RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5713
(81 letters)
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 84.2 bits (208), Expect = 5e-23
Identities = 31/67 (46%), Positives = 44/67 (65%)
Query: 1 MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
EPMDTIF+K V+ PA AGL GDR++ VN +++ Y++V+ LIQNS L L
Sbjct: 56 RLEPMDTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELS 115
Query: 61 VVPKEND 67
V+PK++
Sbjct: 116 VMPKDSG 122
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 79.6 bits (197), Expect = 9e-22
Identities = 26/67 (38%), Positives = 35/67 (52%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
D+ +I+ V P SPAA +GL DR++ VN Q + L +AEVV I+ LLV
Sbjct: 24 DKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLV 83
Query: 62 VPKENDL 68
V L
Sbjct: 84 VGPSTRL 90
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 78.5 bits (194), Expect = 4e-21
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
F+ V P PA AG+ GDR+VAV +++ L + E V IQ + + L VV E D
Sbjct: 32 QFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVDPEAD 91
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 78.1 bits (193), Expect = 4e-21
Identities = 24/60 (40%), Positives = 32/60 (53%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
FIK V+ PA AGL D ++ VN + D PY +VV IQ+S + LLV K+
Sbjct: 29 SFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKKAQ 88
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 78.2 bits (193), Expect = 7e-21
Identities = 18/66 (27%), Positives = 30/66 (45%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
+ + V P A AG+ GDR++ VN + + +VV LI+ L L V
Sbjct: 39 ELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
Query: 62 VPKEND 67
+ E++
Sbjct: 99 LSVESE 104
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 77.0 bits (190), Expect = 1e-20
Identities = 26/66 (39%), Positives = 37/66 (56%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
IK + P SPA AAGL D VVAVN +++ L + VV++I+ LLV+ KE +
Sbjct: 32 QIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKEAE 91
Query: 68 LLQLTS 73
+ S
Sbjct: 92 SIYSLS 97
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A
2ocs_A
Length = 91
Score = 76.5 bits (189), Expect = 2e-20
Identities = 24/66 (36%), Positives = 37/66 (56%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
++ +I+ V P SPA AGL+ GDR+V VN + + + +VV I+ + + LLV
Sbjct: 23 EKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLV 82
Query: 62 VPKEND 67
V E D
Sbjct: 83 VDPETD 88
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 75.4 bits (186), Expect = 5e-20
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
IK + P SPA AAGL D VVAVN +++ L + VV++I+ LLV+ KE +
Sbjct: 31 QIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKELE 90
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70
kDa, Na/PI cotransporter C- terminal-associated
protein, NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 75.6 bits (186), Expect = 7e-20
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
++ D I+ + SPA AGL+ GDRV+ +N + +A+VV+L++ S + LLV
Sbjct: 34 EKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLV 93
Query: 62 VPKEND 67
+ ++
Sbjct: 94 LDGDSY 99
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 74.7 bits (184), Expect = 1e-19
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
D + V SPA AGL GD + +N +++ L + +VV+L+ S + L
Sbjct: 30 DVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRT 89
Query: 62 VPKEND 67
EN
Sbjct: 90 TALENT 95
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI,
signaling protein; 1.80A {Mus musculus}
Length = 106
Score = 74.8 bits (184), Expect = 1e-19
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
++ D I+ + SPA AGL+ GDRV+ +N + +A+VV+L++ S + LLV
Sbjct: 22 EKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLV 81
Query: 62 VPKEND 67
+ ++
Sbjct: 82 LDGDSY 87
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 74.7 bits (184), Expect = 1e-19
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
+++ + P A AG++ D ++ VN + + D + EVV+ ++ S + + L+V KE D
Sbjct: 34 VYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDKETD 93
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 74.7 bits (184), Expect = 1e-19
Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
D+ FI+ V P SPA A+GL DR+V VN + + +VV I+ LLV
Sbjct: 29 DKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLV 88
Query: 62 VPKEND 67
V +E D
Sbjct: 89 VDRETD 94
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 73.3 bits (180), Expect = 6e-19
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
I ++ SPA AGL GD + +N + Y +VV LI++S L +
Sbjct: 44 CSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIET 103
Query: 62 V 62
+
Sbjct: 104 L 104
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation,
cell projection, disease mutation, membrane,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 216
Score = 74.4 bits (182), Expect = 2e-18
Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
D+ FI+ V P SPA A+GL DR+V VN + + +VV I+ LLV
Sbjct: 29 DKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLV 88
Query: 62 VPKEND 67
V +E D
Sbjct: 89 VDRETD 94
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding;
1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 71.3 bits (175), Expect = 2e-18
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63
F+ V SPA AGL PGD + +VN + + + E+V +I+ S L L +
Sbjct: 39 TFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLY 94
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ
domain, protein, acetylation, cell projection, disease
mutation, membrane; NMR {Homo sapiens}
Length = 128
Score = 71.4 bits (175), Expect = 5e-18
Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
D+ FI+ V P SPA A+GL DR+V VN + + +VV I+ LLV
Sbjct: 29 DKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLV 88
Query: 62 VPKEND 67
V +E D
Sbjct: 89 VDRETD 94
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 69.6 bits (171), Expect = 7e-18
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63
+ V SPA GL GD+++AVN + + +VV+LI LH+++
Sbjct: 25 CVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIAE 80
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 70.1 bits (172), Expect = 8e-18
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65
+ ++ V PA AGL D V+ +N + + E+ I++ P+ + LLV
Sbjct: 38 VRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRVS 95
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 69.9 bits (171), Expect = 1e-17
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 1 MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
+++ V A AGL GD ++ VN Q + + + +VV +I+ L +
Sbjct: 40 TPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVK 99
Query: 61 VVP 63
VV
Sbjct: 100 VVM 102
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 70.4 bits (172), Expect = 1e-17
Identities = 16/67 (23%), Positives = 28/67 (41%)
Query: 1 MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
+++ V A AGL GD ++ VN Q + + + +VV +I+ L +
Sbjct: 60 TPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVK 119
Query: 61 VVPKEND 67
VV
Sbjct: 120 VVMVTRH 126
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 68.5 bits (168), Expect = 2e-17
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
+++K++RP P GL P DR++ VN+ D VV LI S L L++
Sbjct: 34 VYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVI 87
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 67.1 bits (164), Expect = 1e-16
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
IF+ V SPA + L D ++A+NN + E + + + HL++
Sbjct: 30 IFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVM 83
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 66.9 bits (164), Expect = 1e-16
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
+ I V S AA A L PGD + A+N ++ + + E I+ +L L V
Sbjct: 34 LTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSV 87
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 66.2 bits (162), Expect = 2e-16
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
+ ++ V PA AGL D V+ +N + + E+ I++ P+ + LLV
Sbjct: 26 VRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVW 80
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 66.2 bits (162), Expect = 3e-16
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
+ I + P S AAAA L PGD ++A++ + +A+ I+ + L L +
Sbjct: 31 LVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKI 84
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 65.4 bits (160), Expect = 4e-16
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
I + V A AA L PGD +VA+N Q+ ++ +AE I+ S + L L +
Sbjct: 32 IIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQL 85
