Query psy5713
Match_columns 81
No_of_seqs 116 out of 2097
Neff 10.1
Searched_HMMs 46136
Date Sat Aug 17 00:44:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5713.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5713hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13180 PDZ_2: PDZ domain; PD 99.5 1.8E-13 3.8E-18 69.4 8.6 61 6-68 14-76 (82)
2 PF00595 PDZ: PDZ domain (Also 99.5 3.7E-13 8E-18 68.0 7.5 57 6-62 25-81 (81)
3 cd00991 PDZ_archaeal_metallopr 99.5 9.8E-13 2.1E-17 66.3 9.0 63 4-68 8-72 (79)
4 cd00136 PDZ PDZ domain, also c 99.4 1.3E-11 2.9E-16 60.5 8.7 56 6-61 13-69 (70)
5 cd00987 PDZ_serine_protease PD 99.4 1.5E-11 3.3E-16 62.8 9.1 61 5-67 23-85 (90)
6 cd00989 PDZ_metalloprotease PD 99.4 1.8E-11 3.9E-16 61.3 8.9 61 5-67 11-72 (79)
7 smart00228 PDZ Domain present 99.3 4.1E-11 8.9E-16 60.5 9.2 59 6-64 26-84 (85)
8 cd00992 PDZ_signaling PDZ doma 99.3 3.4E-11 7.3E-16 60.6 8.7 56 6-61 26-81 (82)
9 cd00988 PDZ_CTP_protease PDZ d 99.3 8.3E-11 1.8E-15 59.6 9.1 60 5-64 12-72 (85)
10 cd00986 PDZ_LON_protease PDZ d 99.3 5.9E-11 1.3E-15 59.6 8.4 61 5-68 7-69 (79)
11 cd00990 PDZ_glycyl_aminopeptid 99.3 3.7E-11 8.1E-16 60.3 7.4 62 4-68 10-71 (80)
12 PRK10139 serine endoprotease; 99.2 4.7E-10 1E-14 72.1 9.8 61 6-68 390-450 (455)
13 TIGR01713 typeII_sec_gspC gene 99.1 6.8E-10 1.5E-14 66.9 8.5 63 4-68 189-253 (259)
14 PRK10139 serine endoprotease; 99.1 1E-09 2.2E-14 70.5 9.3 62 5-68 289-352 (455)
15 KOG3550|consensus 99.1 5.3E-10 1.1E-14 62.2 6.7 63 2-64 111-174 (207)
16 TIGR00054 RIP metalloprotease 99.1 1E-09 2.2E-14 70.0 8.4 61 6-68 203-264 (420)
17 PRK10942 serine endoprotease; 99.1 1.2E-09 2.6E-14 70.5 8.7 61 6-68 408-468 (473)
18 TIGR02038 protease_degS peripl 99.1 1.4E-09 3.1E-14 67.9 8.6 61 6-68 278-340 (351)
19 PLN00049 carboxyl-terminal pro 99.1 2.4E-09 5.3E-14 67.7 9.6 61 7-67 103-164 (389)
20 TIGR02037 degP_htrA_DO peripla 99.1 2.2E-09 4.7E-14 68.5 9.5 61 6-68 362-424 (428)
21 PRK10898 serine endoprotease; 99.1 2.1E-09 4.6E-14 67.2 9.2 62 5-68 278-341 (353)
22 TIGR00225 prc C-terminal pepti 99.1 2.2E-09 4.9E-14 66.6 9.2 63 5-67 61-124 (334)
23 TIGR02037 degP_htrA_DO peripla 99.1 1.7E-09 3.7E-14 69.0 8.6 62 5-68 256-319 (428)
24 PRK10942 serine endoprotease; 99.1 2.7E-09 5.9E-14 68.9 9.4 62 5-68 310-373 (473)
25 PRK10779 zinc metallopeptidase 99.0 2.9E-09 6.4E-14 68.4 8.9 60 7-68 222-282 (449)
26 PRK10779 zinc metallopeptidase 99.0 4.1E-09 8.9E-14 67.7 8.4 59 8-68 128-188 (449)
27 KOG3553|consensus 99.0 9.4E-10 2E-14 57.2 3.8 59 4-63 57-115 (124)
28 COG0793 Prc Periplasmic protea 98.9 1.1E-08 2.4E-13 65.1 8.6 60 6-65 112-172 (406)
29 TIGR00054 RIP metalloprotease 98.8 3.1E-08 6.7E-13 63.3 7.3 61 5-67 127-187 (420)
30 TIGR03279 cyano_FeS_chp putati 98.8 5E-08 1.1E-12 62.3 7.6 53 10-66 2-55 (433)
31 KOG3209|consensus 98.8 1.8E-08 3.9E-13 67.2 5.4 56 10-65 782-838 (984)
32 TIGR02860 spore_IV_B stage IV 98.7 1.4E-07 2.9E-12 59.9 8.6 62 5-68 104-174 (402)
33 KOG3580|consensus 98.7 9.4E-09 2E-13 67.8 2.6 77 5-81 428-506 (1027)
34 PRK11186 carboxy-terminal prot 98.7 1.4E-07 3E-12 63.2 7.5 60 5-64 254-320 (667)
35 KOG3209|consensus 98.6 2.6E-07 5.6E-12 62.0 6.8 60 4-63 921-981 (984)
36 KOG3580|consensus 98.5 2.5E-07 5.4E-12 61.3 5.8 64 6-69 219-283 (1027)
37 KOG3549|consensus 98.5 3.2E-07 7E-12 57.3 5.5 58 5-62 79-137 (505)
38 KOG3606|consensus 98.5 5.5E-07 1.2E-11 54.6 6.3 65 3-67 191-256 (358)
39 COG0265 DegQ Trypsin-like seri 98.5 1.5E-06 3.2E-11 54.3 8.5 63 4-68 268-332 (347)
40 KOG3129|consensus 98.5 1.1E-06 2.3E-11 51.4 6.9 61 8-68 141-203 (231)
41 PF04495 GRASP55_65: GRASP55/6 98.4 2E-06 4.4E-11 47.6 6.8 62 4-67 41-104 (138)
42 PF14685 Tricorn_PDZ: Tricorn 98.3 5.6E-06 1.2E-10 42.6 6.6 60 5-66 11-81 (88)
43 KOG1892|consensus 98.3 1.4E-06 3.1E-11 60.3 4.9 64 5-68 959-1023(1629)
44 KOG3651|consensus 98.3 4.1E-06 8.9E-11 51.6 6.4 56 7-62 31-87 (429)
45 KOG3551|consensus 98.3 1.5E-06 3.3E-11 54.9 4.1 56 6-61 110-166 (506)
46 PRK09681 putative type II secr 98.3 5.2E-06 1.1E-10 50.6 6.2 55 12-68 210-269 (276)
47 KOG3552|consensus 98.2 2.8E-06 6.1E-11 58.6 5.0 58 6-64 75-132 (1298)
48 COG3031 PulC Type II secretory 98.1 1.4E-05 3E-10 47.8 6.2 64 3-68 204-269 (275)
49 KOG3542|consensus 98.1 5E-06 1.1E-10 56.1 4.5 59 3-62 559-617 (1283)
50 KOG3532|consensus 98.1 2.5E-05 5.3E-10 52.8 7.1 57 5-63 397-453 (1051)
51 KOG3571|consensus 98.0 1.8E-05 4E-10 51.6 4.9 60 3-62 274-337 (626)
52 PF12812 PDZ_1: PDZ-like domai 97.9 8.4E-05 1.8E-09 37.4 5.7 46 8-55 32-77 (78)
53 KOG1320|consensus 97.9 0.0001 2.2E-09 48.0 7.1 61 6-68 398-460 (473)
54 KOG0609|consensus 97.9 4.9E-05 1.1E-09 49.8 5.7 58 7-64 147-205 (542)
55 COG3975 Predicted protease wit 97.8 4E-05 8.6E-10 50.2 4.7 34 3-36 459-492 (558)
56 COG3480 SdrC Predicted secrete 97.8 0.00024 5.2E-09 44.2 7.5 56 6-64 130-187 (342)
57 KOG1421|consensus 97.7 0.00025 5.5E-09 48.1 6.6 61 5-68 302-363 (955)
58 KOG0606|consensus 97.6 0.00017 3.7E-09 50.9 5.4 54 9-62 661-714 (1205)
59 KOG3605|consensus 97.3 0.00079 1.7E-08 45.5 5.1 56 8-63 675-733 (829)
60 KOG3938|consensus 97.3 0.00045 9.7E-09 42.1 3.6 61 3-63 146-209 (334)
61 KOG3834|consensus 96.7 0.0087 1.9E-07 38.8 6.1 62 3-65 12-74 (462)
62 KOG1421|consensus 96.7 0.016 3.4E-07 39.9 7.0 51 1-54 857-907 (955)
63 KOG1738|consensus 96.5 0.0054 1.2E-07 41.3 4.1 58 5-62 224-282 (638)
64 COG0750 Predicted membrane-ass 96.3 0.05 1.1E-06 34.4 7.6 52 10-63 133-188 (375)
65 KOG3605|consensus 96.3 0.0028 6E-08 43.0 1.9 53 9-61 759-811 (829)
66 KOG2921|consensus 94.3 0.13 2.9E-06 33.4 4.5 47 4-52 218-265 (484)
67 PF11874 DUF3394: Domain of un 92.3 0.4 8.6E-06 28.0 4.1 31 4-34 120-150 (183)
68 KOG4407|consensus 92.1 0.087 1.9E-06 39.0 1.4 59 5-63 142-200 (1973)
69 KOG3834|consensus 89.1 1.2 2.6E-05 29.4 4.4 51 10-63 113-166 (462)
70 KOG4371|consensus 83.1 2 4.4E-05 31.6 3.5 60 4-63 1268-1328(1332)
71 COG5233 GRH1 Peripheral Golgi 78.1 1.9 4.1E-05 27.6 1.9 31 9-39 66-96 (417)
72 KOG4371|consensus 76.9 4.7 0.0001 29.9 3.7 46 23-68 1186-1231(1332)
73 COG1625 Fe-S oxidoreductase, r 68.3 5.3 0.00012 26.4 2.2 33 9-41 4-37 (414)
74 COG0260 PepB Leucyl aminopepti 55.3 13 0.00029 25.2 2.4 27 12-39 304-330 (485)
75 PF04027 DUF371: Domain of unk 52.8 19 0.0004 20.1 2.4 40 25-65 27-67 (132)
76 PF06838 Met_gamma_lyase: Meth 48.7 16 0.00034 24.1 1.9 23 24-48 93-115 (403)
77 COG4100 Cystathionine beta-lya 48.3 20 0.00043 23.3 2.2 25 22-48 101-126 (416)
78 KOG0792|consensus 47.3 9.6 0.00021 28.3 0.9 40 15-54 757-798 (1144)
79 TIGR00739 yajC preprotein tran 47.2 17 0.00037 18.4 1.6 16 21-36 35-50 (84)
80 PRK00913 multifunctional amino 44.9 25 0.00054 23.9 2.4 27 12-39 305-331 (483)
81 PRK05585 yajC preprotein trans 44.3 18 0.0004 19.2 1.5 17 21-37 50-66 (106)
82 KOG1703|consensus 44.2 6.7 0.00014 26.2 -0.2 57 7-63 22-78 (479)
83 PRK05886 yajC preprotein trans 43.1 20 0.00044 19.2 1.5 15 22-36 37-51 (109)
84 PRK06531 yajC preprotein trans 43.0 18 0.0004 19.5 1.4 15 22-36 35-49 (113)
85 KOG1320|consensus 42.2 52 0.0011 22.4 3.6 32 6-38 287-318 (473)
86 cd00433 Peptidase_M17 Cytosol 41.7 28 0.00062 23.5 2.3 27 12-39 291-317 (468)
87 PRK03760 hypothetical protein; 41.7 29 0.00063 18.7 2.0 22 9-31 92-113 (117)
88 COG1862 YajC Preprotein transl 40.4 25 0.00054 18.5 1.6 16 22-37 42-57 (97)
89 PRK05015 aminopeptidase B; Pro 40.2 36 0.00079 22.8 2.6 26 13-39 243-268 (424)
90 KOG4407|consensus 38.4 17 0.00036 28.1 1.0 35 8-42 98-132 (1973)
91 PF07591 PT-HINT: Pretoxin HIN 34.4 27 0.00059 19.1 1.2 20 19-38 71-91 (130)
92 COG0461 PyrE Orotate phosphori 33.8 1.1E+02 0.0024 18.4 4.0 32 24-55 109-140 (201)
93 PTZ00414 10 kDa heat shock pro 33.3 80 0.0017 16.7 2.9 22 10-31 49-70 (100)
94 COG2090 Uncharacterized protei 32.8 97 0.0021 17.5 4.5 36 25-62 33-69 (141)
95 PF06543 Lac_bphage_repr: Lact 31.5 53 0.0012 15.0 1.7 14 26-39 19-32 (49)
96 cd04459 Rho_CSD Rho_CSD: Rho p 31.1 42 0.00091 16.4 1.5 17 17-33 34-50 (68)
97 PTZ00412 leucyl aminopeptidase 30.8 49 0.0011 23.1 2.2 16 24-39 361-376 (569)
98 COG4043 Preprotein translocase 30.4 51 0.0011 17.6 1.8 35 19-53 29-67 (111)
99 PRK05090 hypothetical protein; 29.9 91 0.002 16.3 3.0 49 4-52 7-57 (95)
100 PRK09219 xanthine phosphoribos 29.9 1.2E+02 0.0026 17.8 3.4 32 24-55 114-145 (189)
101 PF02699 YajC: Preprotein tran 29.8 19 0.00041 18.1 0.1 15 22-36 35-49 (82)
102 PF00883 Peptidase_M17: Cytoso 29.1 24 0.00053 22.5 0.5 25 14-39 138-162 (311)
103 COG5569 Uncharacterized conser 28.3 1E+02 0.0022 16.4 3.2 20 10-31 72-91 (108)
104 TIGR00251 conserved hypothetic 27.7 97 0.0021 15.9 4.6 62 4-66 4-69 (87)
105 TIGR03595 Obg_CgtA_exten Obg f 27.5 64 0.0014 15.6 1.8 17 19-36 49-65 (69)
106 COG4273 Uncharacterized conser 27.0 68 0.0015 17.9 1.9 31 9-39 49-79 (135)
107 PF04312 DUF460: Protein of un 25.5 1.4E+02 0.003 16.9 4.2 49 6-61 30-83 (138)
108 PF09269 DUF1967: Domain of un 24.5 58 0.0013 15.7 1.3 17 19-36 49-65 (69)
109 PF15057 DUF4537: Domain of un 24.3 59 0.0013 17.7 1.4 22 12-33 44-65 (124)
110 KOG3369|consensus 23.0 50 0.0011 19.5 1.0 24 19-42 47-70 (199)
111 KOG2597|consensus 22.7 1E+02 0.0022 21.4 2.5 29 10-39 324-352 (513)
112 TIGR01744 XPRTase xanthine pho 21.9 1.8E+02 0.004 17.0 4.6 32 24-55 114-145 (191)
113 PF01455 HupF_HypC: HupF/HypC 21.4 1.2E+02 0.0026 14.7 2.3 27 24-50 38-64 (68)
114 PF10077 DUF2314: Uncharacteri 21.2 1.1E+02 0.0024 16.9 2.1 24 8-31 64-87 (133)
115 cd02791 MopB_CT_Nitrate-R-NapA 20.9 1.4E+02 0.003 15.5 2.5 18 18-35 43-60 (122)
116 COG4138 BtuD ABC-type cobalami 20.8 2.1E+02 0.0046 17.4 4.1 43 5-47 23-71 (248)
117 PRK02268 hypothetical protein; 20.7 1.4E+02 0.003 16.9 2.4 22 12-33 24-45 (141)
118 PRK14533 groES co-chaperonin G 20.6 1.4E+02 0.0031 15.4 3.2 8 24-31 54-61 (91)
119 PRK04021 hypothetical protein; 20.6 1.5E+02 0.0032 15.4 3.3 62 4-66 5-70 (92)
120 PF02643 DUF192: Uncharacteriz 20.5 58 0.0013 17.2 0.9 23 8-31 83-105 (108)
121 cd03484 MutL_Trans_hPMS_2_like 20.3 1.7E+02 0.0037 16.1 5.5 35 6-40 43-77 (142)
No 1
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=99.54 E-value=1.8e-13 Score=69.42 Aligned_cols=61 Identities=30% Similarity=0.536 Sum_probs=53.8
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL 68 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~ 68 (81)
.+++|..|.++|||+++||++||.|++|||.++. +..++...+... +.++.+++.|++...
