Query psy5713
Match_columns 81
No_of_seqs 116 out of 2097
Neff 10.1
Searched_HMMs 29240
Date Sat Aug 17 00:44:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5713.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5713hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2he4_A Na(+)/H(+) exchange reg 99.6 1.4E-14 4.7E-19 73.7 9.9 63 5-67 27-89 (90)
2 2v90_A PDZ domain-containing p 99.6 1.1E-14 3.8E-19 74.9 9.5 64 5-68 29-92 (96)
3 2q3g_A PDZ and LIM domain prot 99.6 8E-15 2.8E-19 74.5 8.6 63 5-67 26-88 (89)
4 2pa1_A PDZ and LIM domain prot 99.6 1.8E-14 6.1E-19 72.9 9.6 61 6-66 26-86 (87)
5 2f5y_A Regulator of G-protein 99.6 1.9E-14 6.6E-19 73.4 9.5 64 5-68 23-86 (91)
6 2uzc_A Human pdlim5, PDZ and L 99.6 2.2E-14 7.5E-19 72.7 9.4 62 5-66 26-87 (88)
7 2pkt_A PDZ and LIM domain prot 99.6 2.6E-14 9E-19 72.8 9.6 62 6-67 27-88 (91)
8 2vwr_A Ligand of NUMB protein 99.6 2.8E-14 9.5E-19 73.2 9.8 64 5-68 28-92 (95)
9 2jil_A GRIP1 protein, glutamat 99.6 1.7E-14 5.9E-19 74.2 8.8 63 5-67 31-94 (97)
10 4amh_A Disks large homolog 1; 99.6 4.5E-14 1.5E-18 73.9 10.4 64 5-68 31-95 (106)
11 1n7e_A AMPA receptor interacti 99.6 3.5E-14 1.2E-18 73.1 9.8 64 5-68 29-93 (97)
12 1rgw_A ZAsp protein; PDZ, cyph 99.6 1.4E-14 4.9E-19 72.9 8.1 61 5-65 24-84 (85)
13 1x5q_A LAP4 protein; PDZ domai 99.6 5.5E-14 1.9E-18 73.9 10.4 64 4-67 44-107 (110)
14 1kwa_A Hcask/LIN-2 protein; PD 99.6 2.4E-14 8.1E-19 72.8 8.6 63 5-67 24-87 (88)
15 2fe5_A Presynaptic protein SAP 99.6 4.3E-14 1.5E-18 72.3 9.6 61 5-65 32-93 (94)
16 1d5g_A Human phosphatase HPTP1 99.6 5.4E-14 1.9E-18 72.2 10.0 62 5-66 32-94 (96)
17 2opg_A Multiple PDZ domain pro 99.6 6.9E-14 2.4E-18 72.1 10.4 63 6-68 30-93 (98)
18 2vsp_A PDZ domain-containing p 99.6 1.3E-14 4.3E-19 74.0 7.5 63 5-67 26-88 (91)
19 1ihj_A INAD; intermolecular di 99.6 3E-14 1E-18 73.5 8.8 61 5-65 36-97 (98)
20 2w4f_A Protein LAP4; structura 99.6 6.2E-14 2.1E-18 72.1 10.0 64 4-67 32-95 (97)
21 2i1n_A Discs, large homolog 3; 99.6 4.7E-14 1.6E-18 73.2 9.5 64 5-68 33-97 (102)
22 2byg_A Channel associated prot 99.6 2.7E-14 9.2E-19 76.0 8.7 62 5-66 53-115 (117)
23 3axa_A Afadin, nectin-3, prote 99.6 5.1E-14 1.7E-18 73.6 9.6 65 4-68 36-101 (106)
24 3khf_A Microtubule-associated 99.6 4E-14 1.4E-18 73.1 9.0 61 7-67 35-95 (99)
25 2qg1_A Multiple PDZ domain pro 99.6 7.2E-14 2.5E-18 71.3 9.8 62 5-66 28-90 (92)
26 1g9o_A NHE-RF; PDZ domain, com 99.6 1.3E-13 4.4E-18 70.2 10.6 62 5-66 26-87 (91)
27 2eeg_A PDZ and LIM domain prot 99.6 4.1E-14 1.4E-18 72.5 8.5 62 5-66 31-92 (94)
28 3o46_A Maguk P55 subfamily mem 99.6 5.3E-14 1.8E-18 72.0 8.9 62 5-66 27-89 (93)
29 3r68_A Na(+)/H(+) exchange reg 99.6 4.1E-14 1.4E-18 72.5 8.5 62 6-67 29-90 (95)
30 2awx_A Synapse associated prot 99.6 7.4E-14 2.5E-18 72.9 9.6 64 5-68 32-96 (105)
31 2ego_A General receptor for ph 99.6 7.6E-14 2.6E-18 71.8 9.4 60 5-64 36-95 (96)
32 1m5z_A GRIP, AMPA receptor int 99.6 1.2E-13 4.1E-18 70.3 10.0 60 5-64 31-90 (91)
33 2fcf_A Multiple PDZ domain pro 99.6 5.8E-14 2E-18 72.9 8.9 61 6-66 39-100 (103)
34 3cyy_A Tight junction protein 99.6 9E-14 3.1E-18 70.8 9.5 63 6-68 23-86 (92)
35 2jre_A C60-1 PDZ domain peptid 99.6 4.4E-14 1.5E-18 74.0 8.5 64 4-67 42-106 (108)
36 3e17_A Tight junction protein 99.6 4.7E-14 1.6E-18 71.7 8.3 62 6-67 21-83 (88)
37 2fne_A Multiple PDZ domain pro 99.6 5.4E-14 1.8E-18 74.8 8.9 62 6-67 53-115 (117)
38 2jik_A Synaptojanin-2 binding 99.6 9.3E-14 3.2E-18 72.0 9.6 62 5-66 36-98 (101)
39 1ujd_A KIAA0559 protein; PDZ d 99.6 5.8E-14 2E-18 74.6 8.9 63 6-68 49-112 (117)
40 2iwo_A Multiple PDZ domain pro 99.6 6.2E-14 2.1E-18 74.9 9.1 63 6-68 53-116 (120)
41 3ngh_A PDZ domain-containing p 99.6 7E-14 2.4E-18 73.0 9.1 63 5-67 25-87 (106)
42 2koj_A Partitioning defective 99.6 1.1E-13 3.8E-18 72.8 9.8 63 6-68 39-104 (111)
43 1vb7_A PDZ and LIM domain 2; P 99.6 2.4E-14 8.1E-19 73.4 7.0 63 5-67 29-91 (94)
44 2ejy_A 55 kDa erythrocyte memb 99.6 3.9E-14 1.3E-18 73.3 7.8 60 5-64 35-95 (97)
45 3b76_A E3 ubiquitin-protein li 99.5 7E-14 2.4E-18 74.5 8.9 61 4-64 51-112 (118)
46 2r4h_A Membrane-associated gua 99.5 7.7E-14 2.6E-18 73.7 9.0 62 5-66 48-110 (112)
47 2i04_A Membrane-associated gua 99.5 1.2E-13 4.2E-18 69.5 9.4 59 5-63 24-85 (85)
48 3cbz_A Dishevelled-2; PDZ doma 99.5 6.6E-14 2.3E-18 73.5 8.6 63 5-67 32-98 (108)
49 2g5m_B Neurabin-2; spinophilin 99.5 4.1E-14 1.4E-18 74.7 7.8 65 4-68 33-98 (113)
50 2iwq_A Multiple PDZ domain pro 99.5 9.3E-14 3.2E-18 74.5 9.3 62 5-66 58-120 (123)
51 1uhp_A Hypothetical protein KI 99.5 1.6E-13 5.4E-18 71.8 10.0 63 4-66 39-102 (107)
52 2vz5_A TAX1-binding protein 3; 99.5 1.1E-13 3.7E-18 75.7 9.6 65 4-68 62-127 (139)
53 1ueq_A Membrane associated gua 99.5 2.5E-13 8.7E-18 72.7 10.8 64 5-68 43-109 (123)
54 2rcz_A Tight junction protein 99.5 1.1E-13 3.9E-18 68.8 8.8 59 6-64 21-80 (81)
55 1va8_A Maguk P55 subfamily mem 99.5 1.1E-13 3.6E-18 73.2 9.2 63 5-67 47-110 (113)
56 2kv8_A RGS12, regulator of G-p 99.5 2.9E-14 1E-18 71.5 6.6 61 5-65 22-82 (83)
57 2d90_A PDZ domain containing p 99.5 5.3E-14 1.8E-18 73.0 7.7 64 5-68 29-92 (102)
58 2o2t_A Multiple PDZ domain pro 99.5 5.1E-14 1.8E-18 74.7 7.8 64 5-68 48-113 (117)
59 2eeh_A PDZ domain-containing p 99.5 1.9E-13 6.4E-18 70.8 9.6 62 5-67 35-96 (100)
60 3sfj_A TAX1-binding protein 3; 99.5 1.9E-13 6.5E-18 71.1 9.7 61 4-64 43-104 (104)
61 2dkr_A LIN-7 homolog B; LIN-7B 99.5 1E-13 3.5E-18 70.8 8.4 63 4-66 28-91 (93)
62 1wf7_A Enigma homologue protei 99.5 5.7E-14 1.9E-18 73.1 7.5 64 5-68 28-91 (103)
63 1qav_A Alpha-1 syntrophin (res 99.5 1.4E-13 4.6E-18 70.0 8.7 60 5-64 29-89 (90)
64 2q9v_A Membrane-associated gua 99.5 7.4E-14 2.5E-18 70.9 7.6 61 5-65 26-89 (90)
65 1wha_A KIAA0147 protein, scrib 99.5 9.2E-14 3.1E-18 72.5 8.1 62 5-66 37-99 (105)
66 2la8_A Inactivation-NO-after-p 99.5 1.2E-13 4E-18 72.4 8.5 62 5-66 24-86 (106)
67 1v62_A KIAA1719 protein; struc 99.5 8.3E-14 2.8E-18 74.1 8.0 63 6-68 42-105 (117)
68 2eaq_A LIM domain only protein 99.5 1E-13 3.5E-18 70.4 8.0 61 5-65 27-89 (90)
69 1wf8_A Neurabin-I; PDZ domain, 99.5 8.5E-14 2.9E-18 72.9 7.8 63 5-67 39-102 (107)
70 3qe1_A Sorting nexin-27, G pro 99.5 1.9E-13 6.5E-18 71.4 9.2 60 8-67 45-104 (107)
71 1wi2_A Riken cDNA 2700099C19; 99.5 1.9E-13 6.4E-18 71.3 9.1 61 5-66 40-100 (104)
72 1uep_A Membrane associated gua 99.5 5.6E-14 1.9E-18 73.1 7.0 64 4-67 32-98 (103)
73 1q7x_A PDZ2B domain of PTP-BAS 99.5 6.1E-14 2.1E-18 73.5 7.2 64 5-68 41-105 (108)
74 1whd_A RGS3, regulator of G-pr 99.5 6.1E-14 2.1E-18 72.7 7.1 61 6-66 36-96 (100)
75 2kom_A Partitioning defective 99.5 2.6E-13 8.9E-18 72.5 9.7 61 5-65 57-120 (121)
76 1q3o_A Shank1; PDZ, GKAP, pept 99.5 3.6E-13 1.2E-17 70.7 10.0 59 6-64 45-103 (109)
77 2edz_A PDZ domain-containing p 99.5 4.5E-14 1.6E-18 74.7 6.5 64 4-67 36-99 (114)
78 1mfg_A ERB-B2 interacting prot 99.5 2.5E-13 8.4E-18 69.7 9.0 61 4-65 33-93 (95)
79 1nf3_C PAR-6B; semi-CRIB motif 99.5 1.8E-13 6.2E-18 73.7 8.9 61 6-66 65-126 (128)
80 1wfg_A Regulating synaptic mem 99.5 2.4E-13 8.1E-18 73.6 9.3 61 6-66 65-128 (131)
81 1um1_A KIAA1849 protein, RSGI 99.5 2.1E-13 7.1E-18 71.7 8.8 64 5-68 35-99 (110)
82 2vsv_A Rhophilin-2; scaffold p 99.5 2.9E-13 9.8E-18 71.3 9.3 61 5-65 43-104 (109)
83 2iwn_A Multiple PDZ domain pro 99.5 1.6E-13 5.5E-18 70.4 8.2 61 5-65 32-93 (97)
84 4e34_A Golgi-associated PDZ an 99.5 2.3E-13 8E-18 68.7 8.6 58 6-63 28-86 (87)
85 2djt_A Unnamed protein product 99.5 1.6E-13 5.3E-18 71.5 8.1 63 5-67 37-100 (104)
86 2dm8_A INAD-like protein; PDZ 99.5 1.2E-13 4.1E-18 73.1 7.7 63 6-68 43-106 (116)
87 3l4f_D SH3 and multiple ankyri 99.5 2.7E-13 9.2E-18 73.5 9.1 61 7-67 66-126 (132)
88 1uit_A Human discs large 5 pro 99.5 1.9E-13 6.7E-18 72.5 8.4 65 5-69 41-105 (117)
89 1r6j_A Syntenin 1; PDZ, membra 99.5 2.1E-13 7.1E-18 68.6 8.0 55 9-63 26-80 (82)
90 1wfv_A Membrane associated gua 99.5 6E-14 2.1E-18 72.8 6.3 63 6-68 36-99 (103)
91 2qkv_A Inactivation-NO-after-p 99.5 2.4E-13 8.2E-18 70.0 8.5 60 5-64 30-90 (96)
92 2dlu_A INAD-like protein; PDZ 99.5 1.5E-13 5.2E-18 72.3 7.8 64 5-68 37-101 (111)
93 2daz_A INAD-like protein; PDZ 99.5 2.4E-13 8.1E-18 72.9 8.7 64 5-68 50-114 (124)
94 1v5l_A PDZ and LIM domain 3; a 99.5 4.4E-14 1.5E-18 73.5 5.6 64 6-69 29-92 (103)
95 1v5q_A GRIP1 homolog, glutamat 99.5 2.5E-13 8.4E-18 72.7 8.6 65 5-69 44-111 (122)
96 2dls_A PDZ-rhogef, RHO guanine 99.5 3.2E-13 1.1E-17 69.1 8.5 61 5-66 28-88 (93)
97 3tsv_A Tight junction protein 99.5 5.3E-13 1.8E-17 71.6 9.7 64 5-68 50-115 (124)
98 3i4w_A Disks large homolog 4; 99.5 3.9E-13 1.3E-17 69.8 8.9 62 6-67 35-97 (104)
99 3egg_C Spinophilin; PP1, serin 99.5 3.8E-13 1.3E-17 75.7 9.4 60 5-64 110-170 (170)
100 3hpk_A Protein interacting wit 99.5 4.7E-13 1.6E-17 71.8 9.4 60 5-64 44-104 (125)
101 2dc2_A GOPC, golgi associated 99.5 3.6E-13 1.2E-17 70.1 8.6 63 6-68 35-98 (103)
102 1y7n_A Amyloid beta A4 precurs 99.5 3.3E-13 1.1E-17 68.9 8.2 56 9-64 34-89 (90)
103 2dmz_A INAD-like protein; PDZ 99.5 2E-13 6.8E-18 73.6 7.8 64 4-67 44-108 (129)
104 2eei_A PDZ domain-containing p 99.5 1.5E-13 5E-18 71.8 7.0 64 5-68 31-94 (106)
105 2db5_A INAD-like protein; PDZ 99.5 2.3E-13 7.8E-18 73.3 7.9 63 6-68 54-118 (128)
106 3nfk_A Tyrosine-protein phosph 99.5 2.8E-13 9.4E-18 70.8 8.0 59 6-64 43-107 (107)
107 2eno_A Synaptojanin-2-binding 99.5 4.2E-13 1.4E-17 71.5 8.8 63 5-67 46-109 (120)
108 2jxo_A Ezrin-radixin-moesin-bi 99.5 9.5E-14 3.2E-18 71.6 6.0 62 5-66 32-94 (98)
109 2ehr_A INAD-like protein; PDZ 99.5 2.5E-13 8.7E-18 72.0 7.6 62 5-66 49-111 (117)
110 2e7k_A Maguk P55 subfamily mem 99.5 4.2E-13 1.4E-17 68.5 8.0 60 5-65 28-88 (91)
111 2d92_A INAD-like protein; PDZ 99.5 4.2E-13 1.4E-17 70.4 8.1 62 4-65 42-105 (108)
112 2kpk_A Membrane-associated gua 99.5 6E-13 2.1E-17 71.8 8.7 61 6-66 43-106 (129)
113 1n7t_A 99-MER peptide of densi 99.5 3.8E-13 1.3E-17 69.9 7.6 61 4-65 41-101 (103)
114 2yuy_A RHO GTPase activating p 99.5 5.3E-14 1.8E-18 75.6 4.5 63 5-67 60-122 (126)
115 1uew_A Membrane associated gua 99.5 3.3E-13 1.1E-17 71.3 7.4 62 7-68 44-106 (114)
116 3kzd_A TIAM-1, T-lymphoma inva 99.5 5.7E-13 1.9E-17 68.5 7.9 57 5-63 34-90 (94)
117 3gge_A PDZ domain-containing p 99.5 1.8E-12 6.2E-17 66.6 9.7 63 4-66 26-91 (95)
118 3i18_A LMO2051 protein; alpha- 99.5 1E-12 3.5E-17 68.1 8.9 63 3-68 4-68 (100)
119 2h2b_A Tight junction protein 99.5 1.2E-12 4E-17 68.4 9.2 62 5-67 38-99 (107)
120 3gsl_A Disks large homolog 4; 99.5 7.6E-13 2.6E-17 75.1 9.0 64 5-68 129-193 (196)
121 1wg6_A Hypothetical protein (r 99.5 2.4E-13 8.2E-18 73.2 6.5 62 6-67 55-124 (127)
122 1wi4_A Synip, syntaxin binding 99.5 7.2E-13 2.5E-17 69.7 8.1 61 6-66 41-106 (109)
123 2edp_A Fragment, shroom family 99.5 3.5E-13 1.2E-17 69.8 6.8 61 6-67 35-96 (100)
124 2pzd_A Serine protease HTRA2; 99.5 1.3E-12 4.5E-17 68.8 9.1 61 5-68 34-94 (113)
125 2yub_A LIMK-2, LIM domain kina 99.5 4.1E-13 1.4E-17 71.6 7.1 65 4-68 42-108 (118)
126 1wh1_A KIAA1095 protein; PDZ d 99.4 1E-12 3.4E-17 70.4 8.5 62 5-68 47-110 (124)
127 1uf1_A KIAA1526 protein; PDZ d 99.4 2E-12 6.7E-17 69.6 9.5 63 5-68 45-107 (128)
128 3k1r_A Harmonin; protein-prote 99.4 8.9E-13 3E-17 75.2 8.6 61 5-66 109-169 (192)
129 3bpu_A Membrane-associated gua 99.4 1.5E-12 5.1E-17 65.8 8.6 60 5-66 26-87 (88)
130 1x6d_A Interleukin-16; PDZ dom 99.4 8.4E-13 2.9E-17 70.2 7.9 64 5-68 41-106 (119)
131 1qau_A Neuronal nitric oxide s 99.4 2.7E-12 9.1E-17 67.5 9.7 64 5-68 25-90 (112)
132 1v6b_A Harmonin isoform A1; st 99.4 9.5E-13 3.2E-17 70.1 8.0 62 6-67 43-109 (118)
133 2z17_A Pleckstrin homology SEC 99.4 6.7E-13 2.3E-17 69.1 7.0 57 5-61 47-103 (104)
134 1uju_A Scribble; PDZ domain, c 99.4 1.4E-13 4.8E-18 72.4 4.4 63 4-66 42-105 (111)
135 3qik_A Phosphatidylinositol 3, 99.4 1.8E-12 6.2E-17 67.2 8.5 59 5-63 38-99 (101)
136 2gzv_A PRKCA-binding protein; 99.4 2.8E-12 9.4E-17 67.9 9.4 59 6-64 50-109 (114)
137 2l97_A HTRA, putative serine p 99.4 1.8E-12 6.1E-17 70.4 8.8 61 5-68 56-118 (134)
138 1tp5_A Presynaptic density pro 99.4 2.1E-12 7.1E-17 68.6 8.9 62 6-67 38-100 (119)
139 2yt7_A Amyloid beta A4 precurs 99.4 1.7E-12 5.9E-17 67.3 8.2 59 7-65 38-99 (101)
140 1i16_A Interleukin 16, LCF; cy 99.4 3.3E-13 1.1E-17 72.9 5.5 63 5-67 56-120 (130)
141 2qbw_A PDZ-fibronectin fusion 99.4 3.4E-12 1.2E-16 72.6 9.6 59 4-63 22-80 (195)
142 2csj_A TJP2 protein; PDZ domai 99.4 6E-13 2.1E-17 70.6 6.0 62 5-67 45-106 (117)
143 3id1_A Regulator of sigma E pr 99.4 3.6E-12 1.2E-16 65.5 8.5 57 8-66 4-62 (95)
144 2cs5_A Tyrosine-protein phosph 99.4 4E-13 1.4E-17 71.4 5.1 61 6-66 41-107 (119)
145 1uez_A KIAA1526 protein; PDZ d 99.4 8.4E-13 2.9E-17 68.4 6.2 62 5-67 34-95 (101)
146 2kjp_A Uncharacterized protein 99.4 1.6E-13 5.6E-18 70.1 3.3 60 6-68 1-62 (91)
147 2p3w_A Probable serine proteas 99.4 2.2E-12 7.6E-17 67.9 7.8 61 5-68 34-94 (112)
148 2i6v_A General secretion pathw 99.4 2E-12 6.7E-17 65.4 7.2 60 6-67 19-80 (87)
149 2edv_A FERM and PDZ domain-con 99.4 4.7E-13 1.6E-17 68.9 4.9 60 5-65 30-89 (96)
150 3gsl_A Disks large homolog 4; 99.4 4.8E-12 1.7E-16 71.7 9.5 62 5-66 34-96 (196)
151 2d8i_A T-cell lymphoma invasio 99.4 1.2E-12 4.3E-17 69.3 6.5 60 6-67 44-103 (114)
152 2kl1_A YLBL protein; structure 99.4 7.6E-13 2.6E-17 67.9 5.5 62 4-68 3-66 (94)
153 1z87_A Alpha-1-syntrophin; pro 99.4 1.6E-12 5.3E-17 77.5 7.4 64 5-68 102-166 (263)
154 3tsz_A Tight junction protein 99.4 1.4E-12 4.9E-17 81.3 7.3 64 5-68 30-95 (391)
155 1ufx_A KIAA1526 protein; PDZ d 99.4 2.5E-12 8.6E-17 67.0 7.0 59 8-66 34-98 (103)
156 1wif_A RSGI RUH-020, riken cDN 99.4 1.5E-12 5.1E-17 70.1 6.2 60 5-64 48-110 (126)
157 1um7_A Synapse-associated prot 99.4 2.1E-12 7.1E-17 67.9 6.7 64 5-68 38-102 (113)
158 2kjd_A Sodium/hydrogen exchang 99.4 3.6E-12 1.2E-16 68.4 7.6 62 5-66 32-94 (128)
159 3r0h_A INAD, inactivation-NO-a 99.4 4.7E-12 1.6E-16 72.5 8.3 63 5-67 135-198 (206)
160 1x5n_A Harmonin; PDZ domain, u 99.4 3.5E-12 1.2E-16 67.3 7.1 63 4-67 39-102 (114)
161 1vae_A Rhophilin 2, rhophilin, 99.4 1.5E-12 5.2E-17 68.7 5.3 60 6-65 36-96 (111)
162 2qt5_A Glutamate receptor-inte 99.3 1.4E-11 4.7E-16 70.5 9.4 61 5-65 32-93 (200)
163 2zpm_A Regulator of sigma E pr 99.3 4.2E-12 1.4E-16 64.5 6.5 60 7-68 5-65 (91)
164 3r0h_A INAD, inactivation-NO-a 99.3 1.2E-11 4E-16 70.9 8.7 63 6-68 45-111 (206)
165 3shw_A Tight junction protein 99.3 2.4E-12 8.3E-17 81.8 6.0 64 5-68 22-87 (468)
166 1ujv_A Membrane associated gua 99.3 3.2E-11 1.1E-15 62.0 9.0 60 6-67 32-93 (96)
167 2qt5_A Glutamate receptor-inte 99.3 1.2E-11 4.1E-16 70.7 8.1 63 5-67 134-197 (200)
168 1p1d_A PDZ45, glutamate recept 99.3 1.8E-11 6.2E-16 69.8 8.7 62 5-66 35-99 (196)
169 1p1d_A PDZ45, glutamate recept 99.3 1.6E-11 5.3E-16 70.1 8.3 61 5-65 134-195 (196)
170 1b8q_A Protein (neuronal nitri 99.3 5.2E-12 1.8E-16 67.8 5.9 63 6-68 33-97 (127)
171 2i4s_A General secretion pathw 99.3 9.6E-12 3.3E-16 64.9 6.7 60 7-68 38-99 (105)
172 3stj_A Protease DEGQ; serine p 99.3 2.2E-11 7.4E-16 74.9 8.6 62 5-68 262-325 (345)
173 1lcy_A HTRA2 serine protease; 99.3 3E-11 1E-15 73.6 8.7 61 5-68 255-315 (325)
174 4a8c_A Periplasmic PH-dependen 99.3 6.2E-11 2.1E-15 74.8 10.2 62 6-69 363-424 (436)
175 1w9e_A Syntenin 1; cell adhesi 99.3 1.5E-10 5.2E-15 64.5 10.5 60 5-64 26-86 (166)
176 1te0_A Protease DEGS; two doma 99.3 3.7E-11 1.3E-15 73.0 8.6 62 5-68 243-306 (318)
177 2hga_A Conserved protein MTH13 99.3 6.1E-11 2.1E-15 63.7 8.2 60 3-66 22-83 (125)
178 3soe_A Membrane-associated gua 99.3 1.4E-10 4.9E-15 61.3 9.4 61 6-68 34-96 (113)
179 2lob_A Golgi-associated PDZ an 98.9 6.3E-13 2.1E-17 70.3 0.0 57 6-62 53-110 (112)
180 1y8t_A Hypothetical protein RV 99.2 1.2E-10 4.1E-15 70.8 9.2 62 5-68 241-305 (324)
181 3pv2_A DEGQ; trypsin fold, PDZ 99.2 9.8E-11 3.3E-15 74.2 7.8 61 6-68 386-446 (451)
182 2krg_A Na(+)/H(+) exchange reg 99.2 1.1E-11 3.7E-16 72.1 3.2 61 6-66 33-94 (216)
183 3rle_A Golgi reassembly-stacki 99.2 2.4E-10 8.3E-15 65.9 8.4 61 4-66 14-77 (209)
184 3pv2_A DEGQ; trypsin fold, PDZ 99.2 2.9E-10 9.8E-15 72.1 9.3 61 6-68 282-344 (451)
185 4a8c_A Periplasmic PH-dependen 99.2 3.1E-10 1.1E-14 71.6 9.1 62 5-68 262-325 (436)
186 1fc6_A Photosystem II D1 prote 99.1 8.3E-10 2.8E-14 68.7 10.0 62 5-66 98-160 (388)
187 3qo6_A Protease DO-like 1, chl 99.1 1.4E-10 4.8E-15 71.3 6.4 61 6-68 251-324 (348)
188 2xkx_A Disks large homolog 4; 99.1 4.2E-10 1.4E-14 74.6 9.0 62 5-66 330-392 (721)
189 2xkx_A Disks large homolog 4; 99.1 3.7E-10 1.3E-14 74.9 8.5 62 5-66 88-150 (721)
190 3rle_A Golgi reassembly-stacki 99.0 4.3E-10 1.5E-14 64.9 5.4 58 6-66 112-171 (209)
191 3suz_A Amyloid beta A4 precurs 99.0 5.6E-10 1.9E-14 69.6 5.6 62 7-68 233-297 (388)
192 3num_A Serine protease HTRA1; 99.0 3.5E-11 1.2E-15 73.5 0.0 61 5-68 253-313 (332)
193 4fgm_A Aminopeptidase N family 99.0 1.1E-09 3.9E-14 71.4 6.4 61 5-68 495-557 (597)
194 1ky9_A Protease DO, DEGP, HTRA 98.9 6.5E-10 2.2E-14 70.4 2.5 62 5-68 285-348 (448)
195 3k50_A Putative S41 protease; 98.9 2.3E-09 7.9E-14 67.2 4.9 57 7-66 91-147 (403)
196 1w9e_A Syntenin 1; cell adhesi 98.9 3.9E-08 1.3E-12 54.7 8.7 54 9-62 110-163 (166)
197 1ky9_A Protease DO, DEGP, HTRA 98.8 2.9E-10 9.9E-15 72.0 0.0 62 5-68 382-443 (448)
198 3suz_A Amyloid beta A4 precurs 98.8 8.4E-10 2.9E-14 68.8 0.0 56 9-64 318-373 (388)
199 4fln_A Protease DO-like 2, chl 98.6 7.3E-08 2.5E-12 62.4 6.0 63 5-68 276-348 (539)
200 4fln_A Protease DO-like 2, chl 98.5 8E-07 2.7E-11 57.6 8.2 55 4-60 413-468 (539)
201 1k32_A Tricorn protease; prote 98.5 5.3E-07 1.8E-11 61.3 7.3 59 5-66 747-816 (1045)
202 3dor_A Protein CT_858, CPAF; m 75.4 4.7 0.00016 26.9 4.2 17 23-39 109-125 (583)
203 3cbn_A Conserved protein MTH63 50.1 14 0.00046 20.3 2.4 40 25-65 36-76 (151)
204 2j3t_D Trafficking protein par 40.8 10 0.00035 22.1 1.0 45 20-64 53-101 (219)
205 2daf_A FLJ35834 protein; hypot 29.9 65 0.0022 16.9 4.0 52 18-71 46-97 (118)
206 1gyt_A Cytosol aminopeptidase; 29.7 14 0.00047 24.2 0.4 25 14-39 323-347 (503)
207 3pei_A Cytosol aminopeptidase; 29.0 17 0.00059 23.7 0.8 27 12-39 302-328 (486)
208 1yfb_A Transition state regula 25.7 39 0.0013 15.2 1.5 18 14-31 26-43 (59)
209 3ij3_A Cytosol aminopeptidase; 25.5 18 0.00063 23.6 0.4 25 14-39 303-327 (482)
210 2uyz_B Small ubiquitin-related 25.2 58 0.002 14.8 2.2 21 19-39 34-54 (79)
