RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5714
(163 letters)
>gnl|CDD|191140 pfam04960, Glutaminase, Glutaminase. This family of enzymes
deaminates glutamine to glutamate EC:3.5.1.2.
Length = 286
Score = 98.9 bits (247), Expect = 8e-26
Identities = 29/57 (50%), Positives = 37/57 (64%)
Query: 17 FQVGLPAKSGVSGSMLVVVPNTMGIALFSPPLDALGNSCRGVQFCEELVKTFNFHKY 73
++VGLPAKSGV G +L VVP MGIA++SP LD GNS GV E+L + +
Sbjct: 230 YRVGLPAKSGVGGGILAVVPGVMGIAVWSPALDEAGNSVAGVAALEKLSQRLGLSIF 286
>gnl|CDD|234362 TIGR03814, Gln_ase, glutaminase A. This family describes the
enzyme glutaminase, from a larger family that includes
serine-dependent beta-lactamases and penicillin-binding
proteins. Many bacteria have two isozymes. This model is
based on selected known glutaminases and their homologs
within prokaryotes, with the exclusion of highly-derived
(long branch) and architecturally varied homologs, so as
to achieve conservative assignments. A sharp drop in
scores occurs below 250, and cutoffs are set
accordingly. The enzyme converts glutamine to glutamate,
with the release of ammonia. Members tend to be
described as glutaminase A (glsA), where B (glsB) is
unknown and may not be homologous (as in Rhizobium
etli). Some species have two isozymes that may both be
designated A (GlsA1 and GlsA2) [Energy metabolism, Amino
acids and amines].
Length = 300
Score = 76.4 bits (189), Expect = 2e-17
Identities = 29/50 (58%), Positives = 36/50 (72%)
Query: 17 FQVGLPAKSGVSGSMLVVVPNTMGIALFSPPLDALGNSCRGVQFCEELVK 66
++VGLPAKSGV G +L VVP MGIA++SP LDA GNS G + E L +
Sbjct: 244 YRVGLPAKSGVGGGILAVVPGKMGIAVWSPALDAAGNSVAGQKALELLSE 293
>gnl|CDD|234880 PRK00971, PRK00971, glutaminase; Provisional.
Length = 307
Score = 76.3 bits (189), Expect = 3e-17
Identities = 28/50 (56%), Positives = 34/50 (68%)
Query: 17 FQVGLPAKSGVSGSMLVVVPNTMGIALFSPPLDALGNSCRGVQFCEELVK 66
++VGLPAKSGV G +L VVP M IA++SP LDA GNS G E L +
Sbjct: 251 YRVGLPAKSGVGGGILAVVPGEMAIAVWSPELDAKGNSLAGTAALERLSQ 300
>gnl|CDD|224977 COG2066, GlsA, Glutaminase [Amino acid transport and metabolism].
Length = 309
Score = 75.7 bits (187), Expect = 5e-17
Identities = 27/48 (56%), Positives = 35/48 (72%)
Query: 17 FQVGLPAKSGVSGSMLVVVPNTMGIALFSPPLDALGNSCRGVQFCEEL 64
++VGLPAKSGV G ++ VVP MGIA++SP LD GNS G+ E+L
Sbjct: 253 YRVGLPAKSGVGGGIMAVVPGEMGIAVWSPALDEAGNSVAGIAALEQL 300
>gnl|CDD|237073 PRK12356, PRK12356, glutaminase; Reviewed.
Length = 319
Score = 71.5 bits (176), Expect = 2e-15
Identities = 28/41 (68%), Positives = 31/41 (75%)
Query: 17 FQVGLPAKSGVSGSMLVVVPNTMGIALFSPPLDALGNSCRG 57
+ VGLP KSGV G +L VVP MGIA FSPPLD+ GNS RG
Sbjct: 255 YTVGLPGKSGVGGGILAVVPGKMGIAAFSPPLDSAGNSVRG 295
>gnl|CDD|237074 PRK12357, PRK12357, glutaminase; Reviewed.
Length = 326
Score = 51.6 bits (124), Expect = 2e-08
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 10/58 (17%)
Query: 19 VGLPAKSGVSGSMLVVVP----------NTMGIALFSPPLDALGNSCRGVQFCEELVK 66
VGLPAKSGVSG ++ +VP + GI ++ P +D GNS G+ + + K
Sbjct: 262 VGLPAKSGVSGGIMTLVPPKSRKDLPFQDGCGIGIYGPAIDEYGNSLPGIMLLKHIAK 319
>gnl|CDD|173943 cd08184, Fe-ADH3, Iron-containing alcohol dehydrogenases-like.