T Consensus 14 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~--~~~~~~~~l~~~~~g~~v~l~v~R~g~~~ 76 (82)
T PF13180_consen 14 GGVVVVSVIPGSPAAKAGLQPGDIILAINGKPVN--SSEDLVNILSKGKPGDTVTLTVLRDGEEL 76 (82)
T ss_dssp SSEEEEEESTTSHHHHTTS-TTEEEEEETTEESS--SHHHHHHHHHCSSTTSEEEEEEEETTEEE
T ss_pred CeEEEEEeCCCCcHHHCCCCCCcEEEEECCEEcC--CHHHHHHHHHhCCCCCEEEEEEEECCEEE
Confidence 5899999999999999999999999999999998 899999988543 369999999987765
No 2
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.49 E-value=3.7e-13 Score=67.99 Aligned_cols=57 Identities=37% Similarity=0.605 Sum_probs=53.2
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEE
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~ 62 (81)
.+++|..+.++++|+++||+.||.|++|||.++.++++.++...++..++.+.|++.
T Consensus 25 ~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~V~ 81 (81)
T PF00595_consen 25 KGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLTVQ 81 (81)
T ss_dssp EEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEEEE
T ss_pred CCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEEEC
Confidence 489999999999999999999999999999999999999999999998888888763
No 3
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.49 E-value=9.8e-13 Score=66.30 Aligned_cols=63 Identities=22% Similarity=0.361 Sum_probs=55.2
Q ss_pred CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713 4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL 68 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~ 68 (81)
...|+.|..|.++++|+++||++||.|++|||.++. ++.++...+... +..+.+++.|++...
T Consensus 8 ~~~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~v~--~~~d~~~~l~~~~~g~~v~l~v~r~g~~~ 72 (79)
T cd00991 8 AVAGVVIVGVIVGSPAENAVLHTGDVIYSINGTPIT--TLEDFMEALKPTKPGEVITVTVLPSTTKL 72 (79)
T ss_pred cCCcEEEEEECCCChHHhcCCCCCCEEEEECCEEcC--CHHHHHHHHhcCCCCCEEEEEEEECCEEE
Confidence 456899999999999999999999999999999999 889999888764 468889998877544
No 4
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=99.38 E-value=1.3e-11 Score=60.50 Aligned_cols=56 Identities=32% Similarity=0.539 Sum_probs=49.6
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEE
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP-AYLHLLV 61 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~~~l~v 61 (81)
.+++|..+.+++||+.+||++||.|++|||.++.+++..++...++... ..+.+++
T Consensus 13 ~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 13 GGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 3899999999999999999999999999999999777799999998765 5677664
No 5
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.38 E-value=1.5e-11 Score=62.83 Aligned_cols=61 Identities=30% Similarity=0.489 Sum_probs=53.3
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKEND 67 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~ 67 (81)
..|++|..+.++++|.++|+++||.|++|||.++. ++.++...+... +..+.+.+.|++..
T Consensus 23 ~~g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~--~~~~~~~~l~~~~~~~~i~l~v~r~g~~ 85 (90)
T cd00987 23 TKGVLVASVDPGSPAAKAGLKPGDVILAVNGKPVK--SVADLRRALAELKPGDKVTLTVLRGGKE 85 (90)
T ss_pred CCEEEEEEECCCCHHHHcCCCcCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 45899999999999999999999999999999999 888888888664 46888998887644
No 6
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.37 E-value=1.8e-11 Score=61.29 Aligned_cols=61 Identities=36% Similarity=0.479 Sum_probs=52.5
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeCCCc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS-PAYLHLLVVPKEND 67 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~-~~~~~l~v~~~~~~ 67 (81)
...++|..+.++++|+++||++||+|++|||.++. ++.++...+... +..+.+++.|++..
T Consensus 11 ~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~--~~~~~~~~l~~~~~~~~~l~v~r~~~~ 72 (79)
T cd00989 11 PIEPVIGEVVPGSPAAKAGLKAGDRILAINGQKIK--SWEDLVDAVQENPGKPLTLTVERNGET 72 (79)
T ss_pred ccCcEEEeECCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHHCCCceEEEEEEECCEE
Confidence 34588999999999999999999999999999999 888988888764 46888888887654
No 7
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=99.34 E-value=4.1e-11 Score=60.45 Aligned_cols=59 Identities=32% Similarity=0.487 Sum_probs=52.1
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 64 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~ 64 (81)
.+++|..+.++++|+++||++||.|++||+.++.+++..+....+...+..+.+.+.|+
T Consensus 26 ~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i~r~ 84 (85)
T smart00228 26 GGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVLRG 84 (85)
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeC
Confidence 68999999999999999999999999999999998878777777776656888888775
No 8
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=99.34 E-value=3.4e-11 Score=60.58 Aligned_cols=56 Identities=38% Similarity=0.599 Sum_probs=50.1
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEE
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v 61 (81)
.+++|..+.++++|..+|+++||+|++|||.++..+++.++...+......+.+.+
T Consensus 26 ~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~v 81 (82)
T cd00992 26 GGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLTV 81 (82)
T ss_pred CCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEEE
Confidence 57999999999999999999999999999999998899999999987656666554
No 9
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.31 E-value=8.3e-11 Score=59.63 Aligned_cols=60 Identities=30% Similarity=0.486 Sum_probs=52.1
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeC
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS-PAYLHLLVVPK 64 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~-~~~~~l~v~~~ 64 (81)
..+++|..+.+++||.++||++||.|++|||.++.+++..++...+... +..+.+++.|+
T Consensus 12 ~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 12 DGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred CCeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 4678999999999999999999999999999999966558888888653 46888998887
No 10
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.30 E-value=5.9e-11 Score=59.64 Aligned_cols=61 Identities=26% Similarity=0.436 Sum_probs=52.3
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~--~~~~~~l~v~~~~~~~ 68 (81)
..|+.|..|.++++|.. +|++||.|++|||.++. ++.++...+.. .+..+.+++.|++...
T Consensus 7 ~~Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~~~v~l~v~r~g~~~ 69 (79)
T cd00986 7 YHGVYVTSVVEGMPAAG-KLKAGDHIIAVDGKPFK--EAEELIDYIQSKKEGDTVKLKVKREEKEL 69 (79)
T ss_pred ecCEEEEEECCCCchhh-CCCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECCEEE
Confidence 46899999999999997 79999999999999999 88899888874 2368899998877654
No 11
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.30 E-value=3.7e-11 Score=60.32 Aligned_cols=62 Identities=27% Similarity=0.333 Sum_probs=49.4
Q ss_pred CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
...++.|..|.++++|+.+||++||+|++|||.++. ++.++...+ ..+..+.+++.|++...
T Consensus 10 ~~~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~--~~~~~l~~~-~~~~~v~l~v~r~g~~~ 71 (80)
T cd00990 10 EEGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVD--ALQDRLKEY-QAGDPVELTVFRDDRLI 71 (80)
T ss_pred cCCcEEEEEECCCChHHHhCCCCCCEEEEECCEEhH--HHHHHHHhc-CCCCEEEEEEEECCEEE
Confidence 345799999999999999999999999999999998 555544433 23368888888876544
No 12
>PRK10139 serine endoprotease; Provisional
Probab=99.18 E-value=4.7e-10 Score=72.12 Aligned_cols=61 Identities=31% Similarity=0.463 Sum_probs=55.4
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
.|++|..|.++++|.++||++||.|++|||+++. +++++...+...++.+.+.+.|++...
T Consensus 390 ~Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~v~l~v~R~g~~~ 450 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVN--SIAEMRKVLAAKPAIIALQIVRGNESI 450 (455)
T ss_pred CceEEEEeCCCChHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhCCCeEEEEEEECCEEE
Confidence 5799999999999999999999999999999999 899999999876678889999987654
No 13
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=99.14 E-value=6.8e-10 Score=66.91 Aligned_cols=63 Identities=21% Similarity=0.159 Sum_probs=55.0
Q ss_pred CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713 4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL 68 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~ 68 (81)
...|+.|..+.++++++++||+.||.|++|||+++. ++.++...+... +..+.+++.|++...
T Consensus 189 ~~~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i~--~~~~~~~~l~~~~~~~~v~l~V~R~G~~~ 253 (259)
T TIGR01713 189 KLEGYRLNPGKDPSLFYKSGLQDGDIAVALNGLDLR--DPEQAFQALQMLREETNLTLTVERDGQRE 253 (259)
T ss_pred ceeEEEEEecCCCCHHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCeEEEEEEECCEEE
Confidence 346999999999999999999999999999999999 888888888764 258999999988654
No 14
>PRK10139 serine endoprotease; Provisional
Probab=99.12 E-value=1e-09 Score=70.55 Aligned_cols=62 Identities=24% Similarity=0.396 Sum_probs=54.5
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~--~~~~~~l~v~~~~~~~ 68 (81)
..|++|..|.++|||+++||++||+|++|||+++. ++.++...+.. .+..+.+++.|++...
T Consensus 289 ~~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~V~--s~~dl~~~l~~~~~g~~v~l~V~R~G~~~ 352 (455)
T PRK10139 289 QRGAFVSEVLPNSGSAKAGVKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLGLLRNGKPL 352 (455)
T ss_pred CCceEEEEECCCChHHHCCCCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 46899999999999999999999999999999999 89999888865 3468899999887654
No 15
>KOG3550|consensus
Probab=99.11 E-value=5.3e-10 Score=62.23 Aligned_cols=63 Identities=24% Similarity=0.379 Sum_probs=56.6
Q ss_pred CCCCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713 2 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 64 (81)
Q Consensus 2 ~~~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~ 64 (81)
.+++.+++|+.+.||+.|++.| |+.||.++++||..+++..++....+++...+.+.+.+.-.
T Consensus 111 keqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvklvvryt 174 (207)
T KOG3550|consen 111 KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVKLVVRYT 174 (207)
T ss_pred cccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEEEEEecC
Confidence 4688999999999999999987 99999999999999999999999999988878888877543
No 16
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=99.09 E-value=1e-09 Score=69.97 Aligned_cols=61 Identities=25% Similarity=0.473 Sum_probs=53.7
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEEEeCCCcc
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP-AYLHLLVVPKENDL 68 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~~~l~v~~~~~~~ 68 (81)
.++.|..|.++|||+++|+++||+|++|||+++. ++.++...+.... ..+.+++.|++...
T Consensus 203 ~g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V~--s~~dl~~~l~~~~~~~v~l~v~R~g~~~ 264 (420)
T TIGR00054 203 IEPVLSDVTPNSPAEKAGLKEGDYIQSINGEKLR--SWTDFVSAVKENPGKSMDIKVERNGETL 264 (420)
T ss_pred cCcEEEEECCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHhCCCCceEEEEEECCEEE
Confidence 3688999999999999999999999999999999 8999999887643 57889998887654
No 17
>PRK10942 serine endoprotease; Provisional
Probab=99.09 E-value=1.2e-09 Score=70.51 Aligned_cols=61 Identities=26% Similarity=0.539 Sum_probs=55.3
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
.+++|..|.++|+|+++||++||.|++||++++. ++.++.+.+...+..+.+++.|++...
