BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5714
         (163 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SS3|A Chain A, Crystal Structure Of Mouse Glutaminase C, Ligand-Free Form
 pdb|3SS3|B Chain B, Crystal Structure Of Mouse Glutaminase C, Ligand-Free Form
 pdb|3SS3|C Chain C, Crystal Structure Of Mouse Glutaminase C, Ligand-Free Form
 pdb|3SS3|D Chain D, Crystal Structure Of Mouse Glutaminase C, Ligand-Free Form
 pdb|3SS4|A Chain A, Crystal Structure Of Mouse Glutaminase C, Phosphate-Bound
           Form
 pdb|3SS4|B Chain B, Crystal Structure Of Mouse Glutaminase C, Phosphate-Bound
           Form
 pdb|3SS4|C Chain C, Crystal Structure Of Mouse Glutaminase C, Phosphate-Bound
           Form
 pdb|3SS4|D Chain D, Crystal Structure Of Mouse Glutaminase C, Phosphate-Bound
           Form
 pdb|3SS5|A Chain A, Crystal Structure Of Mouse Glutaminase C,
           L-Glutamate-Bound Form
 pdb|3SS5|B Chain B, Crystal Structure Of Mouse Glutaminase C,
           L-Glutamate-Bound Form
 pdb|3SS5|C Chain C, Crystal Structure Of Mouse Glutaminase C,
           L-Glutamate-Bound Form
 pdb|3SS5|D Chain D, Crystal Structure Of Mouse Glutaminase C,
           L-Glutamate-Bound Form
          Length = 479

 Score =  105 bits (261), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 44/72 (61%), Positives = 56/72 (77%)

Query: 17  FQVGLPAKSGVSGSMLVVVPNTMGIALFSPPLDALGNSCRGVQFCEELVKTFNFHKYDNL 76
           F VGLPAKSGV+G +L+VVPN MG+  +SPPLD +GNS +G+ FC +LV   NFH YDNL
Sbjct: 355 FHVGLPAKSGVAGGILLVVPNVMGMMCWSPPLDKMGNSVKGIHFCHDLVSLCNFHNYDNL 414

Query: 77  RYAANKIDPRKH 88
           R+ A K+DPR+ 
Sbjct: 415 RHFAKKLDPRRE 426


>pdb|3UNW|A Chain A, Crystal Structure Of Human Gac In Complex With Glutamate
 pdb|3UNW|B Chain B, Crystal Structure Of Human Gac In Complex With Glutamate
 pdb|3UNW|C Chain C, Crystal Structure Of Human Gac In Complex With Glutamate
 pdb|3UNW|D Chain D, Crystal Structure Of Human Gac In Complex With Glutamate
 pdb|3UO9|A Chain A, Crystal Structure Of Human Gac In Complex With Glutamate
           And Bptes
 pdb|3UO9|B Chain B, Crystal Structure Of Human Gac In Complex With Glutamate
           And Bptes
 pdb|3UO9|C Chain C, Crystal Structure Of Human Gac In Complex With Glutamate
           And Bptes
 pdb|3UO9|D Chain D, Crystal Structure Of Human Gac In Complex With Glutamate
           And Bptes
          Length = 534

 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 44/72 (61%), Positives = 56/72 (77%)

Query: 17  FQVGLPAKSGVSGSMLVVVPNTMGIALFSPPLDALGNSCRGVQFCEELVKTFNFHKYDNL 76
           F VGLPAKSGV+G +L+VVPN MG+  +SPPLD +GNS +G+ FC +LV   NFH YDNL
Sbjct: 404 FHVGLPAKSGVAGGILLVVPNVMGMMCWSPPLDKMGNSVKGIHFCHDLVSLCNFHNYDNL 463

Query: 77  RYAANKIDPRKH 88
           R+ A K+DPR+ 
Sbjct: 464 RHFAKKLDPRRE 475


>pdb|3CZD|A Chain A, Crystal Structure Of Human Glutaminase In Complex With
           L-Glutamate
 pdb|3VOY|A Chain A, Crystal Structure Of Human Glutaminase In Apo Form
 pdb|3VOZ|A Chain A, Crystal Structure Of Human Glutaminase In Complex With
           Bptes
 pdb|3VP0|A Chain A, Crystal Structure Of Human Glutaminase In Complex With
           L-Glutamine
 pdb|3VP1|A Chain A, Crystal Structure Of Human Glutaminase In Complex With
           L-Glutamate And Bptes
 pdb|3VP2|A Chain A, Crystal Structure Of Human Glutaminase In Complex With
           Inhibitor 2
 pdb|3VP3|A Chain A, Crystal Structure Of Human Glutaminase In Complex With
           Inhibitor 3
          Length = 315