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma
homolog, phosphorylation, signaling PR LIM domain, PDZ
domain; 1.5A {Homo sapiens}
Length = 88
Score = 64.6 bits (158), Expect = 7e-16
Identities = 10/54 (18%), Positives = 24/54 (44%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
+ I ++ AA A + GD V++++ + + E I+ L++ +
Sbjct: 29 LTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTL 82
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 64.6 bits (158), Expect = 9e-16
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
+ I + P AA AG+ GD V++++ + L + E I+ L L +
Sbjct: 29 LSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGL 82
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ
domain, arhgef11, KIAA0380, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 64.3 bits (157), Expect = 1e-15
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65
+ ++ VRP A AG+ GDR++ VN + + + EVV+LI++ Y+ L ++
Sbjct: 31 VLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIKSGA-YVALTLLGSS 87
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 64.3 bits (157), Expect = 1e-15
Identities = 9/54 (16%), Positives = 25/54 (46%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
+ I ++ A+ A + GD V++++ + + + E I+ L++ +
Sbjct: 31 LTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTL 84
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein;
1.70A {Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 63.8 bits (156), Expect = 1e-15
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
I + V A A L PGD +VA+N ++ + +AE I+ SP+ L L +
Sbjct: 28 IMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQL 81
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 63.4 bits (155), Expect = 2e-15
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
+ I + P S AA + L GD VVA++ + + E I+++ L L +
Sbjct: 27 LTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTL 80
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 64.4 bits (157), Expect = 2e-15
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
I + SPA L GDR++AVN Q+I ++P+A++V+LI+++ + L
Sbjct: 39 STITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLR 98
Query: 61 VVPKEN 66
++P+E
Sbjct: 99 IIPQEE 104
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 63.5 bits (155), Expect = 2e-15
Identities = 11/55 (20%), Positives = 25/55 (45%)
Query: 10 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 64
I + S AA GL+ + +N Q + L +++ ++ S + + ++P
Sbjct: 27 ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA 81
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 64.1 bits (156), Expect = 3e-15
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA-YLHLLVV 62
+ + + PH A+ AG GD +V++ L +EV++L+++ + + VV
Sbjct: 38 VQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVV 93
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 62.4 bits (152), Expect = 7e-15
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
+ I V P S AA A L GD + A++ + +++ + E I+ L L V
Sbjct: 29 LAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTV 82
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 62.1 bits (151), Expect = 1e-14
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
IFI HV+P S +A GL GD++V VN ++L + E V ++++S + L + +V
Sbjct: 43 IFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRS-LTISIVAAAGR 101
Query: 68 LLQLTSD 74
L +T
Sbjct: 102 ELFMTDR 108
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 61.6 bits (150), Expect = 2e-14
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
IFI V PAA AG+ GD+++ VN + + E V+ ++ + + + V
Sbjct: 48 IFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 101
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1;
copper chaperone for superoxide dismutase, neuronal
adaptor, protein transport; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 90
Score = 60.9 bits (148), Expect = 2e-14
Identities = 12/55 (21%), Positives = 28/55 (50%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63
I + A G+ G R++ +N Q++ P+ ++V ++ N+ +H+ +P
Sbjct: 34 IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMP 88
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 96
Score = 60.8 bits (148), Expect = 3e-14
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
+ + V A L PGD+++ +NN+ DL + V +++ + L + VV
Sbjct: 33 LTVVAVTAGGSAHG-KLFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVV 86
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 61.2 bits (149), Expect = 3e-14
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
IFI V P S A AGL GD+V+AVN+ D+ +++ V++++ + + + V
Sbjct: 43 IFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTAR-EISMRV 95
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 61.1 bits (149), Expect = 3e-14
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 2 DEPMDT-IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
D DT + ++ + PA G L GD V+ +N ++ L +A+ V+ I+ LHL
Sbjct: 33 DVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHL 92
Query: 60 LV 61
++
Sbjct: 93 VI 94
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 60.8 bits (148), Expect = 3e-14
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
IF+ V S A AGL GD++ VN ++ V+++ +S LH++V
Sbjct: 38 IFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTSSS-RLHMMV 90
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 61.8 bits (150), Expect = 3e-14
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
I+I V P S A +GL GD+++ VN ++ ++ + E V+L+++S +L L V
Sbjct: 48 IYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSR-HLILTVK 101
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 62.8 bits (153), Expect = 4e-14
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
+ I VRP PA G + PGDR+++V+ + +AE + +++ LL+
Sbjct: 137 VVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLI 191
Score = 58.6 bits (142), Expect = 1e-12
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
+ ++R AA + L GD + AVN +A + E++ L++N + L V +
Sbjct: 35 PRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELP 94
Query: 67 D 67
Sbjct: 95 P 95
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 60.9 bits (148), Expect = 4e-14
Identities = 12/58 (20%), Positives = 22/58 (37%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65
I++ V S A AGL GD+++ N + + +I + +L
Sbjct: 44 IYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYNP 101
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL
conjugation, leucine-rich repeat, alternative splicing,
cytoplasm, circletail, coiled coil; 1.30A {Homo
sapiens}
Length = 97
Score = 60.4 bits (147), Expect = 5e-14
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
IFI V PAA AG+ GD+++ VN + + E V+ ++ + + + V
Sbjct: 36 IFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 89
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 61.0 bits (148), Expect = 6e-14
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
IF+ V SPAA GL GD+++ VNN ++ E V + + P + ++
Sbjct: 53 IFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTIL 107
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 60.9 bits (148), Expect = 6e-14
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
D +IF+ + P PAAA G + GD ++ +NNQ + + +I+ +P+ + L+
Sbjct: 47 DRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLV 106
Query: 61 VVPKENDLLQLTS 73
+ E+ + Q+ S
Sbjct: 107 FIRNEDAVNQMAS 119
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 59.2 bits (144), Expect = 9e-14
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
IF+K + S AA G + GD V+ +N ++ + LI+ S L ++V
Sbjct: 23 IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVV 77
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling
protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 59.6 bits (145), Expect = 1e-13
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65
IFIK + P SPA G L GDR++++N + + + V+ LI+ + + L + +
Sbjct: 39 IFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQTFD 97
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 60.0 bits (145), Expect = 1e-13
Identities = 11/70 (15%), Positives = 31/70 (44%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
++ + +++ V+ A+ GL GD ++ +NN+ L + + + L +
Sbjct: 40 EDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQPSLGLLVRT 99
Query: 62 VPKENDLLQL 71
P+ + ++
Sbjct: 100 YPELEEGVES 109
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 59.4 bits (144), Expect = 1e-13
Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA-YLHLLVV 62
+ + + P+ A+ AG GD +V++ L +EV++L+++ + + VV
Sbjct: 46 VQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVV 101
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 59.9 bits (145), Expect = 1e-13
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