T Consensus 408 ~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~--s~~dl~~~l~~~~~~v~l~V~R~g~~~ 468 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIGLKKGDVIIGANQQPVK--NIAELRKILDSKPSVLALNIQRGDSSI 468 (473)
T ss_pred CCeEEEEeCCCChHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhCCCeEEEEEEECCEEE
Confidence 4789999999999999999999999999999999 899999999886678889999987654
No 18
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=99.09 E-value=1.4e-09 Score=67.94 Aligned_cols=61 Identities=23% Similarity=0.378 Sum_probs=54.2
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCCcc
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKENDL 68 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~--~~~~~~l~v~~~~~~~ 68 (81)
.|++|..|.+++||+++||++||+|++|||+++. ++.++...+.. .+..+.+++.|++...
T Consensus 278 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~--s~~dl~~~l~~~~~g~~v~l~v~R~g~~~ 340 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAGILVRDVILKYDGKDVI--GAEELMDRIAETRPGSKVMVTVLRQGKQL 340 (351)
T ss_pred ccceEeecCCCChHHHCCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 6899999999999999999999999999999999 88999888865 3468999999987654
No 19
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=99.08 E-value=2.4e-09 Score=67.70 Aligned_cols=61 Identities=23% Similarity=0.388 Sum_probs=52.6
Q ss_pred ceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeCCCc
Q psy5713 7 TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS-PAYLHLLVVPKEND 67 (81)
Q Consensus 7 ~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~-~~~~~l~v~~~~~~ 67 (81)
+++|..|.++|||.++||++||+|++|||+++.++++.++...+... +..+.+++.|++..
T Consensus 103 g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g~~ 164 (389)
T PLN00049 103 GLVVVAPAPGGPAARAGIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGPET 164 (389)
T ss_pred cEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 79999999999999999999999999999999987788888777653 35888888887643
No 20
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=99.08 E-value=2.2e-09 Score=68.53 Aligned_cols=61 Identities=30% Similarity=0.516 Sum_probs=54.8
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL 68 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~ 68 (81)
.|++|..|.++|+|.++||++||.|++|||+++. ++.++.+++... ++.+.+.+.|++...
T Consensus 362 ~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~--s~~d~~~~l~~~~~g~~v~l~v~R~g~~~ 424 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVS--SVAELRKVLDRAKKGGRVALLILRGGATI 424 (428)
T ss_pred CceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 6899999999999999999999999999999999 889999988753 468999999987654
No 21
>PRK10898 serine endoprotease; Provisional
Probab=99.08 E-value=2.1e-09 Score=67.22 Aligned_cols=62 Identities=24% Similarity=0.467 Sum_probs=54.0
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~--~~~~~~l~v~~~~~~~ 68 (81)
..|++|..|.+++||+++||+.||+|++|||+++. ++.++...+.. .+..+.+++.|++...
T Consensus 278 ~~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~--s~~~l~~~l~~~~~g~~v~l~v~R~g~~~ 341 (353)
T PRK10898 278 LQGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAI--SALETMDQVAEIRPGSVIPVVVMRDDKQL 341 (353)
T ss_pred CCeEEEEEECCCChHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 47899999999999999999999999999999999 88888877764 3368999999987654
No 22
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=99.08 E-value=2.2e-09 Score=66.59 Aligned_cols=63 Identities=25% Similarity=0.447 Sum_probs=52.9
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc-CCCeEEEEEEeCCCc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN-SPAYLHLLVVPKEND 67 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~-~~~~~~l~v~~~~~~ 67 (81)
.++++|..|.+++||+++||++||+|++|||.++.+++..++...+.. .+..+.+++.|++..
T Consensus 61 ~~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~ 124 (334)
T TIGR00225 61 DGEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGKS 124 (334)
T ss_pred CCEEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCCC
Confidence 357889999999999999999999999999999997766777777754 346889999887643
No 23
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=99.07 E-value=1.7e-09 Score=69.00 Aligned_cols=62 Identities=27% Similarity=0.431 Sum_probs=54.3
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~ 68 (81)
..|++|..|.++|||+++||+.||.|++|||.++. ++.++...+... +..+.+++.|++...
T Consensus 256 ~~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~i~--~~~~~~~~l~~~~~g~~v~l~v~R~g~~~ 319 (428)
T TIGR02037 256 QRGALVAQVLPGSPAEKAGLKAGDVILSVNGKPIS--SFADLRRAIGTLKPGKKVTLGILRKGKEK 319 (428)
T ss_pred CCceEEEEccCCCChHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 46899999999999999999999999999999999 888888887653 368999999987654
No 24
>PRK10942 serine endoprotease; Provisional
Probab=99.06 E-value=2.7e-09 Score=68.95 Aligned_cols=62 Identities=24% Similarity=0.398 Sum_probs=54.4
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~ 68 (81)
..|++|..|.+++||+++||+.||+|+++||+++. ++.++...+... +..+.+.+.|++...
T Consensus 310 ~~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~V~--s~~dl~~~l~~~~~g~~v~l~v~R~G~~~ 373 (473)
T PRK10942 310 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPIS--SFAALRAQVGTMPVGSKLTLGLLRDGKPV 373 (473)
T ss_pred CCceEEEEECCCChHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCeEE
Confidence 46899999999999999999999999999999999 889998888653 368899999887654
No 25
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=99.04 E-value=2.9e-09 Score=68.36 Aligned_cols=60 Identities=32% Similarity=0.546 Sum_probs=52.8
Q ss_pred ceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEEEeCCCcc
Q psy5713 7 TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP-AYLHLLVVPKENDL 68 (81)
Q Consensus 7 ~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~~~l~v~~~~~~~ 68 (81)
++.|..|.++|||+++|+++||+|+++||+++. ++.++...+.... +.+.+++.|++...
T Consensus 222 ~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V~--s~~dl~~~l~~~~~~~v~l~v~R~g~~~ 282 (449)
T PRK10779 222 EPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLT--QWQTFVTLVRDNPGKPLALEIERQGSPL 282 (449)
T ss_pred CcEEEeeCCCCHHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhCCCCEEEEEEEECCEEE
Confidence 478999999999999999999999999999999 8999998887643 58889999887654
No 26
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=99.00 E-value=4.1e-09 Score=67.70 Aligned_cols=59 Identities=22% Similarity=0.289 Sum_probs=50.3
Q ss_pred eEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEEeCCCcc
Q psy5713 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPKENDL 68 (81)
Q Consensus 8 ~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~--~~~~l~v~~~~~~~ 68 (81)
..|..|.++|||+++|+++||+|+++||+++. ++.++...+.... .++.+++.|+++..
T Consensus 128 ~lV~~V~~~SpA~kAGLk~GDvI~~vnG~~V~--~~~~l~~~v~~~~~g~~v~v~v~R~gk~~ 188 (449)
T PRK10779 128 PVVGEIAPNSIAAQAQIAPGTELKAVDGIETP--DWDAVRLALVSKIGDESTTITVAPFGSDQ 188 (449)
T ss_pred ccccccCCCCHHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhhccCCceEEEEEeCCccc
Confidence 46889999999999999999999999999999 7888877665432 57999999987644
No 27
>KOG3553|consensus
Probab=98.97 E-value=9.4e-10 Score=57.23 Aligned_cols=59 Identities=27% Similarity=0.377 Sum_probs=49.5
Q ss_pred CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy5713 4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~ 63 (81)
.+.|++|.+|..||||+.+||+.+|+|+++||....-.+++...+.+++. +.+.+.+.|
T Consensus 57 tD~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~k~-~vl~mLVaR 115 (124)
T KOG3553|consen 57 TDKGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRITKE-EVLRMLVAR 115 (124)
T ss_pred CCccEEEEEeccCChhhhhcceecceEEEecCceeEEEEhHHHHHHhhHh-HHHHHHHHh
Confidence 46899999999999999999999999999999998877899988888764 444444443
No 28
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.94 E-value=1.1e-08 Score=65.11 Aligned_cols=60 Identities=25% Similarity=0.483 Sum_probs=54.1
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEEEeCC
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP-AYLHLLVVPKE 65 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~~~l~v~~~~ 65 (81)
+++.|....+++||+++|+++||.|++|||.++.+.+..++.+.++... ..++|++.|.+
T Consensus 112 ~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~ 172 (406)
T COG0793 112 GGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAG 172 (406)
T ss_pred CCcEEEecCCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcC
Confidence 7888999999999999999999999999999999888888888887765 59999999963
No 29
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=98.81 E-value=3.1e-08 Score=63.29 Aligned_cols=61 Identities=23% Similarity=0.337 Sum_probs=51.4
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
..+..|..|.++|||+++|+++||+|+++||+++. ++.++...+.....++.+.+.|+++.
T Consensus 127 ~~g~~V~~V~~~SpA~~AGL~~GDvI~~vng~~v~--~~~dl~~~ia~~~~~v~~~I~r~g~~ 187 (420)
T TIGR00054 127 EVGPVIELLDKNSIALEAGIEPGDEILSVNGNKIP--GFKDVRQQIADIAGEPMVEILAEREN 187 (420)
T ss_pred CCCceeeccCCCCHHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhhcccceEEEEEecCc
Confidence 35778999999999999999999999999999999 88888887765556777777775443
No 30
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=98.79 E-value=5e-08 Score=62.31 Aligned_cols=53 Identities=28% Similarity=0.355 Sum_probs=44.4
Q ss_pred EEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEE-eCCC
Q psy5713 10 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV-PKEN 66 (81)
Q Consensus 10 V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~-~~~~ 66 (81)
|..|.|+|+|+++|+++||+|++|||+++. +|.++...+.. ..+.+.+. +++.
T Consensus 2 I~~V~pgSpAe~AGLe~GD~IlsING~~V~--Dw~D~~~~l~~--e~l~L~V~~rdGe 55 (433)
T TIGR03279 2 ISAVLPGSIAEELGFEPGDALVSINGVAPR--DLIDYQFLCAD--EELELEVLDANGE 55 (433)
T ss_pred cCCcCCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHhcC--CcEEEEEEcCCCe
Confidence 567899999999999999999999999999 88998877743 56777775 4443
No 31
>KOG3209|consensus
Probab=98.77 E-value=1.8e-08 Score=67.23 Aligned_cols=56 Identities=39% Similarity=0.622 Sum_probs=52.5
Q ss_pred EEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713 10 IKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65 (81)
Q Consensus 10 V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~ 65 (81)
|..+.+||||++.| |+.||.|+++||..+-+++|.++.++++..+..++|++...+
T Consensus 782 iGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVtLtIip~e 838 (984)
T KOG3209|consen 782 IGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVTLTIIPPE 838 (984)
T ss_pred ccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceEEEEEcChh
Confidence 67899999999999 999999999999999999999999999999999999998654
No 32
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=98.75 E-value=1.4e-07 Score=59.94 Aligned_cols=62 Identities=23% Similarity=0.398 Sum_probs=50.9
Q ss_pred CCceEEEeeC--------CCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVR--------PHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP-AYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~--------~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~~~l~v~~~~~~~ 68 (81)
.+|+.|.... .++||..+|++.||.|++|||.++. ++.++...+.... ..+.+.+.|++...
T Consensus 104 t~GVlVvg~~~v~~~~g~~~SPAa~AGLq~GDiIvsING~~V~--s~~DL~~iL~~~~g~~V~LtV~R~Ge~~ 174 (402)
T TIGR02860 104 TKGVLVVGFSDIETEKGKIHSPGEEAGIQIGDRILKINGEKIK--NMDDLANLINKAGGEKLTLTIERGGKII 174 (402)
T ss_pred cCEEEEEEEEcccccCCCCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHhCCCCeEEEEEEECCEEE
Confidence 5677775542 3589999999999999999999999 8999998887654 68889998887654
No 33
>KOG3580|consensus
Probab=98.70 E-value=9.4e-09 Score=67.76 Aligned_cols=77 Identities=26% Similarity=0.390 Sum_probs=57.9
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEEeCCCcceeeecccccccCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPKENDLLQLTSDLIFHDFY 81 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~--~~~~l~v~~~~~~~~~~~~~~~~~~~~ 81 (81)
+-|+||.+|..|+||.+.||+.||+|+++|.++..++..++....|...+ ..+++...+....+-.+..+.+.++||
T Consensus 428 DVGIFVaGvqegspA~~eGlqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtilaQ~k~Dvyr~iv~s~vGDSFy 506 (1027)
T KOG3580|consen 428 DVGIFVAGVQEGSPAEQEGLQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTILAQSKADVYRDIVASGVGDSFY 506 (1027)
T ss_pred ceeEEEeecccCCchhhccccccceeEEeccccchhhhHHHHHHHHhcCCCCcEEeehhhhhhHHHHHHHhccCCceeE
Confidence 45899999999999999999999999999999999998999888887665 455555444433333333444444443
No 34
>PRK11186 carboxy-terminal protease; Provisional
Probab=98.68 E-value=1.4e-07 Score=63.19 Aligned_cols=60 Identities=27% Similarity=0.429 Sum_probs=49.3
Q ss_pred CCceEEEeeCCCCHHhhC-CCCCCCEEEEEC--CE---EcCCCCHHHHHHHHHcCC-CeEEEEEEeC
Q psy5713 5 MDTIFIKHVRPHSPAAAA-GLVPGDRVVAVN--NQ---TIADLPYAEVVQLIQNSP-AYLHLLVVPK 64 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~-gl~~gd~i~~in--g~---~~~~~~~~~~~~~l~~~~-~~~~l~v~~~ 64 (81)
.++++|..|.||+||+++ ||++||.|++|| |. .+.+++..++...++... ..+.|++.|.
