Query psy5715
Match_columns 107
No_of_seqs 164 out of 1020
Neff 8.3
Searched_HMMs 29240
Date Sat Aug 17 00:47:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5715.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5715hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2osa_A N-chimaerin; RHO-GAP, G 99.9 2.5E-24 8.4E-29 147.1 4.8 83 9-101 120-202 (202)
2 3byi_A RHO GTPase activating p 99.9 2.1E-24 7.1E-29 148.6 4.1 85 9-104 130-214 (214)
3 1f7c_A Rhogap protein; GTPase 99.9 4.5E-24 1.5E-28 148.6 3.6 86 9-105 135-220 (231)
4 3iug_A RHO/CDC42/RAC GTPase-ac 99.9 4.1E-24 1.4E-28 148.5 2.7 92 9-105 132-223 (229)
5 2ee4_A RHO GTPase activating p 99.9 3.1E-24 1.1E-28 147.3 1.6 87 9-106 121-207 (209)
6 3msx_B RHO GTPase-activating p 99.9 1.3E-23 4.5E-28 143.3 4.6 84 9-101 118-201 (201)
7 1pbw_A Rhogap domain, phosphat 99.9 1.5E-23 5E-28 144.7 4.8 82 9-104 118-201 (216)
8 3fk2_A Glucocorticoid receptor 99.9 1.4E-23 4.9E-28 147.3 4.2 84 9-103 162-245 (246)
9 1tx4_A P50-rhogap; complex (GT 99.9 2E-23 7E-28 142.2 2.8 81 9-101 118-198 (198)
10 1ow3_A RHO-GTPase-activating p 99.9 8.6E-23 3E-27 143.0 4.3 85 9-105 154-238 (242)
11 2ovj_A Mgcracgap, RAC GTPase-a 99.9 2.3E-22 7.8E-27 137.4 6.2 85 9-104 111-197 (201)
12 3cxl_A N-chimerin; SH2, RHO-GA 99.8 5.3E-22 1.8E-26 149.7 4.5 83 9-101 381-463 (463)
13 3eap_A RHO GTPase-activating p 99.8 9.6E-22 3.3E-26 139.7 5.2 87 9-103 172-259 (271)
14 3kuq_A RHO GTPase-activating p 99.8 3.1E-20 1.1E-24 129.0 3.7 91 8-100 128-228 (228)
15 2xs6_A Phosphatidylinositol 3- 99.8 4E-21 1.4E-25 132.6 -1.4 89 13-105 125-213 (214)
16 3qis_A Inositol polyphosphate 99.7 3.9E-18 1.3E-22 125.6 3.1 57 9-65 284-340 (366)
17 1i96_V Translation initiation 42.5 17 0.00059 21.0 2.3 39 19-57 47-85 (89)
18 3t72_q RNA polymerase sigma fa 40.9 29 0.00098 20.2 3.1 20 9-28 11-30 (99)
19 2ife_A Protein (translation in 37.1 26 0.0009 20.7 2.5 39 19-57 58-97 (100)
20 3iwf_A Transcription regulator 36.1 46 0.0016 19.5 3.6 37 9-51 6-42 (107)
21 2o3f_A Putative HTH-type trans 32.3 58 0.002 19.1 3.6 37 9-51 10-46 (111)
22 1fs1_A SKP2 F-BOX, cyclin A/CD 25.1 57 0.0019 16.0 2.3 31 9-39 15-45 (53)
23 1s7o_A Hypothetical UPF0122 pr 22.9 61 0.0021 19.1 2.5 38 9-57 13-51 (113)
24 3oak_C Transcription elongatio 22.2 18 0.00063 16.8 -0.0 15 93-107 9-23 (31)
No 1
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=99.90 E-value=2.5e-24 Score=147.14 Aligned_cols=83 Identities=34% Similarity=0.454 Sum_probs=73.0
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
++++.++.+||++|+.+|+||+.||++|+++++.|||+++|||+||||+|+|++..+.......... ++.
