal Peptide
Length = 96
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
F+ V SPA AGL PGD + +VN + + + E+V +I+ S L L
Sbjct: 40 FVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRL 90
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
IFI HV+P S +A GL GD++V VN ++L + E V ++++S + +V +
Sbjct: 43 IFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAGRE 102
Query: 68 LL 69
L
Sbjct: 103 LF 104
>pdb|2EEI|A Chain A, Solution Structure Of Second Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 106
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
+++ + P A AG++ D ++ VN + + D + EVV+ ++ S + + L+V KE D
Sbjct: 34 VYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDKETD 93
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
D +IF+ + P PAAA G + GD ++ +NNQ + + +I+ +P+ + L+
Sbjct: 47 DRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLV 106
Query: 61 VVPKENDLLQLTS 73
+ E+ + Q+ S
Sbjct: 107 FIRNEDAVNQMAS 119
>pdb|2KQF|A Chain A, Solution Structure Of Mast205-Pdz Complexed With The
C-Terminus Of A Rabies Virus G Protein
pdb|2KYL|A Chain A, Solution Structure Of Mast2-Pdz Complexed With The
C-Terminus Of Pten
Length = 96
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
+ HV PA+ AGL GD + VN + + L + EVV+LI S + + P EN
Sbjct: 39 MVWHVEDGGPASEAGLRQGDLITHVNGEPVHGLVHTEVVELILKSGNKVAISTTPLEN 96
>pdb|1M5Z|A Chain A, The Pdz7 Of Glutamate Receptor Interacting Protein Binds
To Its Target Via A Novel Hydrophobic Surface Area
Length = 91
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
+++K++RP P GL P DR++ VN+ D VV LI S L L++
Sbjct: 34 VYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVI 87
>pdb|3PS4|A Chain A, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|B Chain B, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|C Chain C, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|D Chain D, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
Length = 102
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 10 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
+ HV PA AGL GD + VN + + + + EVV+LI S + + P EN
Sbjct: 41 VWHVEEGGPAQEAGLCAGDLITHVNGEPVHGMVHPEVVELILKSGNKVAVTTTPFEN 97
>pdb|3ID3|A Chain A, Crystal Structure Of Rsep Pdz2 I304a Domain
pdb|3ID3|B Chain B, Crystal Structure Of Rsep Pdz2 I304a Domain
Length = 89
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 10 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLL 69
+++V+P+S A+ AGL GDR+V V+ Q + + V L++++P L + ++ L
Sbjct: 6 LENVQPNSAASKAGLQAGDRIVKVDGQPLTQ--WVTFVMLVRDNPGKSLALEIERQGSPL 63
Query: 70 QLT 72
LT
Sbjct: 64 SLT 66
>pdb|3ID2|A Chain A, Crystal Structure Of Rsep Pdz2 Domain
pdb|3ID2|B Chain B, Crystal Structure Of Rsep Pdz2 Domain
Length = 90
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 10 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLL 69
+++V+P+S A+ AGL GDR+V V+ Q + + V L++++P L + ++ L
Sbjct: 7 LENVQPNSAASKAGLQAGDRIVKVDGQPLTQ--WVTFVMLVRDNPGKSLALEIERQGSPL 64
Query: 70 QLT 72
LT
Sbjct: 65 SLT 67
>pdb|3ID4|A Chain A, Crystal Structure Of Rsep Pdz2 Domain Fused Gkaspv
Peptide
Length = 93
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 10 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLL 69
+++V+P+S A+ AGL GDR+V V+ Q + + V L++++P L + ++ L
Sbjct: 6 LENVQPNSAASKAGLQAGDRIVKVDGQPLTQ--WVTFVMLVRDNPGKSLALEIERQGSPL 63
Query: 70 QLT 72
LT
Sbjct: 64 SLT 66
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65
I+I V P S A +GL GD+++ VN ++ ++ + E V+L+++S HL++ K+
Sbjct: 48 IYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSR---HLILTVKD 102
>pdb|2ZPM|A Chain A, Crystal Structure Analysis Of Pdz Domain B
Length = 91
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 10 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLL 69
+++V+P+S A+ AGL GDR+V V+ Q + + V L++++P L + ++ L
Sbjct: 8 LENVQPNSAASXAGLQAGDRIVXVDGQPLTQ--WVTFVXLVRDNPGXSLALEIERQGSPL 65
Query: 70 QLT 72
LT
Sbjct: 66 SLT 68
>pdb|1MFG|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
pdb|1MFL|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
Length = 95
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
D IF+ V+P PA+ L PGD+++ N + ++ + + V L++ + L++V
Sbjct: 35 DGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIV 90
>pdb|2OMJ|A Chain A, Solution Structure Of Larg Pdz Domain
pdb|2OS6|A Chain A, Solution Structure Of Larg Pdz Domain In Complex With C-
Terminal Octa-Peptide Of Plexin B1
Length = 89
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
+F++ V+ A AG+ GDR++ VN + + EVV+LI+ S +Y+ L V
Sbjct: 30 VFVQSVKEDGAAMRAGVQTGDRIIKVNGTLVTHSNHLEVVKLIK-SGSYVALTV 82
>pdb|2H3L|A Chain A, Crystal Structure Of Erbin Pdz
pdb|2H3L|B Chain B, Crystal Structure Of Erbin Pdz
pdb|1N7T|A Chain A, Erbin Pdz Domain Bound To A Phage-Derived Peptide
Length = 103
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
D IF+ V+P PA+ L PGD+++ N + ++ + + V L++ + L++V
Sbjct: 43 DGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIV 98
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
I++K V P A + G + GDRV+AVN ++ + + V+ ++N+ +HLL+
Sbjct: 35 IYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 89
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
I++K V P A + G + GDRV+AVN ++ + + V+ ++N+ +HLL+
Sbjct: 44 IYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 98
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With
Ra-Gef2 Peptide
Length = 96
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
I++K V P A + G + GDRV+AVN ++ + + V+ ++N+ +HLL+
Sbjct: 35 IYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 89
>pdb|2W7R|A Chain A, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
pdb|2W7R|B Chain B, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
Length = 98
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
+ +V SPA AGL GD + +N + + L + EV++L+ S + + P EN
Sbjct: 36 IVWNVEEGSPACQAGLKAGDLITHINGEPVHGLVHTEVIELLLKSGNKVSITTTPFEN 93
