RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5714
(163 letters)
>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase
inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB:
3unw_A* 3ss3_A 3ss4_A 3ss5_A*
Length = 534
Score = 114 bits (286), Expect = 2e-30
Identities = 48/111 (43%), Positives = 64/111 (57%), Gaps = 2/111 (1%)
Query: 16 IFQVGLPAKSGVSGSMLVVVPNTMGIALFSPPLDALGNSCRGVQFCEELVKTFNFHKYDN 75
F VGLPAKSGV+G +L+VVPN MG+ +SPPLD +GNS +G+ FC +LV NFH YDN
Sbjct: 403 AFHVGLPAKSGVAGGILLVVPNVMGMMCWSPPLDKMGNSVKGIHFCHDLVSLCNFHNYDN 462
Query: 76 LRYAANKIDPRKHKYSSIGLSIVTLLFNAAAGNISALRRWGKTPLDEAKTF 126
LR+ A K+DPR+ S L + + AL+ +
Sbjct: 463 LRHFAKKLDPRREGGDQ-RHSFGPLDY-ESLQQELALKETVWKKVSPESNE 511
>3agd_A Salt-tolerant glutaminase; glutaminase super family, hydrolase;
2.20A {Micrococcus luteus} PDB: 3age_A* 3if5_A 3ih8_A
3ih9_A 3iha_A* 3ihb_A 2dfw_A
Length = 456
Score = 109 bits (272), Expect = 7e-29
Identities = 39/156 (25%), Positives = 61/156 (39%), Gaps = 9/156 (5%)
Query: 1 MSSSSQYQ---KWDILTPIFQVGLPAKSGVSGSMLVVVPNTMGIALFSPPLDALGNSCRG 57
M+SS Y +W + VG+PAKSGV+G +L +P +GI +FSP LD +GNS RG
Sbjct: 237 MTSSGMYDAAGQW-----LADVGIPAKSGVAGGVLGALPGRVGIGVFSPRLDEVGNSARG 291
Query: 58 VQFCEELVKTFNFHKYDNLRYAANKI-DPRKHKYSSIGLSIVTLLFNAAAGNISALRRWG 116
V C L + F H D + + + F A + AL
Sbjct: 292 VLACRRLSEDFRLHLMDGDSLGGTAVRFVEREGDRVFLHLQGVIRFGGAEAVLDALTDLR 351
Query: 117 KTPLDEAKTFKRDRIIQILEGSLSSTSSAEDSEDES 152
+ + E + + + + +
Sbjct: 352 TGAEKPGTGWDAAVYPRWQEAAADRAALSAATGGGA 387
>3voy_A Glutaminase kidney isoform, mitochondrial; hydrolase; 2.20A {Homo
sapiens} PDB: 3czd_A 3voz_A* 3vp0_A* 3vp1_A* 3vp2_A
3vp3_A 3vp4_A
Length = 315
Score = 92.0 bits (228), Expect = 4e-23
Identities = 38/60 (63%), Positives = 47/60 (78%)
Query: 17 FQVGLPAKSGVSGSMLVVVPNTMGIALFSPPLDALGNSCRGVQFCEELVKTFNFHKYDNL 76
F VGLPAKSGV+G +L+VVPN MG+ +SPPLD +GNS +G+ FC +LV NFH YDNL
Sbjct: 256 FHVGLPAKSGVAGGILLVVPNVMGMMCWSPPLDKMGNSVKGIHFCHDLVSLCNFHNYDNL 315
>1u60_A Probable glutaminase YBAS; structural genomics, APC5046, PSI,
protein structure initiat midwest center for structural
genomics, MCSG; 1.61A {Escherichia coli} SCOP: e.3.1.2
Length = 310
Score = 86.9 bits (215), Expect = 3e-21
Identities = 32/77 (41%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 1 MSSSSQYQ---KWDILTPIFQVGLPAKSGVSGSMLVVVPNTMGIALFSPPLDALGNSCRG 57
M Y W ++VGLP KSGV G +L VVP MGIA FSPPLD GNS RG
Sbjct: 238 MMMEGLYGRSGDW-----AYRVGLPGKSGVGGGILAVVPGVMGIAAFSPPLDEDGNSVRG 292
Query: 58 VQFCEELVKTFNFHKYD 74
+ + K ++ +
Sbjct: 293 QKMVASVAKQLGYNVFK 309
>2pby_A Glutaminase; secsg, riken, structural genomics, PSI, protein
structure initiative, riken structural
genomics/proteomics initiative, RSGI; 2.07A {Geobacillus
kaustophilus}
Length = 308
Score = 84.3 bits (208), Expect = 3e-20
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 1 MSSSSQYQ---KWDILTPIFQVGLPAKSGVSGSMLVVVPNTMGIALFSPPLDALGNSCRG 57
M + Y ++ +VG+PAKSGVSG +L VP GI +F P LD GNS G
Sbjct: 238 MVTCGMYNSSGEF-----AIKVGIPAKSGVSGGILAAVPGRCGIGVFGPALDDKGNSLTG 292
Query: 58 VQFCEELVKTFNFH 71
V+ E L KT++
Sbjct: 293 VKLLERLSKTYSLS 306
>1mki_A Probable glutaminase YBGJ; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG, hydrolase; HET: SEP; 2.00A {Bacillus
subtilis} SCOP: e.3.1.2 PDB: 2osu_A* 3brm_A* 3agf_A
Length = 330
Score = 75.4 bits (185), Expect = 4e-17
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
Query: 17 FQVGLPAKSGVSGSMLVVVP----------NTMGIALFSPPLDALGNSCRGVQFCEELVK 66
VG+PAKSGVSG ++ +VP + GI ++ P +D GNS G + + +