T Consensus 120 ~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~NLa~vf~P~Ll~~~~~~~~~~~~~~~~----------~~~ 189 (202)
T 2osa_A 120 ETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRY----------QRL 189 (202)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH----------HHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHccccCCCCCccHHHHHHHHHH----------HHH
Confidence 8899999999999999999999999999999999999999999999999999987654332222111 688
Q ss_pred HHHHHHhcccccc
Q psy5715 89 VRKVSVDKFYCIF 101 (107)
Q Consensus 89 vv~~lI~~~~~iF 101 (107)
+|++||+||++||
T Consensus 190 vve~LI~~~~~iF 202 (202)
T 2osa_A 190 VVELLIKNEDILF 202 (202)
T ss_dssp HHHHHHHTHHHHC
T ss_pred HHHHHHHcccccC
Confidence 9999999999998
No 2
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=99.89 E-value=2.1e-24 Score=148.64 Aligned_cols=85 Identities=25% Similarity=0.446 Sum_probs=72.7
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
++++.++.+||++|+.+|+||+.||++|+++++.|||+++|||+||||+|+|++.++.. +..... .++.
T Consensus 130 ~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLa~vf~P~Ll~~~~~~~~-~~~~~~----------~~~~ 198 (214)
T 3byi_A 130 EAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVFGPTLLRAENETGN-MAIHMV----------YQNQ 198 (214)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHCCTTSSSC-HHHHHH----------HHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcccCCCCCHHHhHHHhccccCCCCCccHH-HHHHHH----------HHHH
Confidence 88999999999999999999999999999999999999999999999999998865432 211111 1688
Q ss_pred HHHHHHhccccccCCC
Q psy5715 89 VRKVSVDKFYCIFTPT 104 (107)
Q Consensus 89 vv~~lI~~~~~iF~~~ 104 (107)
+|++||+||++||+++
T Consensus 199 vve~LI~~~~~iF~~d 214 (214)
T 3byi_A 199 IAELMLSEYSKIFGSE 214 (214)
T ss_dssp HHHHHHHTHHHHHC--
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999999999875
No 3
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1
Probab=99.89 E-value=4.5e-24 Score=148.61 Aligned_cols=86 Identities=29% Similarity=0.469 Sum_probs=72.8
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
++++.++.+||++|+.+|+||+.||++|+++++.|||+++|||+||||+|+|++.++...+.... .++.
T Consensus 135 ~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~-----------~~~~ 203 (231)
T 1f7c_A 135 SEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQEETVAAIMDIK-----------FQNI 203 (231)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHSCC---CCSGGGGHH-----------HHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhccccCCCCcccHHHHHHHH-----------HHHH
Confidence 88999999999999999999999999999999999999999999999999998865443322211 1678
Q ss_pred HHHHHHhccccccCCCC
Q psy5715 89 VRKVSVDKFYCIFTPTV 105 (107)
Q Consensus 89 vv~~lI~~~~~iF~~~~ 105 (107)
+|++||+||++||+...
T Consensus 204 vve~LI~~~~~iF~~~~ 220 (231)
T 1f7c_A 204 VIEILIENHEKIFNTVP 220 (231)
T ss_dssp HHHHHHHTHHHHHHSCC
T ss_pred HHHHHHHHHHHhCCCCC
Confidence 99999999999998754
No 4
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=99.88 E-value=4.1e-24 Score=148.52 Aligned_cols=92 Identities=24% Similarity=0.414 Sum_probs=68.4
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
++++.++.+||++|+.+|+||+.||++|+++++.|||++.|||+||||+|+|+++.+........... ....++.
T Consensus 132 ~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~-----~~~~~~~ 206 (229)
T 3iug_A 132 IKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIESACFSGTAAFM-----EVRIQSV 206 (229)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHCCC------------------------CHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCChHHHHHHHhccccCCCcccccccchHHHHH-----HHHHHHH
Confidence 88999999999999999999999999999999999999999999999999998854322111100000 0112678
Q ss_pred HHHHHHhccccccCCCC
Q psy5715 89 VRKVSVDKFYCIFTPTV 105 (107)
Q Consensus 89 vv~~lI~~~~~iF~~~~ 105 (107)
+|++||+||++||+++.
T Consensus 207 vve~LI~~~~~iF~~~~ 223 (229)
T 3iug_A 207 VVEFILNHVDVLFSGRI 223 (229)
T ss_dssp HHHHHHHTHHHHTC---
T ss_pred HHHHHHHhHHHhCCCcH
Confidence 99999999999999875
No 5
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=99.88 E-value=3.1e-24 Score=147.31 Aligned_cols=87 Identities=23% Similarity=0.311 Sum_probs=74.4
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
++++.++.+||++|+.+|+||+.||++|+++++.|||+++|||+||||+|+|++.++...+... ..+..
