RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5715
(107 letters)
>gnl|CDD|239860 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
ArhGAP21-like proteins. ArhGAP21 is a multi-domain
protein, containing RhoGAP, PH and PDZ domains, and is
believed to play a role in the organization of the
cell-cell junction complex. It has been shown to
function as a GAP of Cdc42 and RhoA, and to interact
with alpha-catenin and Arf6. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates effectors
involved in a wide variety of developmental processes,
including regulation of cytoskeleton formation, cell
proliferation and the JNK signaling pathway. GTPases
generally have a low intrinsic GTPase hydrolytic
activity but there are family-specific groups of GAPs
that enhance the rate of GTP hydrolysis by several
orders of magnitude.
Length = 196
Score = 93.2 bits (232), Expect = 3e-25
Identities = 35/50 (70%), Positives = 44/50 (88%)
Query: 15 VHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD 64
+H LP+HH++TLK++++HLK V DNSEVNKME RNLAI+FGPTLVR DD
Sbjct: 120 IHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVFGPTLVRTSDD 169
>gnl|CDD|216027 pfam00620, RhoGAP, RhoGAP domain. GTPase activator proteins
towards Rho/Rac/Cdc42-like small GTPases.
Length = 152
Score = 80.3 bits (199), Expect = 1e-20
Identities = 32/57 (56%), Positives = 40/57 (70%)
Query: 10 KLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRS 66
L ++ +LP + TL+Y+L HL RV NSEVNKM A NLAI+FGPTL+R DD S
Sbjct: 95 ALRELLRKLPPANRDTLRYLLAHLNRVAQNSEVNKMNAHNLAIVFGPTLLRPPDDES 151
>gnl|CDD|238090 cd00159, RhoGAP, RhoGAP: GTPase-activator protein (GAP) for
Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small
GTPases. Small GTPases (G proteins) cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when bound
to GDP. The Rho family of small G proteins, which
includes Cdc42Hs, activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. G proteins generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude. The
RhoGAPs are one of the major classes of regulators of
Rho G proteins.
Length = 169
Score = 74.3 bits (183), Expect = 4e-18
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 10 KLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD 64
L ++ LP + LKY+L+ L ++ NSEVNKM A NLAI+F PTL+R D
Sbjct: 94 ALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDS 148
>gnl|CDD|214618 smart00324, RhoGAP, GTPase-activator protein for Rho-like GTPases.
GTPase activator proteins towards Rho/Rac/Cdc42-like
small GTPases. etter domain limits and outliers.
Length = 174
Score = 74.2 bits (183), Expect = 4e-18
Identities = 29/56 (51%), Positives = 38/56 (67%)
Query: 11 LVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRS 66
L ++ LP + TL+Y+L HL RV ++SE NKM ARNLAI+FGPTL+R D
Sbjct: 99 LRELLSLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEV 154
>gnl|CDD|239837 cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain of chimaerins. Chimaerins are a family
of phorbolester- and diacylglycerol-responsive GAPs
specific for the Rho-like GTPase Rac. Chimaerins exist
in two alternative splice forms that each contain a
C-terminal GAP domain, and a central C1 domain which
binds phorbol esters, inducing a conformational change
that activates the protein; one splice form is lacking
the N-terminal Src homology-2 (SH2) domain. Small
GTPases cluster into distinct families, and all act as
molecular switches, active in their GTP-bound form but
inactive when GDP-bound. The Rho family of GTPases
activates effectors involved in a wide variety of
developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 194
Score = 70.2 bits (172), Expect = 2e-16
Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 5 QDFQLKLVL-VVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD 63
D +L+ V + LP H++TL+Y+++HLKRV + + NKM A NL I+FGPTL+R +
Sbjct: 107 PDERLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGPTLMRPPE 166
Query: 64 DRSWTCL 70
D + T L
Sbjct: 167 DSALTTL 173
>gnl|CDD|239869 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP,
also known as RhoGAP-1, contains a C-terminal RhoGAP
domain and an N-terminal Sec14 domain which binds
phosphatidylinositol 3,4,5-trisphosphate
(PtdIns(3,4,5)P3). It is ubiquitously expressed and
preferentially active on Cdc42. This subgroup also
contains closely related ARHGAP8. Small GTPases cluster
into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 195
Score = 66.6 bits (163), Expect = 5e-15
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 14 VVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD 63
++ LPE ++Q LKY+++ L +V +S+ NKM NLA++FGP L+ A D
Sbjct: 120 LLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVFGPNLLWAKD 169
>gnl|CDD|239843 cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain of GMIP (Gem interacting protein) and
PARG1 (PTPL1-associated RhoGAP1). GMIP plays important
roles in neurite growth and axonal guidance, and
interacts with Gem, a member of the RGK subfamily of the
