RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5714
(163 letters)
>d1u60a_ e.3.1.2 (A:) Probable glutaminase YbaS {Escherichia coli
[TaxId: 562]}
Length = 309
Score = 97.2 bits (242), Expect = 1e-25
Identities = 29/58 (50%), Positives = 37/58 (63%)
Query: 17 FQVGLPAKSGVSGSMLVVVPNTMGIALFSPPLDALGNSCRGVQFCEELVKTFNFHKYD 74
++VGLP KSGV G +L VVP MGIA FSPPLD GNS RG + + K ++ +
Sbjct: 251 YRVGLPGKSGVGGGILAVVPGVMGIAAFSPPLDEDGNSVRGQKMVASVAKQLGYNVFK 308
>d1mkia_ e.3.1.2 (A:) Probable glutaminase YbgJ {Bacillus subtilis
[TaxId: 1423]}
Length = 328
Score = 86.4 bits (214), Expect = 1e-21
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
Query: 17 FQVGLPAKSGVSGSMLVVVP----------NTMGIALFSPPLDALGNSCRGVQFCEELVK 66
VG+PAKSGVSG ++ +VP + GI ++ P +D GNS G + + +
Sbjct: 262 AFVGVPAKSGVSGGIMALVPPSARREQPFQSGCGIGIYGPAIDEYGNSLTGGMLLKHMAQ 321
Query: 67 TFNFH 71
+
Sbjct: 322 EWELS 326
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId:
9606]}
Length = 408
Score = 37.6 bits (86), Expect = 3e-04
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 95 LSIVTLLFNAAAGNISALRRWGKTPLDEAKTFKRDRIIQILEGSLSSTSSAEDSEDESLQ 154
IVTLL A + + + G TPL AK + +L+ TS S+ +
Sbjct: 343 TDIVTLLLKNGA-SPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMS 401
Query: 155 LPQI 158
P+
Sbjct: 402 FPET 405
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 209
Score = 35.5 bits (80), Expect = 0.001
Identities = 12/76 (15%), Positives = 19/76 (25%), Gaps = 1/76 (1%)
Query: 61 CEELVKTFNFHKYDNLRYAANKIDPRKHKYSSIGLSIVTLLFNAAAGNISALRRWGKTPL 120
E V H + P L + A N + P
Sbjct: 135 NTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFA-NREITDHMDRLPR 193
Query: 121 DEAKTFKRDRIIQILE 136
D A I+++L+
Sbjct: 194 DVASERLHHDIVRLLD 209
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans
[TaxId: 6239]}
Length = 277
Score = 34.7 bits (78), Expect = 0.003
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 95 LSIVTLLFNAAAGNISALRRWGKTPLDEAKTFKRDRIIQILE 136
+ +V L A ++ A+ T A+ I+ I +
Sbjct: 234 IEVVMYLIQQGA-SVEAVDATDHTARQLAQANNHHNIVDIFD 274
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human
(Homo sapiens) [TaxId: 9606]}
Length = 285
Score = 32.6 bits (73), Expect = 0.013
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 95 LSIVTLLFNAAAGNISALRRWGKTPLDEAKTFKRDRIIQIL 135
L +V L I+ GKT L A K +I ++L
Sbjct: 232 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL 272
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor
I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId:
10090]}
Length = 255
Score = 32.4 bits (72), Expect = 0.020
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 1/81 (1%)
Query: 55 CRGVQFCEELVKTFNFHKYDNLRYAANKIDPRKHKYSSIGLSIVTLLFNAAAGNISALRR 114
+ E + + N P + S++ LL A A + +A
Sbjct: 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA-DPTARMY 223
Query: 115 WGKTPLDEAKTFKRDRIIQIL 135
G+TPL A + ++L
Sbjct: 224 GGRTPLGSALLRPNPILARLL 244
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 31.9 bits (71), Expect = 0.025
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 95 LSIVTLLFNAAAGNISALRRWGKTPLDEAKTFKRDRIIQILEG 137
+ LL + A +I + KTPL AK + +++EG
Sbjct: 182 VEEAKLLVSQGA-SIYIENKEEKTPLQVAKGGLGLILKRMVEG 223
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 153
Score = 30.2 bits (66), Expect = 0.067
Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 1/82 (1%)
Query: 55 CRGVQFCEELVKTFNFHKYDNLRYAANKIDPRKHKYSSIGLSIVTLLFNAAAGNISALRR 114
+ +V+ H D K+ +V LL A ++ +
Sbjct: 73 MAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA-DVHTQSK 131
Query: 115 WGKTPLDEAKTFKRDRIIQILE 136
+ KT D + + + +IL+