T Consensus 121 ~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLaivf~P~L~~~~~~~~~~l~~~-----------~~~~~ 189 (209)
T 2ee4_A 121 HALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMRPDFENREFLSTT-----------KIHQS 189 (209)
T ss_dssp HHHHHHTTTSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHSCCCCCSSCCSCCC-----------TTHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHhcccccCCCCccHHHHHHh-----------HHHHH
Confidence 8899999999999999999999999999999999999999999999999999876543211110 12578
Q ss_pred HHHHHHhccccccCCCCC
Q psy5715 89 VRKVSVDKFYCIFTPTVP 106 (107)
Q Consensus 89 vv~~lI~~~~~iF~~~~p 106 (107)
+|++||+||++||+++.+
T Consensus 190 vve~LI~~~~~iF~~~~~ 207 (209)
T 2ee4_A 190 VVETFIQQCQFFFYNGEI 207 (209)
T ss_dssp HHHHHHHTHHHHTTCCCC
T ss_pred HHHHHHHhhHHHcCCCCC
Confidence 999999999999997653
No 6
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=99.88 E-value=1.3e-23 Score=143.27 Aligned_cols=84 Identities=20% Similarity=0.276 Sum_probs=71.6
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
+.++.++.+||++|+.+|+||+.||++|+++++.|||+++|||+||||+|+|++.......... .. ...+.
T Consensus 118 ~~~~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~vf~P~ll~~~~~~~~~~~~~-~~--------~~~~~ 188 (201)
T 3msx_B 118 NTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSILWPPASSSPELENE-FT--------KKVSL 188 (201)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHCCCCTTSCHHHHHH-HH--------HHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCChhhhhhhhhccccCCCCCCChHHHHH-HH--------HHHHH
Confidence 8999999999999999999999999999999999999999999999999999986544332211 11 11456
Q ss_pred HHHHHHhcccccc
Q psy5715 89 VRKVSVDKFYCIF 101 (107)
Q Consensus 89 vv~~lI~~~~~iF 101 (107)
++++||+||++||
T Consensus 189 iv~~LI~~~~~IF 201 (201)
T 3msx_B 189 LIQFLIENCLRIF 201 (201)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHhhHhhC
Confidence 7999999999998
No 7
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=99.88 E-value=1.5e-23 Score=144.70 Aligned_cols=82 Identities=23% Similarity=0.334 Sum_probs=68.9
Q ss_pred HHHHHHHh--hcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchh
Q psy5715 9 LKLVLVVH--ELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSS 86 (107)
Q Consensus 9 ~~l~~~l~--~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (107)
++++.++. +||+.|+.+|+||+.||++|+++++.|||+++|||+||||+|+|++..+.... ..+
T Consensus 118 ~~l~~ll~~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivf~P~Ll~~~~~~~~~~--------------~~~ 183 (216)
T 1pbw_A 118 QLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFSAASSDNT--------------ENL 183 (216)
T ss_dssp HHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHTCSSCCHHHH--------------HHH
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHhhhcCCCCCCchhhh--------------HHH
Confidence 88999999 99999999999999999999999999999999999999999999987654311 117
Q ss_pred hHHHHHHHhccccccCCC
Q psy5715 87 GNVRKVSVDKFYCIFTPT 104 (107)
Q Consensus 87 ~~vv~~lI~~~~~iF~~~ 104 (107)
+.+|++||+||++||+..
T Consensus 184 ~~vve~LI~~~~~iF~~~ 201 (216)
T 1pbw_A 184 IKVIEILISTEWNERQPA 201 (216)
T ss_dssp HHHHHHHHHTTC------
T ss_pred HHHHHHHHhhhHHhcCCC
Confidence 899999999999999874
No 8
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=99.88 E-value=1.4e-23 Score=147.31 Aligned_cols=84 Identities=25% Similarity=0.367 Sum_probs=73.4
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
++++.++.+||++|+.+|+||+.||++|+++++.|||++.|||+||||+|+|++.++......... ...