I ++ SPA G L GDRV+A+N D + E QL+++S + +
Sbjct: 47 PLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLE 102
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA,
structural genomics, riken structural
genomics/proteomics initiative, unknown function; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 110
Score = 59.3 bits (144), Expect = 2e-13
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
++I+ + P SPAAA G L GDR++ VN ++ L Y V LI++ + LV
Sbjct: 38 LYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLV 92
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 60.6 bits (147), Expect = 2e-13
Identities = 13/57 (22%), Positives = 31/57 (54%)
Query: 6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
+ IF++ V+ +SPA+ GL GD+V+ +N + A + ++++ + + +
Sbjct: 27 NGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTI 83
Score = 55.2 bits (133), Expect = 2e-11
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 12 HVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63
+ S AA GL+ + +N Q + L +++ ++ S + + ++P
Sbjct: 113 SIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP 164
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 58.9 bits (143), Expect = 2e-13
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
I++ V P S A GL GD+++ VN++++A + +AE V+ ++ S L L V
Sbjct: 37 IYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSK-KLVLSVY 90
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell
junction, membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 58.6 bits (142), Expect = 2e-13
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
IF+K + S AA G + GD V+ +N ++ + LI+ S L ++V
Sbjct: 25 IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVV 79
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 60.5 bits (147), Expect = 2e-13
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
I++ + A G L GD+++AVN+ + D+ + + V ++N+ ++L V
Sbjct: 132 IYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKV 186
Score = 60.1 bits (146), Expect = 4e-13
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
IFI + P AA G L D ++ VN + ++ ++ V+ ++ + + + L V+
Sbjct: 37 IFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVM 92
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 58.5 bits (142), Expect = 2e-13
Identities = 14/61 (22%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
+ MD +++ + PA G + GD+++ +N ++ D+ +A ++LI++ + LL
Sbjct: 33 EYKMD-LYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLL 91
Query: 61 V 61
+
Sbjct: 92 L 92
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 59.1 bits (143), Expect = 3e-13
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA--YLHLLV 61
+ I H+ AA+ G L PGD +++V + + E ++L+QN L +
Sbjct: 49 PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKA 107
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 58.1 bits (141), Expect = 3e-13
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
D + I I V A G L GD+++ VN + + E + +++ +P + L
Sbjct: 26 DTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLT 85
Query: 61 V 61
+
Sbjct: 86 L 86
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 58.6 bits (142), Expect = 3e-13
Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
I I ++P S +G L PGD +++++ ++ E +L+ + + L
Sbjct: 38 LRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLE 97
Query: 61 VVPKENDLLQLTS 73
++P L
Sbjct: 98 ILPVPQSQRPLRP 110
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; structural genomi consortium, SGC,
ATP-binding, cell junction; 1.60A {Homo sapiens}
Length = 88
Score = 58.1 bits (141), Expect = 3e-13
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA--YLHLLVVPKE 65
+K + + GL GD +V VN + + L + +VV ++ SP + LLV +
Sbjct: 29 QRVKQIVD--SPRSRGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQT 86
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 59.0 bits (143), Expect = 4e-13
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65
I++K V P S A G + D++VAV+ I +VV++++N+ +HL +V ++
Sbjct: 48 IYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRK 106
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 60.2 bits (146), Expect = 4e-13
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
+ I ++ SPA G L GDRV+A+N D + E QL+++S +
Sbjct: 32 ETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVT 91
Query: 61 VV 62
+
Sbjct: 92 LE 93
Score = 59.8 bits (145), Expect = 5e-13
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
+ I ++ S A G L GD+++A++N + + VQ++Q + L + E+
Sbjct: 137 LVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKDED 196
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 58.6 bits (142), Expect = 4e-13
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
+I + P A G L+ G +V+ N + Y EV +I + V N
Sbjct: 51 AYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLN 110
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1,
HOST-virus interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 58.0 bits (141), Expect = 4e-13
Identities = 11/55 (20%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
IF+K + S G + GD+++AV+ + + V++++++ + L +
Sbjct: 35 IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 89
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 58.2 bits (141), Expect = 5e-13
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
D P++ I I V AA G L GD+++ VN + + + E + ++ +P + L+
Sbjct: 39 DTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLV 98
Query: 61 V 61
V
Sbjct: 99 V 99
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 57.8 bits (140), Expect = 5e-13
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
+ T I ++ PA +G L GDR+ A+N ++ LP A ++ + + +
Sbjct: 33 GSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVT 92
Query: 61 VV 62
+
Sbjct: 93 LS 94
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 61.1 bits (147), Expect = 6e-13
Identities = 13/59 (22%), Positives = 27/59 (45%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
I + A G+ G R++ +N Q++ + ++VQ + NS +H+ +P
Sbjct: 317 GIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAAM 375
Score = 52.7 bits (125), Expect = 5e-10
Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
+ T+ + ++ PAA +G L GD+++++N ++ LP A +I+ +
Sbjct: 228 GSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVK 287
Query: 61 VV 62
+
Sbjct: 288 LN 289
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding;
1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 57.3 bits (139), Expect = 7e-13
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
+EP D I I + A G + GDR++A+N+ ++ P +E + L+Q + + L
Sbjct: 26 EEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLK 85
Query: 61 VVPKE 65
+ +
Sbjct: 86 IKKQT 90
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 57.7 bits (140), Expect = 7e-13
Identities = 15/55 (27%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
I++K + P S AA G + P D+++ V++ + + ++VV++++N+ + LL+
Sbjct: 46 IYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLL 100
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 57.2 bits (139), Expect = 8e-13
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
+ I VRP PA G + PGDR+++V+ + +AE + +++ LL+
Sbjct: 34 VVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLI 88
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 57.8 bits (140), Expect = 8e-13
Identities = 10/62 (16%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
D I + V P+ A+ G + G+ V+++N +++ + + + +++ + +
Sbjct: 38 DLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAV 97
Query: 61 VV 62
+V
Sbjct: 98 IV 99
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 57.4 bits (139), Expect = 9e-13
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
IFI V P A G L G R++ VN Q++ L + E VQL+++ L +LV
Sbjct: 46 IFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVC 101
>3e17_A Tight junction protein ZO-2; domain swapping, alternative
promoter usage, alternative splicing, cell junction,
cell membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 56.9 bits (138), Expect = 9e-13
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
IF+K + A G L GD ++ +N ++ + +LI+ S L L+V
Sbjct: 23 IFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVV 77
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 57.4 bits (139), Expect = 9e-13
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
I++K V P A + G + GDRV+AVN ++ + + V+ ++N+ +HLL+
Sbjct: 44 IYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 98
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 56.8 bits (138), Expect = 1e-12
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
I++K V P A + G + GDRV+AVN ++ + + V+ ++N+ +HLL+
