Query psy5715
Match_columns 107
No_of_seqs 164 out of 1020
Neff 8.3
Searched_HMMs 46136
Date Sat Aug 17 00:47:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5715.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5715hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04372 RhoGAP_chimaerin RhoGA 99.9 7.6E-25 1.6E-29 150.2 7.7 83 9-101 112-194 (194)
2 cd04386 RhoGAP_nadrin RhoGAP_n 99.9 1.2E-24 2.7E-29 150.0 7.8 89 9-105 115-203 (203)
3 cd04392 RhoGAP_ARHGAP19 RhoGAP 99.9 1.5E-24 3.2E-29 150.2 7.6 86 9-104 114-199 (208)
4 cd04390 RhoGAP_ARHGAP22_24_25 99.9 7.3E-24 1.6E-28 145.7 7.9 83 9-101 117-199 (199)
5 cd04395 RhoGAP_ARHGAP21 RhoGAP 99.9 1.6E-23 3.5E-28 143.7 8.7 83 9-101 114-196 (196)
6 cd04402 RhoGAP_ARHGAP20 RhoGAP 99.9 1.8E-23 3.8E-28 143.2 8.1 86 9-105 107-192 (192)
7 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 99.9 2E-23 4.3E-28 144.4 7.5 86 9-104 101-203 (206)
8 cd04396 RhoGAP_fSAC7_BAG7 RhoG 99.9 9.9E-23 2.2E-27 142.6 7.9 80 9-100 145-224 (225)
9 cd04394 RhoGAP-ARHGAP11A RhoGA 99.9 1.2E-22 2.7E-27 140.1 7.3 85 9-102 110-196 (202)
10 cd04391 RhoGAP_ARHGAP18 RhoGAP 99.9 1.2E-22 2.7E-27 141.2 7.4 88 9-103 117-207 (216)
11 cd04398 RhoGAP_fRGD1 RhoGAP_fR 99.9 7.5E-23 1.6E-27 139.8 6.0 79 9-101 114-192 (192)
12 cd04374 RhoGAP_Graf RhoGAP_Gra 99.9 2.8E-22 6E-27 138.4 7.3 77 9-96 127-203 (203)
13 cd04408 RhoGAP_GMIP RhoGAP_GMI 99.9 3.6E-22 7.7E-27 137.6 7.5 80 9-96 121-200 (200)
14 cd04404 RhoGAP-p50rhoGAP RhoGA 99.9 4.5E-22 9.7E-27 136.4 7.9 81 9-101 115-195 (195)
15 KOG1451|consensus 99.9 1.2E-22 2.5E-27 155.2 5.2 84 9-103 486-569 (812)
16 cd04397 RhoGAP_fLRG1 RhoGAP_fL 99.9 4.2E-22 9.2E-27 138.3 7.4 85 9-104 121-210 (213)
17 KOG4407|consensus 99.9 2.6E-22 5.7E-27 162.3 7.1 85 9-103 1272-1356(1973)
18 cd04403 RhoGAP_ARHGAP27_15_12_ 99.9 7.9E-22 1.7E-26 134.5 8.4 77 9-96 111-187 (187)
19 cd04384 RhoGAP_CdGAP RhoGAP_Cd 99.9 2.4E-22 5.2E-27 138.0 5.9 83 9-96 113-195 (195)
20 cd04375 RhoGAP_DLC1 RhoGAP_DLC 99.9 8E-22 1.7E-26 137.6 6.9 92 9-102 113-215 (220)
21 cd04399 RhoGAP_fRGD2 RhoGAP_fR 99.9 3.8E-22 8.3E-27 138.5 5.0 83 9-103 125-210 (212)
22 cd04409 RhoGAP_PARG1 RhoGAP_PA 99.9 1.8E-21 3.8E-26 135.1 7.7 78 9-96 131-211 (211)
23 cd04388 RhoGAP_p85 RhoGAP_p85: 99.9 1.5E-21 3.3E-26 134.3 6.8 74 9-96 108-183 (200)
24 cd04378 RhoGAP_GMIP_PARG1 RhoG 99.8 2.5E-21 5.4E-26 133.6 7.0 78 9-96 123-203 (203)
25 cd04407 RhoGAP_myosin_IXB RhoG 99.8 6.9E-21 1.5E-25 129.9 8.5 77 9-95 108-185 (186)
26 cd04381 RhoGap_RalBP1 RhoGap_R 99.8 2.1E-21 4.5E-26 132.0 5.6 70 9-103 112-181 (182)
27 cd04382 RhoGAP_MgcRacGAP RhoGA 99.8 2.3E-20 4.9E-25 128.1 8.6 80 9-99 110-191 (193)
28 cd04383 RhoGAP_srGAP RhoGAP_sr 99.8 1.7E-20 3.7E-25 128.1 7.8 75 9-96 113-188 (188)
29 cd04385 RhoGAP_ARAP RhoGAP_ARA 99.8 2.3E-20 5.1E-25 127.0 7.8 75 9-97 110-184 (184)
30 cd04406 RhoGAP_myosin_IXA RhoG 99.8 1.6E-20 3.4E-25 128.1 7.0 77 9-95 108-185 (186)
31 cd04400 RhoGAP_fBEM3 RhoGAP_fB 99.8 1.2E-20 2.5E-25 129.0 5.9 70 9-103 120-189 (190)
32 cd04373 RhoGAP_p190 RhoGAP_p19 99.8 4.6E-20 9.9E-25 125.7 7.2 61 9-69 109-169 (185)
33 cd04389 RhoGAP_KIAA1688 RhoGAP 99.8 4.2E-20 9E-25 126.2 6.8 78 9-96 108-187 (187)
34 cd04377 RhoGAP_myosin_IX RhoGA 99.8 1.4E-19 3.1E-24 123.4 7.8 78 9-96 108-186 (186)
35 cd04393 RhoGAP_FAM13A1a RhoGAP 99.8 2.7E-19 5.9E-24 122.2 7.8 76 9-96 114-189 (189)
36 cd04379 RhoGAP_SYD1 RhoGAP_SYD 99.8 1.2E-19 2.7E-24 125.6 5.8 57 9-65 117-173 (207)
37 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 99.8 4.4E-19 9.5E-24 121.9 6.7 59 9-67 111-169 (196)
38 smart00324 RhoGAP GTPase-activ 99.7 7.1E-18 1.5E-22 113.1 7.7 77 9-96 97-173 (174)
39 KOG4270|consensus 99.7 2.9E-17 6.3E-22 126.7 7.6 90 9-106 259-348 (577)
40 cd00159 RhoGAP RhoGAP: GTPase- 99.7 6.4E-17 1.4E-21 107.4 7.6 77 9-96 93-169 (169)
41 KOG1450|consensus 99.7 3.2E-17 6.9E-22 127.2 6.5 83 9-102 567-649 (650)
42 cd04380 RhoGAP_OCRL1 RhoGAP_OC 99.7 1.4E-16 3.1E-21 111.1 6.2 59 9-67 140-199 (220)
43 KOG1117|consensus 99.6 8.1E-16 1.8E-20 121.8 3.8 78 9-104 822-899 (1186)
44 KOG4406|consensus 99.6 4.2E-15 9.2E-20 110.4 6.2 85 9-105 364-449 (467)
45 KOG4269|consensus 99.5 1.7E-14 3.7E-19 114.6 3.5 56 9-64 1016-1071(1112)
46 PF00620 RhoGAP: RhoGAP domain 99.5 8.3E-15 1.8E-19 96.0 -0.0 57 8-64 93-149 (151)
47 KOG1453|consensus 99.4 4.1E-13 9E-18 109.2 6.2 56 9-64 717-772 (918)
48 KOG2200|consensus 99.4 4.7E-13 1E-17 102.9 5.0 92 9-102 411-511 (674)
49 KOG3564|consensus 99.3 5.3E-12 1.1E-16 95.4 5.6 76 9-95 455-532 (604)
50 KOG2710|consensus 99.2 1.1E-11 2.4E-16 92.9 5.0 93 7-102 189-292 (412)
51 KOG4724|consensus 99.2 1.1E-11 2.4E-16 96.4 3.6 92 5-106 184-275 (741)
52 cd04405 RhoGAP_BRCC3-like RhoG 98.9 3.1E-09 6.8E-14 74.5 5.6 75 9-103 149-230 (235)
53 cd04401 RhoGAP_fMSB1 RhoGAP_fM 98.7 1.5E-08 3.3E-13 69.8 3.7 56 9-64 110-167 (198)
54 KOG1452|consensus 98.4 6.7E-07 1.4E-11 65.5 4.8 54 9-62 299-352 (442)
55 KOG4271|consensus 98.2 7.9E-07 1.7E-11 72.1 3.1 51 9-59 1026-1076(1100)
56 KOG1449|consensus 98.2 1.6E-07 3.4E-12 72.8 -1.0 71 30-105 1-74 (670)
57 KOG4370|consensus 97.5 4.8E-05 1E-09 57.6 2.2 50 9-58 204-253 (514)
58 KOG3565|consensus 97.4 0.00027 5.9E-09 56.4 4.7 55 9-63 313-367 (640)
59 KOG1449|consensus 90.7 0.078 1.7E-06 42.1 0.1 82 9-105 308-390 (670)
60 PF08101 DUF1708: Domain of un 90.0 0.39 8.4E-06 36.9 3.4 56 9-64 112-169 (420)
61 KOG1453|consensus 86.9 0.4 8.7E-06 40.2 1.8 54 9-62 605-668 (918)
62 KOG4271|consensus 85.1 1 2.2E-05 37.9 3.2 96 9-104 477-594 (1100)
63 KOG4724|consensus 62.2 2.4 5.2E-05 34.5 -0.1 57 6-62 525-589 (741)
64 PRK15361 pathogenicity island 47.0 15 0.00032 25.4 1.7 19 45-63 1-20 (195)
65 PF02520 DUF148: Domain of unk 42.7 57 0.0012 20.0 3.9 25 9-34 86-110 (113)
66 PF01418 HTH_6: Helix-turn-hel 41.9 62 0.0013 18.4 3.7 30 9-38 5-34 (77)
67 PF00646 F-box: F-box domain; 41.8 36 0.00078 17.0 2.5 31 9-39 9-39 (48)
68 PF08281 Sigma70_r4_2: Sigma-7 41.2 45 0.00098 17.3 2.9 20 9-28 2-21 (54)
69 PF08100 Dimerisation: Dimeris 40.3 60 0.0013 17.4 3.2 24 11-34 25-51 (51)
70 PRK12303 tumor necrosis factor 39.8 32 0.00069 22.5 2.4 58 43-107 120-183 (192)
71 smart00256 FBOX A Receptor for 38.1 49 0.0011 15.6 4.2 33 9-41 4-36 (41)
72 PF08525 OapA_N: Opacity-assoc 37.2 34 0.00074 16.2 1.7 20 14-33 2-21 (30)
73 PF07964 Red1: Rec10 / Red1; 34.6 75 0.0016 26.4 4.2 83 10-103 28-110 (706)
74 PF06304 DUF1048: Protein of u 32.8 1.2E+02 0.0027 18.7 4.6 30 9-38 11-40 (103)
75 PF08149 BING4CT: BING4CT (NUC 30.1 46 0.00099 19.8 1.8 16 6-21 59-74 (80)
76 TIGR00168 infC translation ini 28.8 64 0.0014 21.7 2.6 39 19-57 124-163 (165)
77 PF06025 DUF913: Domain of Unk 28.0 95 0.0021 23.6 3.7 24 16-39 67-90 (379)
78 PRK11302 DNA-binding transcrip 27.5 1.1E+02 0.0023 21.7 3.7 30 9-38 5-34 (284)
79 PF12937 F-box-like: F-box-lik 27.3 76 0.0016 15.9 2.2 30 9-38 7-36 (47)
80 PF07527 Hairy_orange: Hairy O 25.1 1.1E+02 0.0023 15.5 3.4 30 9-38 12-41 (43)
81 PF00336 DNA_pol_viral_C: DNA 23.3 97 0.0021 22.0 2.7 36 5-40 8-47 (245)
82 COG2257 Uncharacterized homolo 22.6 1.8E+02 0.0038 17.8 3.4 27 16-42 65-91 (92)
83 PRK11557 putative DNA-binding 20.8 1.2E+02 0.0025 21.5 2.9 28 11-38 3-30 (278)
84 cd08324 CARD_NOD1_CARD4 Caspas 20.5 1.4E+02 0.0031 17.9 2.7 30 9-38 46-75 (85)
85 TIGR03209 P21_Cbot clostridium 20.5 1.8E+02 0.0039 18.0 3.5 20 9-28 99-118 (142)
No 1
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=99.91 E-value=7.6e-25 Score=150.16 Aligned_cols=83 Identities=35% Similarity=0.513 Sum_probs=73.4
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
++++.++.+||++|+.+|+||+.||++|+++++.|||++.|||+||||+|+|+++.+..+....... +..