 Score = 89.7 bits (221), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 38/60 (63%), Positives = 47/60 (78%)

Query: 17  FQVGLPAKSGVSGSMLVVVPNTMGIALFSPPLDALGNSCRGVQFCEELVKTFNFHKYDNL 76
           F VGLPAKSGV+G +L+VVPN MG+  +SPPLD +GNS +G+ FC +LV   NFH YDNL
Sbjct: 256 FHVGLPAKSGVAGGILLVVPNVMGMMCWSPPLDKMGNSVKGIHFCHDLVSLCNFHNYDNL 315


>pdb|3VP4|A Chain A, Crystal Structure Of Human Glutaminase In Complex With
           Inhibitor 4
          Length = 316

 Score = 89.7 bits (221), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 38/60 (63%), Positives = 47/60 (78%)

Query: 17  FQVGLPAKSGVSGSMLVVVPNTMGIALFSPPLDALGNSCRGVQFCEELVKTFNFHKYDNL 76
           F VGLPAKSGV+G +L+VVPN MG+  +SPPLD +GNS +G+ FC +LV   NFH YDNL
Sbjct: 257 FHVGLPAKSGVAGGILLVVPNVMGMMCWSPPLDKMGNSVKGIHFCHDLVSLCNFHNYDNL 316


>pdb|3IF5|A Chain A, Crystal Structure Analysis Of Mglu
 pdb|3IH8|A Chain A, Crystal Structure Analysis Of Mglu In Its Native Form
 pdb|3IH8|B Chain B, Crystal Structure Analysis Of Mglu In Its Native Form
 pdb|3IH9|A Chain A, Crystal Structure Analysis Of Mglu In Its Tris Form
 pdb|3IH9|B Chain B, Crystal Structure Analysis Of Mglu In Its Tris Form
 pdb|3IHA|A Chain A, Crystal Structure Analysis Of Mglu In Its Glutamate Form
 pdb|3IHA|B Chain B, Crystal Structure Analysis Of Mglu In Its Glutamate Form
 pdb|3IHB|A Chain A, Crystal Structure Analysis Of Mglu In Its Tris And
           Glutamate Form
 pdb|3IHB|B Chain B, Crystal Structure Analysis Of Mglu In Its Tris And
           Glutamate Form
 pdb|3AGD|A Chain A, Crystal Structure Of Mglu In Its Native Form In The
           Presence Of 4.3m Nacl
 pdb|3AGD|B Chain B, Crystal Structure Of Mglu In Its Native Form In The
           Presence Of 4.3m Nacl
 pdb|3AGE|A Chain A, Crystal Structure Of Mglu In Its L-Glutamate Binding Form
           In The Presence Of 4.3m Nacl
 pdb|3AGE|B Chain B, Crystal Structure Of Mglu In Its L-Glutamate Binding Form
           In The Presence Of 4.3m Nacl
          Length = 456

 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 45/78 (57%), Gaps = 8/78 (10%)

Query: 1   MSSSSQYQ---KWDILTPIFQVGLPAKSGVSGSMLVVVPNTMGIALFSPPLDALGNSCRG 57
           M+SS  Y    +W     +  VG+PAKSGV+G +L  +P  +GI +FSP LD +GNS RG
Sbjct: 237 MTSSGMYDAAGQW-----LADVGIPAKSGVAGGVLGALPGRVGIGVFSPRLDEVGNSARG 291

Query: 58  VQFCEELVKTFNFHKYDN 75
           V  C  L + F  H  D 
Sbjct: 292 VLACRRLSEDFRLHLMDG 309


>pdb|1U60|A Chain A, Mcsg Apc5046 Probable Glutaminase Ybas
 pdb|1U60|B Chain B, Mcsg Apc5046 Probable Glutaminase Ybas
 pdb|1U60|C Chain C, Mcsg Apc5046 Probable Glutaminase Ybas
 pdb|1U60|D Chain D, Mcsg Apc5046 Probable Glutaminase Ybas
          Length = 310