Sbjct: 35 IYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 89
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 57.4 bits (139), Expect = 1e-12
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
IFI + P AA L GDR+V + + + + + V L++N+ + + VV +
Sbjct: 55 IFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGD 114
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing
isoform B; GOPC PDZ domain, structural protein; NMR
{Homo sapiens}
Length = 103
Score = 57.0 bits (138), Expect = 1e-12
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 64
I I + P PA G L GD ++AVN + D + E V ++ + VV
Sbjct: 37 ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYV 94
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 57.0 bits (138), Expect = 1e-12
Identities = 11/55 (20%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
+++ + PA +G + GD ++ +N +T ++ ++ ++LI+N + L +
Sbjct: 51 LYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFL 105
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 57.1 bits (138), Expect = 1e-12
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
IFIK V SPA L GD+++ V+ + + ++E V+ I+N+ + +V
Sbjct: 52 IFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQ 107
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 56.6 bits (137), Expect = 2e-12
Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
IF+ + PAA G L DR++ VN + ++ + + V+ + + + + V+
Sbjct: 43 IFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVL 98
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus
musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 55.8 bits (135), Expect = 2e-12
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
I I + A L GD +++VN + ++ + E VQ ++ + + L V
Sbjct: 32 ILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 86
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 56.6 bits (137), Expect = 2e-12
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL-LVVPKE 65
I++K++ P A G L GDR++ VN + EVV L++++ + L+V ++
Sbjct: 60 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQ 119
Query: 66 ND 67
D
Sbjct: 120 ED 121
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 56.2 bits (136), Expect = 3e-12
Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
IF+K V A G + D++V V+ ++ + +++N+ + ++
Sbjct: 42 IFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVI 96
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 56.3 bits (136), Expect = 3e-12
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
I++ ++ + AA G L GD++++VN Q + +L + + V L +N+ + L V
Sbjct: 49 IYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 103
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 55.8 bits (135), Expect = 3e-12
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL- 59
DEP I I V A G L PGD +V V+ +A + V+ L+ ++ +
Sbjct: 30 DEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVN 89
Query: 60 LVVPKE 65
L V ++
Sbjct: 90 LTVRRK 95
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 55.8 bits (135), Expect = 3e-12
Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
+ ++ + P A G L GD ++ + + + +V Q+++N + +LV
Sbjct: 40 VVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPA 99
Query: 67 DLLQLTS 73
+ +TS
Sbjct: 100 GDISVTS 106
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 55.8 bits (135), Expect = 4e-12
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
IFIKHV SPA G L PGDR+V V+ + D + + V+ I+ + + +V
Sbjct: 41 IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 95
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 55.9 bits (135), Expect = 4e-12
Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV-PKE 65
I++ V P + G + GD ++ V+ + ++ +E V L++ + + + L + KE
Sbjct: 55 IYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVKE 114
Query: 66 NDLL 69
++
Sbjct: 115 GSIV 118
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 105
Score = 55.8 bits (135), Expect = 4e-12
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
IF+ + A AG L GDRV+++N + + + V L+ + + LL+
Sbjct: 40 IFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLL 94
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 55.8 bits (135), Expect = 4e-12
Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
IFI + PA +G L GD++++VN + + + + ++N+ + ++
Sbjct: 37 IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIA 91
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 113
Score = 55.8 bits (135), Expect = 4e-12
Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
IF+ + PA +G L GDR+++VN + + + + ++ + + ++
Sbjct: 41 IFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVA 95
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 55.0 bits (133), Expect = 5e-12
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
I+I + A G L GDR++AVNN + D+ + E V ++N+ ++L V
Sbjct: 35 IYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKV 89
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain,
scaffolding protein, membrane, sensory transduction,
vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A
2qku_A
Length = 96
Score = 55.0 bits (133), Expect = 6e-12
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
I + L GD + N + LP+ L + + + + V
Sbjct: 33 CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGKVSMEVT 88
>2i04_A Membrane-associated guanylate kinase, WW and PDZ
domain-containing protein 1; PDZ, E6 binding, tumor
suppressor, peptide binding protein; 2.15A {Mus
musculus}
Length = 85
Score = 54.6 bits (132), Expect = 7e-12
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA--YLH 58
DEP + + IK + PAA G + GD +V+VN+ + +A+VV++ Q+ P +
Sbjct: 21 DEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVD 80
Query: 59 LLV 61
L +
Sbjct: 81 LEL 83
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 55.5 bits (134), Expect = 7e-12
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
D P+ + + V A G +V GD ++A+N + + D AE +Q +
Sbjct: 39 DSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDW 98
Query: 61 V 61
+
Sbjct: 99 I 99
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 55.0 bits (133), Expect = 7e-12
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
I++ ++ + AA G L GD++++VN Q + +L + + V L +N+ + L V
Sbjct: 39 IYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 93
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 55.1 bits (133), Expect = 7e-12
Identities = 12/74 (16%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV---- 62
IF+K V A G + D +V V+ ++ + + +++N+ + ++
Sbjct: 37 IFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERP 96
Query: 63 PKENDLLQLTSDLI 76
+++++ QL +
Sbjct: 97 GEQSEVAQLIQQTL 110
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 55.5 bits (134), Expect = 7e-12
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA--YLH 58
DEP + + +K V P PAA G + GD +V +N + +A+VV+L Q+ P ++
Sbjct: 40 DEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVN 99
Query: 59 LLV 61
L++
Sbjct: 100 LVL 102
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 54.6 bits (132), Expect = 8e-12
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
+FI + AA G L DRV+A+N + Q+IQ S ++L +
Sbjct: 31 VFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTI 85
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 55.8 bits (134), Expect = 8e-12
Identities = 13/58 (22%), Positives = 28/58 (48%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65
I++ V PA AGL GD+++ VN + + + + + + + L+V ++
Sbjct: 66 IYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ 123
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 56.8 bits (137), Expect = 8e-12
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
I + L GD + N + LP+ L + + + + V
Sbjct: 138 CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVT 193
Score = 43.3 bits (102), Expect = 8e-07
Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Query: 1 MDEPMDT-IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTI--ADLPYAEVVQLIQNSPAY 56
+ + T I HV P AA L D + +N I + +V QL +
Sbjct: 39 KNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEK 98
Query: 57 LHLLVVPKEND 67
L V + +
Sbjct: 99 AVTLTVFRADP 109
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 56.5 bits (136), Expect = 9e-12
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
+FI H+ A + GL GD +V +N +I+ + EV+ LI+ + + V
Sbjct: 112 LFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRTEKT-VSIKV 164
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 55.0 bits (133), Expect = 9e-12
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL-LVVPKE 65
I++K++ P A G L GDR++ VN +A EVV L++++ + L+V ++
Sbjct: 41 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQ 100
Query: 66 ND 67
+
Sbjct: 101 EE 102
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 54.7 bits (132), Expect = 9e-12