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
I++K + P A + G + GDRV+AVN ++ + + V+ ++N+ +HLL+
Sbjct: 39 IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 93
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
I++K + P A + G + GDRV+AVN ++ + + V+ ++N+ +HLL+
Sbjct: 42 IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 96
>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain
Containing Protein 7
Length = 100
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
IF+ V S A AGL GD++ VN ++ V+++ +S + LH++V
Sbjct: 38 IFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTSS-SRLHMMV 90
>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
D IF+ V+P PA+ L PGD+++ N + ++ + + V L++ + L++V
Sbjct: 24 DGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIV 79
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
I++K + P A + G + GDRV+AVN ++ + + V+ ++N+ +HLL+
Sbjct: 34 IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 88
>pdb|3CH8|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
D IF+ V+P PA+ L PGD+++ N + ++ + + V L++ + L++V
Sbjct: 25 DGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIV 80
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 35.8 bits (81), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS 53
IFI V P S A AGL GD+V+AVN+ D+ +++ V++++ +
Sbjct: 43 IFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTA 88
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 54
I++ V P S A GL GD+++ VN++++A + +AE V+ ++ S
Sbjct: 37 IYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSK 83
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
+ IFI V P A G L G R++ VN Q++ L + E VQL+++ L +LV
Sbjct: 44 EGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVC 101
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human
Scrib1
Length = 97
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
+ IFI V PAA AG+ GD+++ VN + + E V+ ++ + + + V
Sbjct: 34 EGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 89
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 102
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
I++ ++ + AA G L GD++++VN Q + +L + + V L +N+ + L V +E+
Sbjct: 41 IYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRES 100
Query: 67 DL 68
+
Sbjct: 101 SI 102
>pdb|1VB7|A Chain A, Solution Structure Of The Pdz Domain Of Pdz And Lim
Domain 2
Length = 94
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
I + V A AA L PGD +VA+N Q+ ++ +AE I+ S + L L
Sbjct: 32 IIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRL 83
>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 192
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA 55
+FI H+ A + GL GD +V +N +I+ + EV+ LI+
Sbjct: 112 LFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRTEKT 159
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65
I++K V A+ G L GD+++AVN Q++ + + E V +++ + + L+V+ +
Sbjct: 55 IYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSD 113
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
+ IFI V PAA AG+ GD+++ VN + + E V+ ++ + + + V
Sbjct: 46 EGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 101
>pdb|1Y7N|A Chain A, Solution Structure Of The Second Pdz Domain Of The Human
Neuronal Adaptor X11alpha
Length = 90
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 26/45 (57%)
Query: 19 AAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63
A G+ G R++ +N Q++ P+ ++V ++ N+ +H+ +P
Sbjct: 44 AERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMP 88
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad
In Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad
In Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
IFIK + P SPA G L GDR++++N + + + V+ LI+ + + L
Sbjct: 39 IFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIEL 91
>pdb|3PDV|A Chain A, Structure Of The Pdlim2 Pdz Domain In Complex With The
C-Terminal 6- Peptide Extension Of Ns1
Length = 89
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
I + V A A L PGD +VA+N ++ + +AE I+ SP+ L L
Sbjct: 27 IMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRL 78
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
+EP D I I + A G + GDR++A+N+ ++ P +E + L+Q + + L
Sbjct: 26 EEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETV-TL 84
Query: 61 VVPKEND 67
+ K+ D
Sbjct: 85 KIKKQTD 91
>pdb|2PA1|A Chain A, Structure Of The Pdz Domain Of Human Pdlim2 Bound To A
C-Terminal Extension From Human Beta-Tropomyosin
Length = 87
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
I + V A A L PGD +VA+N ++ + +AE I+ SP+ L L
Sbjct: 28 IMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRL 79
>pdb|3KHF|A Chain A, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
pdb|3KHF|B Chain B, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
Length = 99
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 13 VRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
V SPA AGL GD + +N +++ L + +VV+L+ S + L EN
Sbjct: 41 VEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRTTALEN 94
>pdb|2KV8|A Chain A, Solution Structure Ofrgs12 Pdz Domain
Length = 83
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 17 SPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
SPA GL GD+++AVN + + +VV+LI LH+++
Sbjct: 34 SPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVI 78
>pdb|2Z17|A Chain A, Crystal Sturcture Of Pdz Domain From Human Pleckstrin
Homology, Sec7
Length = 104
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 10 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
I ++ SPA AGL GD + +N + Y +VV LI++S L +
Sbjct: 52 ICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTI 101
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 33.5 bits (75), Expect = 0.029, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
+ + +V+ +PAA GL GD ++ N Q + ++ AE+ +++ + P+ L L
Sbjct: 385 VVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLAL 434