T Consensus 112 ~~l~~~l~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaivf~P~Ll~~~~~~~~~~~~~~~~----------~~~ 181 (194)
T cd04372 112 EAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGPTLMRPPEDSALTTLNDMRY----------QIL 181 (194)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCCccHHHHHHhHHH----------HHH
Confidence 7899999999999999999999999999999999999999999999999999987654443332222 678
Q ss_pred HHHHHHhcccccc
Q psy5715 89 VRKVSVDKFYCIF 101 (107)
Q Consensus 89 vv~~lI~~~~~iF 101 (107)
++++||+||++||
T Consensus 182 iv~~LI~~~~~iF 194 (194)
T cd04372 182 IVQLLITNEDVLF 194 (194)
T ss_pred HHHHHHHhhHhhC
Confidence 9999999999998
No 2
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.91 E-value=1.2e-24 Score=149.98 Aligned_cols=89 Identities=21% Similarity=0.384 Sum_probs=75.6
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
+.+++++.+||+.|+.+|+||+.||++|+++++.|||+++|||+||||+|+|++.++...+......+ ..+.
T Consensus 115 ~~l~~ll~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLai~faP~ll~~~~~~~~~~~~~~~~~--------~~~~ 186 (203)
T cd04386 115 QAIWRILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVLAPNLLWAKNEGSLAEMAAGTSV--------HVVA 186 (203)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHhccccCCCCCCChhhhhhhhhhH--------HHHH
Confidence 78999999999999999999999999999999999999999999999999999865432222111111 1578
Q ss_pred HHHHHHhccccccCCCC
Q psy5715 89 VRKVSVDKFYCIFTPTV 105 (107)
Q Consensus 89 vv~~lI~~~~~iF~~~~ 105 (107)
++++||+||+.||+++|
T Consensus 187 iv~~LI~~~~~iF~~~~ 203 (203)
T cd04386 187 IVELIISHADWFFPGEV 203 (203)
T ss_pred HHHHHHHhHHHhCCCCC
Confidence 99999999999999986
No 3
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.91 E-value=1.5e-24 Score=150.25 Aligned_cols=86 Identities=24% Similarity=0.275 Sum_probs=75.2
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
++++.++.+||++||.+|+||+.||++|+++++.|||++.|||+||||+|+|++..+..++...... .+.
T Consensus 114 ~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~----------~~~ 183 (208)
T cd04392 114 EALQLLLLLLPEENRNLLKLILDLLYQTAKHEDKNKMSADNLALLFTPHLICPRNLTPEDLHENAQK----------LNS 183 (208)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHhCcccCCCCCCCHHHHHHHHHH----------HHH
Confidence 7889999999999999999999999999999999999999999999999999886665544322111 578
Q ss_pred HHHHHHhccccccCCC
Q psy5715 89 VRKVSVDKFYCIFTPT 104 (107)
Q Consensus 89 vv~~lI~~~~~iF~~~ 104 (107)
+|++||+||++||+..
T Consensus 184 iv~~lI~~~~~iF~~~ 199 (208)
T cd04392 184 IVTFMIKHSQKLFKAP 199 (208)
T ss_pred HHHHHHHHHHHHcCCc
Confidence 9999999999999864
No 4
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=99.90 E-value=7.3e-24 Score=145.70 Aligned_cols=83 Identities=31% Similarity=0.405 Sum_probs=74.0
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
.++++++.+||++|+.+|+||+.||++|+++++.|||+++|||+||||+|+|++..++..+...... ...
T Consensus 117 ~~l~~~l~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~llr~~~~~~~~~~~~~~~----------~~~ 186 (199)
T cd04390 117 GELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLATVFGPNILRPKVEDPATIMEGTPQ----------IQQ 186 (199)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhccccCCCCCCCHHHHHhccHH----------HHH
Confidence 6889999999999999999999999999999999999999999999999999987776555543222 467
Q ss_pred HHHHHHhcccccc
Q psy5715 89 VRKVSVDKFYCIF 101 (107)
Q Consensus 89 vv~~lI~~~~~iF 101 (107)
++++||+|+++||
T Consensus 187 ~~~~lI~~~~~~F 199 (199)
T cd04390 187 LMTVMISKHEPLF 199 (199)
T ss_pred HHHHHHHhhhhcC
Confidence 9999999999998
No 5
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.90 E-value=1.6e-23 Score=143.74 Aligned_cols=83 Identities=46% Similarity=0.702 Sum_probs=73.7
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
..+++++.+||+.|+.+|+|++.||++|+++++.|+|+++|||+||||+|+|++.++...+...... ++.
T Consensus 114 ~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi~faP~l~r~~~~~~~~~~~~~~~----------~~~ 183 (196)
T cd04395 114 KELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVFGPTLVRTSDDNMETMVTHMPD----------QCK 183 (196)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccccccchHHhhccccCCCCCCCHHHHHHhHHH----------HHH
Confidence 7899999999999999999999999999999999999999999999999999987665544332222 688
Q ss_pred HHHHHHhcccccc
Q psy5715 89 VRKVSVDKFYCIF 101 (107)
Q Consensus 89 vv~~lI~~~~~iF 101 (107)
+++.||+||+++|
T Consensus 184 ii~~LI~~~d~~f 196 (196)
T cd04395 184 IVETLIQHYDWFF 196 (196)
T ss_pred HHHHHHHhCcccC
Confidence 9999999999998
No 6
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.90 E-value=1.8e-23 Score=143.19 Aligned_cols=86 Identities=23% Similarity=0.318 Sum_probs=74.3
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
+.+++++.+||+.|+.+|+|+++||++|+.+++.|+|+++|||+||||+|+|++.......... ...+.
T Consensus 107 ~~l~~~i~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~l~~~~~~~~~~~~~~-----------~~~~~ 175 (192)
T cd04402 107 AELQRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLLWPPASSELQNEDL-----------KKVTS 175 (192)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhccccccCCCCccHHHHHHH-----------HhhhH
Confidence 7899999999999999999999999999999999999999999999999999986541111111 11578
Q ss_pred HHHHHHhccccccCCCC
Q psy5715 89 VRKVSVDKFYCIFTPTV 105 (107)
Q Consensus 89 vv~~lI~~~~~iF~~~~ 105 (107)
++++||+|+++||+++.
T Consensus 176 ~~~~LI~~~~~IF~~~~ 192 (192)
T cd04402 176 LVQFLIENCQEIFGEDI 192 (192)
T ss_pred HHHHHHHhHHHhCCCCC
Confidence 99999999999999874
No 7
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.89 E-value=2e-23 Score=144.41 Aligned_cols=86 Identities=27% Similarity=0.369 Sum_probs=72.8
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccC-----------CCCCCccCccccccccccccCCCChhh------HHH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSE-----------VNKMEARNLAIMFGPTLVRAGDDRSWT------CLV 71 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~-----------~nkM~~~nLaivf~P~ll~~~~~~~~~------~~~ 71 (107)
++++.++.+||+.||.+|+||+.||++|+++++ .|||+++|||+||||+|+|++..+... ...
T Consensus 101 ~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~ 180 (206)
T cd04376 101 EALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLHKQKSGEREFVQASLRIE 180 (206)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhccccCCCCCcccccchhhhhHH
Confidence 889999999999999999999999999999986 799999999999999999988654321 111
Q ss_pred HHHHhhhhccccchhhHHHHHHHhccccccCCC
Q psy5715 72 FGFYKLLGAHFHVSSGNVRKVSVDKFYCIFTPT 104 (107)
Q Consensus 72 ~~~~~~l~~~~~~~~~~vv~~lI~~~~~iF~~~ 104 (107)
... .+..||++||+||+.||...
T Consensus 181 ~~~----------~~~~vv~~LI~~~~~iF~~~ 203 (206)
T cd04376 181 EST----------AIINVVQTMIDNYEELFMVS 203 (206)
T ss_pred HHH----------HHHHHHHHHHHhHHHHcCCC
Confidence 111 15789999999999999865
No 8
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.88 E-value=9.9e-23 Score=142.56 Aligned_cols=80 Identities=25% Similarity=0.251 Sum_probs=69.3
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
++++.++.+||++|+.+|+||+.||++|+++++.|||+++|||+||||+|+++++.++.... .. .++.
T Consensus 145 ~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~~~~~~~~-~~-----------~~~~ 212 (225)
T cd04396 145 KEYRDLITRLPNLNRQLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHPDHEMDPKE-YK-----------LSRL 212 (225)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccCChhhhheeeccccCCCCccccCHHH-HH-----------HHHH
Confidence 78899999999999999999999999999999999999999999999999998765432211 11 1578
Q ss_pred HHHHHHhccccc
Q psy5715 89 VRKVSVDKFYCI 100 (107)
Q Consensus 89 vv~~lI~~~~~i 100 (107)
+|++||+|++++
T Consensus 213 ~ve~lI~~~~~~ 224 (225)
T cd04396 213 VVEFLIEHQDKF 224 (225)
T ss_pred HHHHHHHhHHhh
Confidence 999999999986
No 9
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.88 E-value=1.2e-22 Score=140.06 Aligned_cols=85 Identities=25% Similarity=0.341 Sum_probs=71.0
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCCh--hhHHHHHHHhhhhccccchh
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRS--WTCLVFGFYKLLGAHFHVSS 86 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 86 (107)
++++.++.+||+.|+.+|+||+.||++|+++++.|||+++|||+||||+|++++++.. .+.... .. ..+
T Consensus 110 ~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP~L~~~~~~~~~~s~~~~~-~~--------~~~ 180 (202)
T cd04394 110 SATLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAPNLFQSEEGGEKMSSSTEK-RL--------RLQ 180 (202)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcceeecCCCcccccchhHHH-hH--------HHH
Confidence 6788899999999999999999999999999999999999999999999999875422 111111 01 116
Q ss_pred hHHHHHHHhccccccC
Q psy5715 87 GNVRKVSVDKFYCIFT 102 (107)
Q Consensus 87 ~~vv~~lI~~~~~iF~ 102 (107)
+.+|++||+|+.+||.
T Consensus 181 ~~vv~~lI~~~~~i~~ 196 (202)
T cd04394 181 AAVVQTLIDNASNIGI 196 (202)
T ss_pred HHHHHHHHHHHHHHcc
Confidence 8899999999999995
No 10
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.88 E-value=1.2e-22 Score=141.24 Aligned_cols=88 Identities=28% Similarity=0.323 Sum_probs=72.6
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhh---HHHHHHHhhhhccccch
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWT---CLVFGFYKLLGAHFHVS 85 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~---~~~~~~~~~l~~~~~~~ 85 (107)
++++.++.+||+.|+.+|+||+.||++|+++++.|||+++|||+||||||+++....+.+ ....... ...
T Consensus 117 ~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~l~~~~~~~~~~~~~~~~~~~~-------~~~ 189 (216)
T cd04391 117 QALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVAMIMAPNLFPPRGKHSKDNESLQEEVNM-------AAG 189 (216)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHHHHhccccCCCCCCCCCcchhHHHHHHH-------HHH
Confidence 889999999999999999999999999999999999999999999999999987544322 1111000 011
Q ss_pred hhHHHHHHHhccccccCC
Q psy5715 86 SGNVRKVSVDKFYCIFTP 103 (107)
Q Consensus 86 ~~~vv~~lI~~~~~iF~~ 103 (107)
.+.+|++||+|++.||..
T Consensus 190 ~~~iv~~lI~~~~~if~~ 207 (216)
T cd04391 190 CANIMRLLIRYQDLLWTV 207 (216)
T ss_pred HHHHHHHHHHhHHHHhcC
Confidence 578999999999999975
No 11
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.88 E-value=7.5e-23 Score=139.84 Aligned_cols=79 Identities=33% Similarity=0.564 Sum_probs=70.8
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
++++.++.+||+.|+.+|+|++.||++|+++++.|||+++|||+||||+|+|++.++..++.. +..