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 37/57 (64%)

Query: 17  FQVGLPAKSGVSGSMLVVVPNTMGIALFSPPLDALGNSCRGVQFCEELVKTFNFHKY 73
           ++VGLP KSGV G +L VVP  MGIA FSPPLD  GNS RG +    + K   ++ +
Sbjct: 252 YRVGLPGKSGVGGGILAVVPGVMGIAAFSPPLDEDGNSVRGQKMVASVAKQLGYNVF 308


>pdb|2PBY|A Chain A, Probable Glutaminase From Geobacillus Kaustophilus Hta426
 pdb|2PBY|B Chain B, Probable Glutaminase From Geobacillus Kaustophilus Hta426
 pdb|2PBY|C Chain C, Probable Glutaminase From Geobacillus Kaustophilus Hta426
 pdb|2PBY|D Chain D, Probable Glutaminase From Geobacillus Kaustophilus Hta426
          Length = 308

 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 35/54 (64%)

Query: 17  FQVGLPAKSGVSGSMLVVVPNTMGIALFSPPLDALGNSCRGVQFCEELVKTFNF 70
            +VG+PAKSGVSG +L  VP   GI +F P LD  GNS  GV+  E L KT++ 
Sbjct: 252 IKVGIPAKSGVSGGILAAVPGRCGIGVFGPALDDKGNSLTGVKLLERLSKTYSL 305


>pdb|3AGF|A Chain A, Crystal Structure Of Bacillus Glutaminase In The Presence
           Of 4.3m Nacl
 pdb|3AGF|B Chain B, Crystal Structure Of Bacillus Glutaminase In The Presence
           Of 4.3m Nacl
          Length = 327

 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 10/62 (16%)

Query: 19  VGLPAKSGVSGSMLVVVP----------NTMGIALFSPPLDALGNSCRGVQFCEELVKTF 68
           VG+PAKSGVSG ++ +VP          +  GI ++ P +D  GNS  G    + + + +
Sbjct: 263 VGVPAKSGVSGGIMALVPPSARREQPFQSGCGIGIYGPAIDEYGNSLTGGMLLKHMAQEW 322

Query: 69  NF 70
             
Sbjct: 323 EL 324


>pdb|2OSU|A Chain A, Probable Glutaminase From Bacillus Subtilis Complexed With
           6-diazo-5-oxo-l-norleucine
 pdb|2OSU|B Chain B, Probable Glutaminase From Bacillus Subtilis Complexed With
           6-diazo-5-oxo-l-norleucine
 pdb|3BRM|A Chain A, Crystal Structure Of The Covalent Complex Between The
           Bacillus Subtilis Glutaminase Ybgj And
           5-Oxo-L-Norleucine Formed By Reaction Of The Protein
           With 6-Diazo-5-Oxo-L- Norleucine
 pdb|3BRM|B Chain B, Crystal Structure Of The Covalent Complex Between The
           Bacillus Subtilis Glutaminase Ybgj And
           5-Oxo-L-Norleucine Formed By Reaction Of The Protein
           With 6-Diazo-5-Oxo-L- Norleucine
          Length = 330

 Score = 39.3 bits (90), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 10/49 (20%)

Query: 19  VGLPAKSGVSGSMLVVVP----------NTMGIALFSPPLDALGNSCRG 57
           VG+PAKSGVSG +  +VP          +  GI ++ P +D  GNS  G
Sbjct: 266 VGVPAKSGVSGGIXALVPPSARREQPFQSGCGIGIYGPAIDEYGNSLTG 314


>pdb|1MKI|A Chain A, Crystal Structure Of Bacillus Subtilis Probable
           Glutaminase, Apc1040
 pdb|1MKI|B Chain B, Crystal Structure Of Bacillus Subtilis Probable
           Glutaminase, Apc1040
          Length = 330

 Score = 38.9 bits (89), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 10/49 (20%)