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
I I+ + A +G L+PGDR+V+VN + + AE V++++ P L L +
Sbjct: 46 IVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGI 101
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 55.2 bits (133), Expect = 1e-11
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
IFIKHV SPA G L PGDR+V V+ + D + + V+ I+ + + +V
Sbjct: 61 IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 115
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 54.7 bits (132), Expect = 1e-11
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
I++ + A G L GD+++AVN+ ++ ++ + E V ++N+ +++L V K
Sbjct: 35 IYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVA-KPT 93
Query: 67 DLLQLTSDLIFH 78
+ H
Sbjct: 94 SMYISRHHHHHH 105
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide;
peptide binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 54.7 bits (132), Expect = 1e-11
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
I + L GD + N + LP+ L + + + + V
Sbjct: 27 CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVT 82
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 54.8 bits (132), Expect = 1e-11
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
I I + P PA G L GD ++AVN + D + E V ++ + VV
Sbjct: 55 ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV 110
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex,
peptide binding protein; 1.54A {Rattus norvegicus}
SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 54.7 bits (132), Expect = 1e-11
Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
IFI + PA +G L GD++++VN + + + + ++N+ + ++
Sbjct: 40 IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIA 94
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 54.3 bits (131), Expect = 2e-11
Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
I++K V A+ G L GD+++AVN Q++ + + E V +++ + + L+V+
Sbjct: 55 IYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVL 110
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 54.5 bits (131), Expect = 2e-11
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 8 IFIKHVRPHSPAAAA--GLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
+ + V P +PA L GD+VV +N + IA+ + +VV I+ S ++
Sbjct: 43 VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELM 99
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 93
Score = 53.8 bits (130), Expect = 2e-11
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
I+I V P A G L GD++++VN ++ + + V+L++ + + L+V
Sbjct: 32 IYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVR 87
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A
{Homo sapiens}
Length = 95
Score = 53.6 bits (129), Expect = 2e-11
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 8 IFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL---LVVP 63
FIK ++ + + GD + ++N + I + +V + ++ L+ P
Sbjct: 30 AFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEP 89
Query: 64 KE 65
K+
Sbjct: 90 KK 91
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 54.4 bits (131), Expect = 2e-11
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIA-DLPYAEVVQLIQNSPAYLHLLVV 62
IF+K V+P S A L D+++A+N+ + ++ + + + L+Q + L L+V
Sbjct: 56 IFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVA 112
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 53.1 bits (128), Expect = 3e-11
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 1 MDEPMDTIFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
DE I + + A +GL+ GD + VN + D E++Q++ S +
Sbjct: 23 KDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITF 82
Query: 60 LVVPKEND 67
++P +
Sbjct: 83 KIIPGSKE 90
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens}
PDB: 2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 53.5 bits (129), Expect = 3e-11
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
I I V PA L DRV VN ++ ++ +A VQ ++ S + +
Sbjct: 41 IVISDVLKGGPAEG-QLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITI 93
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 53.6 bits (129), Expect = 4e-11
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL-LVVPKE 65
FI V+ S A G L PGD V+ N + + + EV +I S + LVV +
Sbjct: 67 AFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRS 126
Query: 66 N 66
Sbjct: 127 G 127
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 53.3 bits (128), Expect = 4e-11
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 8 IFIKHVRPHSPAAAA--GLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
+ + V P +PA L GD+VV +N + IA+ + +VV I+ S ++
Sbjct: 45 VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELM 101
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1qav_B
Length = 112
Score = 53.3 bits (128), Expect = 4e-11
Identities = 12/56 (21%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
+ I + A +G + GD ++AVN++ + DL Y +++++ + H++++
Sbjct: 28 VIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLI 83
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 100
Score = 52.7 bits (127), Expect = 4e-11
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
+ + + AA + + GD +V +N + E + LI+ S L L+V
Sbjct: 37 LTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKGSFRILKLIV 90
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 53.1 bits (128), Expect = 5e-11
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
I++ + A G L GDR++ VNN ++ ++ + E V +++N+ ++L V
Sbjct: 56 IYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKV 110
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal
transduction, structural genom structural genomics
consortium, SGC, signaling protein; 1.85A {Homo
sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A
1iu0_A 1iu2_A
Length = 102
Score = 52.7 bits (127), Expect = 5e-11
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
IFI + P AA G L D V+ VN ++++ ++ V+ ++ + + L+V
Sbjct: 36 IFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVV 90
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 53.3 bits (128), Expect = 5e-11
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA--YLH 58
DEP + + IK + PAA G + GD +V+VN+ + +A+VV++ Q+ P +
Sbjct: 39 DEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVD 98
Query: 59 LLV 61
L +
Sbjct: 99 LEL 101
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 52.7 bits (127), Expect = 6e-11
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
I++K V A G L GD++++V+ +++ L +L+ + + + L V
Sbjct: 40 IYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEV 94
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 52.8 bits (127), Expect = 6e-11
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
I I V P PA L DRVV VN + D+ ++ VQ ++ S ++V
Sbjct: 48 IVISDVLPGGPADG-LLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVV 100
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 52.3 bits (126), Expect = 6e-11
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL- 59
+EP + I+I H+ P A G L GD +++V+ + + VVQL+Q + H+
Sbjct: 23 NEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVN 82
Query: 60 LVV 62
L V
Sbjct: 83 LTV 85
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 52.0 bits (125), Expect = 9e-11
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
+ I ++ A G L G ++ VN T+ + E ++I +
Sbjct: 28 NTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRD 87
Query: 61 VV 62
+
Sbjct: 88 YI 89
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 52.5 bits (126), Expect = 9e-11
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
++I V ++PAA G + GD + VN ++I EV ++IQ + +
Sbjct: 52 LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 106
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 52.5 bits (126), Expect = 1e-10
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
E + IFI + P A + GL+ D V+ VN ++ +V ++ + L +
Sbjct: 61 LEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIIT 120
Query: 61 VVP 63
V P
Sbjct: 121 VRP 123
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 52.1 bits (125), Expect = 1e-10
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 3 EPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
MD++ I + A +G L GD V+ +N I EV L+ + L ++
Sbjct: 45 NEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVL 104
Query: 62 VPKEN 66
+P
Sbjct: 105 IPSSG 109
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane
protein, PDZ domain, hydrolase, inner membrane,
membrane, metal-binding; HET: MLY MSE; 0.98A
{Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 51.3 bits (123), Expect = 1e-10
Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63
P++ + +++V+P+S A+ AGL GDR+V V+ Q + + V L++++P L +
Sbjct: 3 PIEPV-LENVQPNSAASXAGLQAGDRIVXVDGQPLTQ--WVTFVMLVRDNPGXSLALEIE 59