T Consensus 162 ~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkMt~~NLAivf~P~Llrp~~~~~~~~~~~~~-----------~~~ 230 (246)
T 3fk2_A 162 HALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMRPDFSTMDALTATRT-----------YQT 230 (246)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHHCCCSSSSCHHHHHHH-----------HHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCchHHhHHHhcccccCCCCccHHHHHHHHH-----------HHH
Confidence 889999999999999999999999999999999999999999999999999987655443333221 467
Q ss_pred HHHHHHhccccccCC
Q psy5715 89 VRKVSVDKFYCIFTP 103 (107)
Q Consensus 89 vv~~lI~~~~~iF~~ 103 (107)
+|++||+||++||++
T Consensus 231 ive~LI~~~~~iF~n 245 (246)
T 3fk2_A 231 IIELFIQQCPFFFYN 245 (246)
T ss_dssp HHHHHHHTHHHHHC-
T ss_pred HHHHHHHhHHHhcCC
Confidence 999999999999986
No 9
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Probab=99.87 E-value=2e-23 Score=142.18 Aligned_cols=81 Identities=30% Similarity=0.468 Sum_probs=70.2
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
++++.++.+||++|+.+|+||+.||++|+++++.|||+++|||+||||+|+|+++... ...... ..+.
T Consensus 118 ~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~vf~P~Ll~~~~~~~-~~~~~~-----------~~~~ 185 (198)
T 1tx4_A 118 PATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAI-TLKAIN-----------PINT 185 (198)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHCCCSSHHH-HHHTHH-----------HHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHhhhcccccCCCCccc-cHHHHH-----------HHHH
Confidence 8899999999999999999999999999999999999999999999999999874321 111111 1578
Q ss_pred HHHHHHhcccccc
Q psy5715 89 VRKVSVDKFYCIF 101 (107)
Q Consensus 89 vv~~lI~~~~~iF 101 (107)
++++||+||++||
T Consensus 186 ~v~~LI~~~~~iF 198 (198)
T 1tx4_A 186 FTKFLLDHQGELF 198 (198)
T ss_dssp HHHHHHHTHHHHC
T ss_pred HHHHHHHhHHHhC
Confidence 9999999999998
No 10
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*
Probab=99.86 E-value=8.6e-23 Score=143.02 Aligned_cols=85 Identities=28% Similarity=0.437 Sum_probs=70.3
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
++++.++.+||++|+.+|+||+.||++|+++++.|||+++|||+||||+|+|+++... .+.... ..+.
T Consensus 154 ~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~-~~~~~~-----------~~~~ 221 (242)
T 1ow3_A 154 PATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAI-TLKAIN-----------PINT 221 (242)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHCCCSSHHH-HHHTHH-----------HHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCcCCCCHHHhHHhhcchhCCCCCccc-cHHHHH-----------HHHH
Confidence 8899999999999999999999999999999999999999999999999999874322 111111 1578
Q ss_pred HHHHHHhccccccCCCC
Q psy5715 89 VRKVSVDKFYCIFTPTV 105 (107)
Q Consensus 89 vv~~lI~~~~~iF~~~~ 105 (107)
++++||+||++||++..
T Consensus 222 ~v~~LI~~~~~iF~~~~ 238 (242)
T 1ow3_A 222 FTKFLLDHQGELFPSPD 238 (242)
T ss_dssp HHHHHHHTHHHHC----
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 99999999999998753
No 11
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=99.86 E-value=2.3e-22 Score=137.38 Aligned_cols=85 Identities=27% Similarity=0.307 Sum_probs=71.5
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCCh--hhHHHHHHHhhhhccccchh
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRS--WTCLVFGFYKLLGAHFHVSS 86 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 86 (107)
++++.++.+||++|+.+|+||+.||++|+++ +.|||+++|||+||||+|+|++..+. ........ .+
T Consensus 111 ~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~-~~NkM~~~NLa~vf~P~ll~~~~~~~~~~~~~~~~~----------~~ 179 (201)
T 2ovj_A 111 AAMYQAVGELPQANRDTLAFLMIHLQRVAQS-PHTKMDVANLAKVFGPTIVAHAVPNPDPVTMLQDIK----------RQ 179 (201)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHC-TTSCCCHHHHHHHHHHHHTCCSSSSCCHHHHHHHHH----------HH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHcc-cccCCCHHHHHHHhhhhhcCCCCCCCCHHHHHHHHH----------HH
Confidence 7899999999999999999999999999996 68999999999999999999775432 22222111 16
Q ss_pred hHHHHHHHhccccccCCC
Q psy5715 87 GNVRKVSVDKFYCIFTPT 104 (107)
Q Consensus 87 ~~vv~~lI~~~~~iF~~~ 104 (107)
..+|++||+|+++||+.-
T Consensus 180 ~~vv~~LI~~~~~if~~f 197 (201)
T 2ovj_A 180 PKVVERLLSLPLEYWSQF 197 (201)
T ss_dssp HHHHHHHHHSCHHHHHGG
T ss_pred HHHHHHHHHhHHHHHHHH
Confidence 889999999999999863
No 12
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=99.84 E-value=5.3e-22 Score=149.73 Aligned_cols=83 Identities=34% Similarity=0.454 Sum_probs=72.6
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhH
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGN 88 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (107)
++++.++.+||++|+.+|+||+.||++|+++++.|||++.|||+||||+|+++++.+.......... ++.