T Consensus 114 ~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~l~~~~~~~~~~~~~--------------~~~ 179 (192)
T cd04398 114 DALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIWGPTLMNAAPDNAADMSF--------------QSR 179 (192)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHHHHHhhhhCCCCccchhhHHH--------------HHH
Confidence 889999999999999999999999999999999999999999999999999988653322211 578
Q ss_pred HHHHHHhcccccc
Q psy5715 89 VRKVSVDKFYCIF 101 (107)
Q Consensus 89 vv~~lI~~~~~iF 101 (107)
++++||+||++||
T Consensus 180 ~~~~LI~~~~~iF 192 (192)
T cd04398 180 VIETLLDNAYQIF 192 (192)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999998
No 12
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.87 E-value=2.8e-22 Score=138.45 Aligned_cols=77 Identities=30% Similarity=0.531 Sum_probs=68.1
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
.+++.++.+||++|+.+|++|+.||++|+++++.|||++.|||+||||+|+|++.++...+..... ++.
T Consensus 127 ~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~~~~~~~~~~~-----------~~~ 195 (203)
T cd04374 127 NAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQEETVAAIMDIKF-----------QNI 195 (203)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCCccHHHHHHhHH-----------HHH
Confidence 788999999999999999999999999999999999999999999999999998765544433222 688
Q ss_pred HHHHHHhc
Q psy5715 89 VRKVSVDK 96 (107)
Q Consensus 89 vv~~lI~~ 96 (107)
+|++||+|
T Consensus 196 vve~LIeN 203 (203)
T cd04374 196 VVEILIEN 203 (203)
T ss_pred HhhhHhcC
Confidence 99999987
No 13
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.87 E-value=3.6e-22 Score=137.58 Aligned_cols=80 Identities=28% Similarity=0.387 Sum_probs=67.4
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
++++.++.+||++||.||+||+.||++|+++++.|||+++|||+||||+|+|++..+...+....-.+ .|+.
T Consensus 121 ~~lk~li~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~--------~q~~ 192 (200)
T cd04408 121 RSLKELLGRLPVSNYNTLRHLMAHLYRVAERFEDNKMSPNNLGIVFGPTLLRPLVGGDVSMICLLDTG--------YQAQ 192 (200)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhccCCCHhHhhhhhccccCCCCCCCchHHHHHhccc--------hHHH
Confidence 89999999999999999999999999999999999999999999999999998865433322211111 1799
Q ss_pred HHHHHHhc
Q psy5715 89 VRKVSVDK 96 (107)
Q Consensus 89 vv~~lI~~ 96 (107)
+||+||+|
T Consensus 193 ~ve~li~~ 200 (200)
T cd04408 193 LVEFLISN 200 (200)
T ss_pred HHHHHhhC
Confidence 99999986
No 14
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.87 E-value=4.5e-22 Score=136.41 Aligned_cols=81 Identities=32% Similarity=0.517 Sum_probs=70.7
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
.++++++.+||+.|+.+|++|+.||++|+++++.|+|+++|||+||||+++|+++.+. ...... ..+.
T Consensus 115 ~~~~~~i~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~vfaP~l~~~~~~~~-~l~~~~-----------~~~~ 182 (195)
T cd04404 115 ERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVFGPNLLWAKDASM-SLSAIN-----------PINT 182 (195)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhheeeeccccCCCCccc-CHHHHH-----------HHHH
Confidence 8899999999999999999999999999999999999999999999999999885532 221111 1577
Q ss_pred HHHHHHhcccccc
Q psy5715 89 VRKVSVDKFYCIF 101 (107)
Q Consensus 89 vv~~lI~~~~~iF 101 (107)
++++||+||++||
T Consensus 183 ~~~~LI~~~~~iF 195 (195)
T cd04404 183 FTKFLLDHQDEIF 195 (195)
T ss_pred HHHHHHHhHHhhC
Confidence 9999999999998
No 15
>KOG1451|consensus
Probab=99.87 E-value=1.2e-22 Score=155.16 Aligned_cols=84 Identities=30% Similarity=0.526 Sum_probs=80.3
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
.+++.++.+||+-||..|..|++||.+|+.||..|.|++.||++||||||+|++++....+++++| |+.
T Consensus 486 ~aIHsLVHkLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRpQEETVAAiMdIKF-----------QNI 554 (812)
T KOG1451|consen 486 DAIHSLVHKLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRPQEETVAAIMDIKF-----------QNI 554 (812)
T ss_pred HHHHHHHHhccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccCchHHHHHHHHcchh-----------hhh
Confidence 999999999999999999999999999999999999999999999999999999998888888877 588
Q ss_pred HHHHHHhccccccCC
Q psy5715 89 VRKVSVDKFYCIFTP 103 (107)
Q Consensus 89 vv~~lI~~~~~iF~~ 103 (107)
|||+||+||+.||-.
T Consensus 555 VVEILIEnyeKIF~t 569 (812)
T KOG1451|consen 555 VVEILIENYEKIFKT 569 (812)
T ss_pred hHHHHHhhhHHHhcC
Confidence 999999999999954
No 16
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.87 E-value=4.2e-22 Score=138.35 Aligned_cols=85 Identities=24% Similarity=0.239 Sum_probs=71.1
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccC-----CCCCCccCccccccccccccCCCChhhHHHHHHHhhhhcccc
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSE-----VNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFH 83 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~-----~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~ 83 (107)
+.++.++.+||+.||.+|++|+.||++|+++|+ .|||+++|||+||||||+|++.++....... ..
T Consensus 121 ~~l~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~-~~-------- 191 (213)
T cd04397 121 RVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETGSKMDIHNLATVITPNILYSKTDNPNTGDEY-FL-------- 191 (213)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhcccCCCcCChHHhHHhhcccccCCCCCCcchHHHH-HH--------
Confidence 778899999999999999999999999998765 5999999999999999999886653222111 11
Q ss_pred chhhHHHHHHHhccccccCCC
Q psy5715 84 VSSGNVRKVSVDKFYCIFTPT 104 (107)
Q Consensus 84 ~~~~~vv~~lI~~~~~iF~~~ 104 (107)
...+|++||+||+.||+-.
T Consensus 192 --~~~vv~~LI~n~~~if~vp 210 (213)
T cd04397 192 --AIEAVNYLIENNEEFCEVP 210 (213)
T ss_pred --HHHHHHHHHHhHHHHhcCC
Confidence 4689999999999999753
No 17
>KOG4407|consensus
Probab=99.87 E-value=2.6e-22 Score=162.31 Aligned_cols=85 Identities=40% Similarity=0.608 Sum_probs=80.6
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
..|+.+|++||++||.||++|+.||.+|++|+++|||-++||||+|||+|+|++++++..|...+.. |+.
T Consensus 1272 ~~Lr~l~~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEprNLAi~FGPsiVRts~Dnm~tmVthM~d----------Qck 1341 (1973)
T KOG4407|consen 1272 HKLRNLLRKLPRHHYETLKFLIVHLSEVTKNSDVNKMEPRNLAIMFGPSIVRTSDDNMATMVTHMSD----------QCK 1341 (1973)
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHHHhcccccccccccceeEEeccceeccCCccHHHHhhcchh----------hhh
Confidence 8899999999999999999999999999999999999999999999999999999998887776655 899
Q ss_pred HHHHHHhccccccCC
Q psy5715 89 VRKVSVDKFYCIFTP 103 (107)
Q Consensus 89 vv~~lI~~~~~iF~~ 103 (107)
|||.||.+|+|+|++
T Consensus 1342 IVEtLI~~~dwfF~e 1356 (1973)
T KOG4407|consen 1342 IVETLIHYNDWFFDE 1356 (1973)
T ss_pred HHHHHHhhhhheecc
Confidence 999999999999986
No 18
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.87 E-value=7.9e-22 Score=134.54 Aligned_cols=77 Identities=31% Similarity=0.555 Sum_probs=67.6
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
++++.++.+||++|+.+|+||+.||++|+++++.|||++.|||+||||+|+|++.++. ++...... |+.
T Consensus 111 ~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf~P~ll~~~~~~~-~~~~~~~~----------~~~ 179 (187)
T cd04403 111 SAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPTLLRPEQETG-NIAVHMVY----------QNQ 179 (187)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhccccccCCCCcch-HHHHHhHH----------HHH
Confidence 7899999999999999999999999999999999999999999999999999986654 33323223 799
Q ss_pred HHHHHHhc
Q psy5715 89 VRKVSVDK 96 (107)
Q Consensus 89 vv~~lI~~ 96 (107)
||++||++
T Consensus 180 ~ve~l~~~ 187 (187)
T cd04403 180 IVELILLE 187 (187)
T ss_pred HHHHHhhC
Confidence 99999975
No 19
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.87 E-value=2.4e-22 Score=137.98 Aligned_cols=83 Identities=25% Similarity=0.427 Sum_probs=67.6
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
++++.++.+||++|+.+|+||+.||++|+++++.|||+++|||+||||+|+++++..+..+.+.+..... ..|+.
T Consensus 113 ~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~L~~~~~~~~~~~~~~~~~~~~-----~~q~~ 187 (195)
T cd04384 113 EKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVWAPNLLRSKQIESACFSGTAAFMEV-----RIQSV 187 (195)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhhHhhhhhcCCCCccccccchHHHHHHHH-----hhhhh
Confidence 7899999999999999999999999999999999999999999999999999986544322211111111 11789
Q ss_pred HHHHHHhc
Q psy5715 89 VRKVSVDK 96 (107)
Q Consensus 89 vv~~lI~~ 96 (107)
||++||+|
T Consensus 188 v~~~~~~~ 195 (195)
T cd04384 188 VVEFILNH 195 (195)
T ss_pred heehhhcC
Confidence 99999986
No 20
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.86 E-value=8e-22 Score=137.61 Aligned_cols=92 Identities=22% Similarity=0.236 Sum_probs=71.2
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHH-----------HHHHHhh
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCL-----------VFGFYKL 77 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~-----------~~~~~~~ 77 (107)
++++.++..||++||.+|++|+.||++|+++++.|||+++|||+||||+|++.+..+...+. +....+.
T Consensus 113 ~~l~~~i~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (220)
T cd04375 113 EAVQCAILLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLAPSLFHLNTSRRENSSPARRMQRKKSLGKPDQKE 192 (220)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhhhhcCCCCCCcccccchhhhccccccCCCcHHH
Confidence 89999999999999999999999999999999999999999999999999998643321100 0000000
Q ss_pred hhccccchhhHHHHHHHhccccccC
Q psy5715 78 LGAHFHVSSGNVRKVSVDKFYCIFT 102 (107)
Q Consensus 78 l~~~~~~~~~~vv~~lI~~~~~iF~ 102 (107)
+. ....+..+|++||+||+.||.
T Consensus 193 l~--e~~~~~~~v~~lI~~~~~lf~ 215 (220)
T cd04375 193 LS--ENKAAHQCLAYMIEECNTLFM 215 (220)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHhc
Confidence 00 001157789999999999996
No 21
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.86 E-value=3.8e-22 Score=138.55 Aligned_cols=83 Identities=19% Similarity=0.189 Sum_probs=71.4
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCC---CCCccCccccccccccccCCCChhhHHHHHHHhhhhccccch
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVN---KMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVS 85 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~n---kM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (107)
++++.++.+||++|+.+|++|+.||.+|++++..| ||+++|||+||||+++|+..+....+. . ..
T Consensus 125 ~~l~~~l~~LP~~n~~~L~~li~hL~rv~~~~~~~~~~kM~~~nLa~vfgp~llr~~~~~~~~~~-~-----------~~ 192 (212)
T cd04399 125 QGLQSTLSQLPKSHIATLDAIITHFYRLIEITKMGESEEEYADKLATSLSREILRPIIESLLTIG-D-----------KH 192 (212)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHhhhhhcCCCcccccccc-c-----------HH
Confidence 89999999999999999999999999999887666 699999999999999998755432211 1 12
Q ss_pred hhHHHHHHHhccccccCC
Q psy5715 86 SGNVRKVSVDKFYCIFTP 103 (107)
Q Consensus 86 ~~~vv~~lI~~~~~iF~~ 103 (107)
++.++++||+||++||++
T Consensus 193 ~~~~~e~Li~~~~~iF~~ 210 (212)
T cd04399 193 GYKFFRDLLTHKDQIFSE 210 (212)
T ss_pred HHHHHHHHHHhHHHhccc
Confidence 689999999999999986
No 22
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.85 E-value=1.8e-21 Score=135.12 Aligned_cols=78 Identities=33% Similarity=0.511 Sum_probs=66.3
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChh-hH--HHHHHHhhhhccccch
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSW-TC--LVFGFYKLLGAHFHVS 85 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~-~~--~~~~~~~~l~~~~~~~ 85 (107)
.+++.++.+||++||.+|+||+.||++|+++++.|||+++|||+||||+|+|++..+.. ++ ......