211 3jru_B Probable cytosol aminop 24.9 19 0.00065 23.6 0.4 25 14-39 315-339 (490)
212 1lam_A Leucine aminopeptidase; 24.8 15 0.00051 24.0 -0.1 25 14-39 303-327 (484)
213 3pjy_A Hypothetical signal pep 24.3 41 0.0014 17.9 1.6 23 8-31 103-125 (136)
214 3kzw_A Cytosol aminopeptidase; 24.2 20 0.00068 23.7 0.4 25 14-39 336-360 (515)
215 2l66_A SSO7C4, transcriptional 23.8 38 0.0013 14.6 1.2 15 17-31 19-33 (53)
216 2hc9_A Leucine aminopeptidase 23.3 22 0.00074 23.3 0.5 25 14-39 305-329 (491)
217 3kr4_A M17 leucyl aminopeptida 22.2 23 0.0008 23.4 0.5 25 14-39 347-371 (528)
218 3h8g_F Cytosol aminopeptidase; 22.2 18 0.00062 23.7 -0.1 25 14-39 320-344 (497)
219 3m7a_A Uncharacterized protein 21.8 49 0.0017 17.8 1.6 22 9-31 118-139 (140)
220 3qj7_A TS, tsase, thymidylate 20.5 60 0.0021 19.5 1.9 49 19-68 190-239 (264)
221 4efd_A Aminopeptidase; structu 20.4 25 0.00085 23.3 0.3 25 14-39 343-367 (522)
No 1
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=99.62 E-value=1.4e-14 Score=73.71 Aligned_cols=63 Identities=38% Similarity=0.488 Sum_probs=57.1
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
..+++|..|.+++||+++||++||.|++|||.++.++++.++...++..+..+.+++.|.+..
T Consensus 27 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~ 89 (90)
T 2he4_A 27 RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTR 89 (90)
T ss_dssp SSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTSSSEEEEEEECCCCC
T ss_pred CCCEEEEEECCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEccCCC
Confidence 358999999999999999999999999999999998888999999988778999999987653
No 2
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=99.62 E-value=1.1e-14 Score=74.89 Aligned_cols=64 Identities=36% Similarity=0.464 Sum_probs=57.8
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
..+++|..|.++|||+++||++||.|++|||.++.++++.++...+...+..+.+++.|++...
T Consensus 29 ~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~~ 92 (96)
T 2v90_A 29 RPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVDPEADR 92 (96)
T ss_dssp CEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEECCCTTS
T ss_pred CCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEECCCCcc
Confidence 3479999999999999999999999999999999977799999999887789999999987654
No 3
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=99.61 E-value=8e-15 Score=74.46 Aligned_cols=63 Identities=22% Similarity=0.267 Sum_probs=56.4
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
..+++|..|.+++||+++||++||.|++|||+++.++++.++...+...+..+.+++.|++..
T Consensus 26 ~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~ 88 (89)
T 2q3g_A 26 NVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGLSRAITS 88 (89)
T ss_dssp TEEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTEEEEEEEEECCC
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEeCCCC
Confidence 457899999999999999999999999999999998889999988887778899999887653
No 4
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=99.61 E-value=1.8e-14 Score=72.90 Aligned_cols=61 Identities=30% Similarity=0.396 Sum_probs=55.9
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~ 66 (81)
.+++|..|.++|||+++||++||.|++|||.++.++++.++...++..+..+.+++.|++.
T Consensus 26 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~ 86 (87)
T 2pa1_A 26 TPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRITS 86 (87)
T ss_dssp EEEEEEEECSSSHHHHTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCCSSEEEEEEECCC
T ss_pred CCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEecCC
Confidence 5789999999999999999999999999999999777999999998877889999998763
No 5
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=99.60 E-value=1.9e-14 Score=73.39 Aligned_cols=64 Identities=23% Similarity=0.329 Sum_probs=55.7
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
..+++|..|.+++||+++||+.||.|++|||.++.++++.++...+...+..+.+++.|++...
T Consensus 23 ~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~~ 86 (91)
T 2f5y_A 23 DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRMVPQV 86 (91)
T ss_dssp SSSCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEECC---
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCCC
Confidence 3568999999999999999999999999999999988899999999877678999999977654
No 6
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=99.60 E-value=2.2e-14 Score=72.66 Aligned_cols=62 Identities=16% Similarity=0.216 Sum_probs=55.5
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~ 66 (81)
..+++|..|.+++||+++||++||.|++|||.++.++++.++...+...+..+.+++.|++.
T Consensus 26 ~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~ 87 (88)
T 2uzc_A 26 NMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQRESD 87 (88)
T ss_dssp TEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECCCC
T ss_pred CCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCCC
Confidence 45789999999999999999999999999999999888889998888777799999988653
No 7
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=99.60 E-value=2.6e-14 Score=72.80 Aligned_cols=62 Identities=27% Similarity=0.386 Sum_probs=56.6
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
.+++|..|.++|||+++||++||.|++|||.++.++++.++...+...+..+.+++.|++..
T Consensus 27 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~g~~ 88 (91)
T 2pkt_A 27 QPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVARSEHE 88 (91)
T ss_dssp EEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEEECCC
T ss_pred CCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCcc
Confidence 57899999999999999999999999999999998888899999988668999999997764
No 8
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=99.60 E-value=2.8e-14 Score=73.24 Aligned_cols=64 Identities=25% Similarity=0.256 Sum_probs=57.6
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
..+++|..|.++|||+++| |++||.|++|||.++.+.++.++...+...+..+.+++.|++...
T Consensus 28 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~ 92 (95)
T 2vwr_A 28 EPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTIARPGKPE 92 (95)
T ss_dssp SCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEEEESCSC
T ss_pred CCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEcCCcCc
Confidence 4589999999999999999 999999999999999988899988888877789999999876543
No 9
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=99.59 E-value=1.7e-14 Score=74.22 Aligned_cols=63 Identities=25% Similarity=0.451 Sum_probs=57.3
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
..+++|..|.+++||+++| |++||.|++|||.++.++++.++...+...+..+.+++.|++..
T Consensus 31 ~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~~ 94 (97)
T 2jil_A 31 SRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLIEYDVSE 94 (97)
T ss_dssp CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEEEEEEECCC
T ss_pred CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Confidence 5689999999999999999 99999999999999997779999999988668999999987654
No 10
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=99.59 E-value=4.5e-14 Score=73.92 Aligned_cols=64 Identities=23% Similarity=0.406 Sum_probs=58.3
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
..+++|..|.+++||+++| |++||.|++|||.++.++++.++...++..+..+.+++.|++...
T Consensus 31 ~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~~ 95 (106)
T 4amh_A 31 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKVAKPGSGE 95 (106)
T ss_dssp BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCSEEEEEEECCSSSC
T ss_pred CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCCC
Confidence 4589999999999999999 999999999999999988999999999888789999999987543
No 11
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=99.59 E-value=3.5e-14 Score=73.14 Aligned_cols=64 Identities=23% Similarity=0.422 Sum_probs=57.4
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
..+++|..|.+++||+++| |++||.|++|||.++.++++.++...++..+..+.+++.|++...
T Consensus 29 ~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~~~ 93 (97)
T 1n7e_A 29 FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQ 93 (97)
T ss_dssp TSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECCCCCC
T ss_pred CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCCC
Confidence 3689999999999999999 999999999999999988899999999866679999999876553
No 12
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=99.59 E-value=1.4e-14 Score=72.90 Aligned_cols=61 Identities=25% Similarity=0.289 Sum_probs=54.5
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~ 65 (81)
..+++|..|.++|||+++||++||.|++|||.++.++++.++...+...+..+.+++.|++
T Consensus 24 ~~~v~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~ 84 (85)
T 1rgw_A 24 NMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSK 84 (85)
T ss_dssp TSCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEEEESCC
T ss_pred CCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHcCCCeEEEEEEeCC
Confidence 3478999999999999999999999999999999988889999888776678899988865
No 13
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.59 E-value=5.5e-14 Score=73.87 Aligned_cols=64 Identities=25% Similarity=0.381 Sum_probs=57.5
Q ss_pred CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
...+++|..|.+++||+++||++||.|++|||+++.+.++.++...+...+..+.|++.|++..
T Consensus 44 ~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~~ 107 (110)
T 1x5q_A 44 DDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRESGP 107 (110)
T ss_dssp TCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEEECSSC
T ss_pred CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHhhCCCCeEEEEEEECCcc
Confidence 4678999999999999999999999999999999998878888888877668999999998754
No 14
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=99.58 E-value=2.4e-14 Score=72.76 Aligned_cols=63 Identities=11% Similarity=0.275 Sum_probs=56.5
Q ss_pred CCceEEEeeCCCCHHhh-CCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 5 MDTIFIKHVRPHSPAAA-AGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~-~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
..+++|..|.+++||++ +||++||.|++|||.++.++++.++...++..+..+.+++.|.+..
T Consensus 24 ~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~ 87 (88)
T 1kwa_A 24 LNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE 87 (88)
T ss_dssp GGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEEEEEECCCCC
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEEEEECCcCC
Confidence 45799999999999999 7899999999999999999999999999988767888888886543
No 15
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=99.58 E-value=4.3e-14 Score=72.33 Aligned_cols=61 Identities=30% Similarity=0.432 Sum_probs=55.3
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~ 65 (81)
..+++|..|.+++||+++| |++||.|++|||.++.++++.++...+...+..+.+++.|++
T Consensus 32 ~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~g 93 (94)
T 2fe5_A 32 DNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG 93 (94)
T ss_dssp BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCCSEEEEEEECCC
T ss_pred CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEcCC
Confidence 4589999999999999999 999999999999999988889999888877778999998865
No 16
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=99.58 E-value=5.4e-14 Score=72.22 Aligned_cols=62 Identities=29% Similarity=0.496 Sum_probs=56.6
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~ 66 (81)
..+++|..|.++|||+++| |++||.|++|||.++.++++.++...+...+..+.+++.|++.
T Consensus 32 ~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~ 94 (96)
T 1d5g_A 32 HGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQS 94 (96)
T ss_dssp SSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEECCSC
T ss_pred cCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEcCCC
Confidence 4689999999999999999 9999999999999999889999999998877899999988654
No 17
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=99.58 E-value=6.9e-14 Score=72.07 Aligned_cols=63 Identities=22% Similarity=0.400 Sum_probs=57.6
Q ss_pred CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
.+++|..|.+++||+++| |++||.|++|||.++.++++.++...+...+..+.+++.|++...
T Consensus 30 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~ 93 (98)
T 2opg_A 30 GAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTLYRDEAPY 93 (98)
T ss_dssp CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEECSSCC
T ss_pred CCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEcCCCCC
Confidence 589999999999999999 999999999999999988899999988877789999999987654
No 18
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=99.58 E-value=1.3e-14 Score=74.04 Aligned_cols=63 Identities=38% Similarity=0.526 Sum_probs=53.9
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
..+++|..|.++|||+++||++||.|++|||.++.++++.++...+...+..+.+++.|++..
T Consensus 26 ~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~ 88 (91)
T 2vsp_A 26 LPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKKAQ 88 (91)
T ss_dssp CSCCBC-CCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHTTSCSEEEEEEEC----
T ss_pred CCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeCCcc
Confidence 457899999999999999999999999999999998899999999987777999999987654
No 19
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=99.58 E-value=3e-14 Score=73.45 Aligned_cols=61 Identities=30% Similarity=0.496 Sum_probs=55.2
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~ 65 (81)
..+++|..|.++|||+++| |++||.|++|||.++.++++.++...+...+..+.+++.|++
T Consensus 36 ~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~g 97 (98)
T 1ihj_A 36 TTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQTFD 97 (98)
T ss_dssp EEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEEC-
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEEEEeCC
Confidence 3489999999999999999 999999999999999988889999999887789999999875
No 20
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=99.58 E-value=6.2e-14 Score=72.07 Aligned_cols=64 Identities=25% Similarity=0.389 Sum_probs=56.4
Q ss_pred CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
...+++|..|.+++||+++||++||.|++|||.++.+++..+....+...+..+.+++.|++..
T Consensus 32 ~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~~ 95 (97)
T 2w4f_A 32 DDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRERET 95 (97)
T ss_dssp TBCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEECCSSC
T ss_pred CCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhCCCCeEEEEEEeCCcc
Confidence 4578999999999999999999999999999999998777777777766678999999998754
No 21
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=99.58 E-value=4.7e-14 Score=73.22 Aligned_cols=64 Identities=23% Similarity=0.341 Sum_probs=58.1
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
..+++|..|.+++||+++| |++||.|++|||.++.+.++.++...++..+..+.+++.|++...
T Consensus 33 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~ 97 (102)
T 2i1n_A 33 DPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVRRRQPPP 97 (102)
T ss_dssp CCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEEEEEEECCCC
T ss_pred CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCCC
Confidence 5689999999999999999 999999999999999988899999999887789999999876543
No 22
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=99.57 E-value=2.7e-14 Score=76.00 Aligned_cols=62 Identities=24% Similarity=0.410 Sum_probs=57.1
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~ 66 (81)
..+++|..|.++++|+++| |++||.|++|||.++.++++.++...++..+..+.|++.|++.
T Consensus 53 ~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~ 115 (117)
T 2byg_A 53 DNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTT 115 (117)
T ss_dssp BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEEEE
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence 4689999999999999999 9999999999999999999999999999877899999988653
No 23
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=99.57 E-value=5.1e-14 Score=73.56 Aligned_cols=65 Identities=20% Similarity=0.331 Sum_probs=59.0
Q ss_pred CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
...+++|..|.+++||+++| |++||.|++|||.++.+.++.++...++..+..+.+++.|++..+
T Consensus 36 ~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~ 101 (106)
T 3axa_A 36 DKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAIR 101 (106)
T ss_dssp SSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECCCSSC
T ss_pred CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCccc
Confidence 45689999999999999999 999999999999999988999999999887789999999987654
No 24
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=99.57 E-value=4e-14 Score=73.14 Aligned_cols=61 Identities=30% Similarity=0.387 Sum_probs=56.1
Q ss_pred ceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 7 TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 7 ~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
+++|..|.++|||+++||+.||.|++|||.++.++++.++...+...+..+.+++.|.+..
T Consensus 35 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~ 95 (99)
T 3khf_A 35 HHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRTTALENT 95 (99)
T ss_dssp EEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEECSCSS
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCEEEEEEEECCCc
Confidence 6689999999999999999999999999999999999999999998778999999987653
No 25
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=99.57 E-value=7.2e-14 Score=71.25 Aligned_cols=62 Identities=23% Similarity=0.322 Sum_probs=56.1
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~ 66 (81)
..+++|..|.++|||+++| |++||.|++|||.++.+.++.++...+...+..+.+++.|.+.
T Consensus 28 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~ 90 (92)
T 2qg1_A 28 DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGRIST 90 (92)
T ss_dssp SCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEECCCC
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEcccc
Confidence 4689999999999999999 9999999999999999888889998888777889999988753
No 26
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=99.57 E-value=1.3e-13 Score=70.19 Aligned_cols=62 Identities=37% Similarity=0.516 Sum_probs=53.9
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~ 66 (81)
..+++|..|.++|||+++||++||.|++|||.++.++++.++...++..++.+.+.+.+.+.