Score = 29.6 bits (65), Expect = 0.40, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADL 41
F+ V P+S AA AG+ GD + ++N + I+
Sbjct: 289 FVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF 321
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 33.5 bits (75), Expect = 0.030, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
+ + +V+ +PAA GL GD ++ N Q + ++ AE+ +++ + P+ L L
Sbjct: 385 VVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLAL 434
Score = 29.6 bits (65), Expect = 0.41, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADL 41
F+ V P+S AA AG+ GD + ++N + I+
Sbjct: 289 FVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF 321
>pdb|3CS0|A Chain A, Crystal Structure Of Degp24
Length = 448
Score = 33.5 bits (75), Expect = 0.030, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
+ + +V+ +PAA GL GD ++ N Q + ++ AE+ +++ + P+ L L
Sbjct: 385 VVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLAL 434
Score = 29.6 bits (65), Expect = 0.41, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADL 41
F+ V P+S AA AG+ GD + ++N + I+
Sbjct: 289 FVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF 321
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
+ + +V+ +PAA GL GD ++ N Q + ++ AE+ +++ + P+ L L
Sbjct: 385 VVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLAL 434
Score = 29.6 bits (65), Expect = 0.42, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADL 41
F+ V P+S AA AG+ GD + ++N + I+
Sbjct: 289 FVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF 321
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
+ + +V+ +PAA GL GD ++ N Q + ++ AE+ +++ + P+ L L
Sbjct: 385 VVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLAL 434
Score = 29.6 bits (65), Expect = 0.43, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADL 41
F+ V P+S AA AG+ GD + ++N + I+
Sbjct: 289 FVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF 321
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 33.5 bits (75), Expect = 0.032, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
+ + +V+ +PAA GL GD ++ N Q + ++ AE+ +++ + P+ L L
Sbjct: 385 VVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLAL 434
Score = 29.6 bits (65), Expect = 0.43, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADL 41
F+ V P+S AA AG+ GD + ++N + I+
Sbjct: 289 FVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF 321
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 33.5 bits (75), Expect = 0.033, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
+ + +V+ +PAA GL GD ++ N Q + ++ AE+ +++ + P+ L L
Sbjct: 385 VVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLAL 434
Score = 29.6 bits (65), Expect = 0.44, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADL 41
F+ V P+S AA AG+ GD + ++N + I+
Sbjct: 289 FVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF 321
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 33.5 bits (75), Expect = 0.033, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
+ + +V+ +PAA GL GD ++ N Q + ++ AE+ +++ + P+ L L
Sbjct: 385 VVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLAL 434
Score = 29.6 bits (65), Expect = 0.44, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADL 41
F+ V P+S AA AG+ GD + ++N + I+
Sbjct: 289 FVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF 321
>pdb|1UEQ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 123
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 54
DEP + + +K V P PAA G + GD +V +N + +A+VV+L Q+ P
Sbjct: 40 DEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVP 93
>pdb|2YT8|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3 (Neuron-
Specific X11l2 Protein) (Neuronal Munc18-1-Interacting
Protein 3) (Mint-3) (Adapter Protein X11gamma)
Length = 94
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 26/45 (57%)
Query: 19 AAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63
A G+ G R++ +N Q++ P+A +++L+ + +H+ +P
Sbjct: 40 AERGGIRVGHRIIEINGQSVVATPHARIIELLTEAYGEVHIKTMP 84
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 33.1 bits (74), Expect = 0.037, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 54
IF+ V SPAA GL GD+++ VNN ++ E V + + P
Sbjct: 33 IFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLP 79
>pdb|1U39|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 80
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 26/45 (57%)
Query: 19 AAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63
A G+ G R++ +N Q++ P+ ++V ++ N+ +H+ +P
Sbjct: 35 AERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMP 79
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule
Complex With Connexin-45 Peptide
Length = 468
Score = 33.1 bits (74), Expect = 0.039, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 54
IF+ V SPAA GL GD+++ VNN ++ E V + + P
Sbjct: 25 IFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLP 71
>pdb|2D92|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Inad-Like
Protein
Length = 108
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 21 AAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN-SPAYLHLLVV 62
+ GL+PGDR+V+VN + + AE V++++ P +HL +
Sbjct: 60 SGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGIC 102
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
Length = 101
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
I++ ++ + AA G L GD++++VN Q + +L + + V L +N+ + L V
Sbjct: 39 IYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 93
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 26/45 (57%)
Query: 19 AAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63
A G+ G R++ +N Q++ P+ ++V ++ N+ +H+ +P
Sbjct: 125 AERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMP 169
>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human
Zo-1 Maguk Protein
Length = 124
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 54
IF+ V SPAA GL GD+++ VNN ++ E V + + P
Sbjct: 53 IFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLP 99