T Consensus 254 ~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~ 320 (667)
T PRK11186 254 DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA 320 (667)
T ss_pred CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence 456889999999999998 899999999999 43 445677888888887654 5889998873
No 35
>KOG3209|consensus
Probab=98.59 E-value=2.6e-07 Score=61.96 Aligned_cols=60 Identities=18% Similarity=0.352 Sum_probs=52.7
Q ss_pred CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy5713 4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~ 63 (81)
.+=+++|.++..++||.+.| ++.||+|+.|||.+..+++|..+..++++.+..+.+.+.|
T Consensus 921 ynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~gg~~vll~Lr~ 981 (984)
T KOG3209|consen 921 YNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQGGRRVLLLLRR 981 (984)
T ss_pred cccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHHhCCeEEEEEecc
Confidence 44569999999999999999 9999999999999999999999999999876666555544
No 36
>KOG3580|consensus
Probab=98.55 E-value=2.5e-07 Score=61.30 Aligned_cols=64 Identities=27% Similarity=0.467 Sum_probs=57.4
Q ss_pred CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcce
Q psy5713 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLL 69 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~~ 69 (81)
..+||..+...+.|.+.| |+.||.|++|||....+++..+..+++..+.+.+.+.+.|+.+...
T Consensus 219 SqIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL~lvVlRD~~qtL 283 (1027)
T KOG3580|consen 219 SQIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDSQQTL 283 (1027)
T ss_pred chhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhccCceEEEEEecCCcee
Confidence 347788888889888887 9999999999999999999999999999998999999999877663
No 37
>KOG3549|consensus
Probab=98.52 E-value=3.2e-07 Score=57.31 Aligned_cols=58 Identities=26% Similarity=0.375 Sum_probs=53.5
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEE
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~ 62 (81)
+-+++|+++..+-.|+..| |-.||.|++|||..+..+.++++.++++..++.+++++.
T Consensus 79 n~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGdeVtlTV~ 137 (505)
T KOG3549|consen 79 NLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGDEVTLTVK 137 (505)
T ss_pred CccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCCEEEEEeH
Confidence 4568899999999999999 999999999999999999999999999999998888874
No 38
>KOG3606|consensus
Probab=98.52 E-value=5.5e-07 Score=54.58 Aligned_cols=65 Identities=26% Similarity=0.398 Sum_probs=57.0
Q ss_pred CCCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 3 EPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 3 ~~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
++.-|++|+.+.||+.|...| |..+|+++.+||+.+.+.+.+++..++-.....+.+++...++.
T Consensus 191 ekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvANshNLIiTVkPANQR 256 (358)
T KOG3606|consen 191 EKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVANSHNLIITVKPANQR 256 (358)
T ss_pred cccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhcccceEEEecccccc
Confidence 455689999999999999999 88999999999999999999999999988778888888754443
No 39
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.5e-06 Score=54.33 Aligned_cols=63 Identities=25% Similarity=0.371 Sum_probs=54.4
Q ss_pred CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEEeCCCcc
Q psy5713 4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPKENDL 68 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~--~~~~l~v~~~~~~~ 68 (81)
...|++|..+.+++||.++|++.||.|+++||.++. +..++...+.... ..+.+.+.|+++..
T Consensus 268 ~~~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~--~~~~l~~~v~~~~~g~~v~~~~~r~g~~~ 332 (347)
T COG0265 268 VAAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVA--SLSDLVAAVASNRPGDEVALKLLRGGKER 332 (347)
T ss_pred CCCceEEEecCCCChHHHcCCCCCCEEEEECCEEcc--CHHHHHHHHhccCCCCEEEEEEEECCEEE
Confidence 356799999999999999999999999999999999 8888888776553 58999999986554
No 40
>KOG3129|consensus
Probab=98.49 E-value=1.1e-06 Score=51.39 Aligned_cols=61 Identities=21% Similarity=0.414 Sum_probs=47.8
Q ss_pred eEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCC-HHHHHHHHHcCC-CeEEEEEEeCCCcc
Q psy5713 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLP-YAEVVQLIQNSP-AYLHLLVVPKENDL 68 (81)
Q Consensus 8 ~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~-~~~~~~~l~~~~-~~~~l~v~~~~~~~ 68 (81)
++|..|.|+|||+.+||+.||.|+.+.+....+.. ...+....+... ..+.+++.|.+...
T Consensus 141 a~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v 203 (231)
T KOG3129|consen 141 AVVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQKV 203 (231)
T ss_pred EEEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCEE
Confidence 57899999999999999999999999988877443 444444444443 68889999988765
No 41
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=98.44 E-value=2e-06 Score=47.58 Aligned_cols=62 Identities=26% Similarity=0.424 Sum_probs=45.7
Q ss_pred CCCceEEEeeCCCCHHhhCCCCC-CCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEEEeCCCc
Q psy5713 4 PMDTIFIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQNSP-AYLHLLVVPKEND 67 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~gl~~-gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~~~l~v~~~~~~ 67 (81)
...++.|..|.|+|||+.+||.+ .|.|+.+++.... +.+++...+.... .++.+.+......
T Consensus 41 ~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~--~~~~l~~~v~~~~~~~l~L~Vyns~~~ 104 (138)
T PF04495_consen 41 EEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLD--DEDDLFELVEANENKPLQLYVYNSKTD 104 (138)
T ss_dssp CCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE----STCHHHHHHHHTTTS-EEEEEEETTTT
T ss_pred ccceEEEeEecCCCHHHHCCccccccEEEEccceecC--CHHHHHHHHHHcCCCcEEEEEEECCCC
Confidence 35578899999999999999998 6999999998888 6678888887665 5888888865443
No 42
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=98.34 E-value=5.6e-06 Score=42.55 Aligned_cols=60 Identities=27% Similarity=0.361 Sum_probs=40.6
Q ss_pred CCceEEEeeCCC--------CHHhhCC--CCCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEEEeCCC
Q psy5713 5 MDTIFIKHVRPH--------SPAAAAG--LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP-AYLHLLVVPKEN 66 (81)
Q Consensus 5 ~~~~~V~~v~~~--------s~a~~~g--l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~~~l~v~~~~~ 66 (81)
+++..|.++.++ ||....| ++.||.|++|||+++. .-.++..+|.... ..+.|++.+.+.
T Consensus 11 ~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~--~~~~~~~lL~~~agk~V~Ltv~~~~~ 81 (88)
T PF14685_consen 11 NGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVT--ADANPYRLLEGKAGKQVLLTVNRKPG 81 (88)
T ss_dssp TTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-B--TTB-HHHHHHTTTTSEEEEEEE-STT
T ss_pred CCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECC--CCCCHHHHhcccCCCEEEEEEecCCC
Confidence 467788888776 6666766 6699999999999998 5566777776554 689999987664
No 43
>KOG1892|consensus
Probab=98.30 E-value=1.4e-06 Score=60.27 Aligned_cols=64 Identities=20% Similarity=0.338 Sum_probs=58.1
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
.-|++|.+|.+|++|+..| |..||.++++||+..-+.+.+....++.+.+..+++.|...+..+
T Consensus 959 klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~vV~leVaKqgAiy 1023 (1629)
T KOG1892|consen 959 KLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGNVVHLEVAKQGAIY 1023 (1629)
T ss_pred ccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccCCeEEEehhhhhhHH
Confidence 3489999999999999999 999999999999999999999999999999899999988766544
No 44
>KOG3651|consensus
Probab=98.30 E-value=4.1e-06 Score=51.65 Aligned_cols=56 Identities=30% Similarity=0.405 Sum_probs=50.9
Q ss_pred ceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEE
Q psy5713 7 TIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62 (81)
Q Consensus 7 ~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~ 62 (81)
.++|..|..++||.+.| ++.||.|+.|||+.+.+.+--++.+.++...+.+.+.+-
T Consensus 31 ClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~IhyN 87 (429)
T KOG3651|consen 31 CLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKIHYN 87 (429)
T ss_pred eEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEEEeh
Confidence 47889999999999999 999999999999999999999999999988788888763
No 45
>KOG3551|consensus
Probab=98.26 E-value=1.5e-06 Score=54.90 Aligned_cols=56 Identities=27% Similarity=0.348 Sum_probs=50.4
Q ss_pred CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEE
Q psy5713 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v 61 (81)
-++.|+++.+|-.|++.+ |..||.|+++||....+.++++..+.+++.++.+.+.+
T Consensus 110 MPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~lev 166 (506)
T KOG3551|consen 110 MPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVLLEV 166 (506)
T ss_pred CceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceeeeee
Confidence 357889999999999999 99999999999999999999999999999987666655
No 46
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=98.25 E-value=5.2e-06 Score=50.58 Aligned_cols=55 Identities=27% Similarity=0.406 Sum_probs=42.8
Q ss_pred eeCCC---CHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEEeCCCcc
Q psy5713 12 HVRPH---SPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPKENDL 68 (81)
Q Consensus 12 ~v~~~---s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~--~~~~l~v~~~~~~~ 68 (81)
.+.|+ ..-.++||+.||.+++|||.++. +..+...++.... ..+.+++.|++...
T Consensus 210 rl~Pgkd~~lF~~~GLq~GDva~sING~dL~--D~~qa~~l~~~L~~~tei~ltVeRdGq~~ 269 (276)
T PRK09681 210 AVKPGADRSLFDASGFKEGDIAIALNQQDFT--DPRAMIALMRQLPSMDSIQLTVLRKGARH 269 (276)
T ss_pred EECCCCcHHHHHHcCCCCCCEEEEeCCeeCC--CHHHHHHHHHHhccCCeEEEEEEECCEEE
Confidence 45565 35677899999999999999999 6676555555433 68999999998765
No 47
>KOG3552|consensus
Probab=98.23 E-value=2.8e-06 Score=58.55 Aligned_cols=58 Identities=26% Similarity=0.541 Sum_probs=52.4
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 64 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~ 64 (81)
.+++|..|.+|+|+.-. |++||+|+.|||.+++...++.+..+++.+...+.|+|.+.
T Consensus 75 rPviVr~VT~GGps~GK-L~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV~qP 132 (1298)
T KOG3552|consen 75 RPVIVRFVTEGGPSIGK-LQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTVCQP 132 (1298)
T ss_pred CceEEEEecCCCCcccc-ccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEEecc
Confidence 57889999999998743 99999999999999999999999999999988999998863
No 48
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=98.14 E-value=1.4e-05 Score=47.77 Aligned_cols=64 Identities=23% Similarity=0.272 Sum_probs=51.7
Q ss_pred CCCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEEeCCCcc
Q psy5713 3 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPKENDL 68 (81)
Q Consensus 3 ~~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~--~~~~l~v~~~~~~~ 68 (81)
++-.|..+.-..+++.-+..||+.||..++||+.... +.+++..+++... ..+.+++.|+|..-
T Consensus 204 eki~Gyr~~pgkd~slF~~sglq~GDIavaiNnldlt--dp~~m~~llq~l~~m~s~qlTv~R~G~rh 269 (275)
T COG3031 204 EKIEGYRFEPGKDGSLFYKSGLQRGDIAVAINNLDLT--DPEDMFRLLQMLRNMPSLQLTVIRRGKRH 269 (275)
T ss_pred CceEEEEecCCCCcchhhhhcCCCcceEEEecCcccC--CHHHHHHHHHhhhcCcceEEEEEecCccc
Confidence 3445666666777888899999999999999999999 7888887776544 68899999988653
No 49
>KOG3542|consensus
Probab=98.12 E-value=5e-06 Score=56.13 Aligned_cols=59 Identities=32% Similarity=0.452 Sum_probs=49.2
Q ss_pred CCCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEE
Q psy5713 3 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62 (81)
Q Consensus 3 ~~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~ 62 (81)
+...|++|..|.||+.|.+.|++.||+|+.+||+..+..+..-+..+++.. -.+.+++.
T Consensus 559 EkGfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfenis~~KA~eiLrnn-thLtltvK 617 (1283)
T KOG3542|consen 559 EKGFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFENISAKKAEEILRNN-THLTLTVK 617 (1283)
T ss_pred cccceeEEeeecCCchHHHhhhhhhhhhhhccccchhhhhHHHHHHHhcCC-ceEEEEEe
Confidence 445689999999999999999999999999999999988888888888765 34444443
No 50
>KOG3532|consensus
Probab=98.08 E-value=2.5e-05 Score=52.79 Aligned_cols=57 Identities=28% Similarity=0.366 Sum_probs=49.0
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~ 63 (81)
+.-+.|..|.++++|.++.+.+||.+++|||+|+. +..++.+.++.....+.+.+++
T Consensus 397 ~~~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~~~~l~~~ 453 (1051)
T KOG3532|consen 397 NRAVKVCTVEDNSLADKAAFKPGDVLVAINNVPIR--SERQATRFLQSTTGDLTVLVER 453 (1051)
T ss_pred ceEEEEEEecCCChhhHhcCCCcceEEEecCccch--hHHHHHHHHHhcccceEEEEee
Confidence 34466889999999999999999999999999999 8899999998876666666554
No 51
>KOG3571|consensus
Probab=97.97 E-value=1.8e-05 Score=51.59 Aligned_cols=60 Identities=20% Similarity=0.437 Sum_probs=51.7
Q ss_pred CCCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC---CCeEEEEEE
Q psy5713 3 EPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS---PAYLHLLVV 62 (81)
Q Consensus 3 ~~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~---~~~~~l~v~ 62 (81)
..++|++|..+.+++.-+.-| +.+||-|++||....++++.+++...|+.. +.++.+++.