T Consensus 26 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~~r~~ 87 (91)
T 1g9o_A 26 KLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET 87 (91)
T ss_dssp CSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECCCC
T ss_pred CCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEcCCc
Confidence 35899999999999999999999999999999999888999999998877766666665443
No 27
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=4.1e-14 Score=72.53 Aligned_cols=62 Identities=27% Similarity=0.300 Sum_probs=55.4
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~ 66 (81)
..+++|..|.+++||+++||++||.|++|||+++.++++.++...+...+..+.+++.|++.
T Consensus 31 ~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~ 92 (94)
T 2eeg_A 31 SAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSVSSGPS 92 (94)
T ss_dssp TSCCEECCCCSSSHHHHTTCCTTCEEEEETTEETTTCCHHHHHHHHHTCCSCEEEEEECCSS
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence 45789999999999999999999999999999999888888888888766789999988764
No 28
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=99.56 E-value=5.3e-14 Score=71.95 Aligned_cols=62 Identities=19% Similarity=0.380 Sum_probs=55.6
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~ 66 (81)
..+++|..|.+++||+++| |+.||.|++|||.++.+.++.++...++..++.+.+++.+...
T Consensus 27 ~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~ 89 (93)
T 3o46_A 27 TGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFKIIPGSK 89 (93)
T ss_dssp TCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCEEEEEEEECC--
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCCC
Confidence 5689999999999999999 9999999999999998889999999998887788998887543
No 29
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=99.56 E-value=4.1e-14 Score=72.51 Aligned_cols=62 Identities=40% Similarity=0.528 Sum_probs=55.4
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
.+++|..|.++|||+++||+.||.|++|||.++.++++.++...++..++.+.+++.|.+..
T Consensus 29 ~~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~r~~~~ 90 (95)
T 3r68_A 29 KGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKELE 90 (95)
T ss_dssp CSEEEECCCTTSHHHHHTCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEEECC--
T ss_pred CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEECCccc
Confidence 48999999999999999999999999999999998888999999998778888888876654
No 30
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=99.56 E-value=7.4e-14 Score=72.87 Aligned_cols=64 Identities=22% Similarity=0.398 Sum_probs=57.2
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
..+++|..|.++|+|+++| |+.||.|++|||.++.+.++.++...++..+..+.+++.|++...
T Consensus 32 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~ 96 (105)
T 2awx_A 32 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTSMY 96 (105)
T ss_dssp BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSCCSEEEEEEECCCC--
T ss_pred CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEcCCCCC
Confidence 4589999999999999999 999999999999999988899999999887789999999987654
No 31
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=99.56 E-value=7.6e-14 Score=71.78 Aligned_cols=60 Identities=32% Similarity=0.474 Sum_probs=54.1
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 64 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~ 64 (81)
..+++|..|.+++||+++||++||.|++|||.++.++++.++...+...++.+.+++.+.
T Consensus 36 ~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~ 95 (96)
T 2ego_A 36 EMVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLYG 95 (96)
T ss_dssp CEEEEEEEECTTCHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEEECC
T ss_pred CCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEEC
Confidence 347899999999999999999999999999999998779999999988777888888764
No 32
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.56 E-value=1.2e-13 Score=70.28 Aligned_cols=60 Identities=32% Similarity=0.528 Sum_probs=53.8
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 64 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~ 64 (81)
..+++|..|.+++||+++||++||.|++|||+++.++++.++...+...+..+.+++.|+
T Consensus 31 ~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~ 90 (91)
T 1m5z_A 31 EKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN 90 (91)
T ss_dssp SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEEC
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeC
Confidence 368999999999999999999999999999999998888888888877677899998875
No 33
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=99.56 E-value=5.8e-14 Score=72.93 Aligned_cols=61 Identities=34% Similarity=0.519 Sum_probs=54.4
Q ss_pred CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~ 66 (81)
.+++|..|.++|||+++| |++||.|++|||.++.++++.++..++...++.+.+++.|...
T Consensus 39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 100 (103)
T 2fcf_A 39 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS 100 (103)
T ss_dssp --EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEECCCC
T ss_pred CCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCC
Confidence 589999999999999999 9999999999999999777999999998877789999988654
No 34
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=99.56 E-value=9e-14 Score=70.80 Aligned_cols=63 Identities=27% Similarity=0.441 Sum_probs=54.0
Q ss_pred CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
.+++|..|.++|+|+++| |+.||.|++|||.++.++++.++...+...++.+.+++.|++...
T Consensus 23 ~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~g~~~ 86 (92)
T 3cyy_A 23 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDERAT 86 (92)
T ss_dssp EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEEC-----
T ss_pred CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEeCCcee
Confidence 478899999999999999 999999999999999988999999999877678899999877654
No 35
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=99.56 E-value=4.4e-14 Score=73.98 Aligned_cols=64 Identities=23% Similarity=0.472 Sum_probs=57.2
Q ss_pred CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
...+++|..|.+++||+++| |++||.|++|||.++.++++.++...+...+..+.+++.|++..
T Consensus 42 ~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~~ 106 (108)
T 2jre_A 42 EATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIRRLPL 106 (108)
T ss_dssp CCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHHHHCSEEEEEEEECCCC
T ss_pred CCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcC
Confidence 34589999999999999999 99999999999999998889999988887667999999987654
No 36
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=99.56 E-value=4.7e-14 Score=71.65 Aligned_cols=62 Identities=24% Similarity=0.430 Sum_probs=54.8
Q ss_pred CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
.+++|..|.++++|+++| |+.||.|++|||.++.+.++.++...++..++.+.+++.+....
T Consensus 21 ~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~v~L~v~~~~~~ 83 (88)
T 3e17_A 21 SQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDLEH 83 (88)
T ss_dssp EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEECCC---
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEeCCCcc
Confidence 478999999999999999 99999999999999988899999999999888999998765443
No 37
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=99.56 E-value=5.4e-14 Score=74.85 Aligned_cols=62 Identities=26% Similarity=0.492 Sum_probs=56.8
Q ss_pred CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
.+++|..|.++|||+++| |++||.|++|||.++.++++.++...++..+..+.+++.|++..
T Consensus 53 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~g~~ 115 (117)
T 2fne_A 53 LPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDET 115 (117)
T ss_dssp EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECSCE
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Confidence 479999999999999999 99999999999999999999999999988777899999987653
No 38
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=99.56 E-value=9.3e-14 Score=71.96 Aligned_cols=62 Identities=26% Similarity=0.432 Sum_probs=56.2
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~ 66 (81)
..+++|..|.++++|+++| |+.||.|++|||+++.++++.++...+...+..+.+++.|++.
T Consensus 36 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~ 98 (101)
T 2jik_A 36 DSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLE 98 (101)
T ss_dssp BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHTCCSEEEEEEEEESC
T ss_pred CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCCC
Confidence 4689999999999999999 9999999999999999888999999888777789999988654
No 39
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.56 E-value=5.8e-14 Score=74.64 Aligned_cols=63 Identities=22% Similarity=0.285 Sum_probs=57.6
Q ss_pred CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
.+++|..|.++++|+++| |++||.|++|||.++.++++.++..+++..+..+.|++.|++...
T Consensus 49 ~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~~ 112 (117)
T 1ujd_A 49 IGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLNMS 112 (117)
T ss_dssp EEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCSSCEEEEEESSCCCC
T ss_pred cCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEEEEEECCccc
Confidence 378999999999999999 999999999999999988999999999887789999999887654
No 40
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=99.56 E-value=6.2e-14 Score=74.91 Aligned_cols=63 Identities=25% Similarity=0.397 Sum_probs=57.7
Q ss_pred CceEEEeeCCCCHHhhC-CCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 6 DTIFIKHVRPHSPAAAA-GLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~-gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
.+++|..|.+++||+++ ||++||.|++|||.++.++++.++...++..++.+.|++.|++...
T Consensus 53 ~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~v~l~v~r~g~~~ 116 (120)
T 2iwo_A 53 VPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVS 116 (120)
T ss_dssp EEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHCCSEEEEEEECCTTSS
T ss_pred CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCccc
Confidence 47899999999999999 8999999999999999988999999999988889999999877653
No 41
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=99.55 E-value=7e-14 Score=73.01 Aligned_cols=63 Identities=33% Similarity=0.483 Sum_probs=56.8
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
..+++|..|.++|||+++||++||.|++|||.++.++++.++...+...+..+.+++.|++..
T Consensus 25 ~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~ 87 (106)
T 3ngh_A 25 TDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDSY 87 (106)
T ss_dssp CCSCEEECCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHHHTTTEEEEEEECHHHH
T ss_pred CCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEECCee
Confidence 457999999999999999999999999999999998888899999987778999999986543
No 42
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=99.55 E-value=1.1e-13 Score=72.77 Aligned_cols=63 Identities=32% Similarity=0.555 Sum_probs=57.1
Q ss_pred CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL 68 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~ 68 (81)
.+++|..|.+++||+++| |++||.|++|||.++.++++.++...++.. +..+.+++.|++..+
T Consensus 39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~ 104 (111)
T 2koj_A 39 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEAF 104 (111)
T ss_dssp SCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCCCSSEEEEEEEECCCCC
T ss_pred cCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCCCc
Confidence 689999999999999999 999999999999999888899999999875 578999999987655
No 43
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.55 E-value=2.4e-14 Score=73.43 Aligned_cols=63 Identities=30% Similarity=0.377 Sum_probs=56.8
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
..+++|..|.+++||+++||++||.|++|||.++.++++.++...+...+..+.+++.|++..
T Consensus 29 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~g~~ 91 (94)
T 1vb7_A 29 HTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSSGP 91 (94)
T ss_dssp TEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEECCCCC
T ss_pred CCCeEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCcC
Confidence 347899999999999999999999999999999998888999999987768899999987654
No 44
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=99.55 E-value=3.9e-14 Score=73.28 Aligned_cols=60 Identities=13% Similarity=0.318 Sum_probs=54.2
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 64 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~ 64 (81)
..+++|..|.+++||+++| |++||.|++|||.++.++++.++...++..++.+.+++.+.
T Consensus 35 ~~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v~L~V~~~ 95 (97)
T 2ejy_A 35 KQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKVIPN 95 (97)
T ss_dssp TCCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCCEEEEEEEECC
T ss_pred CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence 4689999999999999999 99999999999999997779999999988767888888754
No 45
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=99.55 E-value=7e-14 Score=74.55 Aligned_cols=61 Identities=18% Similarity=0.313 Sum_probs=56.4
Q ss_pred CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713 4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 64 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~ 64 (81)
...+++|..|.++++|+++| |++||.|++|||.++.++++.++...++..+..+.+++.|.
T Consensus 51 ~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~v~R~ 112 (118)
T 3b76_A 51 WDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEV 112 (118)
T ss_dssp CCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSCCSEEEEEEEEE
T ss_pred CCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence 34679999999999999999 99999999999999999999999999998888999998874
No 46
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=99.55 E-value=7.7e-14 Score=73.65 Aligned_cols=62 Identities=19% Similarity=0.416 Sum_probs=56.1
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~ 66 (81)
..+++|..|.++++|+++| |++||.|++|||.++.++++.++...++..+..+.+++.|++.
T Consensus 48 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~ 110 (112)
T 2r4h_A 48 NMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRGET 110 (112)
T ss_dssp TCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEECCEE
T ss_pred CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence 4689999999999999999 9999999999999999888999998888777899999988653
No 47
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=99.55 E-value=1.2e-13 Score=69.46 Aligned_cols=59 Identities=29% Similarity=0.377 Sum_probs=52.4
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEe
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVP 63 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~ 63 (81)
..+++|..|.+++||+++| |++||.|++|||.++.++++.++...+... +..+.+++.|
T Consensus 24 ~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R 85 (85)
T 2i04_A 24 DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR 85 (85)
T ss_dssp TBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEC
Confidence 4569999999999999999 999999999999999988899999999876 4688887754
No 48
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=99.55 E-value=6.6e-14 Score=73.50 Aligned_cols=63 Identities=22% Similarity=0.422 Sum_probs=55.7
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC---CCeEEEEEEeCCCc
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS---PAYLHLLVVPKEND 67 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~---~~~~~l~v~~~~~~ 67 (81)
..+++|..|.+++||+++| |++||.|++|||+++.++++.++...++.. +..+.|++.|....
T Consensus 32 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~v~l~v~R~~~~ 98 (108)
T 3cbz_A 32 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGGG 98 (108)
T ss_dssp CCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTSSSCEEEEEECCCC-
T ss_pred CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccCCCeEEEEEEeCCCC
Confidence 5689999999999999999 999999999999999988899999999765 45799999886543
No 49
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=99.55 E-value=4.1e-14 Score=74.67 Aligned_cols=65 Identities=15% Similarity=0.252 Sum_probs=58.8
Q ss_pred CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
...+++|..|.++|||+++| |++||.|++|||.++.++++.++...+...+..+.+++.|++...
T Consensus 33 ~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~ 98 (113)
T 2g5m_B 33 EKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERPGE 98 (113)
T ss_dssp CCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHHSCSSCEEEEEECCCCT
T ss_pred CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEEEEeCCCCC
Confidence 35689999999999999999 999999999999999988899999989887789999999987654
No 50
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=99.55 E-value=9.3e-14 Score=74.52 Aligned_cols=62 Identities=35% Similarity=0.534 Sum_probs=56.1
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~ 66 (81)
..+++|..|.++|||+++| |++||.|++|||.++.++++.++...++..++.+.+++.|...
T Consensus 58 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 120 (123)
T 2iwq_A 58 MRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS 120 (123)
T ss_dssp CCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEECCCC
T ss_pred CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCc
Confidence 3589999999999999999 9999999999999999777999999998877789999887543
No 51
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.55 E-value=1.6e-13 Score=71.82 Aligned_cols=63 Identities=21% Similarity=0.386 Sum_probs=57.0
Q ss_pred CCCceEEEeeCCCCHHhhC-CCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713 4 PMDTIFIKHVRPHSPAAAA-GLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~-gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~ 66 (81)
...+++|..|.+++||+++ ||++||.|++|||.++.+.++.++...++..+..+.+++.|...
T Consensus 39 ~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~ 102 (107)
T 1uhp_A 39 SSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTS 102 (107)
T ss_dssp CSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECCS
T ss_pred CCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEeCCC
Confidence 3568999999999999999 89999999999999999889999999998877899999988654
No 52
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=99.54 E-value=1.1e-13 Score=75.65 Aligned_cols=65 Identities=22% Similarity=0.331 Sum_probs=56.4
Q ss_pred CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEEEeCCCcc
Q psy5713 4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP-AYLHLLVVPKENDL 68 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~~~l~v~~~~~~~ 68 (81)
...|++|..|.+++||+++||++||.|++|||.++.++++.++..++.... ..+.+++.|++...
T Consensus 62 ~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~ 127 (139)
T 2vz5_A 62 TDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQK 127 (139)
T ss_dssp TCCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHCCTTCSEEEEEEEECC---
T ss_pred CCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCEEEEEEEECCEEE
Confidence 357899999999999999999999999999999999888999999998743 68999999987654
No 53
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.54 E-value=2.5e-13 Score=72.68 Aligned_cols=64 Identities=27% Similarity=0.346 Sum_probs=57.6
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~ 68 (81)
..+++|..|.++++|+++| |+.||.|++|||+++.++++.++..+++.. +..+.|++.|+....
T Consensus 43 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~ 109 (123)
T 1ueq_A 43 DEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPLP 109 (123)
T ss_dssp SCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEESCCCC
T ss_pred CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCCCC
Confidence 5679999999999999999 999999999999999988999999999884 479999999976544
No 54
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=99.54 E-value=1.1e-13 Score=68.79 Aligned_cols=59 Identities=27% Similarity=0.457 Sum_probs=53.2
Q ss_pred CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 64 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~ 64 (81)
.+++|..|.++++|+++| |++||.|++|||.++.++++.++...+....+.+.+++.|+
T Consensus 21 ~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~ 80 (81)
T 2rcz_A 21 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRD 80 (81)
T ss_dssp EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEC-
T ss_pred CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCeEEEEEEeC
Confidence 478999999999999999 99999999999999998899999999987667888888775
No 55
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.54 E-value=1.1e-13 Score=73.20 Aligned_cols=63 Identities=25% Similarity=0.451 Sum_probs=57.3
Q ss_pred CCceEEEeeCCCCHHhhCCC-CCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGL-VPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl-~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
..+++|..|.+++||+++|+ +.||.|++|||+++.++++.++..+++..++.+.+++.|.+..
T Consensus 47 ~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~ 110 (113)
T 1va8_A 47 MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSSGP 110 (113)
T ss_dssp SSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEEEEEEECCCCC
T ss_pred CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCcc
Confidence 46899999999999999998 9999999999999998899999999988777899999987654
No 56
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=99.54 E-value=2.9e-14 Score=71.53 Aligned_cols=61 Identities=28% Similarity=0.424 Sum_probs=54.4
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~ 65 (81)
..+++|..|.+++||+++||++||.|++|||.++.++++.++...+...+..+.+++.|+.
T Consensus 22 ~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~ 82 (83)
T 2kv8_A 22 QAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIAEGV 82 (83)
T ss_dssp SSSCBCCBCCTTSTTTTTTCCTTCEEEEETTEECSSCCHHHHHHHHTTCSSCEEEEEECCC
T ss_pred CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEcCC
Confidence 3478899999999999999999999999999999988889999998776678899988864
No 57
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.54 E-value=5.3e-14 Score=73.05 Aligned_cols=64 Identities=39% Similarity=0.510 Sum_probs=57.0
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
..+++|..|.+++||+++||+.||.|++|||.++.++++.++...+...+..+.+++.|++...
T Consensus 29 ~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~~ 92 (102)
T 2d90_A 29 QKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKEAES 92 (102)
T ss_dssp SSSEEEECCCTTSTTTTTTCCTTCEEEEESSCBCTTSCHHHHHHHHHHSTTEEEEEECSTTCCC
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCCce
Confidence 4689999999999999999999999999999999987789999998877789999998866543
No 58
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=99.54 E-value=5.1e-14 Score=74.70 Aligned_cols=64 Identities=19% Similarity=0.337 Sum_probs=58.4
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcC-CCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIA-DLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~-~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
..+++|..|.+++||+++| |++||.|++|||.++. ++++.++...+...+..+.+++.|++...
T Consensus 48 ~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~~~v~l~v~R~~~~~ 113 (117)
T 2o2t_A 48 ELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIARGSLPQ 113 (117)
T ss_dssp CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHHCCSEEEEEEESSCCGG
T ss_pred CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCCCEEEEEEEeCCcce
Confidence 4589999999999999999 9999999999999998 88999999999887789999999987654
No 59
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.9e-13 Score=70.77 Aligned_cols=62 Identities=26% Similarity=0.410 Sum_probs=55.6
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
..+++|..|.+++||+++||++||.|++|||.++.++++.++...++. +..+.+++.|++..
T Consensus 35 ~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~~v~l~v~R~g~~ 96 (100)
T 2eeh_A 35 GLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTS-SSRLHMMVRRMGSG 96 (100)
T ss_dssp TCCEEEEEECTTSHHHHHTCCSSCEEEEETTEECSSCCHHHHHHHHHS-CSSEEEEEEECSCC
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcC-CCEEEEEEEECCcC
Confidence 468999999999999999999999999999999998778888888877 58899999997654
No 60
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=99.54 E-value=1.9e-13 Score=71.07 Aligned_cols=61 Identities=23% Similarity=0.374 Sum_probs=54.3
Q ss_pred CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEEEeC
Q psy5713 4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP-AYLHLLVVPK 64 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~~~l~v~~~ 64 (81)
...|++|..|.++|||+++||++||.|++|||.++.+.++.++...+.... ..+.+++.|+
T Consensus 43 ~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~ 104 (104)
T 3sfj_A 43 TDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ 104 (104)
T ss_dssp TCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHTCTTCSEEEEEEEEC
T ss_pred CCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEcC
Confidence 467899999999999999999999999999999999888999999997643 6888888774
No 61
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1e-13 Score=70.77 Aligned_cols=63 Identities=24% Similarity=0.386 Sum_probs=56.0
Q ss_pred CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713 4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~ 66 (81)
...+++|..|.+++||+++| |++||.|++|||+++.++++.++...+...+..+.+++.|+..
T Consensus 28 ~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~ 91 (93)
T 2dkr_A 28 QNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRSGPS 91 (93)
T ss_dssp SSCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCCSEEEEEECCCCS
T ss_pred CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEeCCC
Confidence 35689999999999999996 9999999999999999888999999998777788898887653
No 62
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.53 E-value=5.7e-14 Score=73.09 Aligned_cols=64 Identities=14% Similarity=0.166 Sum_probs=56.6
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
..+++|..|.+++||+++||++||.|++|||+++.++++.++...+...+..+.+++.|++...
T Consensus 28 ~~~v~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~~~ 91 (103)
T 1wf7_A 28 NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAA 91 (103)
T ss_dssp TEEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEEEECCCSCCC
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCcC
Confidence 3468899999999999999999999999999999988888888888777788999998877654
No 63
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=99.53 E-value=1.4e-13 Score=70.01 Aligned_cols=60 Identities=22% Similarity=0.242 Sum_probs=54.3
Q ss_pred CCceEEEeeCCCCHHhhC-CCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713 5 MDTIFIKHVRPHSPAAAA-GLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 64 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~-gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~ 64 (81)
..+++|..|.++|||+++ ||++||.|++|||.++.++++.++...+...+..+.+++.|.
T Consensus 29 ~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~v~l~v~r~ 89 (90)
T 1qav_A 29 KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM 89 (90)
T ss_dssp TEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEC
T ss_pred CCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEEe
Confidence 357899999999999999 899999999999999998899999999988778888888763
No 64
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=99.53 E-value=7.4e-14 Score=70.94 Aligned_cols=61 Identities=28% Similarity=0.449 Sum_probs=53.9
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEEeCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPKE 65 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~--~~~~l~v~~~~ 65 (81)
..+++|..|.++|||+++| |++||.|++|||.++.+.++.++...+...+ ..+.+++.|..
T Consensus 26 ~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~v~l~v~R~~ 89 (90)
T 2q9v_A 26 GEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQTR 89 (90)
T ss_dssp TSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEECC
T ss_pred CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEecc
Confidence 3579999999999999999 9999999999999998779999999887764 38999988753
No 65
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.53 E-value=9.2e-14 Score=72.51 Aligned_cols=62 Identities=24% Similarity=0.396 Sum_probs=56.8
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~ 66 (81)
..+++|..|.+++||+++| |++||.|++|||+++.++++.++...++..+..+.|++.|++.
T Consensus 37 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~ 99 (105)
T 1wha_A 37 DAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAG 99 (105)
T ss_dssp CCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSCCSCEEEEEEECCC
T ss_pred CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence 4689999999999999999 9999999999999999888999999998777789999998754
No 66
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=99.53 E-value=1.2e-13 Score=72.41 Aligned_cols=62 Identities=15% Similarity=0.178 Sum_probs=55.4
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~ 66 (81)
..|++|..|.+++||+++| |++||.|++|||+++.+.++.++...+...++.+.+++.|...