T Consensus 381 ~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~----------~~~ 450 (463)
T 3cxl_A 381 ETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRY----------QRL 450 (463)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHCCCCCSCTTGGGGGHHH----------HHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHhhccccCCCCccHHHHHHHHHH----------HHH
Confidence 8899999999999999999999999999999999999999999999999999887654332221111 688
Q ss_pred HHHHHHhcccccc
Q psy5715 89 VRKVSVDKFYCIF 101 (107)
Q Consensus 89 vv~~lI~~~~~iF 101 (107)
+|++||+||++||
T Consensus 451 vve~LI~~~~~iF 463 (463)
T 3cxl_A 451 VVELLIKNEDILF 463 (463)
T ss_dssp HHHHHHHTHHHHC
T ss_pred HHHHHHhchhhcC
Confidence 9999999999998
No 13
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}
Probab=99.84 E-value=9.6e-22 Score=139.74 Aligned_cols=87 Identities=23% Similarity=0.313 Sum_probs=71.2
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCCh-hhHHHHHHHhhhhccccchhh
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRS-WTCLVFGFYKLLGAHFHVSSG 87 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 87 (107)
..++.++..||++|+.+|+||+.||++|+++++.|||++.|||+||||+|+|++++.. .......-.+ .+.
T Consensus 172 ~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~--------~~~ 243 (271)
T 3eap_A 172 KATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEKKLR--------LQA 243 (271)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHTCCCCCTTCCHHHHHHHH--------HHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHhHhccCCCCccchhhhHHHHHH--------HHH
Confidence 7788899999999999999999999999999999999999999999999999886322 1111111011 157
Q ss_pred HHHHHHHhccccccCC
Q psy5715 88 NVRKVSVDKFYCIFTP 103 (107)
Q Consensus 88 ~vv~~lI~~~~~iF~~ 103 (107)
.+|++||+||++||.-
T Consensus 244 ~vve~LI~~~~~IF~v 259 (271)
T 3eap_A 244 AVVQTLIDYASDIGRV 259 (271)
T ss_dssp HHHHHHHHTGGGTTCC
T ss_pred HHHHHHHHhHHHHhCC
Confidence 8999999999999963
No 14
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}
Probab=99.79 E-value=3.1e-20 Score=128.96 Aligned_cols=91 Identities=16% Similarity=0.141 Sum_probs=65.7
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCCh--hhHH--------HHHHHhh
Q psy5715 8 QLKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRS--WTCL--------VFGFYKL 77 (107)
Q Consensus 8 ~~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~--~~~~--------~~~~~~~ 77 (107)
.++++.++.+||++|+.+|+||+.||++|+++++.|||++.|||+||||+|+|++..+. .+.. .....+.