T Consensus 274 rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~gPi~ltvA 337 (626)
T KOG3571|consen 274 RGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPGPIKLTVA 337 (626)
T ss_pred CCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccCCCeEEEEe
Confidence 467899999999999888888 999999999999999999999999988753 356777664
No 52
>PF12812 PDZ_1: PDZ-like domain
Probab=97.91 E-value=8.4e-05 Score=37.37 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=38.7
Q ss_pred eEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC
Q psy5713 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA 55 (81)
Q Consensus 8 ~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~ 55 (81)
.++.....++++...++..|..|.+||++++. +.+++.+.+++.++
T Consensus 32 gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~--~Ld~f~~vvk~ipd 77 (78)
T PF12812_consen 32 GVYVAVSGGSLAFAGGISKGFIITSVNGKPTP--DLDDFIKVVKKIPD 77 (78)
T ss_pred EEEEEecCCChhhhCCCCCCeEEEeECCcCCc--CHHHHHHHHHhCCC
Confidence 45556678888888779999999999999999 89999998887543
No 53
>KOG1320|consensus
Probab=97.89 E-value=0.0001 Score=47.99 Aligned_cols=61 Identities=26% Similarity=0.427 Sum_probs=49.9
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEEeCCCcc
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPKENDL 68 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~--~~~~l~v~~~~~~~ 68 (81)
+++.++.|.|++++...++..||+|.++||+++. +..++...+..+. +++.+...+..+..
T Consensus 398 q~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~--n~~~l~~~i~~~~~~~~v~vl~~~~~e~~ 460 (473)
T KOG1320|consen 398 QLVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVK--NLKHLYELIEECSTEDKVAVLDRRSAEDA 460 (473)
T ss_pred eEEEEEEeccCCCcccccccCCCEEEEECCEEee--chHHHHHHHHhcCcCceEEEEEecCccce
Confidence 4688999999999999999999999999999999 7888999888764 36655555544443
No 54
>KOG0609|consensus
Probab=97.89 E-value=4.9e-05 Score=49.80 Aligned_cols=58 Identities=22% Similarity=0.416 Sum_probs=53.7
Q ss_pred ceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713 7 TIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 64 (81)
Q Consensus 7 ~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~ 64 (81)
.++|..+..|+.+.+.| |..||.|+.+||..+.+.+..++..+++...+.+++.+...
T Consensus 147 ~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~itfkiiP~ 205 (542)
T KOG0609|consen 147 KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSITFKIIPS 205 (542)
T ss_pred ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEEEEEccc
Confidence 68899999999999999 99999999999999998899999999999888999888755
No 55
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=97.84 E-value=4e-05 Score=50.24 Aligned_cols=34 Identities=41% Similarity=0.551 Sum_probs=31.0
Q ss_pred CCCCceEEEeeCCCCHHhhCCCCCCCEEEEECCE
Q psy5713 3 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQ 36 (81)
Q Consensus 3 ~~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~ 36 (81)
...++.+|..|.++|||..|||.+||+|++|||.
T Consensus 459 ~~~g~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~ 492 (558)
T COG3975 459 SEGGHEKITFVFPGGPAYKAGLSPGDKIVAINGI 492 (558)
T ss_pred ccCCeeEEEecCCCChhHhccCCCccEEEEEcCc
Confidence 3456778999999999999999999999999999
No 56
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=97.81 E-value=0.00024 Score=44.16 Aligned_cols=56 Identities=16% Similarity=0.312 Sum_probs=47.9
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeC
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPK 64 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~ 64 (81)
.|+++..+..++++... |..||.|.++||.++. +..++...+... ++.+++.+.|.
T Consensus 130 ~gvyv~~v~~~~~~~gk-l~~gD~i~avdg~~f~--s~~e~i~~v~~~k~Gd~VtI~~~r~ 187 (342)
T COG3480 130 AGVYVLSVIDNSPFKGK-LEAGDTIIAVDGEPFT--SSDELIDYVSSKKPGDEVTIDYERH 187 (342)
T ss_pred eeEEEEEccCCcchhce-eccCCeEEeeCCeecC--CHHHHHHHHhccCCCCeEEEEEEec
Confidence 47888888889888754 9999999999999999 899999988754 37999999863
No 57
>KOG1421|consensus
Probab=97.68 E-value=0.00025 Score=48.14 Aligned_cols=61 Identities=25% Similarity=0.460 Sum_probs=51.5
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS-PAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~-~~~~~l~v~~~~~~~ 68 (81)
.+-++|..|.+++|+.+. |++||.++++|+.-+. ++.++.+.+... ++.+.|++.|++...
T Consensus 302 tgmLvV~~vL~~gpa~k~-Le~GDillavN~t~l~--df~~l~~iLDegvgk~l~LtI~Rggqel 363 (955)
T KOG1421|consen 302 TGMLVVETVLPEGPAEKK-LEPGDILLAVNSTCLN--DFEALEQILDEGVGKNLELTIQRGGQEL 363 (955)
T ss_pred ceeEEEEEeccCCchhhc-cCCCcEEEEEcceehH--HHHHHHHHHhhccCceEEEEEEeCCEEE
Confidence 344788999999999986 9999999999988887 788888887654 579999999988755
No 58
>KOG0606|consensus
Probab=97.62 E-value=0.00017 Score=50.85 Aligned_cols=54 Identities=31% Similarity=0.401 Sum_probs=48.3
Q ss_pred EEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEE
Q psy5713 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62 (81)
Q Consensus 9 ~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~ 62 (81)
.|..|.+++||..+|++.+|.|+.+||.++.++.+.++++.+...++.+.+.+.
T Consensus 661 ~v~sv~egsPA~~agls~~DlIthvnge~v~gl~H~ev~~Lll~~gn~v~~~tt 714 (1205)
T KOG0606|consen 661 SVGSVEEGSPAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLLKSGNKVTLRTT 714 (1205)
T ss_pred eeeeecCCCCccccCCCccceeEeccCcccchhhHHHHHHHHHhcCCeeEEEee
Confidence 477899999999999999999999999999999999999999887776666543
No 59
>KOG3605|consensus
Probab=97.28 E-value=0.00079 Score=45.49 Aligned_cols=56 Identities=25% Similarity=0.477 Sum_probs=44.1
Q ss_pred eEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC--eEEEEEEe
Q psy5713 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA--YLHLLVVP 63 (81)
Q Consensus 8 ~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~--~~~l~v~~ 63 (81)
++|....+++||.+.| |-.||.|++|||...-++.......+++...+ .+++++.+
T Consensus 675 VViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~VkltiV~ 733 (829)
T KOG3605|consen 675 VVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTAVKLNIVS 733 (829)
T ss_pred HHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccceEEEEEec
Confidence 3455678899999999 99999999999999998877777777776542 55555543
No 60
>KOG3938|consensus
Probab=97.27 E-value=0.00045 Score=42.14 Aligned_cols=61 Identities=21% Similarity=0.349 Sum_probs=51.4
Q ss_pred CCCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEEe
Q psy5713 3 EPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVP 63 (81)
Q Consensus 3 ~~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~--~~~~l~v~~ 63 (81)
...+..+|..+.++|.-++.- ++.||.|-+|||..+-++.|.++.+.|+..+ ...++.+..
T Consensus 146 NG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ftlrLie 209 (334)
T KOG3938|consen 146 NGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFTLRLIE 209 (334)
T ss_pred CCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeEEEeec
Confidence 345668899999999998876 9999999999999999999999999998765 466665553
No 61
>KOG3834|consensus
Probab=96.75 E-value=0.0087 Score=38.81 Aligned_cols=62 Identities=23% Similarity=0.315 Sum_probs=49.0
Q ss_pred CCCCceEEEeeCCCCHHhhCCCCC-CCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713 3 EPMDTIFIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65 (81)
Q Consensus 3 ~~~~~~~V~~v~~~s~a~~~gl~~-gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~ 65 (81)
.+..|..|.+|..++++.++|+.+ -|-|++|||..++. +.+.+...++...+.++++++...
T Consensus 12 ggteg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~-dnd~Lk~llk~~sekVkltv~n~k 74 (462)
T KOG3834|consen 12 GGTEGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNK-DNDTLKALLKANSEKVKLTVYNSK 74 (462)
T ss_pred CCceeEEEEEeecCChHHhcCcchhhhhhheeCcccccC-chHHHHHHHHhcccceEEEEEecc
Confidence 456788999999999999999665 88999999999973 455666666666566888887543
No 62
>KOG1421|consensus
Probab=96.66 E-value=0.016 Score=39.95 Aligned_cols=51 Identities=16% Similarity=0.274 Sum_probs=46.3
Q ss_pred CCCCCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC
Q psy5713 1 MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 54 (81)
Q Consensus 1 ~~~~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~ 54 (81)
|++-.+|++|.....||||.+ +|+....|..+||..+. +.+++...+...+
T Consensus 857 ~edlp~gvyvt~rg~gspalq-~l~aa~fitavng~~t~--~lddf~~~~~~ip 907 (955)
T KOG1421|consen 857 VEDLPEGVYVTSRGYGSPALQ-MLRAAHFITAVNGHDTN--TLDDFYHMLLEIP 907 (955)
T ss_pred HhccCCceEEeecccCChhHh-hcchheeEEEecccccC--cHHHHHHHHhhCC
Confidence 356678999999999999999 89999999999999999 8999999998765
No 63
>KOG1738|consensus
Probab=96.49 E-value=0.0054 Score=41.28 Aligned_cols=58 Identities=24% Similarity=0.353 Sum_probs=49.0
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEE
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~ 62 (81)
++..+|+.+.+++||+..+ +..||.+++||+..+-+|....+...++....-+.+++.
T Consensus 224 dg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lk 282 (638)
T KOG1738|consen 224 DGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLK 282 (638)
T ss_pred CCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeee
Confidence 4556788899999999988 999999999999998889999999988877655666654
No 64
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=96.31 E-value=0.05 Score=34.40 Aligned_cols=52 Identities=40% Similarity=0.687 Sum_probs=42.2
Q ss_pred EEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC-Ce---EEEEEEe
Q psy5713 10 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP-AY---LHLLVVP 63 (81)
Q Consensus 10 V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~---~~l~v~~ 63 (81)
+..+..++++..++++.||.++++|+.++. ++.++........ .. +.+.+.|
T Consensus 133 ~~~v~~~s~a~~a~l~~Gd~iv~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 133 VGEVAPKSAAALAGLRPGDRIVAVDGEKVA--SWDDVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred eeecCCCCHHHHcCCCCCCEEEeECCEEcc--CHHHHHHHHHhccCCcccceEEEEEe
Confidence 346889999999999999999999999999 8888777665433 23 6777777
No 65
>KOG3605|consensus
Probab=96.28 E-value=0.0028 Score=43.03 Aligned_cols=53 Identities=25% Similarity=0.430 Sum_probs=44.5
Q ss_pred EEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEE
Q psy5713 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61 (81)
Q Consensus 9 ~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v 61 (81)
+|..+..|+.|.+.|++.|..|+.|||+.+--..|+-+.++|...-+.+++..
T Consensus 759 iICSLlRGGIAERGGVRVGHRIIEINgQSVVA~pHekIV~lLs~aVGEIhMKT 811 (829)
T KOG3605|consen 759 IICSLLRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVQLLSNAVGEIHMKT 811 (829)
T ss_pred EeehhhcccchhccCceeeeeEEEECCceEEeccHHHHHHHHHHhhhhhhhhc
Confidence 36678899999999999999999999999976789999999877655555543
No 66
>KOG2921|consensus
Probab=94.26 E-value=0.13 Score=33.42 Aligned_cols=47 Identities=15% Similarity=0.284 Sum_probs=38.1
Q ss_pred CCCceEEEeeCCCCHHhhC-CCCCCCEEEEECCEEcCCCCHHHHHHHHHc
Q psy5713 4 PMDTIFIKHVRPHSPAAAA-GLVPGDRVVAVNNQTIADLPYAEVVQLIQN 52 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~-gl~~gd~i~~ing~~~~~~~~~~~~~~l~~ 52 (81)
-..++.|..|...||+..- ||.+||.|.++||-+++ +.+|....++.
T Consensus 218 ~g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~--~v~dW~ecl~t 265 (484)
T KOG2921|consen 218 HGEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVH--KVSDWLECLAT 265 (484)
T ss_pred cCceEEEEeccccCCCcCcccCCccceEEecCCcccC--CHHHHHHHHHh
Confidence 3568899999998887764 69999999999999999 66666665554
No 67
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=92.30 E-value=0.4 Score=28.00 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=27.3
Q ss_pred CCCceEEEeeCCCCHHhhCCCCCCCEEEEEC
Q psy5713 4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVN 34 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~in 34 (81)
.++.+.|..|..||+|.++|+.-++.|.++.
T Consensus 120 e~~~~~Vd~v~fgS~A~~~g~d~d~~I~~v~ 150 (183)
T PF11874_consen 120 EGGKVIVDEVEFGSPAEKAGIDFDWEITEVE 150 (183)
T ss_pred eCCEEEEEecCCCCHHHHcCCCCCcEEEEEE
Confidence 4567889999999999999999999998863
No 68
>KOG4407|consensus
Probab=92.08 E-value=0.087 Score=38.95 Aligned_cols=59 Identities=53% Similarity=0.826 Sum_probs=49.7
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~ 63 (81)
.+.+++..|.+++++.-+.|+.||.++.+|..++.++...+++..+.+....+.+.+..
T Consensus 142 ~eT~~~~eV~~n~~~~~a~LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~~P 200 (1973)
T KOG4407|consen 142 METIFIKEVQANGPAHYANLQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHVVP 200 (1973)
T ss_pred hhhhhhhhhccCChhHHHhhhccceeEEeecCcccchhhhhhhhhhccCCCCCCceecc
Confidence 34678899999999999999999999999999999888888888888876555555543
No 69
>KOG3834|consensus
Probab=89.14 E-value=1.2 Score=29.43 Aligned_cols=51 Identities=31% Similarity=0.406 Sum_probs=38.6
Q ss_pred EEeeCCCCHHhhCCCC-CCCEEEEE-CCEEcCCCCHHHHHHHHHcCC-CeEEEEEEe
Q psy5713 10 IKHVRPHSPAAAAGLV-PGDRVVAV-NNQTIADLPYAEVVQLIQNSP-AYLHLLVVP 63 (81)
Q Consensus 10 V~~v~~~s~a~~~gl~-~gd~i~~i-ng~~~~~~~~~~~~~~l~~~~-~~~~l~v~~ 63 (81)
|..|.+++||..+||+ -.|-|+.+ +.+.- ..+|+...+.... +.+.+.++.