Sbjct: 264 AFVGVPAKSGVSGGIMALVPPSARREQPFQSGCGIGIYGPAIDEYGNSLTGGMLLKHMAQ 323
Query: 67 TFNFH 71
+
Sbjct: 324 EWELS 328
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 1e-04
Identities = 24/129 (18%), Positives = 37/129 (28%), Gaps = 45/129 (34%)
Query: 28 SGSMLVVVPNTMGIALFSPPLDALGNSCRGV-----QFCEELVKTFNFHKYDNLRYAANK 82
+ M+ + P + + +AL V E N
Sbjct: 1806 NYGMIAINPGRVAASF---SQEALQYVVERVGKRTGWLVE----------------IVN- 1845
Query: 83 IDPRKHKYSSIGLSIVTLLFNAAAGNISALRRWGKTPLDEAKTFKRDRIIQILEGSLSST 142
Y+ V AAG++ AL L+ K K I I+E L +
Sbjct: 1846 -------YNVENQQYV------AAGDLRALDTVTNV-LNFIKLQK----IDIIE--LQKS 1885
Query: 143 SSAEDSEDE 151
S E+ E
Sbjct: 1886 LSLEEVEGH 1894
Score = 36.2 bits (83), Expect = 0.003
Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 26/105 (24%)
Query: 73 YDNLRYAA---NKIDPRKHKYSSIGLSI----------VTLLFNAAAG-----NISALRR 114
Y + A N+ D H + G SI +T+ F G N SA+
Sbjct: 1636 YKTSKAAQDVWNRAD--NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 115 WGKTPLDEAKTFKRDRIIQILEGSLSSTSSAEDSEDESLQLPQIT 159
+T +D + +I + E + STS SE L Q T
Sbjct: 1694 --ETIVDGKLKTE--KIFK--EINEHSTSYTFRSEKGLLSATQFT 1732
Score = 36.2 bits (83), Expect = 0.003
Identities = 27/171 (15%), Positives = 48/171 (28%), Gaps = 84/171 (49%)
Query: 1 MSSSSQYQKWD--------ILTPIFQVGL------PAKS--------------GVSGSML 32
+ S W+ +T +F +G+ P S GV ML
Sbjct: 285 ETDS-----WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 33 VVVPNTMGIALFSPPLDALGNSCRGVQFCEELVKTFNFHKYDNLRYAANKIDPRKHKYSS 92
+ + + + ++ V N H + K
Sbjct: 340 SIS----NL-----TQEQV----------QDYVNKTNSH-----------LPAGKQ---- 365
Query: 93 IGLSIVTLLFNAA-----AGNISALR------RWGKTP--LDEAKTFKRDR 130
+ +S L N A +G +L R K P LD+++ +R
Sbjct: 366 VEIS----LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Score = 26.6 bits (58), Expect = 5.0
Identities = 20/128 (15%), Positives = 33/128 (25%), Gaps = 43/128 (33%)
Query: 39 MGIALF--SP------------PLDALGNSCRGVQFCEELVKTFNF---------HKYDN 75
MG+ L+ S D G S + + T +F Y
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 76 LRYAANKIDPRKHK--YSSIGLSIVTLLFNAAAGNISA------------------LRRW 115
+ + K + + I + F + G +SA L+
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK 1750
Query: 116 GKTPLDEA 123
G P D
Sbjct: 1751 GLIPADAT 1758
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 2e-04
Identities = 26/131 (19%), Positives = 37/131 (28%), Gaps = 38/131 (29%)
Query: 49 DALGNSCRGVQFCEELVKTFN-------FHKY-----DNLRYAANKIDPRKHKYSSIGLS 96
D L + + T KY +L +PR+ S I S
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL--SIIAES 336
Query: 97 IVTLLFNAAAGNISALRRWGKTPLDEAKTFKRDRIIQILEGSLSSTSSAEDSE------- 149
I L W D K D++ I+E SL+ AE +
Sbjct: 337 I-----------RDGLATW-----DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 150 -DESLQLPQIT 159
S +P I
Sbjct: 381 FPPSAHIPTIL 391
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 32.3 bits (74), Expect = 0.043
Identities = 8/61 (13%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 76 LRYAANKIDPRKHKYSSIGLSIVTLLFNAAAGNISALRRWGKTPLDEAKTFKRDRIIQIL 135
+ + + + L+F+ + + +WG T L+ K ++ ++++
Sbjct: 118 VFKNIFN----YFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMM 173
Query: 136 E 136
E
Sbjct: 174 E 174
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.31
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 14/42 (33%)
Query: 122 EAKTFKRDRIIQILEGSLSSTSSAEDSEDESLQLPQITSKKT 163
E + K+ L+ SL A+DS P + K T
Sbjct: 18 EKQALKK------LQASLKLY--ADDSA------PALAIKAT 45