T Consensus 131 ~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llrp~~~~~~~~~~~~~~~~~---------- 200 (211)
T cd04409 131 LKSKDLLRQLPAPNYNTLQFLIVHLHRVSEQAEENKMSASNLGIIFGPTLIRPRPTDATVSLSSLVDYPH---------- 200 (211)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHcccccCCCChHHhhhhccccccCCCCCCcchhHHHHhhhhh----------
Confidence 57899999999999999999999999999999999999999999999999999865532 11 112122
Q ss_pred hhHHHHHHHhc
Q psy5715 86 SGNVRKVSVDK 96 (107)
Q Consensus 86 ~~~vv~~lI~~ 96 (107)
|+.|||+||++
T Consensus 201 ~~~~ve~li~~ 211 (211)
T cd04409 201 QARLVELLITY 211 (211)
T ss_pred HHHHHHHHhhC
Confidence 78999999975
No 23
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=99.85 E-value=1.5e-21 Score=134.31 Aligned_cols=74 Identities=30% Similarity=0.410 Sum_probs=64.8
Q ss_pred HHHHHHHh--hcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchh
Q psy5715 9 LKLVLVVH--ELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSS 86 (107)
Q Consensus 9 ~~l~~~l~--~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (107)
+.++.++. .||+.||.||+||+.||.+|+++++.|+|+++|||+||||+|+|++.....+.. + +
T Consensus 108 ~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r~~~~~~~~~~---~-----------~ 173 (200)
T cd04388 108 QLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFRFQPASSDSPE---F-----------H 173 (200)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhcCCCcccccchh---h-----------H
Confidence 78889987 899999999999999999999999999999999999999999999865332221 1 6
Q ss_pred hHHHHHHHhc
Q psy5715 87 GNVRKVSVDK 96 (107)
Q Consensus 87 ~~vv~~lI~~ 96 (107)
..+||.||.+
T Consensus 174 ~~vvE~Li~~ 183 (200)
T cd04388 174 IRIIEVLITS 183 (200)
T ss_pred HHHHHHHHHH
Confidence 8899999885
No 24
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=99.85 E-value=2.5e-21 Score=133.62 Aligned_cols=78 Identities=32% Similarity=0.455 Sum_probs=66.6
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChh---hHHHHHHHhhhhccccch
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSW---TCLVFGFYKLLGAHFHVS 85 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~---~~~~~~~~~~l~~~~~~~ 85 (107)
.+++.++.+||++|+.+|+||+.||++|+++++.|||+++|||+||||+|+|++..+.. +...... .
T Consensus 123 ~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLaivf~P~Ll~~~~~~~~~~~~~l~~~~----------~ 192 (203)
T cd04378 123 RKLKDLLRQLPASNYNTLQHLIAHLYRVAEQFEENKMSPNNLGIVFGPTLIRPRPGDADVSLSSLVDYG----------Y 192 (203)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHhhhhhccccCCCCCCCcchhHHHHHhhh----------h
Confidence 78999999999999999999999999999999999999999999999999999865332 1111111 1
Q ss_pred hhHHHHHHHhc
Q psy5715 86 SGNVRKVSVDK 96 (107)
Q Consensus 86 ~~~vv~~lI~~ 96 (107)
|+.+|++||+|
T Consensus 193 q~~~ve~li~~ 203 (203)
T cd04378 193 QARLVEFLITN 203 (203)
T ss_pred hHHHHHHHhhC
Confidence 78999999986
No 25
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=99.84 E-value=6.9e-21 Score=129.90 Aligned_cols=77 Identities=26% Similarity=0.393 Sum_probs=64.9
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCC-CChhhHHHHHHHhhhhccccchhh
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD-DRSWTCLVFGFYKLLGAHFHVSSG 87 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~-~~~~~~~~~~~~~~l~~~~~~~~~ 87 (107)
.+++.++.+||++|+.+|++|+.||++|+++++.|||+++|||+||||+|+|+++ .++...+..... +.
T Consensus 108 ~~l~~ll~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~~~d~~~~~~~~~~----------~~ 177 (186)
T cd04407 108 QAIYRVLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCLLRCPDSSDPLTSMKDVAK----------TT 177 (186)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhccccCCCCCCCHHHHHHhhhh----------hH
Confidence 7899999999999999999999999999999999999999999999999999764 333222222211 67
Q ss_pred HHHHHHHh
Q psy5715 88 NVRKVSVD 95 (107)
Q Consensus 88 ~vv~~lI~ 95 (107)
.+||+||.
T Consensus 178 ~~v~~li~ 185 (186)
T cd04407 178 TCVEMLIK 185 (186)
T ss_pred HHHHHHhh
Confidence 89999986
No 26
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=99.84 E-value=2.1e-21 Score=132.02 Aligned_cols=70 Identities=23% Similarity=0.369 Sum_probs=66.2
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
++++.++.+||++|+.+|+||+.||.+|+++++.|||+++|||+||||+|+. ++.
T Consensus 112 ~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~l~~-------------------------~~~ 166 (182)
T cd04381 112 QELQRLLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSPTVQI-------------------------SNR 166 (182)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCccccC-------------------------cHH
Confidence 8899999999999999999999999999999999999999999999999963 356
Q ss_pred HHHHHHhccccccCC
Q psy5715 89 VRKVSVDKFYCIFTP 103 (107)
Q Consensus 89 vv~~lI~~~~~iF~~ 103 (107)
+++.||+||+.||++
T Consensus 167 ~~~~li~~~~~if~~ 181 (182)
T cd04381 167 LLYALLTHCQELFGN 181 (182)
T ss_pred HHHHHHHHHHHHcCC
Confidence 899999999999986
No 27
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=99.83 E-value=2.3e-20 Score=128.05 Aligned_cols=80 Identities=30% Similarity=0.339 Sum_probs=67.7
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCCh--hhHHHHHHHhhhhccccchh
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRS--WTCLVFGFYKLLGAHFHVSS 86 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 86 (107)
+++++++.+||+.|+.+|+||+.||++|++ ++.|||++.|||+||||+|++.+..+. .+....... +
T Consensus 110 ~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~~~~~~~~~~~~~~----------~ 178 (193)
T cd04382 110 AALYQAISELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVPNPDPMTILQDTVR----------Q 178 (193)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCCCccHHHHHHHhHH----------H
Confidence 789999999999999999999999999999 999999999999999999999876543 222222222 6
Q ss_pred hHHHHHHHhcccc
Q psy5715 87 GNVRKVSVDKFYC 99 (107)
Q Consensus 87 ~~vv~~lI~~~~~ 99 (107)
..+|+.||+.-++
T Consensus 179 ~~vve~Li~~~~~ 191 (193)
T cd04382 179 PRVVERLLEIPSD 191 (193)
T ss_pred HHHHHHHHhCCcc
Confidence 8899999998654
No 28
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=99.83 E-value=1.7e-20 Score=128.13 Aligned_cols=75 Identities=24% Similarity=0.439 Sum_probs=64.2
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCCh-hhHHHHHHHhhhhccccchhh
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRS-WTCLVFGFYKLLGAHFHVSSG 87 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 87 (107)
+++++++.+||++|+.+|+||+.||++|+++++.|||+++|||+||||+|+|.+++.. .+.... .+
T Consensus 113 ~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~L~~~p~~~~~~~~~~~-------------~~ 179 (188)
T cd04383 113 HQIREILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICFGPTLMPVPEGQDQVSCQAH-------------VN 179 (188)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcccceeeeeccccCCCCCccHHHHHHH-------------HH
Confidence 7899999999999999999999999999999999999999999999999999775433 222221 57
Q ss_pred HHHHHHHhc
Q psy5715 88 NVRKVSVDK 96 (107)
Q Consensus 88 ~vv~~lI~~ 96 (107)
.+++.||.|
T Consensus 180 ~~~~~li~~ 188 (188)
T cd04383 180 ELIKTIIIH 188 (188)
T ss_pred HHHHHHhcC
Confidence 788888865
No 29
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.83 E-value=2.3e-20 Score=127.04 Aligned_cols=75 Identities=29% Similarity=0.449 Sum_probs=66.5
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
..++.++.+||++|+.+|++++.||++|+++++.|||+++|||+||||+|+|+++++..... ....
T Consensus 110 ~~l~~~i~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~P~ll~~~~~~~~~~~--------------~~~~ 175 (184)
T cd04385 110 ARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPTLFQTDEHSVGQTS--------------HEVK 175 (184)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhccccCCCCccchhHHH--------------HHHH
Confidence 78999999999999999999999999999999999999999999999999998865322211 1578
Q ss_pred HHHHHHhcc
Q psy5715 89 VRKVSVDKF 97 (107)
Q Consensus 89 vv~~lI~~~ 97 (107)
|++.||+||
T Consensus 176 v~~~Li~~~ 184 (184)
T cd04385 176 VIEDLIDNY 184 (184)
T ss_pred HHHHHHhcC
Confidence 999999997
No 30
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=99.83 E-value=1.6e-20 Score=128.15 Aligned_cols=77 Identities=26% Similarity=0.355 Sum_probs=65.2
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCC-CChhhHHHHHHHhhhhccccchhh
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD-DRSWTCLVFGFYKLLGAHFHVSSG 87 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~-~~~~~~~~~~~~~~l~~~~~~~~~ 87 (107)
..++.++.+||+.|+.+|++++.||.+|+++++.|||+++|||+||||+|+|.++ .++.....+... +.
T Consensus 108 ~~~~~li~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P~ll~~p~~~d~~~~~~~~~~----------~~ 177 (186)
T cd04406 108 RGVYSVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCILRCPDTTDPLQSVQDISK----------TT 177 (186)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcccccCCCCCCCHHHHHHHHhh----------cc
Confidence 7789999999999999999999999999999999999999999999999999875 344333333222 68
Q ss_pred HHHHHHHh
Q psy5715 88 NVRKVSVD 95 (107)
Q Consensus 88 ~vv~~lI~ 95 (107)
.+||+||.
T Consensus 178 ~~~~~~~~ 185 (186)
T cd04406 178 TCVELIVC 185 (186)
T ss_pred chhhhhcc
Confidence 89999874
No 31
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.82 E-value=1.2e-20 Score=129.02 Aligned_cols=70 Identities=33% Similarity=0.625 Sum_probs=65.1
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
++++.++.+||+.|+.+|++|+.||++|+++|+.|||+++|||+||||+|.++. .
T Consensus 120 ~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLa~vf~P~L~~~~-------------------------~ 174 (190)
T cd04400 120 LELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLRNVCIVFSPTLNIPA-------------------------G 174 (190)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHhhhhcCCCCCCCH-------------------------H
Confidence 789999999999999999999999999999999999999999999999997653 2
Q ss_pred HHHHHHhccccccCC
Q psy5715 89 VRKVSVDKFYCIFTP 103 (107)
Q Consensus 89 vv~~lI~~~~~iF~~ 103 (107)
++..+|++|+.||++
T Consensus 175 ~~~~~~~~~~~~f~~ 189 (190)
T cd04400 175 IFVLFLTDFDCIFGG 189 (190)
T ss_pred HHHHHHHHHHHHcCC
Confidence 566899999999986
No 32
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.81 E-value=4.6e-20 Score=125.73 Aligned_cols=61 Identities=34% Similarity=0.544 Sum_probs=56.9
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTC 69 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~ 69 (107)
++++.++++||+.|+.+|+|++.||++|+++++.|||+++|||+||||+|+|+...+..+.
T Consensus 109 ~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~P~L~~~~~~~~~~~ 169 (185)
T cd04373 109 HALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPTLMRPDFTSMEAL 169 (185)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHccccCCCCCCCHHHH
Confidence 7899999999999999999999999999999999999999999999999999887665444
No 33
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.81 E-value=4.2e-20 Score=126.16 Aligned_cols=78 Identities=22% Similarity=0.307 Sum_probs=67.0
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhc--cCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchh
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDN--SEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSS 86 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~--s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (107)
+.+++++.+||+.|+.+|+||+.||++|+++ ++.|||+++|||+||||+|+|++.+++..+...... +
T Consensus 108 ~~~~~li~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAivf~P~l~~~~~~~~~~~~~~~~~----------~ 177 (187)
T cd04389 108 DKAVEIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMVFAPNILRCTSDDPRVIFENTRK----------E 177 (187)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHccccCCCCCCCHHHHHHccHH----------H
Confidence 6788999999999999999999999999964 478999999999999999999987776554443322 6
Q ss_pred hHHHHHHHhc
Q psy5715 87 GNVRKVSVDK 96 (107)
Q Consensus 87 ~~vv~~lI~~ 96 (107)
..+++.||+|
T Consensus 178 ~~~~~~lI~~ 187 (187)
T cd04389 178 MSFLRTLIEH 187 (187)
T ss_pred HHHHHHHhcC
Confidence 8899999986
No 34
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=99.80 E-value=1.4e-19 Score=123.36 Aligned_cols=78 Identities=29% Similarity=0.422 Sum_probs=65.3
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCC-hhhHHHHHHHhhhhccccchhh
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDR-SWTCLVFGFYKLLGAHFHVSSG 87 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~-~~~~~~~~~~~~l~~~~~~~~~ 87 (107)
+++++++.+||+.|+.+|+|++.||++|+.+++.|||+++|||+||||+|+|+++.. ........ ..+.