T Consensus 113 vl~V~p~SPaalAgl~~~~DYivG~~~~~~~---~~eDl~~lIeshe~kpLklyVYN 166 (462)
T KOG3834|consen 113 VLSVEPNSPAALAGLRPYTDYIVGIWDAVMH---EEEDLFTLIESHEGKPLKLYVYN 166 (462)
T ss_pred eeecCCCCHHHhcccccccceEecchhhhcc---chHHHHHHHHhccCCCcceeEee
Confidence 5688999999999977 68999888 44444 5677777776654 577777764
No 70
>KOG4371|consensus
Probab=83.11 E-value=2 Score=31.58 Aligned_cols=60 Identities=23% Similarity=0.429 Sum_probs=45.0
Q ss_pred CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy5713 4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~ 63 (81)
..+++++..+..++.|...| ++.||.+...+|.++.++........+.-.-+.+.+++.+
T Consensus 1268 ~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~~~~~~~ 1328 (1332)
T KOG4371|consen 1268 MSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPVQITVTR 1328 (1332)
T ss_pred cCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhccCchhheehh
Confidence 45678888888888888777 9999999999999999887766555554333555555544
No 71
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=78.15 E-value=1.9 Score=27.60 Aligned_cols=31 Identities=35% Similarity=0.651 Sum_probs=27.0
Q ss_pred EEEeeCCCCHHhhCCCCCCCEEEEECCEEcC
Q psy5713 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIA 39 (81)
Q Consensus 9 ~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~ 39 (81)
.+.+|.|-++|..+|+..||-|+.+|+.++.
T Consensus 66 ~~lrv~~~~~~e~~~~~~~dyilg~n~Dp~~ 96 (417)
T COG5233 66 EVLRVNPESPAEKAGMVVGDYILGINEDPLR 96 (417)
T ss_pred hheeccccChhHhhccccceeEEeecCCcHH
Confidence 4567888999999999999999999987764
No 72
>KOG4371|consensus
Probab=76.93 E-value=4.7 Score=29.86 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=39.8
Q ss_pred CCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 23 GLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 23 gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
.++.||.++.+||+.+.+.-+.++...++..++.+.+-+.|.....
T Consensus 1186 d~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 1231 (1332)
T KOG4371|consen 1186 DIRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLGVQRPPPAY 1231 (1332)
T ss_pred CcchhhhhhhccceeeechhhHHHHHHHhccCceEEEEeecCCccc
Confidence 4889999999999999888888888888888889999999876554
No 73
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=68.33 E-value=5.3 Score=26.36 Aligned_cols=33 Identities=30% Similarity=0.278 Sum_probs=29.2
Q ss_pred EEEeeCCCCHHhhCCCCCCCEEEEEC-CEEcCCC
Q psy5713 9 FIKHVRPHSPAAAAGLVPGDRVVAVN-NQTIADL 41 (81)
Q Consensus 9 ~V~~v~~~s~a~~~gl~~gd~i~~in-g~~~~~~ 41 (81)
.+..+.+++.++..|+..+|.+..|| +..+..+
T Consensus 4 ~i~~v~~~~~~d~~Gfe~~~~l~~Vn~~~~~~~c 37 (414)
T COG1625 4 KISKVGGISGADCDGFEEGDYLLKVNPGFGCKDC 37 (414)
T ss_pred ceeeccCCCcccccCccccceeeecCCCCCCCcC
Confidence 47789999999999999999999999 8877744
No 74
>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
Probab=55.30 E-value=13 Score=25.16 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=19.9
Q ss_pred eeCCCCHHhhCCCCCCCEEEEECCEEcC
Q psy5713 12 HVRPHSPAAAAGLVPGDRVVAVNNQTIA 39 (81)
Q Consensus 12 ~v~~~s~a~~~gl~~gd~i~~ing~~~~ 39 (81)
...++-+...+ .++||+|.+.||+.++
T Consensus 304 ~~~ENm~~g~A-~rPGDVits~~GkTVE 330 (485)
T COG0260 304 PAVENMPSGNA-YRPGDVITSMNGKTVE 330 (485)
T ss_pred eeeccCCCCCC-CCCCCeEEecCCcEEE
Confidence 34445454443 8899999999999886
No 75
>PF04027 DUF371: Domain of unknown function (DUF371); InterPro: IPR007171 This is an archaeal family of unknown function.; PDB: 3CBN_A.
Probab=52.82 E-value=19 Score=20.11 Aligned_cols=40 Identities=23% Similarity=0.324 Sum_probs=20.6
Q ss_pred CCCCEEEEECCE-EcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713 25 VPGDRVVAVNNQ-TIADLPYAEVVQLIQNSPAYLHLLVVPKE 65 (81)
Q Consensus 25 ~~gd~i~~ing~-~~~~~~~~~~~~~l~~~~~~~~l~v~~~~ 65 (81)
..||+|+.|+-. ....+ ..++...++..+..+.+.+.-++
T Consensus 27 prGDCIIgv~Adk~~~dl-~~e~k~~l~~~~~~i~~~i~~~~ 67 (132)
T PF04027_consen 27 PRGDCIIGVSADKAAADL-SEEFKEALRNDGAIITVTIEVGG 67 (132)
T ss_dssp TT-TTEEEBS-S--GGGS--HHHHHHHS----EEEEEEE-SS
T ss_pred CCCCEEEEEecCCChhhc-CHHHHHHHhCCCCeEEEEEEECC
Confidence 469999999843 44432 45777888776555666665443
No 76
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=48.73 E-value=16 Score=24.14 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=14.7
Q ss_pred CCCCCEEEEECCEEcCCCCHHHHHH
Q psy5713 24 LVPGDRVVAVNNQTIADLPYAEVVQ 48 (81)
Q Consensus 24 l~~gd~i~~ing~~~~~~~~~~~~~ 48 (81)
|++||+++++.|.|-. +.+++.-
T Consensus 93 LrpGD~ll~~tG~PYD--TL~~VIG 115 (403)
T PF06838_consen 93 LRPGDELLSITGKPYD--TLEEVIG 115 (403)
T ss_dssp --TT-EEEESSSS--C--CHHHHHT
T ss_pred CCCCCeEEEcCCCchh--hHHHHhC
Confidence 9999999999999988 6666553
No 77
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=48.33 E-value=20 Score=23.26 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=19.9
Q ss_pred CC-CCCCCEEEEECCEEcCCCCHHHHHH
Q psy5713 22 AG-LVPGDRVVAVNNQTIADLPYAEVVQ 48 (81)
Q Consensus 22 ~g-l~~gd~i~~ing~~~~~~~~~~~~~ 48 (81)
.| |++||.++.|-|.|-. +.+++.-
T Consensus 101 fg~LRpgDell~i~G~PYD--TLeevIG 126 (416)
T COG4100 101 FGILRPGDELLYITGSPYD--TLEEVIG 126 (416)
T ss_pred HhccCCCCeEEEecCCcch--hHHHHhc
Confidence 45 9999999999998887 6666554
No 78
>KOG0792|consensus
Probab=47.29 E-value=9.6 Score=28.28 Aligned_cols=40 Identities=30% Similarity=0.495 Sum_probs=32.0
Q ss_pred CCCHHhhCC--CCCCCEEEEECCEEcCCCCHHHHHHHHHcCC
Q psy5713 15 PHSPAAAAG--LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 54 (81)
Q Consensus 15 ~~s~a~~~g--l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~ 54 (81)
|+++++... +..+|.++.+||..+.+..++.....++...
T Consensus 757 p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~irs~r 798 (1144)
T KOG0792|consen 757 PESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSLIRSPR 798 (1144)
T ss_pred CCCCccccccCCCcccceeeecccccccccccchHHHHhhhh
Confidence 777776655 7789999999999999888887777776543
No 79
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=47.16 E-value=17 Score=18.42 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=13.2
Q ss_pred hCCCCCCCEEEEECCE
Q psy5713 21 AAGLVPGDRVVAVNNQ 36 (81)
Q Consensus 21 ~~gl~~gd~i~~ing~ 36 (81)
.+.|++||.++..+|.
T Consensus 35 ~~~L~~Gd~VvT~gGi 50 (84)
T TIGR00739 35 IESLKKGDKVLTIGGI 50 (84)
T ss_pred HHhCCCCCEEEECCCe
Confidence 3469999999998876
No 80
>PRK00913 multifunctional aminopeptidase A; Provisional
Probab=44.91 E-value=25 Score=23.86 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=20.3
Q ss_pred eeCCCCHHhhCCCCCCCEEEEECCEEcC
Q psy5713 12 HVRPHSPAAAAGLVPGDRVVAVNNQTIA 39 (81)
Q Consensus 12 ~v~~~s~a~~~gl~~gd~i~~ing~~~~ 39 (81)
.+.++.+...+ .++||+|...||+.++
T Consensus 305 ~l~ENm~~~~A-~rPgDVi~~~~GkTVE 331 (483)
T PRK00913 305 AACENMPSGNA-YRPGDVLTSMSGKTIE 331 (483)
T ss_pred EeeccCCCCCC-CCCCCEEEECCCcEEE
Confidence 34455555544 8999999999999886
No 81
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=44.35 E-value=18 Score=19.22 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=13.7
Q ss_pred hCCCCCCCEEEEECCEE
Q psy5713 21 AAGLVPGDRVVAVNNQT 37 (81)
Q Consensus 21 ~~gl~~gd~i~~ing~~ 37 (81)
..+|++||.|+.+.|.-
T Consensus 50 ~~~Lk~Gd~VvT~gGi~ 66 (106)
T PRK05585 50 LSSLAKGDEVVTNGGII 66 (106)
T ss_pred HHhcCCCCEEEECCCeE
Confidence 34699999999988763
No 82
>KOG1703|consensus
Probab=44.20 E-value=6.7 Score=26.24 Aligned_cols=57 Identities=28% Similarity=0.340 Sum_probs=42.5
Q ss_pred ceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy5713 7 TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63 (81)
Q Consensus 7 ~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~ 63 (81)
.+.+..+.+++.+..+.+..+|.+..+++..-....+.+........+....+.+.|
T Consensus 22 ~l~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 78 (479)
T KOG1703|consen 22 PLRILRVTPGGKAADAELDPGDIIAAIDGENEETMTHLEAQNKIKGSGSQLALTLSR 78 (479)
T ss_pred ccceeccCCCCccccccccccccccccccccccccccccccCccccccccccccccc
Confidence 367888999999999999999999999998766556666655554444555555554
No 83
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=43.10 E-value=20 Score=19.25 Aligned_cols=15 Identities=40% Similarity=0.627 Sum_probs=13.0
Q ss_pred CCCCCCCEEEEECCE
Q psy5713 22 AGLVPGDRVVAVNNQ 36 (81)
Q Consensus 22 ~gl~~gd~i~~ing~ 36 (81)
++|++||.|+.+.|.
T Consensus 37 ~~Lk~GD~VvT~gGi 51 (109)
T PRK05886 37 ESLQPGDRVHTTSGL 51 (109)
T ss_pred HhcCCCCEEEECCCe
Confidence 569999999998876
No 84
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=43.02 E-value=18 Score=19.54 Aligned_cols=15 Identities=27% Similarity=0.497 Sum_probs=12.8
Q ss_pred CCCCCCCEEEEECCE
Q psy5713 22 AGLVPGDRVVAVNNQ 36 (81)
Q Consensus 22 ~gl~~gd~i~~ing~ 36 (81)
++|++||.|+.+.|.
T Consensus 35 ~sLk~GD~VvT~GGi 49 (113)
T PRK06531 35 NAIQKGDEVVTIGGL 49 (113)
T ss_pred HhcCCCCEEEECCCc
Confidence 469999999988876
No 85
>KOG1320|consensus
Probab=42.24 E-value=52 Score=22.41 Aligned_cols=32 Identities=13% Similarity=0.283 Sum_probs=26.6
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEc
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTI 38 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~ 38 (81)
.|+.+.++.+-+.|.+. ++.||.|+.++|..+
T Consensus 287 ~g~~i~~~~qtd~ai~~-~nsg~~ll~~DG~~I 318 (473)
T KOG1320|consen 287 TGVLISKINQTDAAINP-GNSGGPLLNLDGEVI 318 (473)
T ss_pred cceeeeeecccchhhhc-ccCCCcEEEecCcEe
Confidence 46778888887777765 889999999999888
No 86
>cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.
Probab=41.73 E-value=28 Score=23.46 Aligned_cols=27 Identities=19% Similarity=0.323 Sum_probs=19.9
Q ss_pred eeCCCCHHhhCCCCCCCEEEEECCEEcC
Q psy5713 12 HVRPHSPAAAAGLVPGDRVVAVNNQTIA 39 (81)
Q Consensus 12 ~v~~~s~a~~~gl~~gd~i~~ing~~~~ 39 (81)
.+.++.+...+ .++||+|...||+.++
T Consensus 291 ~~~EN~is~~A-~rPgDVi~s~~GkTVE 317 (468)
T cd00433 291 PLAENMISGNA-YRPGDVITSRSGKTVE 317 (468)
T ss_pred EeeecCCCCCC-CCCCCEeEeCCCcEEE
Confidence 33445555543 8899999999999885
No 87
>PRK03760 hypothetical protein; Provisional
Probab=41.66 E-value=29 Score=18.74 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=16.1
Q ss_pred EEEeeCCCCHHhhCCCCCCCEEE
Q psy5713 9 FIKHVRPHSPAAAAGLVPGDRVV 31 (81)
Q Consensus 9 ~V~~v~~~s~a~~~gl~~gd~i~ 31 (81)
+|..+ +.+.+.+.|+++||.+.