Query: 64 KENDLLQLT 72
++ L LT
Sbjct: 60 RQGSPLSLT 68
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 52.5 bits (126), Expect = 1e-10
Identities = 10/67 (14%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
+ I + + + + + PGD ++ + + L E +I+ P +V+ +++
Sbjct: 59 LTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKS 118
Query: 67 DLLQLTS 73
+ T+
Sbjct: 119 LQSKETT 125
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 51.6 bits (124), Expect = 1e-10
Identities = 7/61 (11%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 6 DTIFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 64
+ + + G + GD ++ +N + + ++ + ++ + + L V+P
Sbjct: 36 QSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKVIPN 95
Query: 65 E 65
+
Sbjct: 96 Q 96
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 53.0 bits (127), Expect = 2e-10
Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
IF+K V A G + D +V V+ ++ + + +++N+ + ++
Sbjct: 113 IFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMI 167
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 54.1 bits (129), Expect = 2e-10
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
IFI + P AA G L D ++ VN + ++ ++ V+ ++ + + + L V+ ++
Sbjct: 91 IFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP 150
Score = 48.7 bits (115), Expect = 2e-08
Identities = 12/61 (19%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 8 IFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
IFI + PA +G + GD++++VN + + + + ++N+ + ++ K
Sbjct: 333 IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE 392
Query: 67 D 67
+
Sbjct: 393 E 393
Score = 37.6 bits (86), Expect = 1e-04
Identities = 12/61 (19%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 1 MDEPMDTIFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
++I++ + A G + GD+++AVN+ + D+ + + V ++N+ ++L
Sbjct: 179 HIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYL 238
Query: 60 L 60
Sbjct: 239 K 239
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 51.7 bits (124), Expect = 2e-10
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
++I V ++PAA G + GD + VN ++I EV ++IQ + +
Sbjct: 47 LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 101
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS,
nitric oxide synthase, oxidoreductase; NMR {Rattus
norvegicus} SCOP: b.36.1.1
Length = 127
Score = 51.8 bits (124), Expect = 2e-10
Identities = 12/56 (21%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
+ I + A +G + GD ++AVN++ + DL Y +++++ + H++++
Sbjct: 35 VIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLI 90
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 50.7 bits (122), Expect = 2e-10
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
+F+ + A A G L+ GD+++ VN + + + V L++ S + L V
Sbjct: 31 VFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEV 85
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 51.3 bits (123), Expect = 3e-10
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS 53
++I V P G L PGD++V++N +++ + + E +I +
Sbjct: 43 VYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRA 89
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 50.4 bits (120), Expect = 4e-10
Identities = 11/62 (17%), Positives = 27/62 (43%)
Query: 2 DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
++ + +++ V+ A+ GL GD ++ +NN+ L + + + L +
Sbjct: 31 EDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQPSLGLLVRT 90
Query: 62 VP 63
P
Sbjct: 91 YP 92
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling
protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 50.1 bits (120), Expect = 5e-10
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
IF+ V+P PA+ L PGD+++ N + ++ + + V L++ + L++
Sbjct: 45 IFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELII 97
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 49.3 bits (118), Expect = 1e-09
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
IF+ V+P PA+ L PGD+++ N + ++ + + V L++ + L++
Sbjct: 37 IFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELII 89
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics, KIAA0705 protein; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 96
Score = 49.3 bits (118), Expect = 1e-09
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA--YLHLLV 61
+K + GL GD +V +N Q + +L + EVV ++++ P L++
Sbjct: 34 QRVKQILD--IQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLII 87
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 49.8 bits (119), Expect = 1e-09
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL------L 60
IFIK + A G L D+++AVN +T+ E ++ ++ S + L
Sbjct: 57 IFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQL 116
Query: 61 VVPKEND 67
V+ + +
Sbjct: 117 VILRRSG 123
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 49.3 bits (118), Expect = 1e-09
Identities = 12/56 (21%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIAD-LPYAEVVQLIQNSPAYLHLLV 61
IF++ ++ S A G L D+++A+N Q + + + + + ++Q + + L++
Sbjct: 51 IFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVI 106
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 47.3 bits (113), Expect = 5e-09
Identities = 7/59 (11%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 6 DTIFIKHVRPHSPAA-AAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63
+ + + L GD + +N ++A+ ++ ++++ + +VP
Sbjct: 25 NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVP 83
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A*
1mc7_A
Length = 108
Score = 47.0 bits (112), Expect = 1e-08
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 2 DEPMDT-IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQN---SPAY 56
+E D I+I + AA G + PGD ++ VN+ ++ + V+++++ P
Sbjct: 28 NERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGP 87
Query: 57 LHLLVV 62
+ L V
Sbjct: 88 IVLTVA 93
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 3; structural genomics consortium, SGC, PDZ
domain, signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 46.4 bits (110), Expect = 2e-08
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 17 SPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLV 61
GL GD + + +Q + +L + +VV++++ P A + LL+
Sbjct: 43 DSQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLI 89
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 46.4 bits (110), Expect = 2e-08
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 2 DEPMDT-IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
D+ D I+I + P+S AA G + GDR++ +N + + A + L L
Sbjct: 43 DDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVAL-LTSEENKNFSL 101
Query: 60 LVV 62
L+
Sbjct: 102 LIA 104
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 47.3 bits (113), Expect = 4e-08
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
+ + +V+ +PAA GL GD ++ N Q + ++ AE+ +++ + P+ L L +
Sbjct: 385 VVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLALNI 436
Score = 40.0 bits (94), Expect = 2e-05
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTI---ADLPY 43
F+ V P+S AA AG+ GD + ++N + I A L
Sbjct: 289 FVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRA 326
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM,
tight junction, cell adhesio; 2.50A {Homo sapiens} PDB:
3tsw_A 3lh5_A
Length = 391
Score = 47.5 bits (112), Expect = 4e-08
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 64
IF+ V SPAA GL GD+++ VNN ++ E V + + P + ++ +
Sbjct: 33 IFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQ 89
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 47.0 bits (111), Expect = 5e-08
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
I I + A L GD +++VN + ++ + E VQ ++ + + L
Sbjct: 105 ILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVL 157
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 46.8 bits (110), Expect = 6e-08
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
IF+ V SPAA GL GD+++ VNN ++ E V + + P + ++ ++
Sbjct: 25 IFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKK 83
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 46.7 bits (111), Expect = 6e-08
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 1 MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA 55
++ I +V P SPA AGL G ++ +N I +E++Q
Sbjct: 85 DNDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKVESELLQGSTRQLQ 139
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs
large homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 44.4 bits (105), Expect = 8e-08
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 6 DTIFIKHVRPHSPAA-AAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63
+ I + A L GD + VN Q + P + +L++N+ + L ++