T Consensus 108 ~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~ll~~~~~~~~~~~~~d~----------~~~~ 177 (186)
T cd04377 108 RALYSVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCILRCPDTADPLQSLQDV----------SKTT 177 (186)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhHhcCCCCCCCHHHHHHHH----------HHHH
Confidence 789999999999999999999999999999999999999999999999999988542 21111111 1268
Q ss_pred HHHHHHHhc
Q psy5715 88 NVRKVSVDK 96 (107)
Q Consensus 88 ~vv~~lI~~ 96 (107)
.++++||+.
T Consensus 178 ~~~e~li~~ 186 (186)
T cd04377 178 TCVETLIKE 186 (186)
T ss_pred HHHHHHhhC
Confidence 899999973
No 35
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=99.79 E-value=2.7e-19 Score=122.18 Aligned_cols=76 Identities=24% Similarity=0.355 Sum_probs=65.1
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
+++++++.+||+.|+.+|++++.||++|+++++.|+|+++|||+||||++++.+.+. .++..... .+.
T Consensus 114 ~~l~~li~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~vf~P~l~~~~~~~-~~~~~~~~-----------~~~ 181 (189)
T cd04393 114 RKLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVFGPDVFHVYTDV-EDMKEQEI-----------CSR 181 (189)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhhccCceeCCCCCc-ccHHHHHH-----------HHH
Confidence 789999999999999999999999999999999999999999999999999987532 22222211 578
Q ss_pred HHHHHHhc
Q psy5715 89 VRKVSVDK 96 (107)
Q Consensus 89 vv~~lI~~ 96 (107)
+++.||||
T Consensus 182 ~~~~li~~ 189 (189)
T cd04393 182 IMAKLLEN 189 (189)
T ss_pred HHHHHhcC
Confidence 99999986
No 36
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.79 E-value=1.2e-19 Score=125.61 Aligned_cols=57 Identities=37% Similarity=0.503 Sum_probs=54.0
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCC
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDR 65 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~ 65 (107)
+.+++++.+||+.|+.+|+||+.||++|+++++.|||++.|||+||||+|+++++.+
T Consensus 117 ~~~~~li~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLAivf~P~Ll~~~~~~ 173 (207)
T cd04379 117 HLTLSIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLAVCFGPVLMFCSQEF 173 (207)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhHHhhccccCCCCccc
Confidence 568899999999999999999999999999999999999999999999999988654
No 37
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=99.78 E-value=4.4e-19 Score=121.94 Aligned_cols=59 Identities=41% Similarity=0.678 Sum_probs=55.5
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChh
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSW 67 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~ 67 (107)
++++.++.+||++|+.+|++|+.||++|+++++.|||++.|||+||||+|+|+++.++.
T Consensus 111 ~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~~~~ 169 (196)
T cd04387 111 SCMLNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGPTLLRPSEKESK 169 (196)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHccccCCCCccccc
Confidence 67999999999999999999999999999999999999999999999999999865543
No 38
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=99.74 E-value=7.1e-18 Score=113.13 Aligned_cols=77 Identities=39% Similarity=0.553 Sum_probs=67.2
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
..++.++.+||+.|+.+|.+++.||++|+.+++.|+|+++|||+||||+|++++..+........ ..+.
T Consensus 97 ~~~~~~~~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~~~~~~~~~-----------~~~~ 165 (174)
T smart00324 97 RALRELISLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEVASLKDIR-----------HQNT 165 (174)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCcccHHHHHHHH-----------HHHH
Confidence 88999999999999999999999999999999999999999999999999999876654222111 1688
Q ss_pred HHHHHHhc
Q psy5715 89 VRKVSVDK 96 (107)
Q Consensus 89 vv~~lI~~ 96 (107)
++++||++
T Consensus 166 ~i~~li~~ 173 (174)
T smart00324 166 VVETLIEN 173 (174)
T ss_pred HHHHHHhc
Confidence 99999987
No 39
>KOG4270|consensus
Probab=99.71 E-value=2.9e-17 Score=126.69 Aligned_cols=90 Identities=27% Similarity=0.423 Sum_probs=74.3
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
+.++.++.+||+.|+..|+|+++||+.|++++++|||+++|||+|||||++|+..+-...+.+....+. ...
T Consensus 259 q~lr~~~~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~NlAiV~gPNl~~~~~p~~~l~~avqvs~~--------~~~ 330 (577)
T KOG4270|consen 259 QLLRQCLQKLPPTNYSLLRYLIRFLADVVEKEHVNKMSARNLAIVFGPNLLWMKDPLTALMYAVQVSNF--------LKG 330 (577)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhhhcccchhhceeEecCCccccCChHHHHHHHHHHHHH--------HHH
Confidence 899999999999999999999999999999999999999999999999999998643333333332222 355
Q ss_pred HHHHHHhccccccCCCCC
Q psy5715 89 VRKVSVDKFYCIFTPTVP 106 (107)
Q Consensus 89 vv~~lI~~~~~iF~~~~p 106 (107)
+++-.|++.++.|++.+.
T Consensus 331 lie~~l~~~~~~~~g~~~ 348 (577)
T KOG4270|consen 331 LIEKTLEERDTSFPGELE 348 (577)
T ss_pred HHHHHHHhhhccCCcccc
Confidence 778888888888887654
No 40
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=99.70 E-value=6.4e-17 Score=107.37 Aligned_cols=77 Identities=34% Similarity=0.471 Sum_probs=65.1
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
..++.++.+||+.|+.+|.+++.||++|+.+++.|+|+++|||+||||+|++++..+....... ..+..
T Consensus 93 ~~~~~~i~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~~~~~~~~-----------~~~~~ 161 (169)
T cd00159 93 EALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSDDELLEDI-----------KKLNE 161 (169)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCccHHHHHHh-----------HHHHH
Confidence 8899999999999999999999999999999999999999999999999999886551111111 11678
Q ss_pred HHHHHHhc
Q psy5715 89 VRKVSVDK 96 (107)
Q Consensus 89 vv~~lI~~ 96 (107)
++++||++
T Consensus 162 ~~~~li~~ 169 (169)
T cd00159 162 IVEFLIEN 169 (169)
T ss_pred HHHHHHhC
Confidence 99999875
No 41
>KOG1450|consensus
Probab=99.69 E-value=3.2e-17 Score=127.24 Aligned_cols=83 Identities=31% Similarity=0.618 Sum_probs=71.7
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
.++++++..||++||.||++|+.||.+|.+|++.|||+.+||||||||+++.+........ ..... +.+
T Consensus 567 ~~~~~li~~lP~~n~~Tlr~lv~HL~rv~shs~kNrMs~~NLaIVfgpTl~~~~~~~~~~a-~~~~~----------~~~ 635 (650)
T KOG1450|consen 567 DKVEELIGLLPDANYQTLRYLVRHLRRVLSHSDKNRMSRHNLAIVFGPTLIKPEQETSSEA-IHSTY----------QSQ 635 (650)
T ss_pred HHHHHHHhhCCCcchhHHHHHHHHHHHHHhccccccccccceEEEeccccccccccccchh-hHHhH----------HHH
Confidence 7889999999999999999999999999999999999999999999999999664422222 22222 789
Q ss_pred HHHHHHhccccccC
Q psy5715 89 VRKVSVDKFYCIFT 102 (107)
Q Consensus 89 vv~~lI~~~~~iF~ 102 (107)
+|+.||+++..+|+
T Consensus 636 ivq~lle~~~~~f~ 649 (650)
T KOG1450|consen 636 IVQLLLENVSSAFG 649 (650)
T ss_pred HHHHHHHhhHhhcc
Confidence 99999999999997
No 42
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=99.66 E-value=1.4e-16 Score=111.11 Aligned_cols=59 Identities=22% Similarity=0.356 Sum_probs=55.0
Q ss_pred HHHHHHHh-hcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChh
Q psy5715 9 LKLVLVVH-ELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSW 67 (107)
Q Consensus 9 ~~l~~~l~-~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~ 67 (107)
+.++++++ +||+.|+.+|.||+.||++|+++++.|+|++.|||+||||+|+|++...+.
T Consensus 140 ~~~~~ll~~~LP~~n~~~l~~L~~fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~~~~~ 199 (220)
T cd04380 140 EDKRQVIRISLPPVHRNVFVYLCSFLRELLSESADRGLDENTLATIFGRVLLRDPPRAGG 199 (220)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHhHHHhcchhccCCcccch
Confidence 66788999 999999999999999999999999999999999999999999999866543
No 43
>KOG1117|consensus
Probab=99.59 E-value=8.1e-16 Score=121.78 Aligned_cols=78 Identities=28% Similarity=0.456 Sum_probs=71.2
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
+++.++|..||..||.||+-|+.||++|.++++.|+|+++|||.||||+||.....+. .+.+
T Consensus 822 ~rY~~lI~~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa~sLFqTdgqde------------------hevn 883 (1186)
T KOG1117|consen 822 KRYGALIRSLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFAPSLFQTDGQDE------------------HEVN 883 (1186)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhheecCCCch------------------hhhh
Confidence 8999999999999999999999999999999999999999999999999999764432 1578
Q ss_pred HHHHHHhccccccCCC
Q psy5715 89 VRKVSVDKFYCIFTPT 104 (107)
Q Consensus 89 vv~~lI~~~~~iF~~~ 104 (107)
|++-||++|..+|+-+
T Consensus 884 VledLingYvvVF~v~ 899 (1186)
T KOG1117|consen 884 VLEDLINGYVVVFEVD 899 (1186)
T ss_pred HHHHHhcCceEEEEec
Confidence 9999999999999754
No 44
>KOG4406|consensus
Probab=99.57 E-value=4.2e-15 Score=110.39 Aligned_cols=85 Identities=31% Similarity=0.469 Sum_probs=73.0
Q ss_pred HHHHHHHhh-cCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhh
Q psy5715 9 LKLVLVVHE-LPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSG 87 (107)
Q Consensus 9 ~~l~~~l~~-LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (107)
.+.+++++. ||+.|+.++++++.||.+|++|+..|+|++.|||+||||+++|+...+...... .. -+
T Consensus 364 ~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~sNLa~vfGpnl~w~~~~s~tl~q~-np-----------in 431 (467)
T KOG4406|consen 364 SSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTASNLAVVFGPNLLWAQDESLTLKQI-NP-----------IN 431 (467)
T ss_pred hHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhccccceeeecccccccccccccHHHh-cc-----------HH
Confidence 788899997 999999999999999999999999999999999999999999998554432211 11 47
Q ss_pred HHHHHHHhccccccCCCC
Q psy5715 88 NVRKVSVDKFYCIFTPTV 105 (107)
Q Consensus 88 ~vv~~lI~~~~~iF~~~~ 105 (107)
..++++|+||..+|....
T Consensus 432 ~F~~~li~~~~~~f~~~~ 449 (467)
T KOG4406|consen 432 KFTKFLIEHYKKLFTTPE 449 (467)
T ss_pred HHHHHHHHhhhhccCCCC
Confidence 789999999999998654
No 45
>KOG4269|consensus
Probab=99.48 E-value=1.7e-14 Score=114.59 Aligned_cols=56 Identities=34% Similarity=0.581 Sum_probs=53.8
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCC
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD 64 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~ 64 (107)
..+..+|.+||++|..++.+|+.||+||++++.+|||+.+|||+||||||.+|.+.
T Consensus 1016 ~~~~~li~slP~aNl~l~~~LlehL~RI~e~ekvNKMnlrNlciVFsPTLniPse~ 1071 (1112)
T KOG4269|consen 1016 GCMCDLISSLPPANLALFLFLLEHLKRIAEKEKVNKMNLRNLCIVFSPTLNIPSEI 1071 (1112)
T ss_pred hhHHHHHHhCCChhHHHHHHHHHHHHHHHhhcccccccccceeeeecccccCcHHh
Confidence 78999999999999999999999999999999999999999999999999998844
No 46
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=99.46 E-value=8.3e-15 Score=95.95 Aligned_cols=57 Identities=40% Similarity=0.639 Sum_probs=53.3
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCC
Q psy5715 8 QLKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD 64 (107)
Q Consensus 8 ~~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~ 64 (107)
.+.++.++.+||..|+.+|.+++.||++|+.+++.|+|+++|||+||||+|++++..