T Consensus 128 ~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~s~~~~~~~r~~~~~~~~~~~ 207 (228)
T 3kuq_A 128 LQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSLFHLNTLKRENSSPRVMQRKQSLGKPDQKD 207 (228)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHTCCCC-------------------CHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCchhHhHHHHhhhhcCCCCCCCCCCCcchhhhccccCCCcHHH
Confidence 38999999999999999999999999999999999999999999999999999874321 1111 1111111
Q ss_pred hhccccchhhHHHHHHHhccccc
Q psy5715 78 LGAHFHVSSGNVRKVSVDKFYCI 100 (107)
Q Consensus 78 l~~~~~~~~~~vv~~lI~~~~~i 100 (107)
+.+ ......++.+||++|+.|
T Consensus 208 l~e--~~aa~~~l~~mi~~~~~l 228 (228)
T 3kuq_A 208 LNE--NLAATQGLAHMIAECKKL 228 (228)
T ss_dssp HHH--HHHHHHHHHHHHHC----
T ss_pred HHH--HHHHHHHHHHHHHHhhcC
Confidence 111 123567899999999875
No 15
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}
Probab=99.79 E-value=4e-21 Score=132.57 Aligned_cols=89 Identities=25% Similarity=0.167 Sum_probs=60.8
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCChhhHHHHHHHhhhhccccchhhHHHHH
Q psy5715 13 LVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGAHFHVSSGNVRKV 92 (107)
Q Consensus 13 ~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vv~~ 92 (107)
.++.+||++|+.+|+||+.||++|+++++.|||++.|||+||||+|+|++.+++...........+ .....+..+|++
T Consensus 125 ~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~~--~d~~~~~~vve~ 202 (214)
T 2xs6_A 125 LEPPTLPLHRALTLRFLLQHLGRVARRAPALGPAVRALGATFGPLLLRAPPPPSSPPPGGAPDGSE--PSPDFPALLVEK 202 (214)
T ss_dssp GSTTTSCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--------------------CCTTHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHHHhhhhcCCcccccccccccchhhhH--HhHHHHHHHHHH
Confidence 688899999999999999999999999999999999999999999999886431000000000000 011227889999
Q ss_pred HHhccccccCCCC
Q psy5715 93 SVDKFYCIFTPTV 105 (107)
Q Consensus 93 lI~~~~~iF~~~~ 105 (107)
||+| +||+.+.
T Consensus 203 LI~n--~ife~d~ 213 (214)
T 2xs6_A 203 LLQE--HLEEQEV 213 (214)
T ss_dssp HHHH--HHHC---
T ss_pred HHhh--hccccCC
Confidence 9975 6888653
No 16
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=99.70 E-value=3.9e-18 Score=125.57 Aligned_cols=57 Identities=25% Similarity=0.417 Sum_probs=53.1
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCccccccccccccCCCC
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDR 65 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ll~~~~~~ 65 (107)
+.++.++.+||++|+.+|+||+.||++|+++++.|||+++|||+||||+|+|+++..
T Consensus 284 ~~~~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA~vf~P~Llr~~~~~ 340 (366)
T 3qis_A 284 RICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPPPNL 340 (366)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHSCCCC--
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhhhcccCCCcc
Confidence 568899999999999999999999999999999999999999999999999998654
No 17
>1i96_V Translation initiation factor IF3; 30S ribosome; HET: WO2; 4.20A {Thermus thermophilus} SCOP: d.68.1.1
Probab=42.46 E-value=17 Score=21.04 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHHHHhhhccCCCCCCccCcccccccc
Q psy5715 19 PEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPT 57 (107)
Q Consensus 19 P~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ 57 (107)
|+.-..+|..+..-|..++.-...-+|.-.++.++++|.
T Consensus 47 ~e~g~~lL~r~~~~l~d~~~ve~~pk~eGr~m~m~l~Pk 85 (89)
T 1i96_V 47 PELGERILNRVTEDLKDLAVVEMKPEMLGRDMNMLLAPV 85 (89)
T ss_pred HHHHHHHHHHHHHHhhhheEEecCccccCCEEEEEEEeC
Confidence 456778899999999998876666789999999999995
No 18
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=40.86 E-value=29 Score=20.21 Aligned_cols=20 Identities=15% Similarity=0.094 Sum_probs=18.1
Q ss_pred HHHHHHHhhcCHHHHHHHHH
Q psy5715 9 LKLVLVVHELPEHHFQTLKY 28 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~ 28 (107)
+.+...+..||+..+.++..
T Consensus 11 ~~l~~aL~~Lp~reR~Vi~L 30 (99)
T 3t72_q 11 AATHDVLAGLTAREAKVLRM 30 (99)
T ss_pred HHHHHHHHcCCHHHHHHHHH
Confidence 88999999999999998865
No 19
>2ife_A Protein (translation initiation factor IF3); gene regulation; NMR {Escherichia coli} SCOP: d.68.1.1
Probab=37.12 E-value=26 Score=20.73 Aligned_cols=39 Identities=15% Similarity=0.346 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHHHHhhhccCCC-CCCccCcccccccc
Q psy5715 19 PEHHFQTLKYILQHLKRVVDNSEVN-KMEARNLAIMFGPT 57 (107)
Q Consensus 19 P~~n~~~L~~l~~~L~~v~~~s~~n-kM~~~nLaivf~P~ 57 (107)
|+....+|..+..-|..++.-...- +|.-.++.++++|.