Ras small GTPase superfamily, through the N-terminal
half of the protein. GMIP contains a C-terminal RhoGAP
domain. GMIP inhibits RhoA function, but is inactive
towards Rac1 and Cdc41. PARG1 interacts with Rap2, also
a member of the Ras small GTPase superfamily whose exact
function is unknown, and shows strong preference for
Rho. Small GTPases cluster into distinct families, and
all act as molecular switches, active in their GTP-bound
form but inactive when GDP-bound. The Rho family of
GTPases activates effectors involved in a wide variety
of developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 203
Score = 66.3 bits (162), Expect = 9e-15
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 7 FQLKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD--- 63
+LK +L +LP ++ TL++++ HL RV + E NKM NL I+FGPTL+R
Sbjct: 123 RKLKDLLR--QLPASNYNTLQHLIAHLYRVAEQFEENKMSPNNLGIVFGPTLIRPRPGDA 180
Query: 64 DRSWTCLV 71
D S + LV
Sbjct: 181 DVSLSSLV 188
>gnl|CDD|239874 cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally
cloned as an interaction partner of PTPL1, an
intracellular protein-tyrosine phosphatase. PARG1
interacts with Rap2, also a member of the Ras small
GTPase superfamily whose exact function is unknown, and
shows strong preference for Rho. Small GTPases cluster
into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 211
Score = 65.2 bits (159), Expect = 2e-14
Identities = 24/52 (46%), Positives = 37/52 (71%)
Query: 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVR 60
LK ++ +LP ++ TL++++ HL RV + +E NKM A NL I+FGPTL+R
Sbjct: 131 LKSKDLLRQLPAPNYNTLQFLIVHLHRVSEQAEENKMSASNLGIIFGPTLIR 182
>gnl|CDD|239868 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_15_12_9:
GTPase-activator protein (GAP) domain for Rho-like
GTPases found in ARHGAP27 (also called CAMGAP1),
ARHGAP15, 12 and 9-like proteins; This subgroup of
ARHGAPs are multidomain proteins that contain RhoGAP,
PH, SH3 and WW domains. Most members that are studied
show GAP activity towards Rac1, some additionally show
activity towards Cdc42. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates effectors
involved in a wide variety of developmental processes,
including regulation of cytoskeleton formation, cell
proliferation and the JNK signaling pathway. GTPases
generally have a low intrinsic GTPase hydrolytic
activity but there are family-specific groups of GAPs
that enhance the rate of GTP hydrolysis by several
orders of magnitude.
Length = 187
Score = 62.8 bits (153), Expect = 1e-13
Identities = 22/52 (42%), Positives = 35/52 (67%)
Query: 15 VHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRS 66
+ LP+ + TLK + +HL RV+++ E N+M +NLAI+FGPTL+R +
Sbjct: 117 IKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPTLLRPEQETG 168
>gnl|CDD|239873 cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain of GMIP (Gem
interacting protein). GMIP plays important roles in
neurite growth and axonal guidance, and interacts with
Gem, a member of the RGK subfamily of the Ras small
GTPase superfamily, through the N-terminal half of the
protein. GMIP contains a C-terminal RhoGAP domain. GMIP
inhibits RhoA function, but is inactive towards Rac1 and
Cdc41. Small GTPases cluster into distinct families, and
all act as molecular switches, active in their GTP-bound
form but inactive when GDP-bound. The Rho family of
GTPases activates effectors involved in a wide variety
of developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 200
Score = 60.6 bits (147), Expect = 1e-12
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 8 QLKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD--DR 65
LK +L LP ++ TL++++ HL RV + E NKM NL I+FGPTL+R D
Sbjct: 122 SLKELLG--RLPVSNYNTLRHLMAHLYRVAERFEDNKMSPNNLGIVFGPTLLRPLVGGDV 179
Query: 66 SWTCLVFGFYKLLGAHFHVS 85
S CL+ Y+ F +S
Sbjct: 180 SMICLLDTGYQAQLVEFLIS 199
>gnl|CDD|239847 cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain present in MgcRacGAP proteins. MgcRacGAP
plays an important dual role in cytokinesis: i) it is
part of centralspindlin-complex, together with the
mitotic kinesin MKLP1, which is critical for the
structure of the central spindle by promoting microtuble
bundling. ii) after phosphorylation by aurora B
MgcRacGAP becomes an effective regulator of RhoA and
plays an important role in the assembly of the
contractile ring and the initiation of cytokinesis.
MgcRacGAP-like proteins contain a N-terminal C1-like
domain, and a C-terminal RhoGAP domain. Small GTPases
cluster into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 193
Score = 60.4 bits (147), Expect = 1e-12
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 5 QDFQLKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLV 59
+ + L + ELP+ + TL +++ HL+RV S KM+ NLA +FGPT+V
Sbjct: 106 DNSRAALYQAISELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIV 159
>gnl|CDD|239863 cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein
for Rho3 and Rho4 and plays a role in low-pH response.