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 12/59 (20%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 8 IFIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65
+++ + PA +G + GD ++ +N +T ++ ++ ++LI+N + L + E
Sbjct: 51 LYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRGE 109
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPK 64
I++K++ P A G L GDR++ VN +A EVV L++++ + LLV +
Sbjct: 35 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQ 94
Query: 65 E 65
E
Sbjct: 95 E 95
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558)
Length = 111
Score = 32.3 bits (72), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPK 64
I++K++ P A G L GDR++ VN +A EVV L++++ + LLV +
Sbjct: 41 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQ 100
Query: 65 E 65
E
Sbjct: 101 E 101
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 32.3 bits (72), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
+EP + I+I H+ P A G L GD +++V+ + + VVQL+Q + H+
Sbjct: 23 NEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVN 82
Query: 61 VVPKENDL 68
+ ++ L
Sbjct: 83 LTVRQTRL 90
>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3
pdb|3SHU|B Chain B, Crystal Structure Of Zo-1 Pdz3
Length = 95
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
IF+ V SPAA GL GD+++ VNN ++ E V + + P + ++ ++
Sbjct: 28 IFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKK 86
>pdb|3QIK|A Chain A, Crystal Structure Of The First Pdz Domain Of Prex1
Length = 101
Score = 32.3 bits (72), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 1 MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAY---L 57
++E + +K V+ S A AGL G ++ ++N + P++EV ++ S L
Sbjct: 34 IEEKNKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPL 93
Query: 58 HLLVVPK 64
LLV K
Sbjct: 94 RLLVATK 100
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
I++ ++ + AA G L GD++++VN Q + +L + + V L +N+ + L V
Sbjct: 49 IYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 103
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
Length = 194
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 54
IF+ V SPAA GL GD+++ VNN ++ E V + + P
Sbjct: 26 IFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLP 72
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate
Receptor Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate
Receptor Interacting Protein-1 (Grip1)
Length = 97
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
+ I VRP PA G + PGDR+++V+ + +AE + +++ LL+
Sbjct: 34 VVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLI 88
>pdb|1X5R|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Glutamate
Receptor Interacting Protein 2
Length = 112
Score = 32.0 bits (71), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 9 FIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
+ + P SPA GL+ GDRV+++N D E QL++++ A H +V+ E D
Sbjct: 48 LVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDA-ALAHKVVLEVEFD 106
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 32.0 bits (71), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
+ I VRP PA G + PGDR+++V+ + +AE + +++ LL+
Sbjct: 137 VVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLI 191
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 32.0 bits (71), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 9 FIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQNS 53
I ++ SPA G++ GDRV+A+N D + E QL+++S
Sbjct: 39 LISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS 84
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 3 EPMDTIFIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
+P D + I ++ S A G + GD+++A++N + + VQ++Q + L +
Sbjct: 132 KPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKI 191
Query: 62 VPKEN 66
E+
Sbjct: 192 RKDED 196
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 32.0 bits (71), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
++I+I + A G L GDR++AVNN + D+ + E V ++N+ ++L V
Sbjct: 33 NSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKV 89
>pdb|2I04|A Chain A, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I04|B Chain B, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 32.0 bits (71), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 54
DEP + + IK + PAA G + GD +V+VN+ + +A+VV++ Q+ P
Sbjct: 21 DEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIP 74
>pdb|1UJV|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Magi-2)
Length = 96
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 23 GLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 54
GL GD +V +N Q + +L + EVV ++++ P
Sbjct: 47 GLCEGDLIVEINQQNVQNLSHTEVVDILKDCP 78
>pdb|1P1E|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 101
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 9 FIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQNS 53
I ++ SPA G++ GDRV+A+N D + E QL+++S
Sbjct: 39 LISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS 84
>pdb|1V5Q|A Chain A, Solution Structure Of The Pdz Domain From Mouse
Glutamate Receptor Interacting Protein 1a-L (Grip1)
Homolog
Length = 122
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 9 FIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQNS 53
I ++ SPA G++ GDRV+A+N D + E QL+++S
Sbjct: 48 LISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS 93
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPK 64
I++K++ P A G L GDR++ VN + EVV L++++ + LLV +
Sbjct: 60 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQ 119
Query: 65 EN 66
E+
Sbjct: 120 ED 121
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human
Inad- Like Protein
Length = 117
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 2 DEPMDTIFIKHVRPHSPAAAA-GLVPGDRVVAVNNQTIADLPYAEVVQLIQNS 53
E + IFIK V SPA L GD+++ V+ + + ++E V+ I+N+
Sbjct: 46 GEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNA 98
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 15 PHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