Iron-containing alcohol dehydrogenase-like. Proteins of
this family have not been characterized. Their specific
function is unknown. The protein structure represents a
dehydroquinate synthase-like fold and is belonged to the
iron-containing alcohol dehydrogenase-like superfamily.
They are distinct from other alcohol dehydrogenases
which contain different protein domains. Alcohol
dehydrogenase catalyzes the reduction of acetaldehyde to
alcohol with NADP as cofactor. Its activity requires
iron or zinc ions. Members of this family are mainly
found in bacteria.
Length = 347
Score = 29.7 bits (67), Expect = 0.59
Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 3 SSSQYQKWDIL-TP-IFQVGLPAKSG 26
S+ YQ WD++ P ++++G+P SG
Sbjct: 109 SAEDYQGWDLVKNPAVYKIGIPTLSG 134
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 29.1 bits (65), Expect = 1.1
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 95 LSIVTLLFNAAAGNISALRRWGKTPLDEAKTFKRDRIIQILEGSLSSTSSAE 146
+ +V +L A + + L + GKTPL+ A+ ++Q+L
Sbjct: 128 VQVVRVLLEFGA-DPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELG 178
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 28.1 bits (63), Expect = 1.1
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 88 HKYSSIG-LSIVTLLFNAAAGNISALRRWGKTPLDEAKTFKRDRIIQIL 135
H + G L +V LL A +++A + G+TPL A ++++L
Sbjct: 78 HLAARNGNLDVVKLLLKHGA-DVNARDKDGRTPLHLAAKNGHLEVVKLL 125
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the
multidrug and toxic compound extrusion (MATE) proteins,
similar to Methanocaldococcus jannaschii MJ0709. The
integral membrane proteins from the MATE family are
involved in exporting metabolites across the cell
membrane and are responsible for multidrug resistance
(MDR) in many bacteria and animals. A number of family
members are involved in the synthesis of peptidoglycan
components in bacteria.
Length = 441
Score = 28.3 bits (64), Expect = 1.9
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 9 KWDILTPIFQVGLPAK---------SGVSGSMLVVVPNTMGIALFS 45
I+ I +VG+PA + +LV+V T G+A+++
Sbjct: 225 DKKIVKDILKVGIPASLEQLIMSVLMIILNLILVIVAGTDGVAVYT 270
>gnl|CDD|224134 COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell
envelope biogenesis, outer membrane].
Length = 239
Score = 27.7 bits (62), Expect = 2.4
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 96 SIVTLLFNAAAGNISALRRWGKTPLDEAKTFK--RDRIIQI 134
SI+ L A + RR ++EA K RI++I
Sbjct: 112 SILERLLEAPGEGLIVDRRPRYVGVEEATKVKDEGGRIVEI 152
>gnl|CDD|131735 TIGR02688, TIGR02688, TIGR02688 family protein. Members of this
family are uncharacterized proteins sporadically
distributed in bacteria and archaea, about 470 amino
acids in length. Several members of this family appear
in public databases with annotation as ATP-dependent
protease La, despite the lack of similarity to families
TIGR00763 (ATP-dependent protease La) or pfam02190
(ATP-dependent protease La (LON) domain). This protein
is repeatedly found downstream of another
uncharacterized protein of about 880 amino acids in
length, described by model TIGR02687 [Hypothetical
proteins, Conserved].
Length = 449
Score = 27.8 bits (62), Expect = 3.2
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 78 YAANKIDPRKHKYSSIGLSIVTLLFNAAAGNISALRRWGKTPLDEAKTFKR---DRIIQI 134
Y N + P S +++ L +N + I + RW DE T K +I I
Sbjct: 224 YIYNNLSPYVILISGGTITVAKLFYNISTRQIGLVGRWDVVAFDEVATLKFAKPKELIGI 283
Query: 135 LEGSLSSTS 143
L+ + S S
Sbjct: 284 LKNYMESGS 292
>gnl|CDD|171440 PRK12365, PRK12365, ribonucleotide-diphosphate reductase subunit
alpha; Provisional.
Length = 1046
Score = 27.6 bits (61), Expect = 3.8
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 126 FKRDRIIQILEGSLSSTSSAEDS----EDESLQLPQITSK 161
F ++RI Q LE + T S ED ED + IT +
Sbjct: 21 FNQNRIFQALEAAFRDTRSLEDHSPLPEDLESSIRSITHQ 60
>gnl|CDD|226148 COG3621, COG3621, Patatin [General function prediction only].