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 29.4 bits (67), Expect = 0.47
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 95 LSIVTLLFNAAAGNISALRRWGKTPLDEAKTFKRDRIIQILEGSLSSTSSAEDSEDESLQ 154
IVTLL A + + + G TPL AK + +L+ TS S+ +
Sbjct: 357 TDIVTLLLKNGA-SPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMS 415
Query: 155 LPQI 158
P+
Sbjct: 416 FPET 419
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 28.2 bits (64), Expect = 0.88
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 95 LSIVTLLFNAAAGNISALRRWGKTPLDEAKTFKRDRIIQILE 136
+ IV LL + A + +A+ +G P+D ++ + E
Sbjct: 89 VDIVKLLLSYGA-SRNAVNIFGLRPVDYTDDESMKSLLLLPE 129
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 27.8 bits (63), Expect = 1.6
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 97 IVTLLFNAAAGNISALRRWGKTPLDEAKTFKRDRIIQIL 135
+L ++ A+ + G+T D A + ++
Sbjct: 247 ACRILVENLC-DMEAVNKVGQTAFDVADEDILGYLEELQ 284
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 27.4 bits (62), Expect = 1.7
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 97 IVTLLFNAAAGNISALRRWGKTPLDEAKTFKRDRIIQIL 135
+ L A +S ++G+ P+D+AK R+ + +
Sbjct: 120 VAEDLVANGA-LVSICNKYGEMPVDKAKAPLRELLRERA 157
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 27.3 bits (62), Expect = 1.8
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 97 IVTLLFNAAAGNISALRRWGKTPLDEAKTFKRDRIIQIL 135
+V L A N+ G T D A+ + R+ ++ ++
Sbjct: 118 VVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 26.4 bits (59), Expect = 4.4
Identities = 4/41 (9%), Positives = 11/41 (26%), Gaps = 1/41 (2%)
Query: 95 LSIVTLLFNAAAGNISALRRWGKTPLDEAKTFKRDRIIQIL 135
++ LL + G + K + ++
Sbjct: 303 QEVLQLLQEKLD-EVVRSLNTGAGGAVKRKKKAAPAVKRMK 342
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 26.0 bits (57), Expect = 7.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 23 AKSGVSGSMLVVVPNTMG 40
AK G GS L+VVP G
Sbjct: 524 AKYGAKGSTLIVVPFNQG 541
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 25.5 bits (57), Expect = 7.9
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 97 IVTLLFNAAAGNISALRRWGKTPLDEAKTFKRDRIIQIL 135
+V L A +I G T L+ A+ +
Sbjct: 125 VVEALVELGA-DIEVEDERGLTALELAREILKTTPKGNP 162
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 25.1 bits (56), Expect = 7.9
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 95 LSIVTLLFNAAAGNISALRRWGKTPLDEA 123
L + +L A A + WG+ P+D A
Sbjct: 91 LDTLVVLHRAGA-RLDVRDAWGRLPVDLA 118
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 25.0 bits (56), Expect = 8.4
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 97 IVTLLFNAAAGNISALRRWGKTPLDEAKTFKRDRIIQILE 136
+V LL A ++ ++ KT D + + + +IL+
Sbjct: 115 VVELLIKYGA-DVHTQSKFCKTAFDISIDNGNEDLAEILQ 153
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 25.3 bits (55), Expect = 9.2
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 97 IVTLLFNAAAGNISALRRWGKTPLDEAKTFKRDRIIQILE 136
+ LL A +I G+TPLD AK K + ++L
Sbjct: 220 CLKLLLRGKA-SIEIANESGETPLDIAKRLKHEHCEELLT 258
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.375
Gapped
Lambda K H
0.267 0.0566 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,355,505
Number of extensions: 131142
Number of successful extensions: 227
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 25
Length of query: 163
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 77
Effective length of database: 4,300,587
Effective search space: 331145199
Effective search space used: 331145199
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.6 bits)