P A AG+ GDR++ VN + + +VV LI+ L L V+ E++
Sbjct: 52 PGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVESE 104
>pdb|2KPK|A Chain A, Magi-1 Pdz1
pdb|2KPL|A Chain A, Magi-1 Pdz1 E6CT
Length = 129
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 54
DEP + + IK + PAA G + GD +V+VN+ + +A+VV++ Q+ P
Sbjct: 39 DEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIP 92
>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse
Harmonin
Length = 118
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 1 MDEPMDTIFIKHVRPHSPAAA-AGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS----PA 55
+D P+ + + V A G+V GD ++A+N + + D AE +Q +
Sbjct: 38 VDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGD 97
Query: 56 YLHLLVV---PKEND 67
++ L+V PKE D
Sbjct: 98 WIDLVVAVCPPKEYD 112
>pdb|1V5L|A Chain A, Solution Structure Of Pdz Domain Of Mouse
Alpha-Actinin-2 Associated Lim Protein
Length = 103
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
+ I + P S AAAA L PGD ++A++ + +A+ I+ + L L + E
Sbjct: 31 LVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETR 90
Query: 68 LLQ 70
L
Sbjct: 91 LWS 93
>pdb|2P3W|A Chain A, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
pdb|2P3W|B Chain B, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
Length = 112
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
I+++ V P+SP+ G+ GD +V VN + + D + L + SP LL V + ND
Sbjct: 37 IYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDSSELQEAVLTE-SPL---LLEVRRGND 92
Query: 68 LLQLTSDLIFH 78
DL+F
Sbjct: 93 ------DLLFS 97
>pdb|3HPK|A Chain A, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
pdb|3HPK|B Chain B, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
Length = 125
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 7 TIFIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQNSPA-----YLHLL 60
++I V ++PAA G V GD + VN ++I EV ++IQ Y L
Sbjct: 46 CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 105
Query: 61 VVPKENDLL 69
PK+ ++L
Sbjct: 106 ADPKQLEVL 114
>pdb|1OBZ|A Chain A, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1OBZ|B Chain B, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1V1T|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1V1T|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1YBO|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
With Syndecan Peptide
pdb|1YBO|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
With Syndecan Peptide
pdb|1W9E|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9E|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9O|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9O|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9Q|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
pdb|1W9Q|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
Length = 166
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIA 39
+ IF++ V+ +SPA+ GL GD+V+ +N + A
Sbjct: 27 NGIFVQLVQANSPASLVGLRFGDQVLQINGENCA 60
>pdb|2GZV|A Chain A, The Cystal Structure Of The Pdz Domain Of Human Pick1
(Casp Target)
Length = 114
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 7 TIFIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQ 51
++I V ++PAA G V GD + VN ++I EV ++IQ
Sbjct: 51 CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQ 96
>pdb|2V1W|A Chain A, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
pdb|2V1W|B Chain B, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
Length = 90
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
+ I V S AA A L PGD + A+N ++ + + E I+ +L L V E +
Sbjct: 28 LTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSVSRPEGE 87
>pdb|1N99|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
pdb|1N99|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
Length = 166
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIA 39
+ IF++ V+ +SPA+ GL GD+V+ +N + A
Sbjct: 27 NGIFVQLVQANSPASLVGLRFGDQVLQINGENCA 60
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 8 IFIKHVRPHSPA-AAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
I I + P PA GL GD ++AVN + D + E V ++ + VV
Sbjct: 55 ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV 110
>pdb|3QJM|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJM|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|C Chain C, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|D Chain D, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|E Chain E, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|F Chain F, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|G Chain G, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|H Chain H, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
Length = 115
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
+++ V A AGL GD ++ VN Q + + + +VV +I+ L + VV
Sbjct: 48 YLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV 101
>pdb|1Q3O|A Chain A, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3O|B Chain B, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3P|A Chain A, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
pdb|1Q3P|B Chain B, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
Length = 109
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
+++ V A AGL GD ++ VN Q + + + +VV +I+ L + VV
Sbjct: 48 YLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV 101
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
++I++ + A G L GDR++ VNN ++ ++ + E V +++N+ ++L V
Sbjct: 54 NSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKV 110
>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Inad-
Like Protein
Length = 129
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 8 IFIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65
I++K V P S A G + D++VAV+ I +VV++++N+ +HL +V ++
Sbjct: 48 IYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRK 106