T Consensus 93 ~~~~~~~l~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~~~ 149 (151)
T PF00620_consen 93 IEAIRSLLQSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPPSS 149 (151)
T ss_dssp HHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGSTS
T ss_pred HHHHHHhhhccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCCcC
Confidence 389999999999999999999999999999999999999999999999999998743
No 47
>KOG1453|consensus
Probab=99.40 E-value=4.1e-13 Score=109.24 Aligned_cols=56 Identities=45% Similarity=0.769 Sum_probs=54.1
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCC
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD 64 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~ 64 (107)
.+++.++..||+.|+.+|++|+.||.+|+.+++.|+|++.|||+||||+|+|+++.
T Consensus 717 ~~~~~~l~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~nlaivF~Ptllr~~d~ 772 (918)
T KOG1453|consen 717 RKLKEVLEQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKNLAIVFAPTLLRPPDG 772 (918)
T ss_pred hhHHHHHHhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCCccccccCcccCCCCC
Confidence 78999999999999999999999999999999999999999999999999998854
No 48
>KOG2200|consensus
Probab=99.38 E-value=4.7e-13 Score=102.91 Aligned_cols=92 Identities=23% Similarity=0.225 Sum_probs=69.1
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChh----hHHHHHH-----Hhhhh
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSW----TCLVFGF-----YKLLG 79 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~----~~~~~~~-----~~~l~ 79 (107)
++++-.+-.||++||.+|+-|+.||++|+.+++.|+||+.|||+|+||+||........ ....... .+.+.
T Consensus 411 qAl~~aillLPDeNReaLktLL~FL~~V~an~e~N~MT~~NlsvcmAPsLF~l~~~~~d~spr~~~~k~~~g~p~~kel~ 490 (674)
T KOG2200|consen 411 QALQLAILLLPDENREALKTLLEFLNDVIANEEENQMTLMNLSVCMAPSLFHLNALKLDSSPRVRQKKSETGKPDQKELN 490 (674)
T ss_pred HHHHHHHHhCCcccHHHHHHHHHHHHHHHHhHhhcccchhhhhhhhcchHHhhccCCCCCCccccccccccCCCchHHHH
Confidence 89999999999999999999999999999999999999999999999999985421110 0000000 11110
Q ss_pred ccccchhhHHHHHHHhccccccC
Q psy5715 80 AHFHVSSGNVRKVSVDKFYCIFT 102 (107)
Q Consensus 80 ~~~~~~~~~vv~~lI~~~~~iF~ 102 (107)
.......++..||.+...+|.
T Consensus 491 --~a~aaa~~l~~mI~y~k~Lf~ 511 (674)
T KOG2200|consen 491 --EALAAAQGLAHMIKYQKLLFT 511 (674)
T ss_pred --HHHHHHHHHHHHHHHHHHHhh
Confidence 111256789999999988885
No 49
>KOG3564|consensus
Probab=99.28 E-value=5.3e-12 Score=95.43 Aligned_cols=76 Identities=33% Similarity=0.387 Sum_probs=60.9
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCC--ChhhHHHHHHHhhhhccccchh
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD--RSWTCLVFGFYKLLGAHFHVSS 86 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~--~~~~~~~~~~~~~l~~~~~~~~ 86 (107)
.++.+.+..||.+||+||.|||-|+++|++ |..+||+..|||.+|||+++..+-. +...+....+. +
T Consensus 455 ~aly~aV~ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~vp~pd~~~~l~dv~~----------q 523 (604)
T KOG3564|consen 455 LALYQAVGELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHAVPNPDQVTMLQDVKT----------Q 523 (604)
T ss_pred HHHHHHHHhhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccCCCCccHhHHHHhhhh----------h
Confidence 889999999999999999999999999888 8899999999999999999995533 23223322222 6
Q ss_pred hHHHHHHHh
Q psy5715 87 GNVRKVSVD 95 (107)
Q Consensus 87 ~~vv~~lI~ 95 (107)
..|++-|++
T Consensus 524 ~rvmkaLle 532 (604)
T KOG3564|consen 524 PRVMKALLE 532 (604)
T ss_pred HHHHHHHHh
Confidence 677777654
No 50
>KOG2710|consensus
Probab=99.23 E-value=1.1e-11 Score=92.89 Aligned_cols=93 Identities=24% Similarity=0.279 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCC-----------CCCccCccccccccccccCCCChhhHHHHHHH
Q psy5715 7 FQLKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVN-----------KMEARNLAIMFGPTLVRAGDDRSWTCLVFGFY 75 (107)
Q Consensus 7 ~~~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~n-----------kM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~ 75 (107)
+...++.++..||++|+.+|.+++.||+.+++|++.| +|++.|||+||+|+++.....+...+...
T Consensus 189 ~~~~l~l~~~llp~~nr~~l~~ll~fL~~~a~~s~d~~~kdg~~~~gnkm~~~nlatIf~P~iL~k~~~~~~~~s~~--- 265 (412)
T KOG2710|consen 189 QLGVLQLLIYLLPKCNRDTLEVLLGFLSVVASHAEDNIGKDGQEVNGNKMTSENLATIFGPNILYKLKGSHKELSVT--- 265 (412)
T ss_pred HHHHHHHHHHhcCccchhHHHHHHhhhhhhhcccccccccccccccCcccchhhhhhhhcchhhhcccCCCcccccc---
Confidence 3388999999999999999999999999999999999 99999999999999999532111110000
Q ss_pred hhhhccccchhhHHHHHHHhccccccC
Q psy5715 76 KLLGAHFHVSSGNVRKVSVDKFYCIFT 102 (107)
Q Consensus 76 ~~l~~~~~~~~~~vv~~lI~~~~~iF~ 102 (107)
..........+..+++.|++|++.+|.
T Consensus 266 ~~~~~s~~~~i~~~~~~~~~N~e~~f~ 292 (412)
T KOG2710|consen 266 GVANESESEAIVNFAQMMIENLEALFQ 292 (412)
T ss_pred cccchhhHHHHHHHHHHhhhhHHHhhc
Confidence 000001112267789999999999998
No 51
>KOG4724|consensus
Probab=99.20 E-value=1.1e-11 Score=96.44 Aligned_cols=92 Identities=17% Similarity=0.116 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccc
Q psy5715 5 QDFQLKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHV 84 (107)
Q Consensus 5 ~d~~~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~ 84 (107)
++...+++++..+||.+|..+|++|...| .+..+|.+|.|+..|||+|.+|+.++....... ....+ +..
T Consensus 184 e~~i~~i~r~~d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla~cv~p~~l~~~~~~s~-e~~k~--------ln~ 253 (741)
T KOG4724|consen 184 EAIISEIERQGDRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLAQCVNPIKLKVLTRTSS-EFGKG--------LNG 253 (741)
T ss_pred HHHHHHHHHHHhhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHHHHhcchhcccccccCh-hhhcc--------ccC
Confidence 33449999999999999999999999999 888999999999999999999999998755443 22222 223
Q ss_pred hhhHHHHHHHhccccccCCCCC
Q psy5715 85 SSGNVRKVSVDKFYCIFTPTVP 106 (107)
Q Consensus 85 ~~~~vv~~lI~~~~~iF~~~~p 106 (107)
...-.++|+|+|+-.||+++.+
T Consensus 254 kv~~l~~flI~nclrifGe~i~ 275 (741)
T KOG4724|consen 254 KVPPLPIFLIVNCLRIFGEDIE 275 (741)
T ss_pred CCCCceeeehhhhHHhhccccc
Confidence 3556889999999999999865
No 52
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=98.90 E-value=3.1e-09 Score=74.45 Aligned_cols=75 Identities=21% Similarity=0.237 Sum_probs=63.6
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhcc-------CCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhcc
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNS-------EVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAH 81 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s-------~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~ 81 (107)
++++-++..||++||..|+.|++|+.+++.+. ..|+| |++..|+|.+++++.-+ ...
T Consensus 149 eAlQl~~lLLP~enRe~Lq~LL~fl~~va~~~~~~L~~~~~nR~---~v~~~Fs~~ii~~~~l~--~~~----------- 212 (235)
T cd04405 149 EALQLCLLLLPPASRRELRRLLRFMARAAKNDMPRLHKEIENRM---LVKQTFSRAILCSKDLD--EGL----------- 212 (235)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCccccccccchHH---HHHHHhhhHhcCccccC--HHH-----------
Confidence 99999999999999999999999999999984 24555 89999999999988332 111
Q ss_pred ccchhhHHHHHHHhccccccCC
Q psy5715 82 FHVSSGNVRKVSVDKFYCIFTP 103 (107)
Q Consensus 82 ~~~~~~~vv~~lI~~~~~iF~~ 103 (107)
...+|.|||+|+.+||.-
T Consensus 213 ----~~~LV~Fmmd~~~~ifkv 230 (235)
T cd04405 213 ----ADLLVLFLMDHHQDIFKV 230 (235)
T ss_pred ----HHHHHHHHHHcchhhhcC
Confidence 367899999999999964
No 53
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=98.70 E-value=1.5e-08 Score=69.81 Aligned_cols=56 Identities=21% Similarity=0.242 Sum_probs=53.2
Q ss_pred HHHHHHHhhc--CHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCC
Q psy5715 9 LKLVLVVHEL--PEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD 64 (107)
Q Consensus 9 ~~l~~~l~~L--P~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~ 64 (107)
++++.++.++ |+.|+.++..++.+|.+|+.|+..|+|+.+||+.+|||.+|..++.
T Consensus 110 ~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~~~~ 167 (198)
T cd04401 110 DAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGKPTG 167 (198)
T ss_pred HHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCCCCc
Confidence 7899999998 8999999999999999999999999999999999999999998754
No 54
>KOG1452|consensus
Probab=98.36 E-value=6.7e-07 Score=65.50 Aligned_cols=54 Identities=22% Similarity=0.311 Sum_probs=51.2
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccC
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAG 62 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~ 62 (107)
+-+-+++..||..++.+|.+++.||..|..+|+.|+|++..||.+|||-||-..
T Consensus 299 kl~l~iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~~~Ls~i~~P~L~~~~ 352 (442)
T KOG1452|consen 299 KLFLAIIDCLERELSKQLNVCLDHLSTVLCSSPHNGLTPTRLSLIFAPLLFFCL 352 (442)
T ss_pred HHHHHHHHHHHHHhhhhHhHHHhhhhHheecCCcCCcCHHHHHHHhhhhHHHhh
Confidence 677889999999999999999999999999999999999999999999998754
No 55
>KOG4271|consensus
Probab=98.24 E-value=7.9e-07 Score=72.08 Aligned_cols=51 Identities=25% Similarity=0.385 Sum_probs=48.9
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCcccccccccc
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLV 59 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll 59 (107)
..+++++..+|+.|+.+++|++.||.+|+....+|.|+..|+++||++.|+
T Consensus 1026 hglr~~~a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~~~~~~~ 1076 (1100)
T KOG4271|consen 1026 HGLREASAKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSICFPTLLM 1076 (1100)
T ss_pred cchhhHhhhcCchHHHHHHHHHHHHhhhcccccccccccccccccccchHH
Confidence 677899999999999999999999999999999999999999999999887
No 56
>KOG1449|consensus
Probab=98.22 E-value=1.6e-07 Score=72.83 Aligned_cols=71 Identities=24% Similarity=0.328 Sum_probs=53.7
Q ss_pred HHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHH---HHHHHhhhhccccchhhHHHHHHHhccccccCCCC
Q psy5715 30 LQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCL---VFGFYKLLGAHFHVSSGNVRKVSVDKFYCIFTPTV 105 (107)
Q Consensus 30 ~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~vv~~lI~~~~~iF~~~~ 105 (107)
++||..|+.++....|-+.|||+||||||+|.++.+..-+. +.-..-.+ ..|..|++++..|.++||.++.