Sbjct: 29 GELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGSDP-RALQELLRNASGSVILKILS 86
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 46.5 bits (111), Expect = 8e-08
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 10 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
I V SPAA AGL D ++ VN + + AE+ +++ PA + L +
Sbjct: 367 IDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKVLAAKPAIIALQI 416
Score = 39.9 bits (94), Expect = 1e-05
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTI---ADLPY 43
F+ V P S +A AG+ GD + ++N + + A+L
Sbjct: 266 FVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRS 303
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 45.8 bits (109), Expect = 1e-07
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 10 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
+ +S AG+ PGD +++ N + + D+ + + Q L + V
Sbjct: 390 VVGASENSAGWRAGIRPGDIIISANKKPVTDV--KSLQTIAQEKKKELLVQV 439
Score = 42.7 bits (101), Expect = 1e-06
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 1 MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTI---ADLPY 43
E + V P+SPA AGL GD + +N+ I +
Sbjct: 277 YPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKT 322
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria,
peptid module, hydrolase; 2.75A {Homo sapiens} SCOP:
b.36.1.4
Length = 113
Score = 42.3 bits (100), Expect = 8e-07
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN 52
+ I V SPA AGL PGD ++A+ Q + + +V + ++
Sbjct: 37 VLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA--EDVYEAVRT 79
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 42.1 bits (98), Expect = 1e-06
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 7 TIFIKHVRPH--SPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
T+ +K V SP + PGDR++ +N + L EV I+ + L LL+
Sbjct: 45 TVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLI 101
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown
function; 1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 42.6 bits (99), Expect = 2e-06
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
IF+ V+P PA+ L PGD+++ N + ++ + + V L++ + L++V
Sbjct: 26 IFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIV 79
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane,
cell membrane, membrane, metal-binding,
metalloprotease, transmembrane; 1.67A {Escherichia coli
k-12} PDB: 2zpl_A
Length = 95
Score = 41.1 bits (96), Expect = 2e-06
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 10 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIAD 40
+ + +S AA A + PG + AV+ D
Sbjct: 6 VGEIAANSIAAEAQIAPGTELKAVDGIETPD 36
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 41.1 bits (97), Expect = 2e-06
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS 53
I+++ V P+SP+ G+ GD +V VN + + D +E+ + +
Sbjct: 37 IYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDS--SELQEAVLTE 80
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 42.2 bits (100), Expect = 2e-06
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 17 SPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQ 51
PA AG GD +V V+ + + +V L+Q
Sbjct: 110 GPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQ 144
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 41.5 bits (98), Expect = 4e-06
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIAD 40
I V AA AG+ G V V+++ I
Sbjct: 245 KIVEVVAGGAAANAGVPKGVVVTKVDDRPINS 276
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 41.4 bits (98), Expect = 5e-06
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIAD 40
I + V P PAA AG+ D +++V+N+
Sbjct: 246 IVVNEVSPDGPAANAGIQVNDLIISVDNKPAIS 278
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 40.3 bits (95), Expect = 1e-05
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTI---ADLPYA 44
+ I V SPA AGL PGD ++A+ Q + D+ A
Sbjct: 258 VLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEA 297
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 40.3 bits (95), Expect = 1e-05
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTI---ADLPYA 44
+I V P +PA A GL D ++++N Q++ D+
Sbjct: 256 AYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDV 295
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type
2 secretion system, protein transport, membrane
protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 38.0 bits (88), Expect = 3e-05
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 10 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 54
+ + + GL GD VA+N + D + L Q+
Sbjct: 41 VSPGKDPVLFESIGLQDGDMAVALNGLDLTD--PNVMNTLFQSMN 83
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 39.3 bits (91), Expect = 3e-05
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 1 MDEPMDTIFIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
+ + V +SPAA AGL P D ++ + +++ + P L L
Sbjct: 107 DGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTVMNESEDLFSLIETHEAKP--LKL 164
Query: 60 LVVPKEND 67
V + D
Sbjct: 165 YVYNTDTD 172
Score = 37.4 bits (86), Expect = 1e-04
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 10 IKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQNSP 54
+ V+ +SP AGL P D +V++N + + L++ +
Sbjct: 20 VLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDT-LKDLLKANV 64
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 39.1 bits (92), Expect = 3e-05
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTI---ADLPY 43
F+ V P S +A AG+ GD + ++N + + A+L
Sbjct: 266 FVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRS 303
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 37.3 bits (87), Expect = 5e-05
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA 55
+++ V P+ PAA L GDR+ A++ Q I ++V ++ A
Sbjct: 7 VYVMSVLPNMPAAG-RLEAGDRIAAIDGQPINT--SEQIVSYVREKQA 51
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type
2 secretion system, protein transport, membrane
protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 37.1 bits (86), Expect = 5e-05
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 10 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA 55
+ + + GL GD VA+N + D + L Q+
Sbjct: 23 VSPGKDPVLFESIGLQDGDMAVALNGLDLTD--PNVMNTLFQSMNE 66
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 38.5 bits (88), Expect = 5e-05
Identities = 8/48 (16%), Positives = 21/48 (43%)
Query: 1 MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQ 48
+ + +V A AGL GD+++A+++ + +++
Sbjct: 491 YKASPQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQATEQSVKRILE 538
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 36.1 bits (84), Expect = 1e-04
Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA 55
I+ V + PA + GD++++ + + +++ I + A
Sbjct: 3 IYASSVVENMPAKG-KIEVGDKIISADGKNYQS--AEKLIDYISSKKA 47
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 35.6 bits (82), Expect = 3e-04
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA 55
+ I V P SPA+ L PG + ++N ++L ++
Sbjct: 27 VQIDSVVPGSPASKV-LTPGLVIESINGMPTSNL--TTYSAALKTISV 71
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes}
PDB: 2kjk_A 3i1e_A
Length = 100
Score = 33.8 bits (78), Expect = 0.001
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA 55
+++ V+ PAA L GD + ++ E + I +
Sbjct: 9 VYVMSVKDDVPAADV-LHAGDLITEIDGNAFKS--SQEFIDYIHSKKV 53
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 34.1 bits (79), Expect = 0.001
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 54
+ ++ V+ + PA L D + V+++ IA ++ + N
Sbjct: 59 VIVRSVQSNMPANG-HLEKYDVITKVDDKEIAS--STDLQSALYNHS 102
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1
protein; PDZ domain, structural genomics consortium,
SGC, hydrolase R; 2.29A {Homo sapiens}
Length = 101
Score = 33.7 bits (76), Expect = 0.001
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 1 MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQ---NSPAYL 57
++E + +K V+ S A AGL G ++ ++N + P++EV ++ S L
Sbjct: 34 IEEKNKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPL 93
Query: 58 HLLVVPK 64
LLV K
Sbjct: 94 RLLVATK 100
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor,
hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Length = 348
Score = 32.6 bits (75), Expect = 0.007
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 14/49 (28%)
Query: 8 IFIKHVRPHSPAAAAGLVP-----------GDRVVAVNNQTI---ADLP 42
+ + P PA AGL GD + +VN + +DL
Sbjct: 253 VLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGSDLY 301
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 27.5 bits (60), Expect = 0.43
Identities = 5/43 (11%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 13 VRPHSPAAAAGL-VPGDRVVAVNNQTIADLPYAEVVQLIQNSP 54
SP G+ G + ++ +T+ + + +++
Sbjct: 763 EGEKSPIFEYGIDPTGYLIEDIDGETVGAG--SNIYRVLSEKA 803
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside,