T Consensus 24 ~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~ 86 (106)
T 2la8_A 24 EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPKP 86 (106)
T ss_dssp SSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCBSCEEEEEEECCS
T ss_pred CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCC
Confidence 4589999999999999999 9999999999999999888888888888777789999988643
No 67
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.53 E-value=8.3e-14 Score=74.06 Aligned_cols=63 Identities=21% Similarity=0.452 Sum_probs=57.4
Q ss_pred CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
.+++|..|.++++|+++| |++||.|++|||+++.+.++.++..+++..+..+.|++.|.+...
T Consensus 42 ~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~~ 105 (117)
T 1v62_A 42 SVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQSQ 105 (117)
T ss_dssp CEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSEEEEEECCBTTBC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEECCCCC
Confidence 349999999999999999 999999999999999877999999999977789999999877654
No 68
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=99.53 E-value=1e-13 Score=70.42 Aligned_cols=61 Identities=23% Similarity=0.249 Sum_probs=53.1
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKE 65 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~--~~~~~~l~v~~~~ 65 (81)
..+++|..|.++|||+++||++||.|++|||.++.+.++.++..++.. .+..+.+++.|++
T Consensus 27 ~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g 89 (90)
T 2eaq_A 27 IPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRYG 89 (90)
T ss_dssp TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CCCEEEEEECCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEEEEEEEeCC
Confidence 457899999999999999999999999999999954589999988874 3478999998865
No 69
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.52 E-value=8.5e-14 Score=72.86 Aligned_cols=63 Identities=16% Similarity=0.291 Sum_probs=57.2
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
..+++|..|.+++||+++| |++||.|++|||.++.++++.++...+...+..+.+++.|++..
T Consensus 39 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~ 102 (107)
T 1wf8_A 39 KLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREKPS 102 (107)
T ss_dssp EEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCCSEEEEEEEEECCC
T ss_pred CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEEEEeCCCC
Confidence 4589999999999999999 99999999999999998889999999988778999999886543
No 70
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=99.52 E-value=1.9e-13 Score=71.43 Aligned_cols=60 Identities=30% Similarity=0.424 Sum_probs=54.9
Q ss_pred eEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 8 ~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
++|..|.+++||+++||+.||.|++|||.++.++++.++...++..+..+.+++.|.+..
T Consensus 45 ~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~ 104 (107)
T 3qe1_A 45 QHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVESE 104 (107)
T ss_dssp EEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHHCSSEEEEEEECSSCC
T ss_pred eEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEcCCCC
Confidence 469999999999999999999999999999999999999999988778999999987543
No 71
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.52 E-value=1.9e-13 Score=71.26 Aligned_cols=61 Identities=31% Similarity=0.418 Sum_probs=55.1
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~ 66 (81)
..+++|..|.+++||+++||++||.|++|||.++.++++.++...++. +..+.+++.|+..
T Consensus 40 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~v~l~v~r~~~ 100 (104)
T 1wi2_A 40 QLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKT-AREISMRVRFFSG 100 (104)
T ss_dssp CCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHH-SSSEEEEEECCCC
T ss_pred CCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC-CCEEEEEEEECCC
Confidence 358999999999999999999999999999999997779999999988 5789999988654
No 72
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.52 E-value=5.6e-14 Score=73.14 Aligned_cols=64 Identities=28% Similarity=0.359 Sum_probs=56.8
Q ss_pred CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCc
Q psy5713 4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKEND 67 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~ 67 (81)
...+++|..|.+++||+++| |++||.|++|||+++.++++.++..+++.. +..+.|++.|+...
T Consensus 32 ~~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~ 98 (103)
T 1uep_A 32 PGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVLS 98 (103)
T ss_dssp TTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred CCCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCcEEEEEEeCCCC
Confidence 35679999999999999999 999999999999999887899999999876 57999999987543
No 73
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.52 E-value=6.1e-14 Score=73.50 Aligned_cols=64 Identities=28% Similarity=0.470 Sum_probs=58.1
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
..+++|..|.+++||+++| |+.||.|++|||.++.++++.++...+...+..+.+++.|++...
T Consensus 41 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~ 105 (108)
T 1q7x_A 41 HGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSPT 105 (108)
T ss_dssp SCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHHHHHTTSEEEEEEECCCCSC
T ss_pred CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCccC
Confidence 4689999999999999999 999999999999999988888999999887789999999876543
No 74
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.52 E-value=6.1e-14 Score=72.69 Aligned_cols=61 Identities=25% Similarity=0.364 Sum_probs=55.3
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~ 66 (81)
.+++|..|.+++||+++||++||.|++|||+++.++++.++...++..+..+.+++.|+..
T Consensus 36 ~~~~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~ 96 (100)
T 1whd_A 36 SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRVSG 96 (100)
T ss_dssp SSCBCCBCCTTSHHHHHTCCSSCEEEEETTEECTTCCHHHHHHHHHHCSSEEEEEEEECCS
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence 5788999999999999999999999999999999888999999998777789999988754
No 75
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=99.52 E-value=2.6e-13 Score=72.52 Aligned_cols=61 Identities=31% Similarity=0.538 Sum_probs=54.9
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKE 65 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~ 65 (81)
..+++|..|.+++||+++| |++||+|++|||.++.++++.++...++.. +..+.+++.|++
T Consensus 57 ~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g 120 (121)
T 2kom_A 57 SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQE 120 (121)
T ss_dssp SCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCSSCEEEEEEEECC
T ss_pred CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEeCC
Confidence 3689999999999999999 999999999999999987889999999874 478999998865
No 76
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=99.52 E-value=3.6e-13 Score=70.65 Aligned_cols=59 Identities=27% Similarity=0.322 Sum_probs=53.7
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 64 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~ 64 (81)
.|++|..|.++++|+++||+.||.|++|||+++.++++.++...++..+..+.+++.+.
T Consensus 45 ~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~~~ 103 (109)
T 1q3o_A 45 ALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMV 103 (109)
T ss_dssp SSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEEEEE
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEEC
Confidence 37999999999999999999999999999999998888999999987777888888764
No 77
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=99.52 E-value=4.5e-14 Score=74.68 Aligned_cols=64 Identities=33% Similarity=0.472 Sum_probs=57.6
Q ss_pred CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
...+++|..|.++|||+++||++||.|++|||.++.++++.++...++..+..+.+++.|++..
T Consensus 36 ~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~~ 99 (114)
T 2edz_A 36 DTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDSY 99 (114)
T ss_dssp TCCSCEEECCCTTCTTGGGTCCTTCEEEEESSSBCSSSCHHHHHHHHHHTCSEEEEEEECHHHH
T ss_pred CCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCcc
Confidence 3568999999999999999999999999999999998788999999987778999999987654
No 78
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=99.52 E-value=2.5e-13 Score=69.66 Aligned_cols=61 Identities=26% Similarity=0.517 Sum_probs=55.0
Q ss_pred CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713 4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~ 65 (81)
...+++|..|.+++||++ ||++||.|++|||.++.++++.++...+...+..+.+++.|+.
T Consensus 33 ~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~ 93 (95)
T 1mfg_A 33 DDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV 93 (95)
T ss_dssp TCCCEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCBHHHHHHHHHHCCSEEEEEEEEEC
T ss_pred CCCCEEEEEECCCCchhh-CCCCCCEEEEECCEEcCCCCHHHHHHHhhcCCCeEEEEEEeCC
Confidence 456899999999999999 9999999999999999988898988888877789999998864
No 79
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=99.52 E-value=1.8e-13 Score=73.74 Aligned_cols=61 Identities=25% Similarity=0.391 Sum_probs=56.0
Q ss_pred CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~ 66 (81)
.+++|..|.++++|+++| |+.||.|++|||.++.+.++.++..+++..+..+.+++.|.+.
T Consensus 65 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 126 (128)
T 1nf3_C 65 PGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQ 126 (128)
T ss_dssp EEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHHHHHHHHTTTSEEEEEECCCC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCc
Confidence 479999999999999999 9999999999999998889999999998777789999988764
No 80
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=99.51 E-value=2.4e-13 Score=73.61 Aligned_cols=61 Identities=30% Similarity=0.414 Sum_probs=55.6
Q ss_pred CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEEeCCC
Q psy5713 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPKEN 66 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~--~~~~l~v~~~~~ 66 (81)
.+++|..|.++++|+++| |++||.|++|||+++.+.++.++..+++... ..+.|++.|++.
T Consensus 65 ~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 128 (131)
T 1wfg_A 65 LCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGP 128 (131)
T ss_dssp EEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEECS
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcCCC
Confidence 489999999999999999 9999999999999999889999999998764 789999988654
No 81
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.51 E-value=2.1e-13 Score=71.65 Aligned_cols=64 Identities=33% Similarity=0.560 Sum_probs=58.2
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
..+++|..|.+++||+++| |++||.|++|||+++.+.++.++...+...+..+.|++.|++...
T Consensus 35 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~ 99 (110)
T 1um1_A 35 APGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVET 99 (110)
T ss_dssp CSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCCSEEEEEEECCCHHH
T ss_pred CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcce
Confidence 4689999999999999999 999999999999999988899999999887789999999887544
No 82
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=99.51 E-value=2.9e-13 Score=71.31 Aligned_cols=61 Identities=21% Similarity=0.282 Sum_probs=53.9
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC-eEEEEEEeCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA-YLHLLVVPKE 65 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~-~~~l~v~~~~ 65 (81)
..+++|..|.+++||+++||+.||.|++|||.++.++++.++...++..++ .+.+++.|..
T Consensus 43 ~~~v~V~~V~~gspA~~AGL~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v~l~V~~~~ 104 (109)
T 2vsv_A 43 NAPVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLL 104 (109)
T ss_dssp SSSCEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEEEESCC
T ss_pred CCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEECC
Confidence 356789999999999999999999999999999998889999999987665 4899888754
No 83
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=99.51 E-value=1.6e-13 Score=70.38 Aligned_cols=61 Identities=18% Similarity=0.401 Sum_probs=55.3
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~ 65 (81)
..+++|..|.+++||+++| |++||.|++|||.++.++++.++...+...+..+.+++.|++
T Consensus 32 ~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~g 93 (97)
T 2iwn_A 32 PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 93 (97)
T ss_dssp CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSEEEEEEEEEE
T ss_pred CCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence 5689999999999999999 999999999999999988888988888876679999998764
No 84
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=99.51 E-value=2.3e-13 Score=68.68 Aligned_cols=58 Identities=29% Similarity=0.449 Sum_probs=52.2
Q ss_pred CceEEEeeCCCCHHhh-CCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy5713 6 DTIFIKHVRPHSPAAA-AGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~-~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~ 63 (81)
.+++|..|.++|||++ +||++||.|++|||.++.++++.++...++..+..+.+++..
T Consensus 28 ~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~~ 86 (87)
T 4e34_A 28 VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVY 86 (87)
T ss_dssp EEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEEE
T ss_pred CCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence 4689999999999999 799999999999999999889999999998877788887753
No 85
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1.6e-13 Score=71.45 Aligned_cols=63 Identities=24% Similarity=0.355 Sum_probs=56.4
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
..+++|..|.+++||+++| |++||.|++|||+++.++++.++...++..+..+.|++.|++..
T Consensus 37 ~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~~ 100 (104)
T 2djt_A 37 DTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLSG 100 (104)
T ss_dssp ECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHHTCSEEEEEECCCCCC
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCCC
Confidence 4689999999999999999 99999999999999998888999988887668999999887653
No 86
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.51 E-value=1.2e-13 Score=73.15 Aligned_cols=63 Identities=25% Similarity=0.434 Sum_probs=57.5
Q ss_pred CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
.+++|..|.++++|+++| |+.||.|++|||+++.++++.++...++..+..+.|++.|++...
T Consensus 43 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~~ 106 (116)
T 2dm8_A 43 NAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAHY 106 (116)
T ss_dssp SSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTCCSEEEEEEECCSSCC
T ss_pred CCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCCccc
Confidence 589999999999999999 999999999999999988899999999877789999999877655
No 87
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=99.51 E-value=2.7e-13 Score=73.50 Aligned_cols=61 Identities=26% Similarity=0.317 Sum_probs=55.7
Q ss_pred ceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 7 TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 7 ~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
|++|..|.++++|+++||+.||.|++|||.++.++++.++...++..+..+.+++.+....
T Consensus 66 gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~~~~~~ 126 (132)
T 3l4f_D 66 LQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRH 126 (132)
T ss_dssp SEEEEEECTTSGGGGGTCCTTCEEEEESSSBCTTSCHHHHHHHHHHTTTEEEEEEECCCC-
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCCC
Confidence 7999999999999999999999999999999998899999999988878999999876543
No 88
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.51 E-value=1.9e-13 Score=72.48 Aligned_cols=65 Identities=18% Similarity=0.192 Sum_probs=55.7
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcce
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLL 69 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~~ 69 (81)
..+++|..|.+++||+++||++||+|++|||+++.+++..+....+...+..+.+++.|++..+.
T Consensus 41 ~~gv~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~r~~~~~~ 105 (117)
T 1uit_A 41 KGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYNPHVHQ 105 (117)
T ss_dssp TSCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEEEEECCCSCCCC
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCchhh
Confidence 46899999999999999999999999999999999777776665555556799999999877664
No 89
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=99.51 E-value=2.1e-13 Score=68.57 Aligned_cols=55 Identities=20% Similarity=0.399 Sum_probs=51.0
Q ss_pred EEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy5713 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63 (81)
Q Consensus 9 ~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~ 63 (81)
.|..+.+++||+++||+.||.|++|||+++.+++++++...++..+..++|++.+
T Consensus 26 ~I~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~evv~llr~~g~~V~L~v~p 80 (82)
T 1r6j_A 26 KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP 80 (82)
T ss_dssp EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEE
T ss_pred EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEEEEEe
Confidence 3788999999999999999999999999999999999999999877899998875
No 90
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.51 E-value=6e-14 Score=72.84 Aligned_cols=63 Identities=19% Similarity=0.398 Sum_probs=56.5
Q ss_pred CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
.+++|..|.+++||+++| |+.||.|++|||+++.++++.++...++..+..+.+++.|++...
T Consensus 36 ~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~ 99 (103)
T 1wfv_A 36 MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTGSG 99 (103)
T ss_dssp EEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEECEEEECTTCSS
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCCCC
Confidence 489999999999999999 999999999999999988899998888866689999999887654
No 91
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=99.51 E-value=2.4e-13 Score=69.96 Aligned_cols=60 Identities=15% Similarity=0.177 Sum_probs=54.5
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 64 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~ 64 (81)
..+++|..|.+++||+++| |++||.|++|||.++.+.++.++...+...++.+.+++.|.
T Consensus 30 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~R~ 90 (96)
T 2qkv_A 30 EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGKVSMEVTRP 90 (96)
T ss_dssp SSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECC
T ss_pred CCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEEEEEeC
Confidence 3579999999999999999 99999999999999998888888888888778899999875
No 92
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.50 E-value=1.5e-13 Score=72.28 Aligned_cols=64 Identities=17% Similarity=0.365 Sum_probs=57.4
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
..+++|..|.++++|+++| |+.||.|++|||+++.++++.++...++..+..+.+++.|++...
T Consensus 37 ~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~~~ 101 (111)
T 2dlu_A 37 TSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPAGD 101 (111)
T ss_dssp SSSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHHCSEEEEEEEESCTTC
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCCCCc
Confidence 3689999999999999999 999999999999999988899999988876689999999876553
No 93
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.50 E-value=2.4e-13 Score=72.88 Aligned_cols=64 Identities=27% Similarity=0.513 Sum_probs=58.1
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
..+++|..|.+++||+++| |++||.|++|||.++.++++.++...++..+..+.|++.|++...
T Consensus 50 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~ 114 (124)
T 2daz_A 50 RMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNEDAV 114 (124)
T ss_dssp SCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSCSEEEEEEEECTTHH
T ss_pred cCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Confidence 3589999999999999999 999999999999999988899999888887789999999987654
No 94
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.50 E-value=4.4e-14 Score=73.54 Aligned_cols=64 Identities=28% Similarity=0.397 Sum_probs=57.6
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcce
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLL 69 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~~ 69 (81)
.+++|..|.+++||+++||++||.|++|||+++.++++.++..++...+..+.+++.|++....
T Consensus 29 ~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~g~~~~ 92 (103)
T 1v5l_A 29 QPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRLW 92 (103)
T ss_dssp EEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECCCTTTTS
T ss_pred CCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEECCeEcc
Confidence 4789999999999999999999999999999999767999999998777899999999877653
No 95
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.50 E-value=2.5e-13 Score=72.65 Aligned_cols=65 Identities=28% Similarity=0.392 Sum_probs=57.3
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcce
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDLL 69 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~~ 69 (81)
..+++|..|.+++||+++| |++||.|++|||+++.++++.++..+++.. +..+.|++.|++...+
T Consensus 44 ~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~~ 111 (122)
T 1v5q_A 44 SSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESV 111 (122)
T ss_dssp SSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEEEEECCCSC
T ss_pred CCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEECCcccc
Confidence 4568999999999999999 999999999999999976799999999775 4689999999876553
No 96
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=99.50 E-value=3.2e-13 Score=69.09 Aligned_cols=61 Identities=33% Similarity=0.543 Sum_probs=53.9
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~ 66 (81)
..+++|..|.+++||+++||+.||.|++|||+++.++++.++...++ .+..+.|++.|++.
T Consensus 28 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~-~g~~v~l~v~R~~~ 88 (93)
T 2dls_A 28 DRIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIK-SGAYVALTLLGSSS 88 (93)
T ss_dssp SSSCEEEEECSSSTTTTTTCCSSCEEEEETTEECSSSCHHHHHHHHT-SSSEEEEEEECCCC
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhc-CCCEEEEEEEECCC
Confidence 46889999999999999999999999999999999887888777776 46899999998754
No 97
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=99.50 E-value=5.3e-13 Score=71.64 Aligned_cols=64 Identities=28% Similarity=0.388 Sum_probs=56.2
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~--~~~~~~l~v~~~~~~~ 68 (81)
..+++|..|.+++||+++||++||.|++|||.++.++++.++...+.. .+..+.+++.|++..+
T Consensus 50 ~~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~ 115 (124)
T 3tsv_A 50 DVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVY 115 (124)
T ss_dssp TSCEEEEEECTTCHHHHTTCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEECHHHH
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECCchh
Confidence 468999999999999999999999999999999998777999998874 4578999999876544
No 98
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=99.50 E-value=3.9e-13 Score=69.85 Aligned_cols=62 Identities=21% Similarity=0.398 Sum_probs=56.1
Q ss_pred CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
.+++|..|.++|||+++| |++||.|++|||.++.++++.++...+...+..+.+++.|++..
T Consensus 35 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~~ 97 (104)
T 3i4w_A 35 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEE 97 (104)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEECHHH
T ss_pred CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECcch
Confidence 489999999999999999 99999999999999988899999988888778999999887543
No 99
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=99.50 E-value=3.8e-13 Score=75.71 Aligned_cols=60 Identities=17% Similarity=0.293 Sum_probs=55.9
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 64 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~ 64 (81)
..+++|..|.++++|+++| |+.||.|++|||.++.++++.++...++..+..+.|++.|+
T Consensus 110 ~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~g~~v~L~V~R~ 170 (170)
T 3egg_C 110 KLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRE 170 (170)
T ss_dssp SBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHHCCSEEEEEEEEC
T ss_pred CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeC
Confidence 4679999999999999999 99999999999999998899999999998878999999874
No 100
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=99.50 E-value=4.7e-13 Score=71.76 Aligned_cols=60 Identities=25% Similarity=0.381 Sum_probs=55.2
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 64 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~ 64 (81)
..+++|..|.+++||+++| |+.||.|++|||.++.++++.++...++..++.+.+++.|.
T Consensus 44 ~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~ 104 (125)
T 3hpk_A 44 CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 104 (125)
T ss_dssp CSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEEE
T ss_pred CCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence 3568999999999999999 99999999999999999999999999998878899998873
No 101
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=99.49 E-value=3.6e-13 Score=70.13 Aligned_cols=63 Identities=27% Similarity=0.393 Sum_probs=55.4
Q ss_pred CceEEEeeCCCCHHhhC-CCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 6 DTIFIKHVRPHSPAAAA-GLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~-gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
.+++|..|.++++|+++ ||+.||.|++|||.++.++++.++...++..++.+.|++.+.....
T Consensus 35 ~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~~ 98 (103)
T 2dc2_A 35 VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYVALEH 98 (103)
T ss_dssp EEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCCSEEEEEEEECC---
T ss_pred CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEecCCcc
Confidence 47899999999999995 9999999999999999988999999999988889999998865543
No 102
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.49 E-value=3.3e-13 Score=68.86 Aligned_cols=56 Identities=21% Similarity=0.446 Sum_probs=51.1
Q ss_pred EEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 64 (81)
Q Consensus 9 ~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~ 64 (81)
+|..|.++|||+++||+.||.|++|||.++.+.++.++...++..+..+.+++.+.
T Consensus 34 ~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l~v~p~ 89 (90)
T 1y7n_A 34 IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPA 89 (90)
T ss_dssp EEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEEEEECC
T ss_pred EEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence 79999999999999999999999999999987799999999987777888888753
No 103
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.49 E-value=2e-13 Score=73.55 Aligned_cols=64 Identities=28% Similarity=0.485 Sum_probs=57.8
Q ss_pred CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
...+++|..|.+++||+++| |++||.|++|||.++.++++.++..+++..+..+.|++.|++..
T Consensus 44 ~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~ 108 (129)
T 2dmz_A 44 EASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKTS 108 (129)
T ss_dssp CCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHHCCSSEEEEEEEESSS
T ss_pred CCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Confidence 34689999999999999999 99999999999999998789999999988667999999987654
No 104
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.5e-13 Score=71.78 Aligned_cols=64 Identities=27% Similarity=0.494 Sum_probs=57.0
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
..+++|..|.+++||+++||++||.|++|||.++..+++.++...+...+..+.+++.|.+...
T Consensus 31 ~~g~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~~~ 94 (106)
T 2eei_A 31 KKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDKETDK 94 (106)
T ss_dssp CCSCEECCCCTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHHCSEEEEEECCTTTSC
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEcCchhh
Confidence 4689999999999999999999999999999999988899999888776678999998876544
No 105
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=99.49 E-value=2.3e-13 Score=73.27 Aligned_cols=63 Identities=25% Similarity=0.438 Sum_probs=57.5
Q ss_pred CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcC-CCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIA-DLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~-~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
.+++|..|.++++|+++| |++||.|++|||.++. ++++.++..+++..+..+.|++.|+....