Query: 19  VGLPAKSGVSGSMLVVVP----------NTMGIALFSPPLDALGNSCRG 57
           VG+PAKSGVSG +  +VP          +  GI ++ P +D  GNS  G
Sbjct: 266 VGVPAKSGVSGGIXALVPPSARREQPFQSGCGIGIYGPAIDEYGNSLTG 314


>pdb|3RF7|A Chain A, Crystal Structure Of An Iron-Containing Alcohol
           Dehydrogenase (Sden_2133) From Shewanella Denitrificans
           Os-217 At 2.12 A Resolution
          Length = 375

 Score = 27.7 bits (60), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)

Query: 3   SSSQYQKWDILT--PIFQVGLPAKSG 26
           SSS+YQ WD++    +  +G+P  SG
Sbjct: 137 SSSEYQGWDLIKNPAVHHIGIPTVSG 162


>pdb|3NWC|A Chain A, Crystal Structure Of The Pyrococcus Furiosus Smc Protein
           Hinge Domain
 pdb|3NWC|B Chain B, Crystal Structure Of The Pyrococcus Furiosus Smc Protein
           Hinge Domain
          Length = 189

 Score = 27.3 bits (59), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 50  ALGNSCRGVQFCEELV-----KTFNFHKYDNLRYA-ANKIDPRKHKYSSIGLSIVTLL 101
           ALGN    V   +ELV     K    HK   L +   NKI P KH  SS+GL  V ++
Sbjct: 58  ALGNRADNVVVEDELVAEKAIKYLKEHKLGRLTFLPLNKIKP-KHVDSSVGLPAVDVI 114


>pdb|3KA8|A Chain A, Frog M-Ferritin, Eqh Mutant, With Cobalt
          Length = 176

 Score = 26.2 bits (56), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 46  PPLDALGNSCRGVQFCEELVKTFNFHKYDNLRYAANKIDPR 86
           P  D  GN+   +Q   +L KT N    D  + A +K+DP 
Sbjct: 85  PERDEWGNTLEAMQAALQLEKTVNQALLDLHKLATDKVDPH 125


>pdb|3SHX|A Chain A, Frog M-Ferritin With Magnesium, L134p Mutant
          Length = 176

 Score = 26.2 bits (56), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 46  PPLDALGNSCRGVQFCEELVKTFNFHKYDNLRYAANKIDPR 86
           P  D  GN+   +Q   +L KT N    D  + A +K+DP 
Sbjct: 85  PERDEWGNTLEAMQAALQLEKTVNQALLDLHKLATDKVDPH 125