2-deoxystreptamine, dehydroquinate synthase, lyase;
HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB:
2d2x_A*
Length = 368
Score = 26.9 bits (60), Expect = 0.60
Identities = 6/56 (10%), Positives = 15/56 (26%), Gaps = 1/56 (1%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63
S + D+ + +++ + D A +H+L
Sbjct: 15 FAFGEHVLESVESYIPRDEFDQYIMISDSGVPDS-IVHYAAEYFGKLAPVHILRFQ 69
>3okf_A 3-dehydroquinate synthase; structural genomics, center for
structural genomics of infec diseases, csgid, NAD,
lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar
eltor}
Length = 390
Score = 26.1 bits (58), Expect = 1.1
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 19 AAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63
A L +VV V N T+A L ++ L+ + LL +P
Sbjct: 54 PALLSLSAKQKVVIVTNHTVAPLYAPAIISLLDHIGCQHALLELP 98
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic
amino acid biosynthesis, DHQS, O form J, domain
movement, cyclase, lyase; HET: NAD; 1.70A {Emericella
nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A
1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Length = 393
Score = 25.8 bits (57), Expect = 1.4
Identities = 6/45 (13%), Positives = 12/45 (26%), Gaps = 3/45 (6%)
Query: 6 DTIFIKH--VRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQ 48
++I R + V V + I + Y +
Sbjct: 13 ESIIADFGLWRNYVAKDLISDCSSTTYVLVTDTNIGSI-YTPSFE 56
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 25.3 bits (55), Expect = 2.5
Identities = 6/34 (17%), Positives = 8/34 (23%), Gaps = 4/34 (11%)
Query: 3 EPMDTIFIKHVRPHSP----AAAAGLVPGDRVVA 32
D +FI A L +V
Sbjct: 107 PDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVL 140
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural
genomics, joint center structural genomics, JCSG; HET:
MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Length = 201
Score = 24.9 bits (54), Expect = 2.8
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 19 AAAAGLVPGDRVVAV 33
AA +G +P + VVAV
Sbjct: 150 AADSGAIPIEEVVAV 164
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH
dihydroxybenzoate synthetase, isochroismatase...;
adenylate-forming enzymes, ANL superfamily; HET: SVS
PNS; 3.10A {Escherichia coli}
Length = 617
Score = 25.3 bits (56), Expect = 2.8
Identities = 9/54 (16%), Positives = 14/54 (25%), Gaps = 24/54 (44%)
Query: 2 DEPMDTIFIKHVRPHSPA------------------------AAAGLVPGDRVV 31
D P+ I +H S A G+ PG+ +
Sbjct: 26 DLPLTDILTRHAASDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETAL 79
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 24.9 bits (55), Expect = 2.9
Identities = 6/39 (15%), Positives = 8/39 (20%), Gaps = 16/39 (41%)
Query: 19 AAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYL 57
A A + R VAV +
Sbjct: 60 ATAGRIGGAGR-VAV---------------WATPAMETG 82
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 24.8 bits (55), Expect = 3.2
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 21 AAGLVPGDRVVA 32
G+V G R A
Sbjct: 63 VVGVVEGRRYAA 74
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 24.5 bits (52), Expect = 3.9
Identities = 5/33 (15%), Positives = 14/33 (42%), Gaps = 12/33 (36%)
Query: 10 IKHV----RPHSPAAAAGLVPGDRVVAVNNQTI 38
+K + + ++ +A P +A+ T+
Sbjct: 22 LKKLQASLKLYADDSA----PA---LAI-KATM 46
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi
center for structural genomics, JCSG, protein structure
INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus
273-4}
Length = 379
Score = 24.7 bits (54), Expect = 4.3
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 19 AAAAGLVPGDRVVAVNN 35
A A L + + + N
Sbjct: 66 AVARQLTIDEDCLIIRN 82
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE);
structural genomics, PSI-2, protein structure
initiative; 2.80A {Cupriavidus metallidurans}
Length = 359
Score = 24.7 bits (54), Expect = 4.5
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 22 AGLVPGDRVVAVNNQTIAD 40
+GL GDRVV + D
Sbjct: 332 SGLSAGDRVVVKEGVLLND 350
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte
tuberculosis, nicotinamide adenine dinucleotide
(NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis}
PDB: 3qbd_A
Length = 368
Score = 24.5 bits (54), Expect = 4.9
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 20 AAAGLVPGDRVVAVNNQTIADLPYAE-VVQLIQNSPAYLHLLVVP 63
L +V V+ +A AE + + + H + +P
Sbjct: 36 LEDLLADRHKVAVVHQPGLA--ETAEEIRKRLAGKGVDAHRIEIP 78
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 24.2 bits (52), Expect = 6.0
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 10/52 (19%)
Query: 6 DTIFIKHVRPHSPAAAAGLVPGD-------RVVAVNNQTIADLPYAEVVQLI 50
+ + R VP D ++A+N +A E +Q +
Sbjct: 1781 SLVEVVFYRG---MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV 1829
>1b9l_A Protein (epimerase); isomerase; 2.90A {Escherichia coli} SCOP:
d.96.1.3
Length = 120
Score = 23.8 bits (52), Expect = 6.2
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 1 MDEPMDTIFIKHVR 14
M +P I IK++R
Sbjct: 1 MAQPAAIIRIKNLR 14
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid
biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm,
lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Length = 343
Score = 24.2 bits (53), Expect = 6.7
Identities = 3/53 (5%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
+F+ + + + +++ +A L +++ ++ + ++
Sbjct: 15 VFLGELPEI--------KLKQKALIISDSIVAGLHLPYLLERLKALEVRVCVI 59
>1efv_A Electron transfer flavoprotein; electron transport, glutaric
acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens}
SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Length = 315
Score = 24.0 bits (53), Expect = 6.9
Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 4/47 (8%)
Query: 19 AAAAGLVPG-DRVVAVNNQTIADL---PYAEVVQLIQNSPAYLHLLV 61
A V G +V+ + L ++ Q Y H+
Sbjct: 46 AQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICA 92
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.0 bits (51), Expect = 7.1
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 40 DLPYAEVVQ-LIQNSPAYLHLLVVPKENDLLQLT----SDLIFHDFY 81
D Y +V ++ P L+ K DLL++ + IF + +
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
>2ps1_A Orotate phosphoribosyltransferase 1; alpha beta, oprtase-OA-PRPP
complex; HET: ORO PRP; 1.75A {Saccharomyces cerevisiae}
PDB: 2pry_A* 2prz_A*
Length = 226
Score = 24.1 bits (52), Expect = 7.3
Identities = 5/39 (12%), Positives = 17/39 (43%)
Query: 24 LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
+ R++ +++ A E ++I N+ + ++
Sbjct: 122 ALENKRILIIDDVMTAGTAINEAFEIISNAKGQVVGSII 160
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification,
iron-sulfur cluster, RNA processing; 1.95A {Escherichia
coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Length = 433
Score = 24.0 bits (53), Expect = 7.4
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 11/48 (22%)
Query: 7 TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 54
T+FI GL+P + + A+VV+ + +SP
Sbjct: 38 TLFIP-----------GLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding,
tRNA methyltransferase, S-adenosyl-L-methionine, iron,
4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi}
PDB: 2vs1_A*
Length = 425
Score = 24.0 bits (53), Expect = 7.5
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 23 GLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 54
PGD ++ + + A +L+++SP
Sbjct: 43 FSAPGDEIIVERVERVKKRRVASQWKLVRSSP 74
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle
regulation; 1.70A {Streptococcus mutans}
Length = 173
Score = 23.6 bits (51), Expect = 8.9
Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 23/68 (33%)
Query: 1 MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIA--DL-PYAEVVQLIQNSPAYL 57
D +F K V P+ V + +A D+ +
Sbjct: 32 RGSMNDCLFCKIVAGDIPS---------SKVYEDEDVLAFLDISQATKG----------- 71
Query: 58 HLLVVPKE 65
H LV+PKE
Sbjct: 72 HTLVIPKE 79
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 23.7 bits (52), Expect = 9.8
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 16/41 (39%)
Query: 20 AAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
G+ GDR VA+ L QN + L+
Sbjct: 49 LRDGVHTGDR-VAI---------------LSQNCSEMIELI 73
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.406
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,237,359
Number of extensions: 62474
Number of successful extensions: 570
Number of sequences better than 10.0: 1
Number of HSP's gapped: 461
Number of HSP's successfully gapped: 248
Length of query: 81
Length of database: 6,701,793
Length adjustment: 50
Effective length of query: 31
Effective length of database: 5,305,743
Effective search space: 164478033
Effective search space used: 164478033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)