T Consensus 1 ~rHls~va~~~s~tnmhA~Nla~vwapnllrskeies~lcs~~~GdaAf~av-----q~qsvV~EfilnhvDvlF~~~a 74 (670)
T KOG1449|consen 1 HRHLSSVALGPSRTNMHAINLAEVWAPNLLRSKEIESSLCSHLWGDAAFSAV-----QAQSVVSEFILNHVDVLFLPTA 74 (670)
T ss_pred CcchhhhhccchhhHHHHhhHHHhhhhhhHHHHHHHHhhhccccccHHHHHH-----HhhhhhhhhcccccceecCCcC
Confidence 47999999999999999999999999999997754443333 11111111 1167799999999999998864
No 57
>KOG4370|consensus
Probab=97.55 E-value=4.8e-05 Score=57.60 Aligned_cols=50 Identities=16% Similarity=0.347 Sum_probs=47.5
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccc
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTL 58 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~l 58 (107)
+.++.++..||++||.++.|+.-|...|....-.|||++.|++++.+|++
T Consensus 204 ~efq~llk~Lp~cNyll~swl~lH~d~vi~~e~~~Kln~q~i~i~lspt~ 253 (514)
T KOG4370|consen 204 NEFQFLLKILPKCNYLLYSWLNLHKDKVIEEEYCLKLNKQQIFINLSPTE 253 (514)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhcchhheeeecchHH
Confidence 77889999999999999999999999999989999999999999999985
No 58
>KOG3565|consensus
Probab=97.38 E-value=0.00027 Score=56.36 Aligned_cols=55 Identities=31% Similarity=0.462 Sum_probs=51.4
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCC
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD 63 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~ 63 (107)
..++.++..+|..+...++++..|+...+..++.|.|++.|+|+||||++...++
T Consensus 313 ~~~~~~L~~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~~e 367 (640)
T KOG3565|consen 313 LHVRKLLKSLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPVPE 367 (640)
T ss_pred hhhhhhhhccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccCcc
Confidence 5678899999999999999999999999999999999999999999999987663
No 59
>KOG1449|consensus
Probab=90.65 E-value=0.078 Score=42.06 Aligned_cols=82 Identities=17% Similarity=0.372 Sum_probs=57.9
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCC-hhhHHHHHHHhhhhccccchhh
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDR-SWTCLVFGFYKLLGAHFHVSSG 87 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~-~~~~~~~~~~~~l~~~~~~~~~ 87 (107)
+..+--....+++|+.+-++|..|+.+...-. .+++|+|.||++|++..- ..+....+ ... .+.
T Consensus 308 ~~~~~~~~~~se~~~r~a~~lse~ft~~~~~~-------~s~~I~~~~~~~r~pptL~~~~~h~~~-------~~~-~~~ 372 (670)
T KOG1449|consen 308 ESLRFSLETMSEAHYRTAKFLSEHFTRLCKSK-------KSLAIVWSPNLFRPPPTLNGADTHLLS-------GLN-VHT 372 (670)
T ss_pred eeeccccccCCcccchHhhhhchhhhhhcccc-------ccceeecCCCCCCCCCCCCchhhhhcc-------cCC-cce
Confidence 44445567889999999999999999988633 799999999999987521 11111110 000 145
Q ss_pred HHHHHHHhccccccCCCC
Q psy5715 88 NVRKVSVDKFYCIFTPTV 105 (107)
Q Consensus 88 ~vv~~lI~~~~~iF~~~~ 105 (107)
.+..+-|++.+..|+.++
T Consensus 373 ~~~~~~~e~s~~~~~~~i 390 (670)
T KOG1449|consen 373 AICDFFIENSESLFVNDI 390 (670)
T ss_pred eecccchhhhhhhhhccc
Confidence 567788999999998765
No 60
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=89.97 E-value=0.39 Score=36.94 Aligned_cols=56 Identities=20% Similarity=0.185 Sum_probs=47.8
Q ss_pred HHHHHHHh-hcC-HHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCC
Q psy5715 9 LKLVLVVH-ELP-EHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD 64 (107)
Q Consensus 9 ~~l~~~l~-~LP-~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~ 64 (107)
.+...++- .|| +.|..++.-++.+|..|+.|+..|+|+...|+-.+|+=.|..+..
T Consensus 112 ~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~~~~~ 169 (420)
T PF08101_consen 112 DAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFGHPDF 169 (420)
T ss_pred HHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCCCCCc
Confidence 67777774 453 777889999999999999999999999999999999988886643
No 61
>KOG1453|consensus
Probab=86.94 E-value=0.4 Score=40.24 Aligned_cols=54 Identities=24% Similarity=0.266 Sum_probs=46.4
Q ss_pred HHHHHHHh----hcCHHHHHHHHHHHHHHHHhhhccCCC-CCCc-cCccccccc----cccccC
Q psy5715 9 LKLVLVVH----ELPEHHFQTLKYILQHLKRVVDNSEVN-KMEA-RNLAIMFGP----TLVRAG 62 (107)
Q Consensus 9 ~~l~~~l~----~LP~~n~~~L~~l~~~L~~v~~~s~~n-kM~~-~nLaivf~P----~ll~~~ 62 (107)
..+..... .+|.....++.++..|+.+|...-.+| .|+. +||+.+|++ +.+..+
T Consensus 605 ~~l~~~~~~e~~~vP~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~ 668 (918)
T KOG1453|consen 605 VSLSELARYEPSTVPFILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTP 668 (918)
T ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCC
Confidence 45677777 999999999999999999999988888 8887 899999999 455544
No 62
>KOG4271|consensus
Probab=85.08 E-value=1 Score=37.89 Aligned_cols=96 Identities=19% Similarity=0.143 Sum_probs=59.5
Q ss_pred HHHHHHHhh--cCHHHHH----HHHHHHHHHHHhhhccCCCCCCcc-Ccccccccc-ccccC--------CCC----hhh
Q psy5715 9 LKLVLVVHE--LPEHHFQ----TLKYILQHLKRVVDNSEVNKMEAR-NLAIMFGPT-LVRAG--------DDR----SWT 68 (107)
Q Consensus 9 ~~l~~~l~~--LP~~n~~----~L~~l~~~L~~v~~~s~~nkM~~~-nLaivf~P~-ll~~~--------~~~----~~~ 68 (107)
+..+.++.. -|.+|+. ++..+.--+..+..++..|.|++. -.+.|.+|. +++.+ +.+ ..+
T Consensus 477 s~~~aices~~~p~pnnk~~~d~~LRivm~m~~g~~~s~~ni~n~~~~s~aCkS~~llL~~pI~~~krrie~~~f~v~~d 556 (1100)
T KOG4271|consen 477 SVLKAICESRNSPEPNNKDLADLDLRIVMCMMCGDPFSADNILNPVLASAACKSPHLLLRLPIGAGKRRIELSSFDVRKD 556 (1100)
T ss_pred HHHHHHHhhcCCCccccchhHHHHHHHHHHHhcCCchhhhhhcChhhHHHHhcChHHHHhcccccccceecccccccccc
Confidence 556666766 7888777 666777777788899999999998 899999995 66633 111 001
Q ss_pred HHHHHHHhhhhccccc--hhhHHHHHHHhccccccCCC
Q psy5715 69 CLVFGFYKLLGAHFHV--SSGNVRKVSVDKFYCIFTPT 104 (107)
Q Consensus 69 ~~~~~~~~~l~~~~~~--~~~~vv~~lI~~~~~iF~~~ 104 (107)
-...+..-.+...-.. ..+.+|..+++.|..||.+.
T Consensus 557 e~vh~~~~~~sA~~~An~~aQ~iI~~~l~D~~si~~~~ 594 (1100)
T KOG4271|consen 557 ELVHGYIVLYSAKRKANMEAQDIIPVALTDYASIFLDN 594 (1100)
T ss_pred hhHHHHHHHHHHHhhccchHhhhhhHHhhcchhhhccc
Confidence 1111000011000011 14567778899999998763
No 63
>KOG4724|consensus
Probab=62.22 E-value=2.4 Score=34.49 Aligned_cols=57 Identities=19% Similarity=0.117 Sum_probs=49.4
Q ss_pred hHHHHHHH--------HHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccC
Q psy5715 6 DFQLKLVL--------VVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAG 62 (107)
Q Consensus 6 d~~~~l~~--------~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~ 62 (107)
|+.++++. +....|..+....+....-...++.+++.+.|+..|++.|..|+.....
T Consensus 525 drtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~nse~~s~dsSn~~~csrpn~~tvd 589 (741)
T KOG4724|consen 525 DRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSENSEETSNDSSNPGFCSRPNALTVD 589 (741)
T ss_pred HHHHHHHhhcCCcccccccCCCCCcccccccccccceecccccccccccccccCCCCCccccchh
Confidence 33388888 8889999999888888888888889999999999999999999998865
No 64
>PRK15361 pathogenicity island 2 effector protein SseD; Provisional
Probab=46.99 E-value=15 Score=25.42 Aligned_cols=19 Identities=37% Similarity=0.718 Sum_probs=14.6
Q ss_pred CCccCccccc-cccccccCC
Q psy5715 45 MEARNLAIMF-GPTLVRAGD 63 (107)
Q Consensus 45 M~~~nLaivf-~P~ll~~~~ 63 (107)
|.+.|.|.|+ +|+|+.|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (195)
T PRK15361 1 MEASNVALVLPAPSLLTPSS 20 (195)
T ss_pred CCccceeeeecCccccCCCC
Confidence 5678888765 899998764
No 65
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=42.74 E-value=57 Score=20.02 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.9
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLK 34 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~ 34 (107)
+++..+...+|.. ..+|.|+...+.
T Consensus 86 ~~I~~l~~~~~~e-~~~l~~i~~~~~ 110 (113)
T PF02520_consen 86 EAIDALRKQYPEE-VDTLFFIRKEIE 110 (113)
T ss_pred HHHHHHHHHCCHH-HHHHHHHHHHHh
Confidence 8999999999999 999999877654
No 66
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=41.91 E-value=62 Score=18.44 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=24.0
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhh
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVD 38 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~ 38 (107)
+.++.....|++..+.+..|++.+...+..
T Consensus 5 ~~i~~~~~~ls~~e~~Ia~yil~~~~~~~~ 34 (77)
T PF01418_consen 5 EKIRSQYNSLSPTEKKIADYILENPDEIAF 34 (77)
T ss_dssp HHHHHHGGGS-HHHHHHHHHHHH-HHHHCT
T ss_pred HHHHHHHhhCCHHHHHHHHHHHhCHHHHHH
Confidence 466777889999999999999999998863
No 67
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=41.78 E-value=36 Score=17.04 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=25.4
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhc
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDN 39 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~ 39 (107)
+-+..++..||......++..++.++.+.+.
T Consensus 9 ~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 9 EILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 6788899999999999999999999888763
No 68
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=41.16 E-value=45 Score=17.26 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=15.7
Q ss_pred HHHHHHHhhcCHHHHHHHHH
Q psy5715 9 LKLVLVVHELPEHHFQTLKY 28 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~ 28 (107)
+.+.+.+..||+..+.++..
T Consensus 2 ~~l~~~l~~L~~~~r~i~~l 21 (54)
T PF08281_consen 2 EALQQALAQLPERQREIFLL 21 (54)
T ss_dssp HHHHHHHHCS-HHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHH
Confidence 46889999999999887754
No 69
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=40.31 E-value=60 Score=17.36 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=17.5
Q ss_pred HHHHHhhcC---HHHHHHHHHHHHHHH
Q psy5715 11 LVLVVHELP---EHHFQTLKYILQHLK 34 (107)
Q Consensus 11 l~~~l~~LP---~~n~~~L~~l~~~L~ 34 (107)
+.++...+| +.....|..++++|.
T Consensus 25 ~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 25 LSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 556777776 566778888888873
No 70
>PRK12303 tumor necrosis factor alpha-inducing protein; Reviewed
Probab=39.78 E-value=32 Score=22.52 Aligned_cols=58 Identities=28% Similarity=0.344 Sum_probs=36.2
Q ss_pred CCCCccCcccccccc------ccccCCCChhhHHHHHHHhhhhccccchhhHHHHHHHhccccccCCCCCC
Q psy5715 43 NKMEARNLAIMFGPT------LVRAGDDRSWTCLVFGFYKLLGAHFHVSSGNVRKVSVDKFYCIFTPTVPY 107 (107)
Q Consensus 43 nkM~~~nLaivf~P~------ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vv~~lI~~~~~iF~~~~py 107 (107)
..|+...|++-+.|+ |+|...-+. +....+..+.-. .++.|.+|....++||.+..-|
T Consensus 120 slmnvdrlgiyinpnneevfalvrargfdk-dalseglhkmsl------dnqavsilvakveeifkdsiny 183 (192)
T PRK12303 120 SLMNVDRLGIYINPNNEEVFALVRARGFDK-DALSEGLHKMSL------DNQAVSILVAKVEEIFKDSINY 183 (192)
T ss_pred HhhcchheeeeeCCCcHHHHHHHHHhcCCH-HHHhhhHHhccc------cchhHHHHHHHHHHHHhccccc
Confidence 578888999988887 333332111 222222222211 4677888999999999887655
No 71
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=38.07 E-value=49 Score=15.61 Aligned_cols=33 Identities=15% Similarity=0.356 Sum_probs=27.7
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccC
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSE 41 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~ 41 (107)
+-+..++..|+......++..++.++.+.....