Sbjct: 132 FCKTAFDISIDNGNEDLAEILQ 153
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 229
Score = 30.2 bits (66), Expect = 0.10
Identities = 7/51 (13%), Positives = 13/51 (25%), Gaps = 3/51 (5%)
Query: 85 PRKHKYSSIGLSIVTLLFNAAAGNISALRRWGKTPLDEAKTFKRDRIIQIL 135
P H + LL + G D A +++ +
Sbjct: 175 PLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA---LNEQVKKFF 222
Score = 26.3 bits (56), Expect = 1.6
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 95 LSIVTLLFNAAAGNISALRRWGKTPLDEA 123
V L ++ + + G+ PL +
Sbjct: 13 FFKVQELLHSKPSLLLQKDQDGRIPLHWS 41
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 29.8 bits (65), Expect = 0.11
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 95 LSIVTLLFNAAAGNISALRRWGKTPLDEAKTFKRDRIIQ 133
L +V L + A + S TPL A++ + I++
Sbjct: 190 LPLVRTLVRSGA-DSSLKNCHNDTPLMVARSRRVIDILR 227
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 221
Score = 28.7 bits (62), Expect = 0.28
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 108 NISALRRWGKTPLDEAKTFKRDRIIQIL-EGSLSSTSSAEDSEDES 152
+++ + G +P RI Q L + +L + +SEDE
Sbjct: 170 DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEE 215
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1,
MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 291
Score = 28.9 bits (63), Expect = 0.28
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 95 LSIVTLLFNAAAGNISALRRWGKTPLDEAKTFKRDRIIQILE 136
+L ++ A+ + G+T D A + I+ LE
Sbjct: 245 EEACRILVENLC-DMEAVNKVGQTAFDVAD----EDILGYLE 281
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo
sapiens) [TaxId: 9606]}
Length = 156
Score = 28.2 bits (61), Expect = 0.36
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 102 FNAAAGNISALRRWGKTPLDEAKTFKRDRIIQIL 135
F AA ++ G TPL+ A ++ IL
Sbjct: 119 FLAAESDLHRRDARGLTPLELALQRGAQDLVDIL 152
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId:
9606]}
Length = 156
Score = 27.2 bits (58), Expect = 0.74
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 114 RWGKTPLDEAKTFKRDRIIQIL 135
G T D A+ + R+ ++ ++
Sbjct: 131 HKGDTACDLARLYGRNEVVSLM 152
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 154
Score = 26.1 bits (56), Expect = 1.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 114 RWGKTPLDEAKTFKRDRIIQILEGSLSSTSSAED 147
G+TPLD AK K + ++L +LS ++
Sbjct: 112 ESGETPLDIAKRLKHEHCEELLTQALSGRFNSHV 145
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 25.4 bits (54), Expect = 3.8
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 95 LSIVTLLFNAAAGNISALRRWGKTPLDEA 123
+SIV L + A + + G P+D
Sbjct: 272 ISIVDALLDYGA-DPFIANKSGLRPVDFG 299
>d1mnta_ a.43.1.1 (A:) Mnt repressor {Salmonella bacteriophage P22
[TaxId: 10754]}
Length = 66
Score = 23.6 bits (51), Expect = 5.6
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 131 IIQILEGSLSSTSSAEDSEDESLQL 155
++QI++ +LS S +++ +L
Sbjct: 34 LLQIVQDALSKPSPVTGYRNDAERL 58
>d1ggxa_ d.22.1.1 (A:) Red fluorescent protein (fp583 or
dsred(clontech)) {Coral (Discosoma sp.) [TaxId: 86600]}
Length = 219
Score = 24.3 bits (53), Expect = 8.7
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 10 WDILTPIFQVG 20
WDIL+P FQ G
Sbjct: 52 WDILSPQFQYG 62
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.375
Gapped
Lambda K H
0.267 0.0395 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 562,278
Number of extensions: 24179
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 20
Length of query: 163
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 84
Effective length of database: 1,322,926
Effective search space: 111125784
Effective search space used: 111125784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)