T Consensus 54 ~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~~~v~l~v~r~~~~~ 118 (128)
T 2db5_A 54 VDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPVHT 118 (128)
T ss_dssp EEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHHCCSEEEEEEEECCCSS
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCCCeEEEEEEcCCCCC
Confidence 479999999999999999 9999999999999997 99999999999887789999999876543
No 106
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=99.49 E-value=2.8e-13 Score=70.82 Aligned_cols=59 Identities=36% Similarity=0.484 Sum_probs=53.1
Q ss_pred CceEEEeeCCCCHHhhCC--CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC----eEEEEEEeC
Q psy5713 6 DTIFIKHVRPHSPAAAAG--LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA----YLHLLVVPK 64 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~g--l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~----~~~l~v~~~ 64 (81)
.+++|..|.++++|+++| |+.||.|++|||.++.++++.++...++..++ .+.|++.|+
T Consensus 43 ~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~~~~~v~l~v~r~ 107 (107)
T 3nfk_A 43 MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPN 107 (107)
T ss_dssp EEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGSBTTBEEEEEECC
T ss_pred CCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCcEEEEEEEcC
Confidence 468999999999999999 99999999999999999999999999987654 888888763
No 107
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=4.2e-13 Score=71.49 Aligned_cols=63 Identities=25% Similarity=0.409 Sum_probs=56.9
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
..+++|..|.++++|+++| |++||.|++|||+++.++++.++...++..+..+.|++.|+...
T Consensus 46 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~ 109 (120)
T 2eno_A 46 DSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQV 109 (120)
T ss_dssp CCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHHHCSEEEEEEEEEEEC
T ss_pred CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcC
Confidence 5689999999999999999 99999999999999998889999998887677899999886554
No 108
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=99.48 E-value=9.5e-14 Score=71.59 Aligned_cols=62 Identities=32% Similarity=0.422 Sum_probs=53.0
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC-eEEEEEEeCCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA-YLHLLVVPKEN 66 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~-~~~l~v~~~~~ 66 (81)
..+++|..|.++|||+++||++||.|++|||.++.++++.++...+...++ .+.+++.|++.
T Consensus 32 ~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~g~ 94 (98)
T 2jxo_A 32 KPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETD 94 (98)
T ss_dssp SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEECCHHHH
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCch
Confidence 348999999999999999999999999999999997679999999987754 55577766543
No 109
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.48 E-value=2.5e-13 Score=72.03 Aligned_cols=62 Identities=27% Similarity=0.443 Sum_probs=56.2
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~ 66 (81)
..+++|..|.++++|+++| |+.||.|++|||.++.+.++.++...++..+..+.|++.|...
T Consensus 49 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~r~~~ 111 (117)
T 2ehr_A 49 LKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSS 111 (117)
T ss_dssp CCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHHHHHTSCSSEEEEECCBSC
T ss_pred cCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence 4689999999999999999 9999999999999999888999999998877889999877544
No 110
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=4.2e-13 Score=68.48 Aligned_cols=60 Identities=20% Similarity=0.256 Sum_probs=53.6
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~ 65 (81)
..+++|..|.+++||+++| |++||.|++|||.++ +.++.++...++..++.+.+++.|..
T Consensus 28 ~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~~~v~l~v~~~~ 88 (91)
T 2e7k_A 28 GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASGSVILKILSGP 88 (91)
T ss_dssp SSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCCSSBCEEEECCS
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCCCeEEEEEEECC
Confidence 4689999999999999987 999999999999999 66999999999887778888888753
No 111
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.47 E-value=4.2e-13 Score=70.35 Aligned_cols=62 Identities=29% Similarity=0.527 Sum_probs=55.5
Q ss_pred CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEEEeCC
Q psy5713 4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP-AYLHLLVVPKE 65 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~~~l~v~~~~ 65 (81)
...+++|..|.+++||+++| |++||.|++|||+++.++++.++...++..+ ..+.|++.|..
T Consensus 42 ~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~R~~ 105 (108)
T 2d92_A 42 TRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSGP 105 (108)
T ss_dssp TCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSEEEEEEEECCC
T ss_pred CCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcCC
Confidence 35679999999999999999 9999999999999999889999999998864 68889988764
No 112
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=99.47 E-value=6e-13 Score=71.77 Aligned_cols=61 Identities=28% Similarity=0.355 Sum_probs=55.3
Q ss_pred CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCC
Q psy5713 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKEN 66 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~ 66 (81)
.+++|..|.++++|+++| |+.||.|++|||.++.++++.++..+++.. +..+.+++.|+..
T Consensus 43 ~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~ 106 (129)
T 2kpk_A 43 EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGYP 106 (129)
T ss_dssp EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEEEEEEEEECSC
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCC
Confidence 468999999999999999 999999999999999988899999999876 4689999998754
No 113
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=99.47 E-value=3.8e-13 Score=69.89 Aligned_cols=61 Identities=26% Similarity=0.517 Sum_probs=55.3
Q ss_pred CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713 4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~ 65 (81)
...+++|..|.+++||++ ||++||.|++|||.++.++++.++...+...+..+.+++.|+.
T Consensus 41 ~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~ 101 (103)
T 1n7t_A 41 DDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV 101 (103)
T ss_dssp SCCSEECCCBSSSSTTSS-SCCTTCEEEEETTEECSSCCHHHHHHHHHHCCSEEEEEEECCC
T ss_pred CCCCEEEEEECCCCchHH-CCCCCCEEEEECCEECCCCCHHHHHHHhhcCCCeEEEEEEecC
Confidence 456899999999999999 9999999999999999988899999988877789999998864
No 114
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=5.3e-14 Score=75.62 Aligned_cols=63 Identities=46% Similarity=0.771 Sum_probs=57.1
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
..+++|..|.+++||+++||++||.|++|||.++.++++.++..+++..+..+.|++.|.+..
T Consensus 60 ~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~ 122 (126)
T 2yuy_A 60 MDTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDSG 122 (126)
T ss_dssp CCCCCBCCCCSSSHHHHHTCCSSCCCCEETTEECSSCCHHHHHHHHHTCTTEEEEECCCCCCC
T ss_pred CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCCC
Confidence 356899999999999999999999999999999998899999999988778999999887653
No 115
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.47 E-value=3.3e-13 Score=71.33 Aligned_cols=62 Identities=35% Similarity=0.516 Sum_probs=56.0
Q ss_pred ceEEEeeCCCCHHhh-CCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 7 TIFIKHVRPHSPAAA-AGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 7 ~~~V~~v~~~s~a~~-~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
+++|..|.+++||++ +||++||.|++|||+++.++++.++..++...+..+.|++.|++...
T Consensus 44 ~~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~~ 106 (114)
T 1uew_A 44 PHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEELN 106 (114)
T ss_dssp SCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHHTTTEEEEEECCCSCCC
T ss_pred CeEEEEECCCChHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcCC
Confidence 569999999999999 99999999999999999977799999999887689999999876654
No 116
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=99.46 E-value=5.7e-13 Score=68.49 Aligned_cols=57 Identities=23% Similarity=0.436 Sum_probs=50.3
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~ 63 (81)
..+++|..|.++|||+++||+.||.|++|||+++.++++.++...+.+ ..+.+++..
T Consensus 34 ~~g~~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~l~~~l~~--~~l~ltV~~ 90 (94)
T 3kzd_A 34 IRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ--PSLGLLVRT 90 (94)
T ss_dssp SCEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHS--SEEEEEEEE
T ss_pred cCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CeEEEEEEe
Confidence 458999999999999999999999999999999998899999998875 566666653
No 117
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=99.46 E-value=1.8e-12 Score=66.60 Aligned_cols=63 Identities=13% Similarity=0.280 Sum_probs=55.6
Q ss_pred CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEEeCCC
Q psy5713 4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPKEN 66 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~--~~~~l~v~~~~~ 66 (81)
....++|..+.++++|++.| |..||.|++|||+++.++++.++.++|+..+ .+++|.+.+..+
T Consensus 26 g~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~~L~lv~p~~ 91 (95)
T 3gge_A 26 GVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEPKK 91 (95)
T ss_dssp SSSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEEECS
T ss_pred CCCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEEEEEEECccc
Confidence 35568999999999999999 9999999999999999999999999999865 478888876543
No 118
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=99.46 E-value=1e-12 Score=68.06 Aligned_cols=63 Identities=16% Similarity=0.295 Sum_probs=55.2
Q ss_pred CCCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713 3 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL 68 (81)
Q Consensus 3 ~~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~ 68 (81)
-...|++|..|.++|||+. ||++||.|++|||.++. ++.++...+... +..+.+++.|++...
T Consensus 4 ~~~~Gv~V~~V~~~spA~~-GL~~GD~I~~Ing~~v~--~~~dl~~~l~~~~~g~~v~l~v~R~g~~~ 68 (100)
T 3i18_A 4 VTYDGVYVMSVKDDVPAAD-VLHAGDLITEIDGNAFK--SSQEFIDYIHSKKVGDTVKINYKHGDKNE 68 (100)
T ss_dssp CCCCCEEEEEECTTSGGGG-TCCTTCEEEEETTBCCS--SHHHHHHHHHTSCTTCEEEEEEEETTEEE
T ss_pred EeCCCEEEEEeCCCCchHH-CCCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECCEEE
Confidence 4567999999999999995 99999999999999999 889999988763 468999999987654
No 119
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=99.46 E-value=1.2e-12 Score=68.40 Aligned_cols=62 Identities=26% Similarity=0.302 Sum_probs=53.3
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
..+++|..|.+++||+ +||++||.|++|||+++.+++..+....+...+..+.+++.|++..
T Consensus 38 ~~gv~V~~V~~~spA~-agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~ 99 (107)
T 2h2b_A 38 ETSIVISDVLKGGPAE-GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGG 99 (107)
T ss_dssp CCCEEEEEECTTSTTB-TTBCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEESCC
T ss_pred CCCEEEEEECCCCchh-hCCCCCCEEEEECCEECCCccHHHHHHHhhCCCCEEEEEEEECCCC
Confidence 4689999999999999 9999999999999999998777666666666668999999887654
No 120
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=99.46 E-value=7.6e-13 Score=75.06 Aligned_cols=64 Identities=23% Similarity=0.348 Sum_probs=57.6
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
..+++|..|.++++|+++| |++||.|++|||.++.++++.++...++..++.+.|++.|++...
T Consensus 129 ~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~~ 193 (196)
T 3gsl_A 129 DNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAE 193 (196)
T ss_dssp BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHSCCEEEEEEEEEESCCC
T ss_pred CCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHcCCCeEEEEEeCCCCcc
Confidence 3579999999999999999 999999999999999977799999999887789999999876543
No 121
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=99.46 E-value=2.4e-13 Score=73.23 Aligned_cols=62 Identities=24% Similarity=0.373 Sum_probs=56.0
Q ss_pred CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC-------CCeEEEEEEeCCCc
Q psy5713 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS-------PAYLHLLVVPKEND 67 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~-------~~~~~l~v~~~~~~ 67 (81)
.+++|..|.+++||+++| |++||.|++|||+++.++++.++...++.. +..+.|++.|+...
T Consensus 55 ~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~g~~~~~v~l~v~R~~~~ 124 (127)
T 1wg6_A 55 LGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSGP 124 (127)
T ss_dssp EEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECSCS
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhccccCCCCEEEEEEEeCCCC
Confidence 479999999999999999 999999999999999988999999999864 57999999987643
No 122
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.45 E-value=7.2e-13 Score=69.66 Aligned_cols=61 Identities=20% Similarity=0.444 Sum_probs=55.0
Q ss_pred CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCC----CeEEEEEEeCCC
Q psy5713 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP----AYLHLLVVPKEN 66 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~----~~~~l~v~~~~~ 66 (81)
.+++|..|.++++|+++| |+.||.|++|||+++.++++.++..+++... ..+.+.+.|++.
T Consensus 41 ~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~r~~~~~~l~v~R~~~ 106 (109)
T 1wi4_A 41 PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRSGP 106 (109)
T ss_dssp SSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEECCCC
T ss_pred CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccccCCCceEEEEEEeCCC
Confidence 369999999999999999 9999999999999999889999999998765 588888888754
No 123
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=3.5e-13 Score=69.79 Aligned_cols=61 Identities=21% Similarity=0.333 Sum_probs=53.5
Q ss_pred CceEEEeeCCCCHHhhC-CCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 6 DTIFIKHVRPHSPAAAA-GLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~-gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
.+++|..|.+++||+++ ||++||.|++|||+++.++ +.++...++..+..+.+++.|++..
T Consensus 35 ~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~~~~~v~l~v~R~~~~ 96 (100)
T 2edp_A 35 EPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKGSFRILKLIVRRRNSG 96 (100)
T ss_dssp EEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHTCCSSCEEEEEECCCS
T ss_pred CCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHhCCCeEEEEEEeCCCC
Confidence 46889999999999999 8999999999999999865 6778888887767889999998754
No 124
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=99.45 E-value=1.3e-12 Score=68.83 Aligned_cols=61 Identities=26% Similarity=0.415 Sum_probs=54.8
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
..|++|..|.++|||+++||++||.|++|||.++. +..++...+.. +..+.+++.|++...
T Consensus 34 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~--~~~~~~~~l~~-~~~v~l~v~R~g~~~ 94 (113)
T 2pzd_A 34 QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQ--NAEDVYEAVRT-QSQLAVQIRRGRETL 94 (113)
T ss_dssp SSCEEEEEEBTTSHHHHHTCCTTCEEEEETTEECC--SHHHHHHHHHH-CSSEEEEEEETTEEE
T ss_pred CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECC--CHHHHHHHHhC-CCeEEEEEEECCEEE
Confidence 57899999999999999999999999999999999 88999988876 478899999987654
No 125
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.45 E-value=4.1e-13 Score=71.59 Aligned_cols=65 Identities=26% Similarity=0.391 Sum_probs=57.3
Q ss_pred CCCceEEEeeCC--CCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 4 PMDTIFIKHVRP--HSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 4 ~~~~~~V~~v~~--~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
...+++|..|.+ ++||+++||+.||.|++|||+++.++++.++...+...+..+.+++.|++...
T Consensus 42 ~~~gv~V~~V~~~~~spA~~aGL~~GD~Il~Vng~~v~~~~~~dl~~~l~~~g~~v~l~v~R~g~~~ 108 (118)
T 2yub_A 42 YATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEHDPVPQ 108 (118)
T ss_dssp SCCEEEEEECCTTTSCTTHHHHCCTTCCEEEESSSBTTTSCHHHHHHHHHCCSSCEEEEEEECSSCC
T ss_pred CCCcEEEEEecCCCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHhCCCEEEEEEEECCEEE
Confidence 357899999999 99999999999999999999999966669999999876668999999987654
No 126
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.45 E-value=1e-12 Score=70.45 Aligned_cols=62 Identities=29% Similarity=0.455 Sum_probs=55.7
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS-PAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~-~~~~~l~v~~~~~~~ 68 (81)
..+++|..|.+++||+++| |++||+|++|||+++. ++.++..++... +..+.|++.|++..+
T Consensus 47 ~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~--~~~~~~~~l~~~~g~~v~l~v~R~g~~~ 110 (124)
T 1wh1_A 47 DIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ--NREEAVALLTSEENKNFSLLIARPELQL 110 (124)
T ss_dssp CCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCC--SHHHHHHHHTCSSCCSCCEEEEECSSCC
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECC--CHHHHHHHHHhCCCCEEEEEEEECCEEe
Confidence 3689999999999999999 9999999999999999 899999999875 368899999987765
No 127
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.44 E-value=2e-12 Score=69.58 Aligned_cols=63 Identities=30% Similarity=0.360 Sum_probs=55.2
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
..+++|..|.+++||+++||++||.|++|||.++.++++.++...++.. ..+.+++.|++...
T Consensus 45 ~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~v~l~v~R~g~~~ 107 (128)
T 1uf1_A 45 GLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSS-RHLILTVKDVGRLP 107 (128)
T ss_dssp TCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHTTC-SEEEEEEECCSCCS
T ss_pred CCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-CeEEEEEEECCccc
Confidence 3489999999999999999999999999999999988788888877664 68999999877654
No 128
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=99.44 E-value=8.9e-13 Score=75.24 Aligned_cols=61 Identities=26% Similarity=0.338 Sum_probs=56.1
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~ 66 (81)
..+++|..|.++|||+++||++||.|++|||.++.++++.++...++. +..+.+++.|.+.
T Consensus 109 ~~~~~V~~V~~gspA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~v~l~v~r~g~ 169 (192)
T 3k1r_A 109 GCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRT-EKTVSIKVRHIGL 169 (192)
T ss_dssp TEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHTS-SSEEEEEEEECCE
T ss_pred CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHcC-CCeEEEEEEECCc
Confidence 347899999999999999999999999999999998889999999988 7899999998765
No 129
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=99.44 E-value=1.5e-12 Score=65.84 Aligned_cols=60 Identities=27% Similarity=0.396 Sum_probs=49.5
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKEN 66 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~--~~~~~~l~v~~~~~ 66 (81)
..+++|..+ +++||+ +||++||.|++|||.++.++++.++...+.. .+..+.+++.|++.
T Consensus 26 ~~~~~v~~v-~~spA~-aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 87 (88)
T 3bpu_A 26 GGGQRVKQI-VDSPRS-RGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQTR 87 (88)
T ss_dssp SSSEEEEEC-CC--CC-TTCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEEECC
T ss_pred CCcEEEEEe-cCChhH-hCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEEEEEEeCCc
Confidence 357888887 999999 9999999999999999998888999998875 34689999988653
No 130
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=99.44 E-value=8.4e-13 Score=70.20 Aligned_cols=64 Identities=16% Similarity=0.308 Sum_probs=55.7
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC-eEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA-YLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~-~~~l~v~~~~~~~ 68 (81)
..+++|..|.+++||+++| |++||.|++|||+++.++++.++...++..+. .+.+++.|++...
T Consensus 41 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~~~~~ 106 (119)
T 1x6d_A 41 NKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLTPE 106 (119)
T ss_dssp CSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEEEECCCSS
T ss_pred CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcCCCcc
Confidence 4589999999999999999 99999999999999998899999999987654 5557777876654
No 131
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=99.44 E-value=2.7e-12 Score=67.52 Aligned_cols=64 Identities=20% Similarity=0.407 Sum_probs=56.7
Q ss_pred CCceEEEeeCCCCHHhhCCC-CCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGL-VPGDRVVAVNNQTIADLPYAEVVQLIQNSP-AYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl-~~gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~~~l~v~~~~~~~ 68 (81)
..+++|..|.++|||+++|+ +.||.|++|||.++.++++.++...+.... ..+.+.+.|++...
T Consensus 25 ~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~ 90 (112)
T 1qau_A 25 KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF 90 (112)
T ss_dssp SSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEEEECCTTS
T ss_pred CCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEEEEEEeCCccc
Confidence 35899999999999999997 999999999999999767999999997653 68999999987765
No 132
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.44 E-value=9.5e-13 Score=70.06 Aligned_cols=62 Identities=23% Similarity=0.395 Sum_probs=54.1
Q ss_pred CceEEEeeCCCCHHhhC-CCCCCCEEEEECCEEcCCCCHHHHHHHHHcC----CCeEEEEEEeCCCc
Q psy5713 6 DTIFIKHVRPHSPAAAA-GLVPGDRVVAVNNQTIADLPYAEVVQLIQNS----PAYLHLLVVPKEND 67 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~-gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~----~~~~~l~v~~~~~~ 67 (81)
+.++|..|.+++||+++ ||++||.|++|||.++.++++.++...++.. +..+.|++.|....
T Consensus 43 ~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g~~v~l~v~r~~~~ 109 (118)
T 1v6b_A 43 GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPK 109 (118)
T ss_dssp CSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECCCSC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcCCCeEEEEEEeCCcc
Confidence 45899999999999999 7999999999999999988899998888653 57899999985433
No 133
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=99.43 E-value=6.7e-13 Score=69.10 Aligned_cols=57 Identities=30% Similarity=0.441 Sum_probs=51.4
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEE
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v 61 (81)
..+++|..|.+++||+++||++||.|++|||+++.++++.++..+++..++.+.+++
T Consensus 47 ~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v 103 (104)
T 2z17_A 47 EMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIET 103 (104)
T ss_dssp SCCEEEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCHHHHHHHHHHTTTEEEEEC
T ss_pred CCCeEEEEECCCChHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEE
Confidence 458999999999999999999999999999999998899999999988766766654
No 134
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.43 E-value=1.4e-13 Score=72.44 Aligned_cols=63 Identities=33% Similarity=0.444 Sum_probs=56.7
Q ss_pred CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713 4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~ 66 (81)
...+++|..|.++++|+++| |++||.|++|||+++.++++.++...++..+..+.+++.|+..
T Consensus 42 ~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~ 105 (111)
T 1uju_A 42 TDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFE 105 (111)
T ss_dssp TCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSSCSSEEEECCCCCCC
T ss_pred CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence 35689999999999999999 9999999999999999889999999998877889998887643
No 135
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=99.43 E-value=1.8e-12 Score=67.22 Aligned_cols=59 Identities=29% Similarity=0.435 Sum_probs=51.4
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc---CCCeEEEEEEe
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN---SPAYLHLLVVP 63 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~---~~~~~~l~v~~ 63 (81)
+.+.+|..|.++|||.++||++||.|++|||.++...+++++...+.. .++.+.+.+..
T Consensus 38 ~~~~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LLV~~ 99 (101)
T 3qik_A 38 NKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLVAT 99 (101)
T ss_dssp TTEEEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEEEec
Confidence 457889999999999999999999999999999866689999999876 46788887754
No 136
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=99.43 E-value=2.8e-12 Score=67.92 Aligned_cols=59 Identities=25% Similarity=0.393 Sum_probs=52.4
Q ss_pred CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 64 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~ 64 (81)
.+++|..|.++|||+++| |++||.|++|||.++.+.++.++...++..++.+.+++.+.
T Consensus 50 ~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~ 109 (114)
T 2gzv_A 50 PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 109 (114)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEECC
T ss_pred CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEec
Confidence 469999999999999999 99999999999999966699999999987767788887653
No 137
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=99.43 E-value=1.8e-12 Score=70.37 Aligned_cols=61 Identities=15% Similarity=0.250 Sum_probs=54.4
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~ 68 (81)
..+++|..|.++|||+ +||+.||.|++|||+++. ++.++...+... +..+.+++.|++...
T Consensus 56 ~~g~~V~~V~~~spA~-aGL~~GD~I~~inG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~~ 118 (134)
T 2l97_A 56 TSGVIVRSVQSNMPAN-GHLEKYDVITKVDDKEIA--SSTDLQSALYNHSIGDTIKITYYRNGKEE 118 (134)
T ss_dssp CSCEEEEECSTTSGGG-TTSCSSCEEEEETTEECC--CHHHHHHHHHHSSTTCEEEEEEEETTEEE
T ss_pred CCCEEEEEECCCCchH-HCCCCCCEEEEECCEEcC--CHHHHHHHHHhCCCCCEEEEEEEECCEEE
Confidence 5789999999999999 999999999999999999 888998888764 479999999987654
No 138
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=99.43 E-value=2.1e-12 Score=68.62 Aligned_cols=62 Identities=21% Similarity=0.398 Sum_probs=55.3
Q ss_pred CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
.+++|..|.+++||+++| |++||.|++|||.++.+++..+....+...+..+.+++.|++..