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 8 IFIKHVRPHSPA-AAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
I I + P PA GL GD ++AVN + D + E V ++ + VV
Sbjct: 37 ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV 92
>pdb|2EDV|A Chain A, Solution Structure Of The Pdz Domain From Human Ferm And
Pdz Domain Containing 1
Length = 96
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 19 AAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
+A L PGD+++ +NN+ DL + V +++ + L + VV
Sbjct: 43 SAHGKLFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVV 86
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
Length = 436
Score = 30.0 bits (66), Expect = 0.34, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
I I V SPAA AGL D ++ VN + + AE+ +++ PA + L +V
Sbjct: 365 IKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKVLAAKPAIIALQIV 417
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 8 IFIKHVRPHSPA-AAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
I I + P PA GL GD ++AVN + D + E V ++ + VV
Sbjct: 30 ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV 85
>pdb|3L4F|D Chain D, Crystal Structure Of Betapix Coiled-Coil Domain And Shank
Pdz Complex
Length = 132
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
+++ V A AGL GD ++ VN Q + + + +VV +I+ L + VV
Sbjct: 68 YLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV 121
>pdb|2PKU|A Chain A, Solution Structure Of Pick1 Pdz In Complex With The
Carboxyl Tail Peptide Of Glur2
Length = 87
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 7 TIFIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQ 51
++I V ++PAA G V GD + VN ++I EV ++IQ
Sbjct: 29 CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQ 74
>pdb|3HPM|A Chain A, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
pdb|3HPM|B Chain B, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
Length = 111
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 8 IFIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQNSPA-----YLHLLV 61
++I V ++PAA G V GD + VN ++I EV ++IQ Y L
Sbjct: 33 LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQA 92
Query: 62 VPKENDLL 69
PK+ ++L
Sbjct: 93 DPKQLEVL 100
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia
Virus Type I) Binding Protein 3
Length = 139
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQ-LIQNSPAYLHLL 60
D+ I++ V PA AGL GD+++ VN + + + + + L + S + LL
Sbjct: 60 DKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLL 119
Query: 61 VVPK 64
V +
Sbjct: 120 VTRQ 123
>pdb|1FC7|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FC9|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FCF|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 29.6 bits (65), Expect = 0.42, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 15 PHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP-----AYLHLLVVPKENDLL 69
P PA AG GD +V V+ + L +V L+Q LH P L
Sbjct: 108 PGGPAEKAGARAGDVIVTVDGTAVKGLSLYDVSDLLQGEADSQVEVVLHAPGAPSNTRTL 167
Query: 70 QLT 72
QLT
Sbjct: 168 QLT 170
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
++I++ + A G L GD+++AVNN + ++ + E V ++N+ +++L V
Sbjct: 41 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKV 97
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 10 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63
+ V P A AG+ GDR++ VN + + +VV LI+ L L V+
Sbjct: 47 VSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLS 100
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQ-LIQNSPAYLHLL 60
D+ I++ V PA AGL GD+++ VN + + + + + L + S + LL
Sbjct: 39 DKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLL 98
Query: 61 VVPK 64
V +
Sbjct: 99 VTRQ 102
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
Length = 101
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 10 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63
+ V P A AG+ GDR++ VN + + +VV LI+ L L V+
Sbjct: 47 VSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLS 100
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQ-LIQNSPAYLHLL 60
D+ I++ V PA AGL GD+++ VN + + + + + L + S + LL
Sbjct: 41 DKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLL 100
Query: 61 VVPK 64
V +
Sbjct: 101 VTRQ 104
>pdb|2YUB|A Chain A, Solution Structure Of The Pdz Domain From Mouse Lim Domain
Kinase
Length = 118
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 7 TIFIKHV-RPH-SPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
T+ +K V R H SP + PGDR++ +N + L EV I+ + L LL+
Sbjct: 45 TVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLI 101
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
++I++ + A G L GD+++AVNN + ++ + E V ++N+ +++L V
Sbjct: 29 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKV 85
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
++I++ + A G L GD+++AVNN + ++ + E V ++N+ +++L V
Sbjct: 39 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKV 95
>pdb|3VAX|A Chain A, Crytal Structure Of Dnda From Streptomyces Lividans
pdb|3VAX|B Chain B, Crytal Structure Of Dnda From Streptomyces Lividans
Length = 400
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 33 VNNQTIADLPYAEVVQLIQNSPAYLHL 59
VNN+T P AE+ Q ++ +P YLH+
Sbjct: 168 VNNETGVIQPVAELAQQLRATPTYLHV 194
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 24/35 (68%)
Query: 27 GDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
GD+++AVNN + ++ + E V ++N+ +++L V
Sbjct: 60 GDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKV 94
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQ-LIQNSPAYLHLL 60
D+ I++ V PA AGL GD+++ VN + + + + + L + S + LL
Sbjct: 49 DKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLL 108
Query: 61 VV 62
V
Sbjct: 109 VT 110
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 24/35 (68%)
Query: 27 GDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
GD+++AVNN + ++ + E V ++N+ +++L V
Sbjct: 54 GDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKV 88
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQ-LIQNSPAYLHLL 60