T Consensus 4 ~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~ 36 (41)
T smart00256 4 EILEEILSKLPPKDLLRLRKVSRRWRSLIDSHD 36 (41)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChh
Confidence 456778999999999999999999999887543
No 72
>PF08525 OapA_N: Opacity-associated protein A N-terminal motif; InterPro: IPR013731 This domain is found in the Haemophilus influenzae opacity-associated protein (OapA). It is required for efficient nasopharyngeal mucosal colonisation, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [, ]. This motif occurs at the N terminus of these proteins. It contains a conserved histidine followed by a run of hydrophobic residues. Many of the proteins in this entry are unassigned peptidases belonging to MEROPS peptidase family M23B.
Probab=37.20 E-value=34 Score=16.21 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=15.1
Q ss_pred HHhhcCHHHHHHHHHHHHHH
Q psy5715 14 VVHELPEHHFQTLKYILQHL 33 (107)
Q Consensus 14 ~l~~LP~~n~~~L~~l~~~L 33 (107)
....||+.|+..+..+...+
T Consensus 2 ~~~~LP~~Hr~~l~~l~~v~ 21 (30)
T PF08525_consen 2 WFNPLPKLHRRALIALSAVV 21 (30)
T ss_pred ccccCCHHHHHHHHHHHHHH
Confidence 35689999999887776544
No 73
>PF07964 Red1: Rec10 / Red1; InterPro: IPR012491 Rec10 / Red1 is involved in meiotic recombination and chromosome segregation during homologous chromosome formation. This protein localises to the synaptonemal complex in Saccharomyces cerevisiae and the analogous structures (linear elements) in Schizosaccharomyces pombe []. This family is currently only found in fungi. ; GO: 0007059 chromosome segregation, 0007131 reciprocal meiotic recombination
Probab=34.58 E-value=75 Score=26.44 Aligned_cols=83 Identities=14% Similarity=0.301 Sum_probs=49.3
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhHH
Q psy5715 10 KLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGNV 89 (107)
Q Consensus 10 ~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v 89 (107)
.+..++..+ ..+..+-||+.+|+.+......+ .++++..|.+ |..+.-.........+-+-+.| .-..+
T Consensus 28 ~ig~lldni--~DfQl~n~lieLLs~cF~rk~~~-----~~~v~~~p~l-W~~~~knk~ff~~~~Yp~r~K~---g~~~~ 96 (706)
T PF07964_consen 28 NIGWLLDNI--KDFQLLNYLIELLSNCFPRKALS-----GPGVSRPPQL-WQEEEKNKSFFNSQLYPFRGKH---GDQQT 96 (706)
T ss_pred HhHHHHhcc--hhHHHHHHHHHHHHhccchhhcC-----CcceeeCCcc-cCchhHHHhhhccccccccccc---chHHH
Confidence 344455543 56778889999999988766665 7889999998 7432222222222111111111 02468
Q ss_pred HHHHHhccccccCC
Q psy5715 90 RKVSVDKFYCIFTP 103 (107)
Q Consensus 90 v~~lI~~~~~iF~~ 103 (107)
++|+.++|...|..
T Consensus 97 ~qfi~~~F~~~l~n 110 (706)
T PF07964_consen 97 MQFIWKNFGSFLTN 110 (706)
T ss_pred HHHHHHHHHhhhhc
Confidence 89998887666543
No 74
>PF06304 DUF1048: Protein of unknown function (DUF1048); InterPro: IPR008316 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2O3L_B 2HH6_A 2O4T_A.
Probab=32.76 E-value=1.2e+02 Score=18.72 Aligned_cols=30 Identities=23% Similarity=0.056 Sum_probs=25.8
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhh
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVD 38 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~ 38 (107)
.++..=+..||+.++....-+-++|..++.
T Consensus 11 k~~~aR~k~LP~dY~~ay~~i~~Yl~~~~~ 40 (103)
T PF06304_consen 11 KAFEARVKALPEDYRIAYKAIQKYLWYFGP 40 (103)
T ss_dssp HHHHHHHHCS-HHHHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhCC
Confidence 677777899999999999999999998874
No 75
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=30.05 E-value=46 Score=19.79 Aligned_cols=16 Identities=6% Similarity=0.218 Sum_probs=13.1
Q ss_pred hHHHHHHHHHhhcCHH
Q psy5715 6 DFQLKLVLVVHELPEH 21 (107)
Q Consensus 6 d~~~~l~~~l~~LP~~ 21 (107)
.++.++++++++||+.
T Consensus 59 RrE~EV~~LLeKippd 74 (80)
T PF08149_consen 59 RREREVRSLLEKIPPD 74 (80)
T ss_pred HhHHHHHHHHHhCCcc
Confidence 3448999999999975
No 76
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=28.76 E-value=64 Score=21.67 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHHHHhhhccCCC-CCCccCcccccccc
Q psy5715 19 PEHHFQTLKYILQHLKRVVDNSEVN-KMEARNLAIMFGPT 57 (107)
Q Consensus 19 P~~n~~~L~~l~~~L~~v~~~s~~n-kM~~~nLaivf~P~ 57 (107)
++.-+.+|..+...+..++.....- +|.-.++.++++|.
T Consensus 124 ~e~g~~ll~~i~~~l~~~~~~e~~p~~~eG~~~~~~l~P~ 163 (165)
T TIGR00168 124 IELGEKVLDRFYTDVADVAEVEKPPTKSEGRMMSMLLAPK 163 (165)
T ss_pred HHHHHHHHHHHHHHhhhhhheecCcccccCCEEEEEEEeC
Confidence 4556788999999999998877666 89999999999996
No 77
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=27.98 E-value=95 Score=23.62 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.6
Q ss_pred hhcCHHHHHHHHHHHHHHHHhhhc
Q psy5715 16 HELPEHHFQTLKYILQHLKRVVDN 39 (107)
Q Consensus 16 ~~LP~~n~~~L~~l~~~L~~v~~~ 39 (107)
..+|.....+|++|++++++...+
T Consensus 67 ~~i~~~r~~llK~lLk~l~~~~~~ 90 (379)
T PF06025_consen 67 YSISYQRQQLLKSLLKFLSHAMQH 90 (379)
T ss_pred cccCHHHHHHHHHHHHHHHHHhcc
Confidence 468899999999999999999983
No 78
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=27.46 E-value=1.1e+02 Score=21.67 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=26.8
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhh
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVD 38 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~ 38 (107)
+.+++....|++..+.+..|++.|...|..
T Consensus 5 ~~i~~~~~~Lt~~e~~Ia~yil~n~~~v~~ 34 (284)
T PRK11302 5 EKIQSRLEHLSKSERKVAEVILASPQTAIH 34 (284)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHhCHHHHHh
Confidence 567888899999999999999999988764
No 79
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=27.26 E-value=76 Score=15.91 Aligned_cols=30 Identities=13% Similarity=0.249 Sum_probs=25.1
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhh
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVD 38 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~ 38 (107)
+-+..++..||......+...++.+++++.
T Consensus 7 Eil~~If~~L~~~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 7 EILLEIFSYLDPRDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp HHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence 567788899999999999999999999885
No 80
>PF07527 Hairy_orange: Hairy Orange; InterPro: IPR003650 This domain confers specificity among members of the Hairy/E(SPL) family. HES-2 (hairy and enhancer of split 2) is a transcription factor, and the hairy protein is a pair-rule protein that regulates embryonic segmentation and adult bristle patterning. These proteins are transcriptional repressors of genes that require the BHLH protein for their transcription.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DB7_A.
Probab=25.15 E-value=1.1e+02 Score=15.46 Aligned_cols=30 Identities=10% Similarity=0.121 Sum_probs=19.8
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhh
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVD 38 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~ 38 (107)
.++.+.+...|...-.+-..|+.||.....
T Consensus 12 ~Ev~~fL~~~~~~~~~~~~rLl~HL~~~~~ 41 (43)
T PF07527_consen 12 NEVSRFLSSVEGVDPGVRARLLSHLQSCLN 41 (43)
T ss_dssp HHHHHHHHHTS---THHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHHhc
Confidence 455556677777767888899999987653
No 81
>PF00336 DNA_pol_viral_C: DNA polymerase (viral) C-terminal domain; InterPro: IPR001462 This domain is at the C terminus of hepatitis B-type viruses P proteins and represents a functional domain that controls the RNase H activities of the protein. The domain is always associated with IPR000201 from INTERPRO and .; GO: 0004523 ribonuclease H activity
Probab=23.35 E-value=97 Score=21.99 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=28.9
Q ss_pred hhHH-HHHHHHHhhcC---HHHHHHHHHHHHHHHHhhhcc
Q psy5715 5 QDFQ-LKLVLVVHELP---EHHFQTLKYILQHLKRVVDNS 40 (107)
Q Consensus 5 ~d~~-~~l~~~l~~LP---~~n~~~L~~l~~~L~~v~~~s 40 (107)
||.. ++++++++++| +....+-+.+.+||.-++-.-
T Consensus 8 qdh~~~kik~~~rKlpvnrpiDwKvcQRivGlLgF~aPFT 47 (245)
T PF00336_consen 8 QDHIVQKIKQCFRKLPVNRPIDWKVCQRIVGLLGFAAPFT 47 (245)
T ss_pred HHHHHHHHHHHHhcCCCCCCcchHHHHhhhhhhhcccccc
Confidence 4445 99999999999 567788899999998887543
No 82
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=22.57 E-value=1.8e+02 Score=17.75 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=23.5
Q ss_pred hhcCHHHHHHHHHHHHHHHHhhhccCC
Q psy5715 16 HELPEHHFQTLKYILQHLKRVVDNSEV 42 (107)
Q Consensus 16 ~~LP~~n~~~L~~l~~~L~~v~~~s~~ 42 (107)
...|+.=|.+..-++.|+.++..++..
T Consensus 65 ~~IPeelY~vVAEifafi~~~~~~~~~ 91 (92)
T COG2257 65 DEIPEELYEVVAEIFAFIYEVDNNVQK 91 (92)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHccCCC
Confidence 468999999999999999999887653
No 83
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=20.81 E-value=1.2e+02 Score=21.46 Aligned_cols=28 Identities=11% Similarity=0.090 Sum_probs=24.3
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhhh
Q psy5715 11 LVLVVHELPEHHFQTLKYILQHLKRVVD 38 (107)
Q Consensus 11 l~~~l~~LP~~n~~~L~~l~~~L~~v~~ 38 (107)
+++....|++..+.+..|++.+...|..
T Consensus 3 i~~~~~~Lt~~e~~ia~yil~n~~~v~~ 30 (278)
T PRK11557 3 IRQRYPGLAQSDRKLADYLLLQPDTARH 30 (278)
T ss_pred hhHhhhhCCHHHHHHHHHHHhCHHHHHh
Confidence 5677788999999999999999988763
No 84
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=20.48 E-value=1.4e+02 Score=17.92 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=26.7
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhh
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVD 38 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~ 38 (107)
+++|+++..++..+...-.++..+|..+.+
T Consensus 46 dkmRkLld~v~akG~~~k~~F~~iL~e~~~ 75 (85)
T cd08324 46 DKVRKILDLVQSKGEEVSEYFLYLLQQLAD 75 (85)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 889999999999999999999999988875
No 85
>TIGR03209 P21_Cbot clostridium toxin-associated regulator BotR. Similarly, tetanus toxin production of Clostridium tetani is regulated by TetR which is a very close relative of BotR. Both BotR and TetR are members of the TIGR02937 subfamily of sigma-70 RNA polymerase sigma factors. Functional complementation experiments have been done for botR and tetR in highly transformable strain of Clostridium perfringens host cells to assess functional interchangeability of sigma factors and it has been confirmed that they are interchangeable in vivo.
Probab=20.48 E-value=1.8e+02 Score=18.02 Aligned_cols=20 Identities=10% Similarity=0.225 Sum_probs=16.4
Q ss_pred HHHHHHHhhcCHHHHHHHHH
Q psy5715 9 LKLVLVVHELPEHHFQTLKY 28 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~ 28 (107)
..+.+++.+||+..+.++..
T Consensus 99 ~~l~~~l~~Lp~~~r~v~~l 118 (142)
T TIGR03209 99 FEFNDLISILPNKQKKIIYM 118 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHH
Confidence 56888999999988887654
Done!