T Consensus 38 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~~ 100 (119)
T 1tp5_A 38 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEE 100 (119)
T ss_dssp CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEECHHH
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCch
Confidence 689999999999999999 99999999999999998887787777877778999999987544
No 139
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=99.43 E-value=1.7e-12 Score=67.26 Aligned_cols=59 Identities=27% Similarity=0.395 Sum_probs=52.5
Q ss_pred ceEEEeeCCCCHHhh-CCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCC
Q psy5713 7 TIFIKHVRPHSPAAA-AGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKE 65 (81)
Q Consensus 7 ~~~V~~v~~~s~a~~-~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~--~~~~~~l~v~~~~ 65 (81)
+++|..|.+++||++ ++|+.||.|++|||+++.+.++.++..+++. .+..+.|++.|..
T Consensus 38 ~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~ 99 (101)
T 2yt7_A 38 TAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHCP 99 (101)
T ss_dssp CEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEEEECCCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence 689999999999999 5699999999999999977799999999987 4578999987753
No 140
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=99.42 E-value=3.3e-13 Score=72.91 Aligned_cols=63 Identities=14% Similarity=0.283 Sum_probs=56.1
Q ss_pred CCceEEEeeCCCCHHhhC-CCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC-eEEEEEEeCCCc
Q psy5713 5 MDTIFIKHVRPHSPAAAA-GLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA-YLHLLVVPKEND 67 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~-gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~-~~~l~v~~~~~~ 67 (81)
..+++|..|.++++|+++ ||+.||.|++|||+++.++++.++...++..++ .+.+++.|....
T Consensus 56 ~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~~ 120 (130)
T 1i16_A 56 DKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQ 120 (130)
T ss_dssp CCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEESSC
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEeCCCC
Confidence 457999999999999999 799999999999999998899999999998764 688998886543
No 141
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=99.41 E-value=3.4e-12 Score=72.62 Aligned_cols=59 Identities=27% Similarity=0.538 Sum_probs=55.1
Q ss_pred CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy5713 4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~ 63 (81)
...|++|..|.+++||++ ||+.||.|++|||+++.+.++.++...++..+..+.|.+.|
T Consensus 22 ~~~g~~V~~v~~~spA~~-gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 80 (195)
T 2qbw_A 22 DDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR 80 (195)
T ss_dssp TCCSEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEEE
T ss_pred CCCCEEEEEECCCChHHh-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence 467999999999999999 99999999999999999888999999998887899999998
No 142
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.41 E-value=6e-13 Score=70.61 Aligned_cols=62 Identities=29% Similarity=0.320 Sum_probs=55.5
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
..+++|..|.++++|+ +||++||.|++|||+++.++++.++...++..+..+.|++.|....
T Consensus 45 ~~gv~V~~V~~~spA~-~gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~ 106 (117)
T 2csj_A 45 ETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKV 106 (117)
T ss_dssp CCBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHSCSEEEEEEEEEEEC
T ss_pred CCCEEEEEECCCCccc-ccCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEEEEEEECCcc
Confidence 5579999999999997 8899999999999999998889999999988778999999886543
No 143
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=99.41 E-value=3.6e-12 Score=65.53 Aligned_cols=57 Identities=19% Similarity=0.245 Sum_probs=50.5
Q ss_pred eEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEEeCCC
Q psy5713 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPKEN 66 (81)
Q Consensus 8 ~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~--~~~~l~v~~~~~ 66 (81)
.+|..|.++|||+++||+.||+|++|||+++. ++.++...+.... ..+.+++.|++.
T Consensus 4 p~V~~V~~~spA~~aGl~~GD~I~~ing~~v~--~~~d~~~~l~~~~~~~~v~l~v~R~g~ 62 (95)
T 3id1_A 4 PVVGEIAANSIAAEAQIAPGTELKAVDGIETP--DWDAVRLQLVDKIGDESTTITVAPFGS 62 (95)
T ss_dssp CBEEEECTTSHHHHTTCCTTCEEEEETTEECS--SHHHHHHHHHHTTTCSEEEEEEECTTC
T ss_pred CEEEeeCCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHHhcCCCcEEEEEEECCC
Confidence 46889999999999999999999999999999 8899999886543 589999999874
No 144
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.40 E-value=4e-13 Score=71.44 Aligned_cols=61 Identities=34% Similarity=0.471 Sum_probs=54.2
Q ss_pred CceEEEeeCCCCHHhhC--CCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC----CeEEEEEEeCCC
Q psy5713 6 DTIFIKHVRPHSPAAAA--GLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP----AYLHLLVVPKEN 66 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~--gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~----~~~~l~v~~~~~ 66 (81)
.+++|..|.+++||+++ ||+.||.|++|||+++.++++.++...++..+ ..+.+++.|+..
T Consensus 41 ~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~~ 107 (119)
T 2cs5_A 41 MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAV 107 (119)
T ss_dssp EEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEECCCC
T ss_pred CCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCCEEEEEEEcccc
Confidence 36899999999999999 89999999999999999888999999887653 489999988754
No 145
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.40 E-value=8.4e-13 Score=68.35 Aligned_cols=62 Identities=31% Similarity=0.387 Sum_probs=51.5
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
..+++|..|.+++||+++||++||.|++|||+++.+++..++...++.. ..+.+++.|++..
T Consensus 34 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~-~~v~l~v~R~g~~ 95 (101)
T 1uez_A 34 GVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGS-KKLVLSVYSAGRI 95 (101)
T ss_dssp TCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHSSSS-SSCCEEECCCCCC
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHhhcCC-CeEEEEEEECCcc
Confidence 4589999999999999999999999999999999988776666655443 5788888876543
No 146
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=99.40 E-value=1.6e-13 Score=70.13 Aligned_cols=60 Identities=15% Similarity=0.332 Sum_probs=53.0
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL 68 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~ 68 (81)
.|++|..|.++|||++ ||++||.|++|||.++. ++.++..++... +..+.+++.|++...
T Consensus 1 ~Gv~V~~V~~~spA~~-GL~~GD~I~~InG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~~ 62 (91)
T 2kjp_A 1 NGIYASSVVENMPAKG-KIEVGDKIISADGKNYQ--SAEKLIDYISSKKAGDKVTLKIEREEKEK 62 (91)
T ss_dssp CCSSCCCCCCSSCCSS-CCCSSCEEEEETTBCCS--SHHHHHHHHSSCCSSCEECEEEESSSCEE
T ss_pred CceEEEEECCCChHHH-cCCCCCEEEEECCEECC--CHHHHHHHHHcCCCCCEEEEEEEECCEEE
Confidence 3678899999999999 99999999999999999 889999999765 468999999987654
No 147
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=99.40 E-value=2.2e-12 Score=67.90 Aligned_cols=61 Identities=28% Similarity=0.468 Sum_probs=53.9
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
..|++|..|.++|||+++||++||.|++|||+++. ++.++...+.. +..+.+++.|++...
T Consensus 34 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~--~~~~~~~~l~~-g~~v~l~v~R~g~~~ 94 (112)
T 2p3w_A 34 SSGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLV--DSSELQEAVLT-ESPLLLEVRRGNDDL 94 (112)
T ss_dssp CSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECC--SHHHHHHHHHH-CSSEEEEEEETTEEE
T ss_pred CCCeEEEEECCCChHHHCCCCCCCEEEEECCEECC--CHHHHHHHHhC-CCeEEEEEEECCEEE
Confidence 57899999999999999999999999999999999 88899888854 478899999987554
No 148
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=99.40 E-value=2e-12 Score=65.44 Aligned_cols=60 Identities=18% Similarity=0.116 Sum_probs=51.1
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCc
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKEND 67 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~ 67 (81)
.|+.|..+.|+|+|+++||++||.|++|||+++. ++.++...+... +..+.+++.|++..
T Consensus 19 ~G~~V~~~~~~s~A~~aGl~~GD~I~~ing~~v~--~~~d~~~~~~~~~~g~~v~l~v~R~g~~ 80 (87)
T 2i6v_A 19 LGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVERDGQQ 80 (87)
T ss_dssp EEEEEEECSCHHHHHHTTCCTTCEEEEETTEETT--CHHHHHHHHHTGGGCSEEEEEEEETTEE
T ss_pred EEEEEEeCCCCCHHHHCCCCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 3677888888889999999999999999999999 889988887643 46899999997754
No 149
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=4.7e-13 Score=68.89 Aligned_cols=60 Identities=23% Similarity=0.401 Sum_probs=54.4
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~ 65 (81)
..+++|..|.+++||. +||++||.|++|||+++.+.++.++...++..+..+.+++.|++
T Consensus 30 ~~~~~V~~V~~~spA~-agL~~GD~Il~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~ 89 (96)
T 2edv_A 30 SLPLTVVAVTAGGSAH-GKLFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVVRCT 89 (96)
T ss_dssp SSSCBCCCBCSSSSST-TTSCTTCBEEEESSCBSTTCCHHHHHHHHHHCSSCEEEEEEECC
T ss_pred CCCeEEEEECCCCchh-hCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence 4578899999999995 89999999999999999988899999999877789999999976
No 150
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=99.40 E-value=4.8e-12 Score=71.71 Aligned_cols=62 Identities=23% Similarity=0.404 Sum_probs=56.5
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~ 66 (81)
..+++|..|.|+|||+++| |+.||.|++|||+++.++++.+....+...+..+.+++.|++.
T Consensus 34 ~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~r~~~ 96 (196)
T 3gsl_A 34 DPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP 96 (196)
T ss_dssp CCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEEECC
T ss_pred CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEecCC
Confidence 5689999999999999999 9999999999999999888988888888877899999988653
No 151
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.2e-12 Score=69.35 Aligned_cols=60 Identities=22% Similarity=0.369 Sum_probs=53.3
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
.+++|..|.+++||+++||++||.|++|||.++.++++.++..++.. ..+.|++.|....
T Consensus 44 ~gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~--~~v~l~v~R~p~~ 103 (114)
T 2d8i_A 44 RRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ--PSLGLLVRTYPEL 103 (114)
T ss_dssp EEEEEEECCTTSSHHHHTCCTTCCEEEESSCBGGGCCHHHHHHHHTS--SEEEEEEEECCCS
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC--CcEEEEEEECCCC
Confidence 47899999999999999999999999999999997778899888875 4888999886544
No 152
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=99.39 E-value=7.6e-13 Score=67.92 Aligned_cols=62 Identities=21% Similarity=0.426 Sum_probs=54.4
Q ss_pred CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713 4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL 68 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~ 68 (81)
...|++|..|.++|||++ ||++||.|++|||.++. ++.++..++... +..+.+++.|++...
T Consensus 3 ~~~Gv~V~~V~~~spA~~-GL~~GD~Il~InG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~~ 66 (94)
T 2kl1_A 3 EAKGVYVMSVLPNMPAAG-RLEAGDRIAAIDGQPIN--TSEQIVSYVREKQAGDRVRVTFIRDRKQH 66 (94)
T ss_dssp CCCCEECCCCCTTSTTBT-TBCTTCEEEEETTBCCC--CHHHHHHHHHHSCTTCCEEEEEEETTEEE
T ss_pred CCCcEEEEEECCCChHHh-CCCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECCEEE
Confidence 356899999999999999 99999999999999999 788999888764 469999999987654
No 153
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=99.39 E-value=1.6e-12 Score=77.51 Aligned_cols=64 Identities=20% Similarity=0.209 Sum_probs=57.7
Q ss_pred CCceEEEeeCCCCHHhh-CCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAA-AGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~-~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
..+++|..|.++++|++ +||+.||.|++|||+++.++++.++..+++..+..+.|++.|.....
T Consensus 102 ~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g~~V~L~V~R~~~~~ 166 (263)
T 1z87_A 102 KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVS 166 (263)
T ss_dssp TEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHCCSCCCEEEECCSSSS
T ss_pred CCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEEEEEEeCcccc
Confidence 35799999999999999 68999999999999999999999999999988888999999866543
No 154
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=99.38 E-value=1.4e-12 Score=81.32 Aligned_cols=64 Identities=28% Similarity=0.388 Sum_probs=57.4
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~--~~~~~~l~v~~~~~~~ 68 (81)
..|++|..|.+||||+++||++||.|++|||.++.++++.++...+.. .+..+.+++.|++..+
T Consensus 30 ~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~v~r~~~~~ 95 (391)
T 3tsz_A 30 DVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVY 95 (391)
T ss_dssp TTEEEEEEECTTCHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECHHHH
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEEEeeCCccc
Confidence 478999999999999999999999999999999998889999999985 5579999999876543
No 155
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.38 E-value=2.5e-12 Score=66.99 Aligned_cols=59 Identities=22% Similarity=0.307 Sum_probs=52.5
Q ss_pred eEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHc-----CCCeEEEEEEeCCC
Q psy5713 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQN-----SPAYLHLLVVPKEN 66 (81)
Q Consensus 8 ~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~-----~~~~~~l~v~~~~~ 66 (81)
++|..|.+++||+++| |++||.|++|||.++.++++.++..+++. ..+.+.+.+.|.+.
T Consensus 34 ~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~~~i~l~v~r~~~ 98 (103)
T 1ufx_A 34 PRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEFNS 98 (103)
T ss_dssp CEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEECCCCC
T ss_pred EEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCCCCeEEEEEEEccc
Confidence 4899999999999999 99999999999999998889999999976 34688888887653
No 156
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.38 E-value=1.5e-12 Score=70.14 Aligned_cols=60 Identities=25% Similarity=0.377 Sum_probs=54.0
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeC
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPK 64 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~ 64 (81)
..+++|..|.+++||+++| |++||.|++|||.++.+.++.++...++.. +..+.|++.|+
T Consensus 48 ~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v~l~V~R~ 110 (126)
T 1wif_A 48 GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRG 110 (126)
T ss_dssp TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEESS
T ss_pred CCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEEC
Confidence 3468899999999999999 999999999999999877999999999873 46899999987
No 157
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.38 E-value=2.1e-12 Score=67.95 Aligned_cols=64 Identities=17% Similarity=0.362 Sum_probs=56.7
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
..+++|..|.++++|+++| |++||.|++|||+++.++++.++...+...+..+.+++.|++..+
T Consensus 38 ~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~~~ 102 (113)
T 1um7_A 38 GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEEY 102 (113)
T ss_dssp TCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSCCSEEEEEEECCHHHH
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECcchh
Confidence 3688999999999999999 999999999999999988888988888877789999998876544
No 158
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=99.37 E-value=3.6e-12 Score=68.44 Aligned_cols=62 Identities=32% Similarity=0.422 Sum_probs=53.8
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC-eEEEEEEeCCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA-YLHLLVVPKEN 66 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~-~~~l~v~~~~~ 66 (81)
..+++|..|.+++||+++||+.||.|++|||.++.++++.++..++....+ .+.+++.|++.
T Consensus 32 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~g~ 94 (128)
T 2kjd_A 32 KPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETD 94 (128)
T ss_dssp SCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEEECHHHH
T ss_pred CCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEeCCc
Confidence 358999999999999999999999999999999997779999999987654 56688877654
No 159
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=99.37 E-value=4.7e-12 Score=72.53 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=56.4
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
..+++|..|.++++|+++| |+.||.|++|||+++.++++.++...++..+..+.|++.|....
T Consensus 135 ~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~V~R~~~~ 198 (206)
T 3r0h_A 135 EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPKPT 198 (206)
T ss_dssp SSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEECCC
T ss_pred CceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCC
Confidence 3578999999999999999 99999999999999998888999999988778999999885443
No 160
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=99.37 E-value=3.5e-12 Score=67.29 Aligned_cols=63 Identities=33% Similarity=0.517 Sum_probs=54.3
Q ss_pred CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC-CCc
Q psy5713 4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK-END 67 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~-~~~ 67 (81)
...+++|..|.++++|+++||++||.|++|||+++.+++..++...+... ..+.+++.|+ +..
T Consensus 39 ~~~gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~-~~v~l~v~r~~g~~ 102 (114)
T 1x5n_A 39 QKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSS-RSLTISIVAAAGRE 102 (114)
T ss_dssp SSCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHHC-SSEEEEECSSTTTH
T ss_pred CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-CeEEEEEEcCCCCc
Confidence 44689999999999999999999999999999999988777788877765 6788998887 544
No 161
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.35 E-value=1.5e-12 Score=68.68 Aligned_cols=60 Identities=23% Similarity=0.350 Sum_probs=53.1
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC-eEEEEEEeCC
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA-YLHLLVVPKE 65 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~-~~~l~v~~~~ 65 (81)
.+++|..|.++++|+++||+.||.|++|||.++.++++.++...+...++ .+.+++.+..
T Consensus 36 ~~v~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~v~l~V~~~~ 96 (111)
T 1vae_A 36 TPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLL 96 (111)
T ss_dssp SSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEECEE
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEecC
Confidence 46789999999999999999999999999999998899999999987654 6888887643
No 162
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=99.35 E-value=1.4e-11 Score=70.45 Aligned_cols=61 Identities=25% Similarity=0.228 Sum_probs=55.3
Q ss_pred CCceEEEeeCCCCHHhhC-CCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713 5 MDTIFIKHVRPHSPAAAA-GLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~-gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~ 65 (81)
..+++|..|.+++||+++ ||+.||.|++|||+++.++++.++...+...+..+.+++.|+.
T Consensus 32 ~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~ 93 (200)
T 2qt5_A 32 DGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYEL 93 (200)
T ss_dssp SSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSEEEEEEEEEC
T ss_pred CCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEeccC
Confidence 457899999999999999 8999999999999999988889999888877789999998865
No 163
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=99.35 E-value=4.2e-12 Score=64.50 Aligned_cols=60 Identities=30% Similarity=0.507 Sum_probs=51.6
Q ss_pred ceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeCCCcc
Q psy5713 7 TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS-PAYLHLLVVPKENDL 68 (81)
Q Consensus 7 ~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~-~~~~~l~v~~~~~~~ 68 (81)
.++|..|.++++|+++||+.||.|++|||+++. ++.++...+... +..+.+++.|++...
T Consensus 5 ~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~--~~~~~~~~l~~~~g~~v~l~v~R~g~~~ 65 (91)
T 2zpm_A 5 EPVLENVQPNSAASXAGLQAGDRIVXVDGQPLT--QWVTFVMLVRDNPGXSLALEIERQGSPL 65 (91)
T ss_dssp -CBCSEECTTSHHHHTTCCTTCEEEEETTEECC--CHHHHHHHHHHCTTCCEEEEEEETTEEE
T ss_pred CeEEEEECCCChHHhcCCCCCCEEEEECCeEcC--CHHHHHHHHhcCCCCeEEEEEEECCeEE
Confidence 356888999999999999999999999999999 889999888764 368899999987654
No 164
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=99.34 E-value=1.2e-11 Score=70.86 Aligned_cols=63 Identities=24% Similarity=0.237 Sum_probs=56.3
Q ss_pred CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCC--CCHHHHHHHHHcCCCe-EEEEEEeCCCcc
Q psy5713 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIAD--LPYAEVVQLIQNSPAY-LHLLVVPKENDL 68 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~--~~~~~~~~~l~~~~~~-~~l~v~~~~~~~ 68 (81)
.+++|..|.++++|+++| |+.||.|++|||+++.+ +++.++...++..+.. +.+++.|++...
T Consensus 45 ~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~ 111 (206)
T 3r0h_A 45 TGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPE 111 (206)
T ss_dssp SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHHHSCCSSEEEEEEECCSSCC
T ss_pred CCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHHHhcCCCceEEEEEecccCC
Confidence 479999999999999998 99999999999999998 7799999988887766 999999876543
No 165
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=99.33 E-value=2.4e-12 Score=81.76 Aligned_cols=64 Identities=28% Similarity=0.388 Sum_probs=57.6
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~--~~~~~~l~v~~~~~~~ 68 (81)
..|++|..|.+||||+++||++||.|++|||.++.+.++.++...++. .+..+.|++.|++..+
T Consensus 22 ~~Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~V~r~g~~~ 87 (468)
T 3shw_A 22 DVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVY 87 (468)
T ss_dssp TTEEEEEEECSSSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECHHHH
T ss_pred cCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECCccc
Confidence 468999999999999999999999999999999998889999999987 5579999999876543
No 166
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.32 E-value=3.2e-11 Score=62.01 Aligned_cols=60 Identities=22% Similarity=0.371 Sum_probs=52.2
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCc
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKEND 67 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~ 67 (81)
.+++|..|.++ |.++||++||.|++|||+++.++++.++.+.++.. +..+.|++.|++..
T Consensus 32 ~Gv~V~~v~~~--a~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~~ 93 (96)
T 1ujv_A 32 TGQRVKQILDI--QGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSGP 93 (96)
T ss_dssp TEEEEEEESCG--GGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECCSSC
T ss_pred CCEEEEEEecc--cccCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCCC
Confidence 47889999883 77899999999999999999988899999999875 46999999987654
No 167
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=99.32 E-value=1.2e-11 Score=70.67 Aligned_cols=63 Identities=25% Similarity=0.419 Sum_probs=56.9
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~ 67 (81)
..+++|..|.++++|+++| |++||.|++|||.++.++++.++..++...+..+.+++.|++..
T Consensus 134 ~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~ 197 (200)
T 2qt5_A 134 SRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEYDVSV 197 (200)
T ss_dssp CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEEEEEEEC
T ss_pred CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCcc
Confidence 3588999999999999999 99999999999999999999999999988667999999886543
No 168
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=99.32 E-value=1.8e-11 Score=69.82 Aligned_cols=62 Identities=29% Similarity=0.398 Sum_probs=56.0
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKEN 66 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~ 66 (81)
..+++|..|.+++||+++| |+.||.|++|||+++.++++.++...+... +..+.+++.|++.
T Consensus 35 ~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~ 99 (196)
T 1p1d_A 35 SSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVA 99 (196)
T ss_dssp SCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTCCSSSEEEEEEEECSC
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEecCC
Confidence 4578999999999999999 999999999999999988899999999876 4689999998775
No 169
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=99.31 E-value=1.6e-11 Score=70.10 Aligned_cols=61 Identities=25% Similarity=0.415 Sum_probs=55.6
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~ 65 (81)
..+++|..|.++++|+++| |++||.|++|||.++.++++.++..++...+..+.+++.|++
T Consensus 134 ~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~ 195 (196)
T 1p1d_A 134 GDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKDE 195 (196)
T ss_dssp TCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTCEEEEEECCC
T ss_pred CCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEeCC
Confidence 4688999999999999999 999999999999999966699999999887779999998865
No 170
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.31 E-value=5.2e-12 Score=67.77 Aligned_cols=63 Identities=21% Similarity=0.421 Sum_probs=56.0
Q ss_pred CceEEEeeCCCCHHhhCCC-CCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEEEeCCCcc
Q psy5713 6 DTIFIKHVRPHSPAAAAGL-VPGDRVVAVNNQTIADLPYAEVVQLIQNSP-AYLHLLVVPKENDL 68 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl-~~gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~~~l~v~~~~~~~ 68 (81)
.+++|..|.+++||+++|+ +.||.|++|||+++.++++.++...+.... ..+.+++.|++...