T Consensus 58 ~e~g~~lL~r~~~~l~d~~~ve~~p~k~eGr~m~m~l~Pk 97 (100)
T 2ife_A 58 QQIGMEVLNRVKDDLQELAVVESFPTKIEGRQMIMVLAPK 97 (100)
T ss_dssp SSHHHHHHHHHHHHHTTTEEESCCCCCCCSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhhhheEEecCcccccCceEEEEEEeC
Confidence 5567788999999999988765555 89999999999994
No 20
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=36.15 E-value=46 Score=19.53 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=30.6
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCcc
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLA 51 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLa 51 (107)
+.++.....|++..+.+..|++.+...+. .|++.-||
T Consensus 6 ~~I~~~~~~lt~~e~~ia~yil~~~~~~~------~~si~elA 42 (107)
T 3iwf_A 6 YKIDNQYPYFTKNEKKIAQFILNYPHKVV------NMTSQEIA 42 (107)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHCHHHHT------TCCHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhCHHHHH------HCCHHHHH
Confidence 56788889999999999999999998886 45555555
No 21
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=32.31 E-value=58 Score=19.10 Aligned_cols=37 Identities=19% Similarity=0.371 Sum_probs=29.5
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCcc
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLA 51 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLa 51 (107)
..++.....|++..+.+..|++.+...+.. |++.-||
T Consensus 10 ~~i~~~~~~ls~~e~~ia~yil~~~~~~~~------~si~elA 46 (111)
T 2o3f_A 10 AIIQSMXHXLPPSERKLADYILAHPHXAIE------STVNEIS 46 (111)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHCHHHHHT------CCHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHChHHHHh------cCHHHHH
Confidence 556777789999999999999999988864 4555555
No 22
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=25.10 E-value=57 Score=15.98 Aligned_cols=31 Identities=10% Similarity=0.029 Sum_probs=26.1
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhhhc
Q psy5715 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDN 39 (107)
Q Consensus 9 ~~l~~~l~~LP~~n~~~L~~l~~~L~~v~~~ 39 (107)
+-+..|+..||......+...++.++.++..
T Consensus 15 eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~ 45 (53)
T 1fs1_A 15 ELLLGIFSCLCLPELLKVSGVCKRWYRLASD 45 (53)
T ss_dssp HHHHHHHTTSCGGGHHHHHTTCHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence 6678899999999888888888888888763
No 23
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=22.86 E-value=61 Score=19.09 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=25.5
Q ss_pred HHHHHHH-hhcCHHHHHHHHHHHHHHHHhhhccCCCCCCccCcccccccc
Q psy5715 9 LKLVLVV-HELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPT 57 (107)
Q Consensus 9 ~~l~~~l-~~LP~~n~~~L~~l~~~L~~v~~~s~~nkM~~~nLaivf~P~ 57 (107)
..+.+.+ ..||+..+.++..... ..|+..-+|-.+|-+
T Consensus 13 ~~l~~~l~~~L~~~~r~vl~l~y~-----------~g~s~~EIA~~lgiS 51 (113)
T 1s7o_A 13 NALFEFYAALLTDKQMNYIELYYA-----------DDYSLAEIADEFGVS 51 (113)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHH-----------TCCCHHHHHHHHTCC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH-----------cCCCHHHHHHHHCcC
Confidence 7788888 8999999988765421 245555566555443
No 24
>3oak_C Transcription elongation factor SPT6; transcription factor complex, nucleus; 2.15A {Saccharomyces cerevisiae}
Probab=22.17 E-value=18 Score=16.79 Aligned_cols=15 Identities=33% Similarity=0.634 Sum_probs=11.5
Q ss_pred HHhccccccCCCCCC
Q psy5715 93 SVDKFYCIFTPTVPY 107 (107)
Q Consensus 93 lI~~~~~iF~~~~py 107 (107)
-++....||++...|
T Consensus 9 aledm~eiFGdG~dY 23 (31)
T 3oak_C 9 KIDEMYDIFGDGHDY 23 (31)
T ss_dssp HHHHHHHHHCCSCTT
T ss_pred HHHHHHHHhCCCchh
Confidence 366777899988877
Done!