T Consensus 92 ~VLEl-~aG~~~~~gi~~Gd~v~ 113 (117)
T PRK03760 92 YIIEG-PVGKIRVLKVEVGDEIE 113 (117)
T ss_pred EEEEe-CCChHHHcCCCCCCEEE
Confidence 45554 55677778999999984
No 88
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=40.40 E-value=25 Score=18.49 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=13.1
Q ss_pred CCCCCCCEEEEECCEE
Q psy5713 22 AGLVPGDRVVAVNNQT 37 (81)
Q Consensus 22 ~gl~~gd~i~~ing~~ 37 (81)
..|+.||+++.+.|.-
T Consensus 42 ~sL~kGD~VvT~gGi~ 57 (97)
T COG1862 42 NSLKKGDEVVTIGGIV 57 (97)
T ss_pred HhccCCCEEEEcCCeE
Confidence 3599999999988763
No 89
>PRK05015 aminopeptidase B; Provisional
Probab=40.18 E-value=36 Score=22.77 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=19.2
Q ss_pred eCCCCHHhhCCCCCCCEEEEECCEEcC
Q psy5713 13 VRPHSPAAAAGLVPGDRVVAVNNQTIA 39 (81)
Q Consensus 13 v~~~s~a~~~gl~~gd~i~~ing~~~~ 39 (81)
+.++.+...+ .++||+|...||+.++
T Consensus 243 ~aENmisg~A-~kpgDVIt~~nGkTVE 268 (424)
T PRK05015 243 CAENLISGNA-FKLGDIITYRNGKTVE 268 (424)
T ss_pred ecccCCCCCC-CCCCCEEEecCCcEEe
Confidence 3444444443 8999999999999886
No 90
>KOG4407|consensus
Probab=38.44 E-value=17 Score=28.14 Aligned_cols=35 Identities=6% Similarity=-0.001 Sum_probs=29.5
Q ss_pred eEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCC
Q psy5713 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLP 42 (81)
Q Consensus 8 ~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~ 42 (81)
.++..+..++++..+|+..++-|..|+|..+.+.+
T Consensus 98 ~~~~Q~~s~~~~~nsG~~s~~~v~~itG~e~~~~T 132 (1973)
T KOG4407|consen 98 TNWPQEASSAAGSNSGSSSSVGVAGITGLEPTSPT 132 (1973)
T ss_pred cccchhcccCcccccCcccccceeeecccccCCCc
Confidence 44566778889999999999999999999887554
No 91
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans. One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.
Probab=34.45 E-value=27 Score=19.09 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=12.0
Q ss_pred HhhCC-CCCCCEEEEECCEEc
Q psy5713 19 AAAAG-LVPGDRVVAVNNQTI 38 (81)
Q Consensus 19 a~~~g-l~~gd~i~~ing~~~ 38 (81)
...|+ |++||.++..+|...
T Consensus 71 Wv~A~~L~~GD~L~~~~G~~~ 91 (130)
T PF07591_consen 71 WVEAEDLKVGDRLLTADGSWV 91 (130)
T ss_dssp -EEGGG--TTSEEEEE-SSEE
T ss_pred hhhHhhCCCCCEEEcCCCCEE
Confidence 33444 999999999988754
No 92
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=33.75 E-value=1.1e+02 Score=18.36 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=28.8
Q ss_pred CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC
Q psy5713 24 LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA 55 (81)
Q Consensus 24 l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~ 55 (81)
...|++++-|++.-+.+-+..+....++..+.
T Consensus 109 ~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~ 140 (201)
T COG0461 109 EVKGEKVVVVEDVITTGGSILEAVEALREAGA 140 (201)
T ss_pred CCCCCEEEEEEecccCCHhHHHHHHHHHHcCC
Confidence 66899999999999999999999999998874
No 93
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=33.34 E-value=80 Score=16.70 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=10.3
Q ss_pred EEeeCCCCHHhhCCCCCCCEEE
Q psy5713 10 IKHVRPHSPAAAAGLVPGDRVV 31 (81)
Q Consensus 10 V~~v~~~s~a~~~gl~~gd~i~ 31 (81)
|..|.+|.......++.||+++
T Consensus 49 VvAVG~G~~~~~~~Vk~GD~Vl 70 (100)
T PTZ00414 49 VVAVAAATKDWTPTVKVGDTVL 70 (100)
T ss_pred EEEECCCCccccceecCCCEEE
Confidence 3344554322223356666665
No 94
>COG2090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.85 E-value=97 Score=17.49 Aligned_cols=36 Identities=8% Similarity=0.233 Sum_probs=20.6
Q ss_pred CCCCEEEEECCE-EcCCCCHHHHHHHHHcCCCeEEEEEE
Q psy5713 25 VPGDRVVAVNNQ-TIADLPYAEVVQLIQNSPAYLHLLVV 62 (81)
Q Consensus 25 ~~gd~i~~ing~-~~~~~~~~~~~~~l~~~~~~~~l~v~ 62 (81)
..||+|+.|... ... +..+-.+.+...+..+.+.+.
T Consensus 33 prGDCIIgi~Adk~~~--dlse~fk~~~r~~~~i~vvi~ 69 (141)
T COG2090 33 PRGDCIIGISADKALR--DLSEEFKAALRRGKRIRVVIR 69 (141)
T ss_pred cCCCEEEEEccCCChh--HhhHHHHHHHhCCCeEEEEEE
Confidence 469999998743 333 333333344455566666554
No 95
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=31.46 E-value=53 Score=14.95 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=12.1
Q ss_pred CCCEEEEECCEEcC
Q psy5713 26 PGDRVVAVNNQTIA 39 (81)
Q Consensus 26 ~gd~i~~ing~~~~ 39 (81)
-+|..++.+|+|+.
T Consensus 19 dWd~wvSf~GrPlt 32 (49)
T PF06543_consen 19 DWDKWVSFDGRPLT 32 (49)
T ss_pred chHHheeeCCeeCC
Confidence 37888999999997
No 96
>cd04459 Rho_CSD Rho_CSD: Rho protein cold-shock domain (CSD). Rho protein is a transcription termination factor in most bacteria. In bacteria, there are two distinct mechanisms for mRNA transcription termination. In intrinsic termination, RNA polymerase and nascent mRNA are released from DNA template by an mRNA stem loop structure, which resembles the transcription termination mechanism used by eukaryotic pol III. The second mechanism is mediated by Rho factor. Rho factor terminates transcription by using energy from ATP hydrolysis to forcibly dissociate the transcripts from RNA polymerase. Rho protein contains an N-terminal S1-like domain, which binds single-stranded RNA. Rho has a C-terminal ATPase domain which hydrolyzes ATP to provide energy to strip RNA polymerase and mRNA from the DNA template. Rho functions as a homohexamer.
Probab=31.15 E-value=42 Score=16.38 Aligned_cols=17 Identities=35% Similarity=0.337 Sum_probs=12.8
Q ss_pred CHHhhCCCCCCCEEEEE
Q psy5713 17 SPAAAAGLVPGDRVVAV 33 (81)
Q Consensus 17 s~a~~~gl~~gd~i~~i 33 (81)
+.-.+.+|+.||.|...
T Consensus 34 ~~Irr~~LR~GD~V~G~ 50 (68)
T cd04459 34 SQIRRFNLRTGDTVVGQ 50 (68)
T ss_pred HHHHHhCCCCCCEEEEE
Confidence 45566789999998763
No 97
>PTZ00412 leucyl aminopeptidase; Provisional
Probab=30.81 E-value=49 Score=23.07 Aligned_cols=16 Identities=13% Similarity=0.241 Sum_probs=14.7
Q ss_pred CCCCCEEEEECCEEcC
Q psy5713 24 LVPGDRVVAVNNQTIA 39 (81)
Q Consensus 24 l~~gd~i~~ing~~~~ 39 (81)
.++||+|...||+.++
T Consensus 361 ~rPGDVits~nGkTVE 376 (569)
T PTZ00412 361 YHPSSIITSRKGLTVE 376 (569)
T ss_pred CCCCCEeEecCCCEEe
Confidence 8899999999999875
No 98
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.38 E-value=51 Score=17.62 Aligned_cols=35 Identities=14% Similarity=0.466 Sum_probs=20.0
Q ss_pred HhhCCCCCCCEEEEECCE-Ec--CCC-CHHHHHHHHHcC
Q psy5713 19 AAAAGLVPGDRVVAVNNQ-TI--ADL-PYAEVVQLIQNS 53 (81)
Q Consensus 19 a~~~gl~~gd~i~~ing~-~~--~~~-~~~~~~~~l~~~ 53 (81)
+.+.++++||+|+--.+. ++ ... ..+.+...++..
T Consensus 29 ~krr~ik~GD~IiF~~~~l~v~V~~vr~Y~tF~~mlree 67 (111)
T COG4043 29 PKRRQIKPGDKIIFNGDKLKVEVIDVRVYDTFEEMLREE 67 (111)
T ss_pred HhhcCCCCCCEEEEcCCeeEEEEEEEeehhHHHHHHHhc
Confidence 456689999999763221 11 111 455666666554
No 99
>PRK05090 hypothetical protein; Validated
Probab=29.92 E-value=91 Score=16.29 Aligned_cols=49 Identities=14% Similarity=0.317 Sum_probs=33.6
Q ss_pred CCCceEEE-eeCCCCHHhhC-CCCCCCEEEEECCEEcCCCCHHHHHHHHHc
Q psy5713 4 PMDTIFIK-HVRPHSPAAAA-GLVPGDRVVAVNNQTIADLPYAEVVQLIQN 52 (81)
Q Consensus 4 ~~~~~~V~-~v~~~s~a~~~-gl~~gd~i~~ing~~~~~~~~~~~~~~l~~ 52 (81)
..+++.+. .|.|++..... |+..+..-+.+.-.++++....++...|..
T Consensus 7 ~~~~~~l~i~V~P~A~~~~i~~~~~~~lkv~v~ApPveGkAN~ali~~LAk 57 (95)
T PRK05090 7 DGDGLVLRLYIQPKASRDQIVGLHGDELKVAITAPPVDGQANAHLLKFLAK 57 (95)
T ss_pred eCCeEEEEEEEeeCCCcceeccccCCEEEEEEecCCCCChHHHHHHHHHHH
Confidence 34455553 78888766553 455566667788888988888887777743
No 100
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=29.86 E-value=1.2e+02 Score=17.80 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=28.7
Q ss_pred CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC
Q psy5713 24 LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA 55 (81)
Q Consensus 24 l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~ 55 (81)
+.+|+.++-|++.-.++-+...+.+.+++.+.
T Consensus 114 i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa 145 (189)
T PRK09219 114 LSEGDRVLIIDDFLANGQAALGLIDIIEQAGA 145 (189)
T ss_pred CCCCCEEEEEeehhhcChHHHHHHHHHHHCCC
Confidence 77999999999999998899999999988764
No 101
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=29.81 E-value=19 Score=18.12 Aligned_cols=15 Identities=47% Similarity=0.751 Sum_probs=0.5
Q ss_pred CCCCCCCEEEEECCE
Q psy5713 22 AGLVPGDRVVAVNNQ 36 (81)
Q Consensus 22 ~gl~~gd~i~~ing~ 36 (81)
+.|++||.++..+|.
T Consensus 35 ~~Lk~Gd~VvT~gGi 49 (82)
T PF02699_consen 35 ASLKPGDEVVTIGGI 49 (82)
T ss_dssp G--------------
T ss_pred HcCCCCCEEEECCcE
Confidence 469999999988776
No 102
>PF00883 Peptidase_M17: Cytosol aminopeptidase family, catalytic domain; InterPro: IPR000819 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The 2 zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3KZW_L 3KQX_C 3KQZ_L 3KR4_I 3KR5_J 3T8W_C 3H8F_D 3H8G_A 3H8E_B 3IJ3_A ....
Probab=29.08 E-value=24 Score=22.51 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=15.8
Q ss_pred CCCCHHhhCCCCCCCEEEEECCEEcC
Q psy5713 14 RPHSPAAAAGLVPGDRVVAVNNQTIA 39 (81)
Q Consensus 14 ~~~s~a~~~gl~~gd~i~~ing~~~~ 39 (81)
.++.+...+ .++||+|.+.||+.++
T Consensus 138 ~EN~i~~~a-~~pgDVi~s~~GkTVE 162 (311)
T PF00883_consen 138 AENMISGNA-YRPGDVITSMNGKTVE 162 (311)
T ss_dssp EEE--STTS-TTTTEEEE-TTS-EEE
T ss_pred ccccCCCCC-CCCCCEEEeCCCCEEE
Confidence 344444443 8899999999999885
No 103
>COG5569 Uncharacterized conserved protein [Function unknown]
Probab=28.34 E-value=1e+02 Score=16.41 Aligned_cols=20 Identities=35% Similarity=0.547 Sum_probs=11.9
Q ss_pred EEeeCCCCHHhhCCCCCCCEEE
Q psy5713 10 IKHVRPHSPAAAAGLVPGDRVV 31 (81)
Q Consensus 10 V~~v~~~s~a~~~gl~~gd~i~ 31 (81)
+-.|.+. |..+|++.||.|-
T Consensus 72 ~F~Vkd~--a~lsglKeGdkV~ 91 (108)
T COG5569 72 VFRVKDQ--AKLSGLKEGDKVE 91 (108)
T ss_pred EEEeccH--HHhhccccCCcEE
Confidence 3344443 5556788888775
No 104
>TIGR00251 conserved hypothetical protein TIGR00251.
Probab=27.73 E-value=97 Score=15.89 Aligned_cols=62 Identities=15% Similarity=0.192 Sum_probs=39.7
Q ss_pred CCCceEE-EeeCCCCHHhhC-CCCC--CCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713 4 PMDTIFI-KHVRPHSPAAAA-GLVP--GDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66 (81)
Q Consensus 4 ~~~~~~V-~~v~~~s~a~~~-gl~~--gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~ 66 (81)
..+++.+ ..|.|++..... |+.. +...+.+.-.|+.+.....+...|...=+. .+.+.+...