T Consensus 33 ~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~ 97 (127)
T 1b8q_A 33 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF 97 (127)
T ss_dssp SCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSCEEEEEECCCCSE
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEeCCceE
Confidence 4799999999999999997 999999999999999777999999998754 68999999887654
No 171
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=99.31 E-value=9.6e-12 Score=64.89 Aligned_cols=60 Identities=18% Similarity=0.136 Sum_probs=49.0
Q ss_pred ceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCCcc
Q psy5713 7 TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKENDL 68 (81)
Q Consensus 7 ~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~--~~~~~~l~v~~~~~~~ 68 (81)
|+.|....|+++|+++||++||.|++|||+++. ++.++...+.. .+..+.+++.|++...
T Consensus 38 G~~V~~~~pas~A~~aGl~~GDvI~~ing~~v~--~~~d~~~~~~~~~~g~~v~l~v~R~g~~~ 99 (105)
T 2i4s_A 38 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVERDGQQH 99 (105)
T ss_dssp EEEEEECSCTHHHHHHTCCTTCEEEEETTEETT--STTHHHHHHHHHTTCSEEEEEEEETTEEE
T ss_pred EEEEecCCCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCeEEEEEEECCEEE
Confidence 566777788888899999999999999999999 67777777653 3468999999987543
No 172
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=99.29 E-value=2.2e-11 Score=74.92 Aligned_cols=62 Identities=24% Similarity=0.388 Sum_probs=56.1
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~ 68 (81)
..|++|..|.++|||+++||++||+|++|||+++. ++.++...+... +..+.+++.|++...
T Consensus 262 ~~G~~V~~V~~~spA~~aGL~~GDvI~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~~ 325 (345)
T 3stj_A 262 QRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLGLLRNGKPL 325 (345)
T ss_dssp CSSEEEEEECTTSHHHHHTCCTTCEECEETTEECS--CHHHHHHHHHTSCTTCEEEEEEEETTEEE
T ss_pred CceEEEEEeccCChHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 46899999999999999999999999999999999 899999988763 479999999988755
No 173
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=99.28 E-value=3e-11 Score=73.64 Aligned_cols=61 Identities=26% Similarity=0.415 Sum_probs=55.4
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
..|++|..|.+++||+++||++||.|++|||+++. ++.++...+.. +..+.+++.|++...
T Consensus 255 ~~gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~--~~~~l~~~l~~-~~~v~l~v~R~g~~~ 315 (325)
T 1lcy_A 255 QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQ--NAEDVYEAVRT-QSQLAVQIRRGRETL 315 (325)
T ss_dssp SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECC--SHHHHHHHHTT-CSSEEEEEEETTEEE
T ss_pred CCCeEEEEeCcCChHHHCCCCCCCEEEEECCEEcC--CHHHHHHHHhC-CCeEEEEEEECCEEE
Confidence 46899999999999999999999999999999999 88999999876 478999999987655
No 174
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=99.28 E-value=6.2e-11 Score=74.76 Aligned_cols=62 Identities=31% Similarity=0.455 Sum_probs=57.0
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcce
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLL 69 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~~ 69 (81)
.|++|..|.++++|+++||++||.|++|||+++. ++.++..+++..++.+.+++.|++..+.
T Consensus 363 ~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~--~~~~~~~~l~~~~~~v~l~v~R~g~~~~ 424 (436)
T 4a8c_A 363 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVN--SIAEMRKVLAAKPAIIALQIVRGNESIY 424 (436)
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHhCCCeEEEEEEECCEEEE
Confidence 5899999999999999999999999999999999 8999999998877799999999887663
No 175
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=99.27 E-value=1.5e-10 Score=64.52 Aligned_cols=60 Identities=22% Similarity=0.397 Sum_probs=49.0
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEEEeC
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP-AYLHLLVVPK 64 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~~~l~v~~~ 64 (81)
..+++|..|.++|||+++||+.||.|++|||+++.+++......++.... ..+.+++.+.
T Consensus 26 ~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~v~l~vr~~ 86 (166)
T 1w9e_A 26 DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDR 86 (166)
T ss_dssp TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECC
T ss_pred CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEcC
Confidence 46899999999999999999999999999999999776644555665544 5889988443
No 176
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=99.27 E-value=3.7e-11 Score=73.01 Aligned_cols=62 Identities=23% Similarity=0.459 Sum_probs=55.6
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~--~~~~~~l~v~~~~~~~ 68 (81)
..+++|..|.+++||+++||++||.|++|||+++. ++.++...+.. .+..+.+++.|++...
T Consensus 243 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~~ 306 (318)
T 1te0_A 243 LQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAI--SALETMDQVAEIRPGSVIPVVVMRDDKQL 306 (318)
T ss_dssp CCCEEEEEECTTSTTTTTCCCTTCCEEEETTEECC--CHHHHHHHHHTSCTTCEEEEEEESSSCEE
T ss_pred CCcEEEEEeCCCChHHHCCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 46899999999999999999999999999999999 88999998875 3479999999987765
No 177
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=99.26 E-value=6.1e-11 Score=63.72 Aligned_cols=60 Identities=18% Similarity=0.287 Sum_probs=51.9
Q ss_pred CCCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCC
Q psy5713 3 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKEN 66 (81)
Q Consensus 3 ~~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~--~~~~~~l~v~~~~~ 66 (81)
....+++|..|.+++||+++ |++||.|++|||+++. ++.++...+.. .+..+.+++ |++.
T Consensus 22 ~~~~gv~V~~V~~~spA~~a-L~~GD~Il~InG~~v~--~~~dl~~~l~~~~~g~~v~l~V-R~g~ 83 (125)
T 2hga_A 22 HQPDGVQIDSVVPGSPASKV-LTPGLVIESINGMPTS--NLTTYSAALKTISVGEVINITT-DQGT 83 (125)
T ss_dssp -CCCCEEEEEECSSSGGGGT-SCTTCEEEEETTEECS--SHHHHHHHHTTCCTTCEEEEEE-TTEE
T ss_pred CCCCceEEEEECCCChHHHh-cCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEE-ECCE
Confidence 34578999999999999999 9999999999999999 88999988874 346889999 8765
No 178
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=99.26 E-value=1.4e-10 Score=61.31 Aligned_cols=61 Identities=20% Similarity=0.252 Sum_probs=52.2
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL 68 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~ 68 (81)
.+.+|..+.+ ++..+||++||.|++|||.++.++++.++...++.. +..+.|++.|++...
T Consensus 34 ~g~~V~~I~~--~~~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~V~R~g~~~ 96 (113)
T 3soe_A 34 TGQKVKMILD--SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPS 96 (113)
T ss_dssp TEEEEEEESC--GGGSTTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEEEEESSCC-
T ss_pred CCcEEEEecC--hHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCccC
Confidence 3567888877 578899999999999999999999999999999976 359999999987644
No 179
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=98.89 E-value=6.3e-13 Score=70.26 Aligned_cols=57 Identities=30% Similarity=0.475 Sum_probs=49.3
Q ss_pred CceEEEeeCCCCHHhh-CCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEE
Q psy5713 6 DTIFIKHVRPHSPAAA-AGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~-~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~ 62 (81)
.+++|..|.++|||++ +||++||.|++|||.++.+.++.++...++..++.+.+++.
T Consensus 53 ~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v~l~V~ 110 (112)
T 2lob_A 53 VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV 110 (112)
Confidence 4789999999999999 89999999999999999877889999988776666666553
No 180
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=99.22 E-value=1.2e-10 Score=70.85 Aligned_cols=62 Identities=21% Similarity=0.165 Sum_probs=54.9
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEe-CCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVP-KENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~-~~~~~ 68 (81)
..+++|..|.+++||+++||+.||+|++|||+++. ++.++...+... +..+.+++.| ++...
T Consensus 241 ~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~~g~~~ 305 (324)
T 1y8t_A 241 TLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPIN--SADALVAAVRSKAPGATVALTFQDPSGGSR 305 (324)
T ss_dssp SSSEEEEEECTTSTTTTTTCCTTCEEEEETTEECC--SHHHHHHHHHTSCTTCEEEEEEECSSCCEE
T ss_pred CCceEEEEECCCChHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCCCEE
Confidence 56899999999999999999999999999999999 888999888653 4789999999 77654
No 181
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=99.19 E-value=9.8e-11 Score=74.18 Aligned_cols=61 Identities=16% Similarity=0.262 Sum_probs=55.8
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
.|++|..|.++|+|+++||++||.|++|||+++. ++.++.+++...+..+.+.+.|++..+
T Consensus 386 ~Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~--~~~~~~~~l~~~~~~v~l~v~R~g~~~ 446 (451)
T 3pv2_A 386 IGVQVVGASENSAGWRAGIRPGDIIISANKKPVT--DVKSLQTIAQEKKKELLVQVLRGPGSM 446 (451)
T ss_dssp EEEEEEEECTTSHHHHHTCCTTCEEEEETTEECC--SHHHHHHHTTSSCSCEEEEEEETTEEE
T ss_pred CceEEEEECCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHhcCCCeEEEEEEECCEEE
Confidence 5789999999999999999999999999999999 889999999887678999999987654
No 182
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=99.19 E-value=1.1e-11 Score=72.08 Aligned_cols=61 Identities=33% Similarity=0.436 Sum_probs=53.7
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeE-EEEEEeCCC
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYL-HLLVVPKEN 66 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~-~l~v~~~~~ 66 (81)
.+++|..|.++++|+++||+.||+|++|||.++.++++.++..++...+..+ .+++.|++.
T Consensus 33 ~gv~V~~V~~gSpA~~aGL~~GD~Il~VNG~~V~~~s~~dl~~~l~~~g~~v~~l~V~R~g~ 94 (216)
T 2krg_A 33 PGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETD 94 (216)
T ss_dssp CSCBEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCTHHHHHHHHHHCSEEEEEECCHHHH
T ss_pred CCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCeEEEEEEEECCE
Confidence 4899999999999999999999999999999999889999999887666677 777776553
No 183
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=99.17 E-value=2.4e-10 Score=65.91 Aligned_cols=61 Identities=20% Similarity=0.339 Sum_probs=48.2
Q ss_pred CCCceEEEeeCCCCHHhhCCCCCC-CEEEEECCEEcCCCCHHHHHHHH-H-cCCCeEEEEEEeCCC
Q psy5713 4 PMDTIFIKHVRPHSPAAAAGLVPG-DRVVAVNNQTIADLPYAEVVQLI-Q-NSPAYLHLLVVPKEN 66 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~gl~~g-d~i~~ing~~~~~~~~~~~~~~l-~-~~~~~~~l~v~~~~~ 66 (81)
...|++|..|.++|||+++||+.| |.|++|||+++.++ .++...+ . ..+..+.+++.|++.
T Consensus 14 ~~~G~~V~~V~~~SpA~~AGL~~G~D~I~~ing~~v~~~--~~~~~~~~~~~~g~~v~l~v~R~~~ 77 (209)
T 3rle_A 14 GTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKD--NDTLKDLLKANVEKPVKMLIYSSKT 77 (209)
T ss_dssp SSEEEEEEEECTTSHHHHTTCCTTTEEEEEETTEECCSS--SSHHHHHHHHTTTSCEEEEEEETTT
T ss_pred CCCEEEEEEECCCCHHHHCCCCcCCeEEEEECCEECcCH--HHHHHHHHhcCCCCEEEEEEEecCC
Confidence 456899999999999999999999 99999999999944 3333332 2 234689999988653
No 184
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=99.17 E-value=2.9e-10 Score=72.05 Aligned_cols=61 Identities=26% Similarity=0.423 Sum_probs=55.0
Q ss_pred CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL 68 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~ 68 (81)
.|++|..|.++|||+++||+.||+|++|||+++. ++.++...+... +..+.+++.|++...
T Consensus 282 ~G~~V~~V~~~spA~~aGL~~GDvI~~vnG~~v~--~~~~l~~~l~~~~~g~~v~l~V~R~g~~~ 344 (451)
T 3pv2_A 282 QGALVSQVNPNSPAELAGLKAGDIITQINDTKIT--QATQVKTTISLLRVGSTVKIIVERDNKPL 344 (451)
T ss_dssp CCEEEEEECTTSHHHHHTCCTTCEEEEETTEECC--SHHHHHHHHHTSCTTCEEEEEEEETTEEE
T ss_pred ceEEEEecCCCChHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 7899999999999999999999999999999999 889999888753 479999999987655
No 185
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=99.16 E-value=3.1e-10 Score=71.59 Aligned_cols=62 Identities=24% Similarity=0.388 Sum_probs=54.7
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~ 68 (81)
..|++|..|.++|||+++||+.||.|++|||+++. ++.++...+... +..+.+++.|++...
T Consensus 262 ~~G~~V~~V~~~spA~~aGL~~GD~I~~vnG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~~ 325 (436)
T 4a8c_A 262 QRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLGLLRNGKPL 325 (436)
T ss_pred CcceEEEEECCCChHHHCCCCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 46899999999999999999999999999999999 888888888653 468999999987654
No 186
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=99.13 E-value=8.3e-10 Score=68.70 Aligned_cols=62 Identities=19% Similarity=0.359 Sum_probs=54.7
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeCCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS-PAYLHLLVVPKEN 66 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~-~~~~~l~v~~~~~ 66 (81)
.++++|..|.+++||.++||++||.|++|||+++.+++..++...++.. +..+.+++.|++.
T Consensus 98 ~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 160 (388)
T 1fc6_A 98 GKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGA 160 (388)
T ss_dssp SSCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTE
T ss_pred CCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCCC
Confidence 4689999999999999999999999999999999977778888888654 3689999998776
No 187
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=99.13 E-value=1.4e-10 Score=71.29 Aligned_cols=61 Identities=18% Similarity=0.378 Sum_probs=54.7
Q ss_pred CceEEEeeCCCCHHhhCCCCC-----------CCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVP-----------GDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL 68 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~-----------gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~ 68 (81)
.|++|..|.+++||+++||+. ||+|++|||+++. ++.++...+... ++++.+++.|++...
T Consensus 251 ~Gv~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~v~--~~~dl~~~l~~~~~g~~v~l~v~R~g~~~ 324 (348)
T 3qo6_A 251 SGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVS--NGSDLYRILDQCKVGDEVTVEVLRGDHKE 324 (348)
T ss_dssp SSEEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBCCS--SSHHHHHHHTTCCTTCEEEEEEECSSSEE
T ss_pred ceEEEEEecCCChHHHcCCccccccccCCCCCCCEEEEECCEEeC--CHHHHHHHHHhCCCcCEEEEEEEECCEEE
Confidence 689999999999999999999 9999999999999 788999988653 479999999987755
No 188
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.13 E-value=4.2e-10 Score=74.61 Aligned_cols=62 Identities=21% Similarity=0.365 Sum_probs=56.5
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~ 66 (81)
..|++|..|.++++|+++| |+.||.|++|||.++.+.++.++...++..++.+.|.+.|+..
T Consensus 330 ~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~~~~~v~L~v~r~~~ 392 (721)
T 2xkx_A 330 GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE 392 (721)
T ss_pred CCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHHHhcCCeEEEEEEeCch
Confidence 3689999999999999999 9999999999999999888999999998887888999887654
No 189
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.12 E-value=3.7e-10 Score=74.89 Aligned_cols=62 Identities=23% Similarity=0.404 Sum_probs=56.7
Q ss_pred CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713 5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~ 66 (81)
..+++|..|.++++|+++| |+.||.|++|||.++.++++.++...++..+..+.+++.|++.
T Consensus 88 ~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~ 150 (721)
T 2xkx_A 88 DPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP 150 (721)
T ss_pred CCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHhhccccccceEEEeccc
Confidence 5689999999999999999 9999999999999999999999999888777888999988753
No 190
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=99.04 E-value=4.3e-10 Score=64.89 Aligned_cols=58 Identities=26% Similarity=0.433 Sum_probs=50.3
Q ss_pred CceEEEeeCCCCHHhhCCCCC-CCEEEEECCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeCCC
Q psy5713 6 DTIFIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQNS-PAYLHLLVVPKEN 66 (81)
Q Consensus 6 ~~~~V~~v~~~s~a~~~gl~~-gd~i~~ing~~~~~~~~~~~~~~l~~~-~~~~~l~v~~~~~ 66 (81)
.|++|..|.++|||+++||++ ||.|++||+. +. ++.++...+... +..+.+++.|++.
T Consensus 112 ~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing~-v~--~~~~l~~~l~~~~g~~v~l~v~r~~~ 171 (209)
T 3rle_A 112 NVWHVLEVESNSPAALAGLRPHSDYIIGADTV-MN--ESEDLFSLIETHEAKPLKLYVYNTDT 171 (209)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTTEEEEEESSC-CC--SSSCHHHHHHHTTTSCEEEEEEETTT
T ss_pred cceEEEEeCCCChHHHCCCCCCCCEEEECCCE-eC--CHHHHHHHHHhCCCCeEEEEEEECCc
Confidence 688999999999999999999 9999999997 77 677788877765 4689999988754
No 191
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=99.01 E-value=5.6e-10 Score=69.59 Aligned_cols=62 Identities=24% Similarity=0.413 Sum_probs=54.0
Q ss_pred ceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEEeCCCcc
Q psy5713 7 TIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPKENDL 68 (81)
Q Consensus 7 ~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~--~~~~l~v~~~~~~~ 68 (81)
+++|..|.++|||+++| |+.||.|++|||.++.++++.++...++..+ ..+.+++.|.+...
T Consensus 233 g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~~~v~l~v~r~~~~~ 297 (388)
T 3suz_A 233 TVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVT 297 (388)
T ss_dssp CCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCTTCSCEEEEEEECCSCC
T ss_pred CEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhccCCCccccccccccccc
Confidence 58899999999999999 9999999999999999888888888887753 46899998876544
No 192
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=99.00 E-value=3.5e-11 Score=73.49 Aligned_cols=61 Identities=26% Similarity=0.515 Sum_probs=0.0
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
..|++|..|.++|||+++||+.||.|++|||+++. ++.++...+.. +..+.+++.|++...
T Consensus 253 ~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~--~~~~~~~~l~~-~~~v~l~v~R~g~~~ 313 (332)
T 3num_A 253 ISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVV--SANDVSDVIKR-ESTLNMVVRRGNEDI 313 (332)
T ss_dssp ----------------------------------------------------------------
T ss_pred CCceEEEEeccCCChHHcCCCCCCEEEEECCEECC--CHHHHHHHHhC-CCeEEEEEEECCEEE
Confidence 46889999999999999999999999999999998 78888888865 568899999987654
No 193
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=98.98 E-value=1.1e-09 Score=71.37 Aligned_cols=61 Identities=15% Similarity=0.274 Sum_probs=50.7
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~--~~~~~~l~v~~~~~~~ 68 (81)
.++++|..|.++|||.++||++||+|++|||.++. ..++..++.. .+..+.+++.|++...
T Consensus 495 ~~gv~V~~V~~~spA~~AGL~~GD~I~aInG~~v~---~~~l~~~l~~~~~g~~v~l~v~R~g~~~ 557 (597)
T 4fgm_A 495 PQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQAT---EQSVKRILERYIPGDTVTIHAFRRDELM 557 (597)
T ss_dssp TTEEEEEEECTTSHHHHHTCCTTCEEEEETTEECC---TTTHHHHHTTCCTTCEEEEEEEETTEEE
T ss_pred CCeEEEEEeCCCChHHHCCCCCCCEEEEECCEECC---HHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 45789999999999999999999999999999995 3456666654 3479999999987654
No 194
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=98.88 E-value=6.5e-10 Score=70.40 Aligned_cols=62 Identities=24% Similarity=0.409 Sum_probs=53.9
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~--~~~~~~l~v~~~~~~~ 68 (81)
..|++|..|.+++||+++||+.||.|++|||+++. ++.++...+.. .+..+.+++.|++...
T Consensus 285 ~~G~~V~~V~~gspA~~AGL~~GDvI~~inG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~~ 348 (448)
T 1ky9_A 285 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPIS--SFAALRAQVGTMPVGSKLTLGLLRDGKQV 348 (448)
T ss_dssp CCSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCC--SSHHHHHHTTSSBTTCCCEEEEESSSCEE
T ss_pred CCceEEEEeccCCHHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence 36899999999999999999999999999999999 77888888864 3478899999887653
No 195
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=98.88 E-value=2.3e-09 Score=67.20 Aligned_cols=57 Identities=30% Similarity=0.355 Sum_probs=47.4
Q ss_pred ceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713 7 TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66 (81)
Q Consensus 7 ~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~ 66 (81)
.++|..|.++|||+++||++||+|++|||.++.+++ +...++..+..+.+++.|++.
T Consensus 91 ~~~V~~V~~gsPA~~AGL~~GD~I~~InG~~v~~~~---~~~~l~~~g~~v~l~v~R~g~ 147 (403)
T 3k50_A 91 NALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKV---ESELLQGSTRQLQIGVYKEVV 147 (403)
T ss_dssp EEEEEEECTTSHHHHTTCCTTCEEEEETTBCBCTTT---GGGGTSCSCEEEEEEEEEEEC
T ss_pred eEEEEEeCCCChHHHcCCCCCCEEEEECCEEccchh---HHHHhhCCCCEEEEEEEeCCc
Confidence 378999999999999999999999999999998653 555565544689999988754
No 196
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=98.85 E-value=3.9e-08 Score=54.70 Aligned_cols=54 Identities=19% Similarity=0.359 Sum_probs=47.3
Q ss_pred EEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEE
Q psy5713 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62 (81)
Q Consensus 9 ~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~ 62 (81)
+|..+.++++|+++||+.||.|++|||.++.++....+...+.+.+..+.+.+.
T Consensus 110 ~v~~v~~~s~a~~aGl~~GD~I~~ing~~v~~~~~~~v~~~v~r~g~~~~l~v~ 163 (166)
T 1w9e_A 110 KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM 163 (166)
T ss_dssp EEEEECTTSHHHHTTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEE
T ss_pred EEEEEccCCHHHHcCCCCCCEEEEECCEECCCCChHHHHHHHhhCCCEEEEEEE
Confidence 788999999999999999999999999999988888887777777677766654
No 197
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=98.85 E-value=2.9e-10 Score=71.99 Aligned_cols=62 Identities=24% Similarity=0.472 Sum_probs=0.0
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 68 (81)
..+++|..|.++++|+++||+.||.|++|||+++. ++.++..++...++.+.+.+.|++...
T Consensus 382 ~~gv~V~~V~~gspA~~aGL~~GDiI~~vng~~v~--~~~~l~~~l~~~~~~v~l~v~R~g~~~ 443 (448)
T 1ky9_A 382 DQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVK--NIAELRKVLDSKPSVLALNIQRGDSTI 443 (448)
T ss_dssp ----------------------------------------------------------------
T ss_pred CCeEEEEEecCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHcCCCeEEEEEEECCEEE
Confidence 35788999999999999999999999999999999 788999888876568888888877654
No 198
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=98.76 E-value=8.4e-10 Score=68.78 Aligned_cols=56 Identities=23% Similarity=0.395 Sum_probs=0.0
Q ss_pred EEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 64 (81)
Q Consensus 9 ~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~ 64 (81)
+|..|.++++|+++||++||.|++|||.++.+.++.++...++..++.+.+++.+.