Small GTPases cluster into distinct families, and all
act as molecular switches, active in their GTP-bound
form but inactive when GDP-bound. The Rho family of
GTPases activates effectors involved in a wide variety
of developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 192
Score = 59.3 bits (144), Expect = 3e-12
Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Query: 15 VHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAG----DDRSWTCL 70
+++LP+ ++ TL+ ++ HL R+ ++ VN+M NLAI++GPTL+ A D S+
Sbjct: 120 INDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIWGPTLMNAAPDNAADMSFQSR 179
Query: 71 V 71
V
Sbjct: 180 V 180
>gnl|CDD|239839 cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activator protein (GAP)
domain for Rho-like GTPases found in GRAF (GTPase
regulator associated with focal adhesion kinase); Graf
is a multi-domain protein, containing SH3 and PH
domains, that binds focal adhesion kinase and influences
cytoskeletal changes mediated by Rho proteins. Graf
exhibits GAP activity toward RhoA and Cdc42, but only
weakly activates Rac1. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates effectors
involved in a wide variety of developmental processes,
including regulation of cytoskeleton formation, cell
proliferation and the JNK signaling pathway. GTPases
generally have a low intrinsic GTPase hydrolytic
activity but there are family-specific groups of GAPs
that enhance the rate of GTP hydrolysis by several
orders of magnitude.
Length = 203
Score = 59.7 bits (145), Expect = 3e-12
Identities = 21/47 (44%), Positives = 33/47 (70%)
Query: 15 VHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRA 61
VH+LPE + + L+ +++HL V D+S+ N M NL ++FGPTL+R
Sbjct: 133 VHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRP 179
>gnl|CDD|239852 cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain of Bcr
(breakpoint cluster region protein)-like proteins. Bcr
is a multidomain protein with a variety of enzymatic
functions. It contains a RhoGAP and a Rho GEF domain, a
Ser/Thr kinase domain, an N-terminal oligomerization
domain, and a C-terminal PDZ binding domain, in addition
to PH and C2 domains. Bcr is a negative regulator of:
i) RacGTPase, via the Rho GAP domain, ii) the
Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras
binding protein AF-6, and iii) the Wnt signaling pathway
through binding beta-catenin. Bcr can form a complex
with beta-catenin and Tcf1. The Wnt signaling pathway
is involved in cell proliferation, differentiation, and
cell renewal. Bcr was discovered as a fusion partner of
Abl. The Bcr-Abl fusion is characteristic for a large
majority of chronic myelogenous leukemias (CML). Small
GTPases cluster into distinct families, and all act as
molecular switches, active in their GTP-bound form but
inactive when GDP-bound. The Rho family of GTPases
activates effectors involved in a wide variety of
developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 196
Score = 57.2 bits (138), Expect = 2e-11
Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 18 LPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRS 66
LP+ + T ++L HLKRV + EVNKM NLA +FGPTL+R + S
Sbjct: 120 LPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGPTLLRPSEKES 168
>gnl|CDD|239850 cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain present in
ARAPs. ARAPs (also known as centaurin deltas) contain,
besides the RhoGAP domain, an Arf GAP, ankyrin repeat
ras-associating, and PH domains. Since their ArfGAP
activity is PIP3-dependent, ARAPs are considered
integration points for phosphoinositide, Arf and Rho
signaling. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 184
Score = 54.6 bits (132), Expect = 2e-10
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 14 VVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD 64
++ LP + TLK ++ HL RV +S+ N+M NLA++FGPTL + +
Sbjct: 115 LIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPTLFQTDEH 165
>gnl|CDD|239849 cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP
domain and a C-terminal proline-rich region, and it is
active on both Cdc42 and Rac1 but not RhoA. CdGAP is
recruited to focal adhesions via the interaction with
the scaffold protein actopaxin (alpha-parvin). Small
GTPases cluster into distinct families, and all act as
molecular switches, active in their GTP-bound form but
inactive when GDP-bound. The Rho family of GTPases
activates effectors involved in a wide variety of
developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 195
Score = 53.7 bits (129), Expect = 4e-10
Identities = 18/48 (37%), Positives = 34/48 (70%)
Query: 14 VVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRA 61
V+ +LP H++TL+++++HL R+ + M A+NLAI++ P L+R+
Sbjct: 118 VIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVWAPNLLRS 165
>gnl|CDD|239838 cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain of p190-like
proteins. p190, also named RhoGAP5, plays a role in
neuritogenesis and axon branch stability. p190 shows a
preference for Rho, over Rac and Cdc42, and consists of
an N-terminal GTPase domain and a C-terminal GAP domain.