>pdb|1MFR|A Chain A, Crystal Structure Of M Ferritin
 pdb|1MFR|B Chain B, Crystal Structure Of M Ferritin
 pdb|1MFR|C Chain C, Crystal Structure Of M Ferritin
 pdb|1MFR|D Chain D, Crystal Structure Of M Ferritin
 pdb|1MFR|E Chain E, Crystal Structure Of M Ferritin
 pdb|1MFR|F Chain F, Crystal Structure Of M Ferritin
 pdb|1MFR|G Chain G, Crystal Structure Of M Ferritin
 pdb|1MFR|H Chain H, Crystal Structure Of M Ferritin
 pdb|1MFR|I Chain I, Crystal Structure Of M Ferritin
 pdb|1MFR|J Chain J, Crystal Structure Of M Ferritin
 pdb|1MFR|K Chain K, Crystal Structure Of M Ferritin
 pdb|1MFR|L Chain L, Crystal Structure Of M Ferritin
 pdb|1MFR|M Chain M, Crystal Structure Of M Ferritin
 pdb|1MFR|N Chain N, Crystal Structure Of M Ferritin
 pdb|1MFR|O Chain O, Crystal Structure Of M Ferritin
 pdb|1MFR|P Chain P, Crystal Structure Of M Ferritin
 pdb|1MFR|Q Chain Q, Crystal Structure Of M Ferritin
 pdb|1MFR|R Chain R, Crystal Structure Of M Ferritin
 pdb|1MFR|S Chain S, Crystal Structure Of M Ferritin
 pdb|1MFR|T Chain T, Crystal Structure Of M Ferritin
 pdb|1MFR|U Chain U, Crystal Structure Of M Ferritin
 pdb|1MFR|V Chain V, Crystal Structure Of M Ferritin
 pdb|1MFR|W Chain W, Crystal Structure Of M Ferritin
 pdb|1MFR|X Chain X, Crystal Structure Of M Ferritin
 pdb|3KA3|A Chain A, Frog M-Ferritin With Magnesium
 pdb|3KA4|A Chain A, Frog M-Ferritin With Cobalt
 pdb|3RBC|A Chain A, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|B Chain B, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|C Chain C, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|D Chain D, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|E Chain E, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|F Chain F, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|G Chain G, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|H Chain H, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|I Chain I, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|J Chain J, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|K Chain K, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|L Chain L, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|M Chain M, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|N Chain N, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|O Chain O, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|P Chain P, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|Q Chain Q, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|R Chain R, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|S Chain S, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|T Chain T, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|U Chain U, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|V Chain V, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|W Chain W, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|X Chain X, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RE7|A Chain A, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|B Chain B, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|C Chain C, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|D Chain D, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|E Chain E, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|F Chain F, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|G Chain G, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|H Chain H, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|I Chain I, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|J Chain J, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|K Chain K, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|L Chain L, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|M Chain M, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|N Chain N, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|O Chain O, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|P Chain P, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|Q Chain Q, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|R Chain R, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|S Chain S, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|T Chain T, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|U Chain U, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|V Chain V, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|W Chain W, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|X Chain X, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RGD|A Chain A, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|B Chain B, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|C Chain C, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|D Chain D, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|E Chain E, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|F Chain F, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|G Chain G, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|H Chain H, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|I Chain I, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|J Chain J, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|K Chain K, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|L Chain L, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|M Chain M, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|N Chain N, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|O Chain O, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|P Chain P, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|Q Chain Q, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|R Chain R, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|S Chain S, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|T Chain T, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|U Chain U, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|V Chain V, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|W Chain W, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|X Chain X, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|4DAS|A Chain A, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|B Chain B, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|C Chain C, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|D Chain D, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|E Chain E, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|F Chain F, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|G Chain G, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|H Chain H, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|I Chain I, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|J Chain J, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|K Chain K, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|L Chain L, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|M Chain M, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|N Chain N, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|O Chain O, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|P Chain P, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|Q Chain Q, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|R Chain R, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|S Chain S, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|T Chain T, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|U Chain U, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|V Chain V, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|X Chain X, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|W Chain W, Crystal Structure Of Bullfrog M Ferritin
          Length = 176

 Score = 26.2 bits (56), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 46  PPLDALGNSCRGVQFCEELVKTFNFHKYDNLRYAANKIDPR 86
           P  D  GN+   +Q   +L KT N    D  + A +K+DP 
Sbjct: 85  PERDEWGNTLEAMQAALQLEKTVNQALLDLHKLATDKVDPH 125


>pdb|3KA9|A Chain A, Frog M-Ferritin, Eeh Mutant, With Cobalt
          Length = 176

 Score = 26.2 bits (56), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 46  PPLDALGNSCRGVQFCEELVKTFNFHKYDNLRYAANKIDPR 86
           P  D  GN+   +Q   +L KT N    D  + A +K+DP 
Sbjct: 85  PERDEWGNTLEAMQAALQLEKTVNQALLDLHKLATDKVDPH 125


>pdb|3SE1|A Chain A, Frog M-Ferritin With Magnesium, R72d Mutant
          Length = 176

 Score = 26.2 bits (56), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 46  PPLDALGNSCRGVQFCEELVKTFNFHKYDNLRYAANKIDPR 86
           P  D  GN+   +Q   +L KT N    D  + A +K+DP 
Sbjct: 85  PERDEWGNTLEAMQAALQLEKTVNQALLDLHKLATDKVDPH 125


>pdb|3KA6|A Chain A, Frog M-Ferritin, Eed Mutant, With Cobalt
          Length = 176

 Score = 26.2 bits (56), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 46  PPLDALGNSCRGVQFCEELVKTFNFHKYDNLRYAANKIDPR 86
           P  D  GN+   +Q   +L KT N    D  + A +K+DP 
Sbjct: 85  PERDEWGNTLEAMQAALQLEKTVNQALLDLHKLATDKVDPH 125


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,893,091
Number of Sequences: 62578
Number of extensions: 134398
Number of successful extensions: 426
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 410
Number of HSP's gapped (non-prelim): 21
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)