T Consensus 318 ~I~~V~~gs~A~~aGL~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~~~v~L~V~p~ 373 (388)
T 3suz_A 318 IICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPA 373 (388)
T ss_dssp --------------------------------------------------------
T ss_pred EEEEeecCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEec
Confidence 68899999999999999999999999999988889999999988777888887643
No 199
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=98.63 E-value=7.3e-08 Score=62.35 Aligned_cols=63 Identities=16% Similarity=0.246 Sum_probs=49.1
Q ss_pred CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCC--------HHHHHHHHHc--CCCeEEEEEEeCCCcc
Q psy5713 5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLP--------YAEVVQLIQN--SPAYLHLLVVPKENDL 68 (81)
Q Consensus 5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~--------~~~~~~~l~~--~~~~~~l~v~~~~~~~ 68 (81)
..|++|..|.++|||+++ |+.||.|+++||+++.... ..++..++.. .++++.+++.|+++..
T Consensus 276 ~~Gv~V~~V~~~spA~~a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~Gk~~ 348 (539)
T 4fln_A 276 NEGVLVRRVEPTSDASKV-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGEHK 348 (539)
T ss_dssp SBCEEEEEECTTSGGGGT-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEETTEEE
T ss_pred cCceeeecccCCChHHhC-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEECCEEE
Confidence 469999999999999876 9999999999999996321 1123444443 3479999999988765
No 200
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=98.50 E-value=8e-07 Score=57.60 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=48.6
Q ss_pred CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC-eEEEE
Q psy5713 4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA-YLHLL 60 (81)
Q Consensus 4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~-~~~l~ 60 (81)
..++++|..|.+++++..+|++.||+|++|||+++. +..++.+++.++.+ .+.+.
T Consensus 413 ~~~gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~V~--s~~~l~~~l~~~k~~~l~~~ 468 (539)
T 4fln_A 413 GEQIVILSQVLANEVNIGYEDMNNQQVLKFNGIPIR--NIHHLAHLIDMCKDKYLVFE 468 (539)
T ss_dssp TCCCEEEEEECCCGGGTTCSSCCSEEEEEETTEECC--SHHHHHHHHHTCCSSEEEEE
T ss_pred CceEEEEEEecCCchhhhcCCCCCCEEEeECCEEcC--CHHHHHHHHHHcCCCeEEEE
Confidence 346899999999999999999999999999999999 99999999998865 44444
No 201
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=98.48 E-value=5.3e-07 Score=61.33 Aligned_cols=59 Identities=12% Similarity=0.179 Sum_probs=49.1
Q ss_pred CCceEEEeeCCC--------CHHhhCC--CCCCCEEEEECCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeCCC
Q psy5713 5 MDTIFIKHVRPH--------SPAAAAG--LVPGDRVVAVNNQTIADLPYAEVVQLIQNS-PAYLHLLVVPKEN 66 (81)
Q Consensus 5 ~~~~~V~~v~~~--------s~a~~~g--l~~gd~i~~ing~~~~~~~~~~~~~~l~~~-~~~~~l~v~~~~~ 66 (81)
.++++|..+.++ +||.++| |+ ||+|++|||+++..+ .++...++.. +..+.|++.|++.
T Consensus 747 ~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~--~~~~~~~~~~~g~~v~l~v~r~~~ 816 (1045)
T 1k32_A 747 GDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAG--SNIYRVLSEKAGTSARIRLSGKGG 816 (1045)
T ss_dssp TTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTT--BCHHHHHHTTTTSEEEEEEECSSS
T ss_pred CCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccch--hhHHHhhcCCCCCEEEEEEECCCC
Confidence 457889999987 9999999 99 999999999999854 4667777654 3689999998764
No 202
>3dor_A Protein CT_858, CPAF; mature CPAF, dimer, transferase; 2.20A {Chlamydia trachomatis} PDB: 3dpm_A* 3dpn_A 3dja_A
Probab=75.45 E-value=4.7 Score=26.90 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=15.9
Q ss_pred CCCCCCEEEEECCEEcC
Q psy5713 23 GLVPGDRVVAVNNQTIA 39 (81)
Q Consensus 23 gl~~gd~i~~ing~~~~ 39 (81)
++..||.|++|||.++.
T Consensus 109 ~I~vGdEIlsING~pv~ 125 (583)
T 3dor_A 109 EIRVGDELLEVDGAPVQ 125 (583)
T ss_dssp SSCTTCEEEEETTEEHH
T ss_pred CCCCCCEEEEECCccHH
Confidence 69999999999999986
No 203
>3cbn_A Conserved protein MTH639; RP-A, PSI-II, NYSGXRC, structural genomics, protein initiative; 1.63A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=50.10 E-value=14 Score=20.34 Aligned_cols=40 Identities=15% Similarity=0.315 Sum_probs=25.6
Q ss_pred CCCCEEEEECCEE-cCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713 25 VPGDRVVAVNNQT-IADLPYAEVVQLIQNSPAYLHLLVVPKE 65 (81)
Q Consensus 25 ~~gd~i~~ing~~-~~~~~~~~~~~~l~~~~~~~~l~v~~~~ 65 (81)
..||+|+.|+-.. ..++ ..++...++.....+.+++.-.+
T Consensus 36 prGDCIIgV~Adk~~~dl-~~efk~~l~~~~~~i~v~i~~~~ 76 (151)
T 3cbn_A 36 ETADCIIGVSSSDSISTL-PDEMKRAIARESSLVRVILRTEN 76 (151)
T ss_dssp TTCTTEEEBSCSCCGGGS-CHHHHHHHSCCC-EEEEEEECSS
T ss_pred CCCCEEEEEccCCChhHc-CHHHHHHHhCCCCeEEEEEEeCC
Confidence 4699999998443 3333 34777888775447777666544
No 204
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=40.75 E-value=10 Score=22.09 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=29.1
Q ss_pred hhCCCCCCCEEEEECCEEcCCCCH---HHHHHHHHcCC-CeEEEEEEeC
Q psy5713 20 AAAGLVPGDRVVAVNNQTIADLPY---AEVVQLIQNSP-AYLHLLVVPK 64 (81)
Q Consensus 20 ~~~gl~~gd~i~~ing~~~~~~~~---~~~~~~l~~~~-~~~~l~v~~~ 64 (81)
.+.|+..|..++++||.++.+... .++...+.... .++.+.....
T Consensus 53 ~~d~~~~~~~~~~~ng~~~~~~~~~d~~~v~~~iigk~N~PLyir~f~~ 101 (219)
T 2j3t_D 53 QRDGIRVGHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRP 101 (219)
T ss_dssp CCTTCCTTCEEEEETTEECBTTBCTTSSBHHHHTTCGGGCSEEEEEECC
T ss_pred ccCCccccceeeecCCccCCCcccccCceeeeeeecCCCCceEEEecCC
Confidence 446799999999999999986422 24455443332 4666655543
No 205
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.93 E-value=65 Score=16.86 Aligned_cols=52 Identities=10% Similarity=0.094 Sum_probs=34.6
Q ss_pred HHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcceee
Q psy5713 18 PAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLLQL 71 (81)
Q Consensus 18 ~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~~~~ 71 (81)
.+...++......+-.+|+.+. +.+.+...=-+.+++++|.+.......+++
T Consensus 46 ls~~~~iP~e~qrLIy~GKiLK--D~eTL~~~gIk~g~TIhLvi~s~~p~~~p~ 97 (118)
T 2daf_A 46 FSHLLGIPHSVLQIRYSGKILK--NNETLVQHGVKPQEIVQVEIFSTNPDLYPV 97 (118)
T ss_dssp HHHHHTCCTTTEEEEETTEEEC--SSCCHHHHSCCSSCEEEEEEEESCTTTSCC
T ss_pred HHhhhCCChHHEEEEECCeEcC--CcchHHHcCCCCCCEEEEEEecCCCccCcc
Confidence 3455678888888899999998 433333332344579999888765555443
No 206
>1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A {Escherichia coli} SCOP: c.56.5.3 c.50.1.1
Probab=29.73 E-value=14 Score=24.23 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=18.7
Q ss_pred CCCCHHhhCCCCCCCEEEEECCEEcC
Q psy5713 14 RPHSPAAAAGLVPGDRVVAVNNQTIA 39 (81)
Q Consensus 14 ~~~s~a~~~gl~~gd~i~~ing~~~~ 39 (81)
.++.+...+ .++||+|.+.||+.++
T Consensus 323 ~ENm~sg~A-~rPgDVits~~GkTVE 347 (503)
T 1gyt_A 323 CENMPGGRA-YRPGDVLTTMSGQTVE 347 (503)
T ss_dssp EEECCSTTC-CCTTCEEECTTSCEEE
T ss_pred eccCCCCCC-CCCCCEEEeCCCcEEE
Confidence 344444443 8899999999999886
No 207
>3pei_A Cytosol aminopeptidase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich; HET: MSE; 2.70A {Francisella tularensis subsp}
Probab=29.03 E-value=17 Score=23.75 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=17.2
Q ss_pred eeCCCCHHhhCCCCCCCEEEEECCEEcC
Q psy5713 12 HVRPHSPAAAAGLVPGDRVVAVNNQTIA 39 (81)
Q Consensus 12 ~v~~~s~a~~~gl~~gd~i~~ing~~~~ 39 (81)
...++.+...+ .++||+|.+.||+.++
T Consensus 302 ~~~ENm~sg~A-~rPgDVits~~G~TVE 328 (486)
T 3pei_A 302 GLAENAVDARS-YRPGDVLKSMKGITVE 328 (486)
T ss_dssp EEEEC-------CCTTEEEECTTCCEEE
T ss_pred EeeccCCCCCC-CCCCCEEEeCCCcEEE
Confidence 34455555554 8999999999999885
No 208
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=25.65 E-value=39 Score=15.21 Aligned_cols=18 Identities=17% Similarity=0.206 Sum_probs=10.6
Q ss_pred CCCCHHhhCCCCCCCEEE
Q psy5713 14 RPHSPAAAAGLVPGDRVV 31 (81)
Q Consensus 14 ~~~s~a~~~gl~~gd~i~ 31 (81)
.|.......|+.+||.+.
T Consensus 26 IPkeiR~~Lgi~~Gd~l~ 43 (59)
T 1yfb_A 26 IPIELRRTLGIAEKDALE 43 (59)
T ss_dssp CCHHHHHHTTCCTTCEEE
T ss_pred eCHHHHHHcCCCCCCEEE
Confidence 344455556777777664
No 209
>3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family, IDP01962 aminopeptidase, hydrolase, manganese, metal-binding, protea structural genomics; HET: PGE PG4; 1.80A {Coxiella burnetii}
Probab=25.52 E-value=18 Score=23.61 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=18.6
Q ss_pred CCCCHHhhCCCCCCCEEEEECCEEcC
Q psy5713 14 RPHSPAAAAGLVPGDRVVAVNNQTIA 39 (81)
Q Consensus 14 ~~~s~a~~~gl~~gd~i~~ing~~~~ 39 (81)
.++.+...+ .++||+|...||+.++
T Consensus 303 ~ENm~sg~A-~rPgDVits~~GkTVE 327 (482)
T 3ij3_A 303 VENAIGSRS-YRPGDVVQTRARKTIE 327 (482)
T ss_dssp EEECCSTTC-CCTTCEEECTTSCEEE
T ss_pred eccCCCCCC-CCCCCEEEeCCCCEEE
Confidence 344444443 8899999999999875
No 210
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=25.20 E-value=58 Score=14.77 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=15.0
Q ss_pred HhhCCCCCCCEEEEECCEEcC
Q psy5713 19 AAAAGLVPGDRVVAVNNQTIA 39 (81)
Q Consensus 19 a~~~gl~~gd~i~~ing~~~~ 39 (81)
+.+.|+.+.+..+-.+|+...
T Consensus 34 ~~~~gi~~~~qrL~~~G~~L~ 54 (79)
T 2uyz_B 34 CQRQGVPMNSLRFLFEGQRIA 54 (79)
T ss_dssp HHHHTCCGGGEEEEETTEECC
T ss_pred HHHHCCCcccEEEEECCEEeC
Confidence 344577777777778888776
No 211
>3jru_B Probable cytosol aminopeptidase; bacterial blight, XOO0834, PEPA, xanthomonas oryzae PV. ORYZ KACC10331, hydrolase, manganese; 2.60A {Xanthomonas oryzae PV}
Probab=24.91 E-value=19 Score=23.57 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=18.6
Q ss_pred CCCCHHhhCCCCCCCEEEEECCEEcC
Q psy5713 14 RPHSPAAAAGLVPGDRVVAVNNQTIA 39 (81)
Q Consensus 14 ~~~s~a~~~gl~~gd~i~~ing~~~~ 39 (81)
.++.+...+ .++||+|...||+.++
T Consensus 315 ~ENm~sg~A-~rPgDVit~~~G~TVE 339 (490)
T 3jru_B 315 VENAIDGNA-YRPSDVITSMSGKTIE 339 (490)
T ss_dssp EEECCSTTC-CCTTCEEECTTSCEEE
T ss_pred eccCCCCCC-CCCCCEEEecCCcEEE
Confidence 344444443 8899999999999885
No 212
>1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase (A aminoacylpeptide); 1.60A {Bos taurus} SCOP: c.56.5.3 c.50.1.1 PDB: 1lan_A 1lcp_A* 1lap_A 1bpn_A 1bpm_A 1bll_E* 2j9a_A* 2ewb_A*
Probab=24.78 E-value=15 Score=23.97 Aligned_cols=25 Identities=40% Similarity=0.458 Sum_probs=18.6
Q ss_pred CCCCHHhhCCCCCCCEEEEECCEEcC
Q psy5713 14 RPHSPAAAAGLVPGDRVVAVNNQTIA 39 (81)
Q Consensus 14 ~~~s~a~~~gl~~gd~i~~ing~~~~ 39 (81)
.++.+...+ .++||+|.+.||+.++
T Consensus 303 ~ENm~sg~A-~rPgDVits~~GkTVE 327 (484)
T 1lam_A 303 CENMPSGKA-NKPGDVVRARNGKTIQ 327 (484)
T ss_dssp EEECCSTTS-CCTTEEEECTTSCEEE
T ss_pred eccCCCCCC-CCCCCEEEeCCCcEEE
Confidence 344444443 8899999999999875
No 213
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=24.28 E-value=41 Score=17.92 Aligned_cols=23 Identities=22% Similarity=0.509 Sum_probs=16.0
Q ss_pred eEEEeeCCCCHHhhCCCCCCCEEE
Q psy5713 8 IFIKHVRPHSPAAAAGLVPGDRVV 31 (81)
Q Consensus 8 ~~V~~v~~~s~a~~~gl~~gd~i~ 31 (81)
-+|..+ +.+-+.+.|+++||.+.
T Consensus 103 ~~VLEl-~aG~~~~~gi~~Gd~v~ 125 (136)
T 3pjy_A 103 AYVLEL-NAGTVKRLGVSPGDRLE 125 (136)
T ss_dssp EEEEEE-ETTHHHHHTCCTTCEEE
T ss_pred eEEEEe-CcChHHhcCCCCCCEEE
Confidence 345555 44566667999999985
No 214
>3kzw_A Cytosol aminopeptidase; hydrolase, manganese binding, protease, structural genomics; 2.70A {Staphylococcus aureus subsp}
Probab=24.24 E-value=20 Score=23.67 Aligned_cols=25 Identities=20% Similarity=0.318 Sum_probs=18.4
Q ss_pred CCCCHHhhCCCCCCCEEEEECCEEcC
Q psy5713 14 RPHSPAAAAGLVPGDRVVAVNNQTIA 39 (81)
Q Consensus 14 ~~~s~a~~~gl~~gd~i~~ing~~~~ 39 (81)
.++.+...+ .++||+|...||+.++
T Consensus 336 ~ENm~sg~A-~rPgDVits~~GkTVE 360 (515)
T 3kzw_A 336 AENMINEAS-MKPDDVFTALSGETVE 360 (515)
T ss_dssp EEECCCTTC-CCTTCEEECTTSCEEE
T ss_pred eccCCCCCC-CCCCCEEEeCCCCEEE
Confidence 344444443 8899999999999885
No 215
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=23.79 E-value=38 Score=14.61 Aligned_cols=15 Identities=20% Similarity=0.118 Sum_probs=8.4
Q ss_pred CHHhhCCCCCCCEEE
Q psy5713 17 SPAAAAGLVPGDRVV 31 (81)
Q Consensus 17 s~a~~~gl~~gd~i~ 31 (81)
......|+..||.+.
T Consensus 19 ~ir~~lgi~~Gd~v~ 33 (53)
T 2l66_A 19 KVRQKFQIKEGDLVK 33 (53)
T ss_dssp HHHHHSCCCTTCEEE
T ss_pred HHHHHcCcCCCCEEE
Confidence 344455666666654
No 216
>2hc9_A Leucine aminopeptidase 1; carbonate, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics; 1.85A {Caenorhabditis elegans} PDB: 2hb6_A
Probab=23.25 E-value=22 Score=23.33 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=18.6
Q ss_pred CCCCHHhhCCCCCCCEEEEECCEEcC
Q psy5713 14 RPHSPAAAAGLVPGDRVVAVNNQTIA 39 (81)
Q Consensus 14 ~~~s~a~~~gl~~gd~i~~ing~~~~ 39 (81)
.++.+...+ .++||+|...||+.++
T Consensus 305 ~ENm~sg~A-~rPgDVits~~GkTVE 329 (491)
T 2hc9_A 305 VENNVSPIA-NKPDDIIKMLSGKTVE 329 (491)
T ss_dssp EEECCSTTS-CCTTCEEECTTSCEEE
T ss_pred eecCCCCCC-CCCCCEEEeCCCcEEE
Confidence 344444443 8899999999999885
No 217
>3kr4_A M17 leucyl aminopeptidase; protease, hydrolase; HET: BES 1PE; 2.00A {Plasmodium falciparum} PDB: 3kqz_A* 3kqx_A* 3kr5_A* 3t8w_A*
Probab=22.20 E-value=23 Score=23.41 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=18.4
Q ss_pred CCCCHHhhCCCCCCCEEEEECCEEcC
Q psy5713 14 RPHSPAAAAGLVPGDRVVAVNNQTIA 39 (81)
Q Consensus 14 ~~~s~a~~~gl~~gd~i~~ing~~~~ 39 (81)
.++.+...+ .++||+|...||+.++
T Consensus 347 ~ENm~sg~A-~rPgDVit~~~GkTVE 371 (528)
T 3kr4_A 347 CENMVSKNS-YRPGDIITASNGKTIE 371 (528)
T ss_dssp EEECCSTTS-CCTTCEEECTTSCEEE
T ss_pred eccCCCCCC-CCCCCEEEeCCCcEEE
Confidence 344444443 8899999999999875
No 218
>3h8g_F Cytosol aminopeptidase; hydrolase, manganese, metal-binding, proteas; HET: BES; 1.50A {Pseudomonas putida} PDB: 3h8e_A 3h8f_A*
Probab=22.16 E-value=18 Score=23.71 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=18.5
Q ss_pred CCCCHHhhCCCCCCCEEEEECCEEcC
Q psy5713 14 RPHSPAAAAGLVPGDRVVAVNNQTIA 39 (81)
Q Consensus 14 ~~~s~a~~~gl~~gd~i~~ing~~~~ 39 (81)
.++.+...+ .++||+|.+.||+.++
T Consensus 320 ~ENm~~g~A-~rPgDVit~~~G~TVE 344 (497)
T 3h8g_F 320 AENMPSGGA-TRPGDIVTTMSGQTVE 344 (497)
T ss_dssp EEECCSTTS-CCTTEEEECTTSCEEE
T ss_pred eccCCCCCC-CCCCCEEEeCCCcEEE
Confidence 344444443 8899999999999875
No 219
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=21.81 E-value=49 Score=17.76 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=14.9
Q ss_pred EEEeeCCCCHHhhCCCCCCCEEE
Q psy5713 9 FIKHVRPHSPAAAAGLVPGDRVV 31 (81)
Q Consensus 9 ~V~~v~~~s~a~~~gl~~gd~i~ 31 (81)
+|..+ +.+-+.+.|+++||.+.
T Consensus 118 ~VLEl-~aG~~~~~gi~~Gd~v~ 139 (140)
T 3m7a_A 118 AVLEI-NGGLAARLGIKPGDKVE 139 (140)
T ss_dssp EEEEE-ETTHHHHHTCCTTCEEE
T ss_pred EEEEe-CcChHHHcCCCCCCEEe
Confidence 34454 34566667899999874
No 220
>3qj7_A TS, tsase, thymidylate synthase; thymidilate synthase, structural genomics, TB structural GEN consortium, TBSGC, transferase; HET: UMP SPM; 2.50A {Mycobacterium tuberculosis} SCOP: d.117.1.1
Probab=20.53 E-value=60 Score=19.47 Aligned_cols=49 Identities=27% Similarity=0.361 Sum_probs=34.7
Q ss_pred HhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC-eEEEEEEeCCCcc
Q psy5713 19 AAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA-YLHLLVVPKENDL 68 (81)
Q Consensus 19 a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~-~~~l~v~~~~~~~ 68 (81)
|...|+++|+.+..+++--+-..-.+.+..++.+.+. .-++.+ ++...+
T Consensus 190 A~~~gl~~G~~~h~~gdaHIY~nh~e~~~~qL~R~p~~~P~l~i-~~~~~~ 239 (264)
T 3qj7_A 190 AAQAGLSVGEFIWTGGDCHIYDNHVEQVRLQLSREPRPYPKLLL-ADRDSI 239 (264)
T ss_dssp HHHHTCEEEEEEEEEEEEEEEGGGHHHHHHHHTSCCCCCCEEEE-ECCSSG
T ss_pred HHhcCCeeeEEEEEEEEEEEEHHHHHHHHHHhcCCCCCCCEEEe-CCCCCh
Confidence 5667899999999999888865567777778877652 334455 554444
No 221
>4efd_A Aminopeptidase; structural genomics, structural genomics consortium, SGC, hydrolase; 2.45A {Trypanosoma brucei brucei}
Probab=20.41 E-value=25 Score=23.26 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=18.2
Q ss_pred CCCCHHhhCCCCCCCEEEEECCEEcC
Q psy5713 14 RPHSPAAAAGLVPGDRVVAVNNQTIA 39 (81)
Q Consensus 14 ~~~s~a~~~gl~~gd~i~~ing~~~~ 39 (81)
.++.+...+ .++||+|...||+.++
T Consensus 343 ~ENm~sg~A-~rPgDVits~~GkTVE 367 (522)
T 4efd_A 343 AENAIGPKS-YRNDDIIVMKSGKTVE 367 (522)
T ss_dssp EECCC-CCS-TTTTEEEECTTSCEEE
T ss_pred eccCCCCCC-CCCCCEEEecCCcEEE
Confidence 345554443 8899999999999874
Done!