Length = 394
Score = 27.6 bits (61), Expect = 3.8
Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 10/76 (13%)
Query: 42 ALFSPPLD------ALGNSCRGVQF----CEELVKTFNFHKYDNLRYAANKIDPRKHKYS 91
ALFSP L C+ +V ++ + N + + R +Y+
Sbjct: 101 ALFSPKYSPQPLIKLLKFVCKDYTLKDLIGRVVVPGYDLNNQKNPLFTFSTHHARPSRYN 160
Query: 92 SIGLSIVTLLFNAAAG 107
+ LS + L AA
Sbjct: 161 NYKLSDIILASTAAPT 176
>gnl|CDD|163190 TIGR03234, OH-pyruv-isom, hydroxypyruvate isomerase. This enzyme
interconverts tartronate semi-aldehyde (TSA, aka
2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E.
coli enzyme has been characterized and found to be
specific for TSA, contain no cofactors, and have a
rather high Km for hydroxypyruvate of 12.5 mM. The gene
is ofter found in association with glyoxalate
carboligase (which produces TSA), but has been shown to
have no effect on growth on glyoxalate when knocked out.
This is consistent with the fact that the gene for
tartronate semialdehyde reductase (glxR) is also
associated and may have primary responsibility for the
catabolism of TSA.
Length = 254
Score = 27.3 bits (61), Expect = 4.1
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 41 IALFSPPLDAL-GNSCRGVQFCEELVKTFNFHKYDNLRYAANKID 84
AL P ++ L G GV EE T +NLRYAA+ +D
Sbjct: 94 RALGCPQVNCLAGKRPAGVS-PEEARATL----VENLRYAADALD 133
>gnl|CDD|180917 PRK07279, dnaE, DNA polymerase III DnaE; Reviewed.
Length = 1034
Score = 27.3 bits (61), Expect = 4.9
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 5 SQYQKWDILTPIFQVGL 21
YQK + L P+ ++GL
Sbjct: 784 ENYQKKEFLEPLIKIGL 800
>gnl|CDD|185216 PRK15316, PRK15316, RatA-like protein; Provisional.
Length = 2683
Score = 27.3 bits (60), Expect = 5.0
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 110 SALRRWGKTP----LDEAKTFKRDRIIQILEGSLSSTSSAEDSEDESL 153
+ WG P + FKR +++ L + T+ AED+ED +
Sbjct: 1140 DKAKMWGHMPETVTAADGTVFKRPLLLKELSSTSGRTAIAEDNEDWAQ 1187
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 26.6 bits (59), Expect = 7.0
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Query: 48 LDALGNSCRGVQFCEELVKTF 68
+D G + R QFC+EL+
Sbjct: 271 VDEFGYNMR--QFCQELIDHL 289
>gnl|CDD|143567 cd07458, CRD_FZ1_like, Cysteine-rich Wnt-binding domain (CRD) of
receptors similar to frizzled 1. The cysteine-rich
domain (CRD) is an essential extracellular portion of
the frizzled 1 (Fz1), frizzled 2 (Fz2), and frizzled 7
(Fz7) receptors, and similar proteins. This domain is
required for binding Wnt proteins, which play
fundamental roles in many aspects of early development,
such as cell and tissue polarity, neural synapse
formation, and the regulation of proliferation. Fz
proteins serve as Wnt receptors for multiple signal
transduction pathways, including both beta-catenin
dependent and -independent cellular signaling, as well
as the planar cell polarity pathway and Ca(2+)
modulating signaling pathway. The CRD domain is well
conserved in metazoans - 10 frizzled proteins have been
identified in mammals, 4 in Drosophila and 3 in
Caenorhabditis elegans. Very little is known about the
mechanism by which CRD domains interact with their
ligands. The domain contains 10 conserved cysteines.
Length = 119
Score = 25.8 bits (57), Expect = 7.8
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 46 PPLDALGNSCRGVQFCEELVKTFNFHKYDNLR 77
PP +L S R CE L+ F F ++L
Sbjct: 72 PPCRSLCESARQG--CEALMNKFGFQWPESLD 101
>gnl|CDD|236932 PRK11564, PRK11564, stationary phase inducible protein CsiE;
Provisional.
Length = 426
Score = 26.1 bits (58), Expect = 8.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 28 SGSMLVVVPNTMGIALFSPPL 48
G L++ P + LFSPPL
Sbjct: 384 RGVALIITPYATPLPLFSPPL 404
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.131 0.375
Gapped
Lambda K H
0.267 0.0627 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,018,431
Number of extensions: 717680
Number of successful extensions: 607
Number of sequences better than 10.0: 1
Number of HSP's gapped: 605
Number of HSP's successfully gapped: 28
Length of query: 163
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 74
Effective length of database: 6,990,096
Effective search space: 517267104
Effective search space used: 517267104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.2 bits)