T Consensus 4 ~~~g~~l~v~V~P~A~~~~i~g~~~~~~~Lki~v~ApP~~GkAN~ali~~La~~l~v-~I~i~~G~t 69 (87)
T TIGR00251 4 NDDGLLIRIYVQPKASKDSIVGYNEWRKRVEVKIKAPPVEGKANRELIKFFGEIFGV-DVEIVSGEL 69 (87)
T ss_pred eCCeEEEEEEEeeCCCcceeccccCCCCeEEEEEecCCCCChHHHHHHHHHHHHhCc-eEEEEecCC
Confidence 4455554 478888755544 3545 556677888888888888888877654222 666665443
No 105
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=27.53 E-value=64 Score=15.61 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=12.1
Q ss_pred HhhCCCCCCCEEEEECCE
Q psy5713 19 AAAAGLVPGDRVVAVNNQ 36 (81)
Q Consensus 19 a~~~gl~~gd~i~~ing~ 36 (81)
-.++|.+.||+| .|.+.
T Consensus 49 L~~~G~~~GD~V-~Ig~~ 65 (69)
T TIGR03595 49 LRKAGAKDGDTV-RIGDF 65 (69)
T ss_pred HHHcCCCCCCEE-EEccE
Confidence 356799999988 44443
No 106
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=27.03 E-value=68 Score=17.89 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=26.1
Q ss_pred EEEeeCCCCHHhhCCCCCCCEEEEECCEEcC
Q psy5713 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIA 39 (81)
Q Consensus 9 ~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~ 39 (81)
.+..|..+.++....-+.|+.|+.++|=+..
T Consensus 49 C~agvg~gv~~l~~~arsgrrIlalDGCp~~ 79 (135)
T COG4273 49 CTAGVGAGVPALVDAARSGRRILALDGCPLR 79 (135)
T ss_pred eeecccCCcHHHHHHhhcCCceEEecCChHH
Confidence 3567788888888778899999999998887
No 107
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=25.53 E-value=1.4e+02 Score=16.89 Aligned_cols=49 Identities=12% Similarity=0.256 Sum_probs=32.6
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEc-----CCCCHHHHHHHHHcCCCeEEEEE
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTI-----ADLPYAEVVQLIQNSPAYLHLLV 61 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~-----~~~~~~~~~~~l~~~~~~~~l~v 61 (81)
....|.++.|| .-.|=-++.++|..+ .+++..++...+.+.+.++.+..
T Consensus 30 ~~~lIVGiDPG-------~ttgiAildL~G~~l~l~S~R~~~~~evi~~I~~~G~PviVAt 83 (138)
T PF04312_consen 30 RRYLIVGIDPG-------TTTGIAILDLDGELLDLKSSRNMSRSEVIEWISEYGKPVIVAT 83 (138)
T ss_pred CCCEEEEECCC-------ceeEEEEEecCCcEEEEEeecCCCHHHHHHHHHHcCCEEEEEe
Confidence 44556677776 444555556665543 34588999999998888766654
No 108
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=24.52 E-value=58 Score=15.73 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=9.0
Q ss_pred HhhCCCCCCCEEEEECCE
Q psy5713 19 AAAAGLVPGDRVVAVNNQ 36 (81)
Q Consensus 19 a~~~gl~~gd~i~~ing~ 36 (81)
-.++|++.||+| .|.+.
T Consensus 49 L~~~G~~~GD~V-~Ig~~ 65 (69)
T PF09269_consen 49 LRKAGAKEGDTV-RIGDY 65 (69)
T ss_dssp HHTTT--TT-EE-EETTE
T ss_pred HHHcCCCCCCEE-EEcCE
Confidence 346789999988 44443
No 109
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=24.33 E-value=59 Score=17.70 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=16.4
Q ss_pred eeCCCCHHhhCCCCCCCEEEEE
Q psy5713 12 HVRPHSPAAAAGLVPGDRVVAV 33 (81)
Q Consensus 12 ~v~~~s~a~~~gl~~gd~i~~i 33 (81)
.+.+.+.+.+.-|++||.++..
T Consensus 44 ~iI~~~~~~~~~L~~GD~VLA~ 65 (124)
T PF15057_consen 44 DIIALSDAMRHSLQVGDKVLAP 65 (124)
T ss_pred HeEEccCcccCcCCCCCEEEEe
Confidence 3445556666679999999997
No 110
>KOG3369|consensus
Probab=22.97 E-value=50 Score=19.50 Aligned_cols=24 Identities=25% Similarity=0.363 Sum_probs=19.3
Q ss_pred HhhCCCCCCCEEEEECCEEcCCCC
Q psy5713 19 AAAAGLVPGDRVVAVNNQTIADLP 42 (81)
Q Consensus 19 a~~~gl~~gd~i~~ing~~~~~~~ 42 (81)
+.+.|++.|..+.++||.++.+..
T Consensus 47 ~~kdgik~~~~~~~vNg~~v~g~~ 70 (199)
T KOG3369|consen 47 GSKDGIKVGHLVQAVNGENVNGYI 70 (199)
T ss_pred ecccccchhheeeeecccccccce
Confidence 345689999999999999987643
No 111
>KOG2597|consensus
Probab=22.73 E-value=1e+02 Score=21.37 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=21.1
Q ss_pred EEeeCCCCHHhhCCCCCCCEEEEECCEEcC
Q psy5713 10 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIA 39 (81)
Q Consensus 10 V~~v~~~s~a~~~gl~~gd~i~~ing~~~~ 39 (81)
|.-+.++.|.-.+ .++||.|...||+.++
T Consensus 324 v~plcENm~sg~A-~kpgDVit~~nGKtve 352 (513)
T KOG2597|consen 324 VLPLCENMPSGNA-TKPGDVITLRNGKTVE 352 (513)
T ss_pred EEeeeccCCCccC-CCCCcEEEecCCcEEE
Confidence 3444556666554 8899999999998875
No 112
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=21.88 E-value=1.8e+02 Score=17.04 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=28.8
Q ss_pred CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC
Q psy5713 24 LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA 55 (81)
Q Consensus 24 l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~ 55 (81)
+.+|+.++-|++.-.++-+...+.+.+++.+.
T Consensus 114 l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa 145 (191)
T TIGR01744 114 LSDQDRVLIIDDFLANGQAAHGLVDIAKQAGA 145 (191)
T ss_pred CCCcCEEEEEEehhccChHHHHHHHHHHHCCC
Confidence 67999999999999998899999999998764
No 113
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=21.36 E-value=1.2e+02 Score=14.68 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=19.0
Q ss_pred CCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy5713 24 LVPGDRVVAVNNQTIADLPYAEVVQLI 50 (81)
Q Consensus 24 l~~gd~i~~ing~~~~~~~~~~~~~~l 50 (81)
.++||.++--.|.-++..+-++....+
T Consensus 38 v~~Gd~VLVHaG~Ai~~ideeeA~e~l 64 (68)
T PF01455_consen 38 VKVGDYVLVHAGFAIEKIDEEEAEETL 64 (68)
T ss_dssp B-TT-EEEEETTEEEEEE-HHHHHHHH
T ss_pred CCCCCEEEEecChhheeCCHHHHHHHH
Confidence 778999999999988877777666554
No 114
>PF10077 DUF2314: Uncharacterized protein conserved in bacteria (DUF2314); InterPro: IPR018756 This domain of unkown function is found in various bacterial hypothetical proteins, as well as putative ankyrin repeat proteins.
Probab=21.18 E-value=1.1e+02 Score=16.87 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=18.1
Q ss_pred eEEEeeCCCCHHhhCCCCCCCEEE
Q psy5713 8 IFIKHVRPHSPAAAAGLVPGDRVV 31 (81)
Q Consensus 8 ~~V~~v~~~s~a~~~gl~~gd~i~ 31 (81)
-.+.++.-+.|....+++.||.+.
T Consensus 64 ~~~~G~L~N~P~~i~~v~~Gd~v~ 87 (133)
T PF10077_consen 64 DTFSGVLDNEPYYITNVKEGDRVS 87 (133)
T ss_pred CEEEEEEecCCcccCCCCCCCEEE
Confidence 345566678888888899998874
No 115
>cd02791 MopB_CT_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. This CD (MopB_CT_Nitrate-R-Nap) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs
Probab=20.89 E-value=1.4e+02 Score=15.48 Aligned_cols=18 Identities=39% Similarity=0.418 Sum_probs=13.9
Q ss_pred HHhhCCCCCCCEEEEECC
Q psy5713 18 PAAAAGLVPGDRVVAVNN 35 (81)
Q Consensus 18 ~a~~~gl~~gd~i~~ing 35 (81)
.|.+.|+..||.|.-.|+
T Consensus 43 dA~~lgi~~Gd~V~v~~~ 60 (122)
T cd02791 43 DAARLGLKEGDLVRVTSR 60 (122)
T ss_pred HHHHcCCCCCCEEEEEcC
Confidence 577789999999875553
No 116
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=20.76 E-value=2.1e+02 Score=17.36 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=32.2
Q ss_pred CCceEEEeeCCCC------HHhhCCCCCCCEEEEECCEEcCCCCHHHHH
Q psy5713 5 MDTIFIKHVRPHS------PAAAAGLVPGDRVVAVNNQTIADLPYAEVV 47 (81)
Q Consensus 5 ~~~~~V~~v~~~s------~a~~~gl~~gd~i~~ing~~~~~~~~~~~~ 47 (81)
+.|..+.-|.|++ .|.-+|+-++.--+.+.|.+++-++..++.
T Consensus 23 ~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLA 71 (248)
T COG4138 23 RAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELA 71 (248)
T ss_pred ccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHH
Confidence 3466677788877 466789888888888999999866555554
No 117
>PRK02268 hypothetical protein; Provisional
Probab=20.73 E-value=1.4e+02 Score=16.90 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=15.3
Q ss_pred eeCCCCHHhhCCCCCCCEEEEE
Q psy5713 12 HVRPHSPAAAAGLVPGDRVVAV 33 (81)
Q Consensus 12 ~v~~~s~a~~~gl~~gd~i~~i 33 (81)
.|..|..+-..-+++||.|+--
T Consensus 24 qv~hgK~apl~RmkpGD~ivyY 45 (141)
T PRK02268 24 QVCHGKAAPLRRMKPGDWIIYY 45 (141)
T ss_pred EeCCCccchhhcCCCCCEEEEE
Confidence 5555555555568999999853
No 118
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=20.64 E-value=1.4e+02 Score=15.36 Aligned_cols=8 Identities=38% Similarity=0.825 Sum_probs=4.3
Q ss_pred CCCCCEEE
Q psy5713 24 LVPGDRVV 31 (81)
Q Consensus 24 l~~gd~i~ 31 (81)
++.||.++
T Consensus 54 Vk~GD~Vl 61 (91)
T PRK14533 54 IKVGDKVI 61 (91)
T ss_pred ccCCCEEE
Confidence 55555554
No 119
>PRK04021 hypothetical protein; Reviewed
Probab=20.58 E-value=1.5e+02 Score=15.40 Aligned_cols=62 Identities=13% Similarity=0.265 Sum_probs=38.1
Q ss_pred CCCceEEE-eeCCCCHHhhC-CCCC--CCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713 4 PMDTIFIK-HVRPHSPAAAA-GLVP--GDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66 (81)
Q Consensus 4 ~~~~~~V~-~v~~~s~a~~~-gl~~--gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~ 66 (81)
..+++.+. .|.|++..... |... +..-+.+...|..+....++...+.+.=+ +.+.+.+...
T Consensus 5 ~~~~v~l~v~v~P~a~~~~i~g~~~~~~~lkv~v~apP~~GkAN~ali~~LAk~l~-~~I~I~~G~~ 70 (92)
T PRK04021 5 TKEGVILQVYVQPKAKENEIEGVDEWRGRLKVKIKAPPVKGKANKELVKFFSKLLG-AEVEIIRGET 70 (92)
T ss_pred eCCcEEEEEEEeeCCCcceEccccCCCCEEEEEEecCCCCChHHHHHHHHHHHHhC-CCEEEEecCC
Confidence 34455543 78888766653 3443 44666777888888888888887755322 2455555433
No 120
>PF02643 DUF192: Uncharacterized ACR, COG1430; InterPro: IPR003795 This entry describes proteins of unknown function.; PDB: 3M7A_B 3PJY_B.
Probab=20.46 E-value=58 Score=17.15 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=12.6
Q ss_pred eEEEeeCCCCHHhhCCCCCCCEEE
Q psy5713 8 IFIKHVRPHSPAAAAGLVPGDRVV 31 (81)
Q Consensus 8 ~~V~~v~~~s~a~~~gl~~gd~i~ 31 (81)
-+|-.+.+ +.+.+.|++.||.+.
T Consensus 83 ~~vLE~~a-G~~~~~~i~~Gd~v~ 105 (108)
T PF02643_consen 83 RYVLELPA-GWFEKLGIKVGDRVR 105 (108)
T ss_dssp CEEEEEET-THHHHHT--TT-EEE
T ss_pred CEEEEcCC-CchhhcCCCCCCEEE
Confidence 34556544 456667899999874
No 121
>cd03484 MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2). hPSM2 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to yeast PMS1. The yeast MLH1-PMS1 and the human MLH1-PMS2 heterodimers play a role in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Cells lacking hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hPMS2 causes predisposition to HPNCC and Turcot syndrome.
Probab=20.29 E-value=1.7e+02 Score=16.12 Aligned_cols=35 Identities=6% Similarity=0.052 Sum_probs=21.9
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCC
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIAD 40 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~ 40 (81)
.+..+.+......+....-.....++.|||+++.+
T Consensus 43 ~~~~i~G~is~p~~~~~r~~~~~q~~fVN~R~V~~ 77 (142)
T cd03484 43 SEVKITGYISKPSHGCGRSSSDRQFFYINGRPVDL 77 (142)
T ss_pred CcEEEEEEECCCcccCCCCCCCcEEEEECCeecCC
Confidence 44666666543322222245677899999999984
Done!