D+ I++ V PA AGL GD+++ VN + + + + + L + S + LL
Sbjct: 49 DKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLL 108
Query: 61 VV 62
V
Sbjct: 109 VT 110
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 28.5 bits (62), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQ-LIQNSPAYLHLL 60
D+ I++ V PA AGL GD+++ VN + + + + + L + S + LL
Sbjct: 49 DKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLL 108
Query: 61 VV 62
V
Sbjct: 109 VT 110
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQ-LIQNSPAYLHLL 60
D+ I++ V PA AGL GD+++ VN + + + + + L + S + LL
Sbjct: 50 DKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLL 109
Query: 61 VV 62
V
Sbjct: 110 VT 111
>pdb|3NZI|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 334
Score = 28.5 bits (62), Expect = 0.92, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTI 38
+I V P +PA A GL D ++++N Q++
Sbjct: 257 YIIEVIPDTPAEAGGLKENDVIISINGQSV 286
>pdb|2JOA|A Chain A, Htra1 Bound To An Optimized Peptide: Nmr Assignment Of
Pdz Domain And Ligand Resonances
Length = 105
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTI 38
+I V P +PA A GL D ++++N Q++
Sbjct: 38 YIIEVIPDTPAEAGGLKENDVIISINGQSV 67
>pdb|3NUM|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 332
Score = 28.5 bits (62), Expect = 0.95, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTI 38
+I V P +PA A GL D ++++N Q++
Sbjct: 257 YIIEVIPDTPAEAGGLKENDVIISINGQSV 286
>pdb|2EEG|A Chain A, Solution Structure Of Pdz Domain Of Pdz And Lim Domain
Protein
Length = 94
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
+ I V S AA A L PGD + A+N ++ + + E I+ +L L V
Sbjct: 34 LTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSV 87
>pdb|1VAE|A Chain A, Solution Structure Of The Pdz Domain Of Mouse
Rhophilin-2
Length = 111
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 15 PHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN 52
PH A+ AG GD +V++ L +EV++L+++
Sbjct: 45 PHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKS 82
>pdb|2YTW|A Chain A, Solution Structure Of The Pdz-Domain Of Human Protease
Htra 1 Precursor
Length = 118
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68
+I V P +PA A GL D ++++N Q++ + +V +I+ + L+++V D+
Sbjct: 51 YIIEVIPDTPAEAGGLKENDVIISINGQSV--VSANDVSDVIKRE-STLNMVVRRGNEDI 107
Query: 69 L 69
+
Sbjct: 108 M 108
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 5 MDTIFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63
MD++ I + A +GL+ GD V+ +N I EV L+ + L +++P
Sbjct: 47 MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIP 106
Query: 64 KEN 66
Sbjct: 107 SSG 109
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 3 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTI 38
E + V P+SPA AGL GD + +N+ I
Sbjct: 279 EDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKI 314
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 16 HSPAAAAGLVPGDRVVAVNN---------QTIADLPYAEVVQLIQNSPAYLHLLVV 62
+S AG+ PGD +++ N QTIA E++ + P ++LLV+
Sbjct: 396 NSAGWRAGIRPGDIIISANKKPVTDVKSLQTIAQEKKKELLVQVLRGPGSMYLLVI 451
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 3 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTI 38
E + V P+SPA AGL GD + +N+ I
Sbjct: 279 EDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKI 314
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 16 HSPAAAAGLVPGDRVVAVNN---------QTIADLPYAEVVQLIQNSPAYLHLLVV 62
+S AG+ PGD +++ N QTIA E++ + P ++LLV+
Sbjct: 396 NSAGWRAGIRPGDIIISANKKPVTDVKSLQTIAQEKKKELLVQVLRGPGSMYLLVI 451
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 3 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTI 38
E + V P+SPA AGL GD + +N+ I
Sbjct: 279 EDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKI 314
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 16 HSPAAAAGLVPGDRVVAVNN---------QTIADLPYAEVVQLIQNSPAYLHLLVV 62
+S AG+ PGD +++ N QTIA E++ + P ++LLV+
Sbjct: 396 NSAGWRAGIRPGDIIISANKKPVTDVKSLQTIAQEKKKELLVQVLRGPGSMYLLVI 451
>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant)
Length = 354
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 3 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTI 38
E + V P+SPA AGL GD + +N+ I
Sbjct: 279 EDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKI 314
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
++I++ + A G L GD+++AVN+ ++ ++ + E V ++N+ +++L V
Sbjct: 33 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKV 89
>pdb|1FC6|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 15 PHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP-----AYLHLLVVPKENDLL 69
P PA AG GD +V V+ + +V L+Q LH P L
Sbjct: 108 PGGPAEKAGARAGDVIVTVDGTAVKGXSLYDVSDLLQGEADSQVEVVLHAPGAPSNTRTL 167
Query: 70 QLT 72
QLT
Sbjct: 168 QLT 170
>pdb|2PZD|A Chain A, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
pdb|2PZD|B Chain B, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
Length = 113
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIAD 40
+ I V SPA AGL PGD ++A+ Q + +
Sbjct: 37 VLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN 69
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
++I++ + A G L GD+++AVN+ + ++ + E V ++N+ +++L V
Sbjct: 33 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEAVTALKNTSDFVYLKV 89
>pdb|3O46|A Chain A, Crystal Structure Of The Pdz Domain Of Mpp7
Length = 93
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
DE I + + A +GL+ GD + VN + D E++Q++ S +
Sbjct: 24 DEQTGAIIVARIXRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFK 83
Query: 61 VVPKEND 67
++P +
Sbjct: 84 IIPGSKE 90
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
++I++ + A G L GD+++AVN+ + ++ + E V ++N+ +++L V
Sbjct: 33 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAVTALKNTSDFVYLKV 89
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
++I++ + A G L GD+++AVN+ + ++ + E V ++N+ +++L V
Sbjct: 33 NSIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAVTALKNTSDFVYLKV 89
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIAD 40
+ I V SPA AGL PGD ++A+ Q + +
Sbjct: 258 VLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN 290
>pdb|1QAU|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 112
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 19 AAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
A +GL+ GD ++AVN++ + DL Y +++++ + H++++
Sbjct: 39 AEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLI 83
>pdb|1WIF|A Chain A, The Solution Structure Of Rsgi Ruh-020, A Pdz Domain Of
Hypothetical Protein From Mouse
Length = 126
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 10 IKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQN--------SPAYLHLL 60
I H+ AA+ G++ PGD +++V + + E ++L+QN AY L
Sbjct: 53 ISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRGFL 112
Query: 61 VVPKE 65
+P+E
Sbjct: 113 EIPQE 117
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
++I++ + A G L GD+++AVN+ + ++ + E V ++N+ +++L
Sbjct: 28 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEAVTALKNTSDFVYL 82
>pdb|1QAV|B Chain B, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 115
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 19 AAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
A +GL+ GD ++AVN++ + DL Y +++++ + H++++
Sbjct: 41 AEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLI 85
>pdb|1B8Q|A Chain A, Solution Structure Of The Extended Neuronal Nitric Oxide
Synthase Pdz Domain Complexed With An Associated
Peptide
Length = 127
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 19 AAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
A +GL+ GD ++AVN++ + DL Y +++++ + H++++
Sbjct: 46 AEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLI 90
>pdb|1SOT|A Chain A, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|B Chain B, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|C Chain C, Crystal Structure Of The Degs Stress Sensor
Length = 320
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 3 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQ-TIADLPYAEVVQLIQNSPAYLHLLV 61
+ + I + V P PAA AG+ D +++V+N+ I+ L + V I+ P + +V
Sbjct: 236 DQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETXDQVAEIR--PGSVIPVV 293
Query: 62 VPKENDLLQL 71
V +++ L L
Sbjct: 294 VXRDDKQLTL 303
>pdb|3BPU|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human
Membrane Associated Guanylate Kinase, C677s And C709s
Double Mutant
Length = 88
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 21 AAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL-LVVPKENDL 68
+ GL GD +V VN + + L + +VV ++ SP + L+V ++ L
Sbjct: 40 SRGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQTRL 88
>pdb|1TE0|A Chain A, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
pdb|1TE0|B Chain B, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
Length = 318
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 3 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQ 36
+ + I + V P PAA AG+ D +++V+N+
Sbjct: 241 DQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNK 274
>pdb|1SOZ|A Chain A, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|B Chain B, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|C Chain C, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1VCW|A Chain A, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|B Chain B, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|C Chain C, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|2R3Y|A Chain A, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|B Chain B, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|C Chain C, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
Length = 314
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 3 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQ 36
+ + I + V P PAA AG+ D +++V+N+
Sbjct: 236 DQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNK 269
>pdb|1WHD|A Chain A, Solution Structure Of The Pdz Domain Of Rgs3
Length = 100
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
+ ++ V PA AGL D V+ +N + + E+ I++ P+ + LLV
Sbjct: 38 VRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLV 91
>pdb|3GCN|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Omp Peptide (Yqf)
pdb|3GCO|A Chain A, Crystal Structure Of Degs H198p/d320a Mutant Modified By
Dfp In Complex With Dnrdgnvyqf Omp Peptide
pdb|3GDS|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Dnrdgnvyyf Peptide
pdb|3GDU|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDV|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
Length = 340
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQ 36
+ I + V P PAA AG+ D +++V+N+
Sbjct: 264 LQGIVVNEVSPDGPAANAGIQVNDLIISVDNK 295
>pdb|2F5Y|A Chain A, Crystal Structure Of The Pdz Domain From Human Rgs-3
pdb|2F5Y|B Chain B, Crystal Structure Of The Pdz Domain From Human Rgs-3
Length = 91
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
+ ++ V PA AGL D V+ +N + + E+ I++ P+ + LLV
Sbjct: 26 VRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLV 79
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 27 GDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLL 69
GD+++AVN+ + D+ + + V ++N+ ++L V N L
Sbjct: 206 GDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAYL 248
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,308,524
Number of Sequences: 62578
Number of extensions: 76397
Number of successful extensions: 378
Number of sequences better than 100.0: 182
Number of HSP's better than 100.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 206
Number of HSP's gapped (non-prelim): 198
length of query: 81
length of database: 14,973,337
effective HSP length: 50
effective length of query: 31
effective length of database: 11,844,437
effective search space: 367177547
effective search space used: 367177547
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)