The central portion of p190 contains important
regulatory phosphorylation sites. Small GTPases cluster
into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 185
Score = 53.6 bits (129), Expect = 4e-10
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 14 VVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVR 60
++ + P +F KY++ HL +V NS+VN M + NL+I F PTL+R
Sbjct: 114 LLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPTLMR 160
>gnl|CDD|239859 cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain of ArhGAP11A-like proteins. The mouse
homolog of human ArhGAP11A has been detected as a gene
exclusively expressed in immature ganglion cells,
potentially playing a role in retinal development. The
exact function of ArhGAP11A is unknown. Small GTPases
cluster into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 202
Score = 53.2 bits (128), Expect = 6e-10
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 11 LVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD 64
+L+ LP+ H TL+Y L V NKM++ NLA++F P L ++ +
Sbjct: 112 TLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAPNLFQSEEG 165
>gnl|CDD|239842 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain present in class IX myosins. Class IX
myosins contain a characteristic head domain, a neck
domain, a tail domain which contains a C6H2-zinc binding
motif and a RhoGAP domain. Class IX myosins are
single-headed, processive myosins that are partly
cytoplasmic, and partly associated with membranes and
the actin cytoskeleton. Class IX myosins are implicated
in the regulation of neuronal morphogenesis and function
of sensory systems, like the inner ear. There are two
major isoforms, myosin IXA and IXB with several splice
variants, which are both expressed in developing
neurons. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 186
Score = 52.1 bits (125), Expect = 2e-09
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 14 VVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD 63
V+ +LP + TL+ ++ HL RV EVN+M A LAI+F P ++R D
Sbjct: 113 VLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCILRCPD 162
>gnl|CDD|239865 cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP]
protein for Rho-like small GTPases) domain of fungal
BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and
is specifically involved in the control of the initial
assembly of the septin ring in yeast bud formation.
Small GTPases cluster into distinct families, and all
act as molecular switches, active in their GTP-bound
form but inactive when GDP-bound. The Rho family of
GTPases activates effectors involved in a wide variety
of developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 190
Score = 51.2 bits (123), Expect = 3e-09
Identities = 17/45 (37%), Positives = 32/45 (71%)
Query: 14 VVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTL 58
+V +LP+ ++ L + L++++++S+VNKM RN+ I+F PTL
Sbjct: 125 LVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLRNVCIVFSPTL 169
>gnl|CDD|239851 cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
Nadrin-like proteins. Nadrin, also named Rich-1, has
been shown to be involved in the regulation of
Ca2+-dependent exocytosis in neurons and recently has
been implicated in tight junction maintenance in
mammalian epithelium. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates effectors
involved in a wide variety of developmental processes,
including regulation of cytoskeleton formation, cell
proliferation and the JNK signaling pathway. GTPases
generally have a low intrinsic GTPase hydrolytic
activity but there are family-specific groups of GAPs
that enhance the rate of GTP hydrolysis by several
orders of magnitude.
Length = 203
Score = 50.9 bits (122), Expect = 5e-09
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 14 VVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTL 58
++++LP + L+Y+++ L ++ S+ NKM N+AI+ P L
Sbjct: 120 ILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVLAPNL 164
>gnl|CDD|239853 cd04388, RhoGAP_p85, RhoGAP_p85: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain present in the
p85 isoforms of the regulatory subunit of the class IA
PI3K (phosphatidylinositol 3'-kinase). This domain is
also called Bcr (breakpoint cluster region protein)
homology (BH) domain. Class IA PI3Ks are heterodimers,
containing a regulatory subunit (p85) and a catalytic
subunit (p110) and are activated by growth factor
receptor tyrosine kinases (RTKs); this activation is
mediated by the p85 subunit. p85 isoforms, alpha and
beta, contain a C-terminal p110-binding domain flanked
by two SH2 domains, an N-terminal SH3 domain, and a
RhoGAP domain flanked by two proline-rich regions. Small
GTPases cluster into distinct families, and all act as
molecular switches, active in their GTP-bound form but
inactive when GDP-bound. The Rho family of GTPases
activates effectors involved in a wide variety of
developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 200
Score = 49.5 bits (118), Expect = 2e-08
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 9 LKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRA 61
L+ ++ LP ++ TL+Y+L+H R+ +S N + AR LA +F P L R
Sbjct: 110 LRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFRF 162
>gnl|CDD|239844 cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain present in
SYD-1_like proteins. Syd-1, first identified and best
studied in C.elegans, has been shown to play an
important role in neuronal development by specifying
axonal properties. Small GTPases cluster into distinct
families, and all act as molecular switches, active in
their GTP-bound form but inactive when GDP-bound. The
Rho family of GTPases activates effectors involved in a
wide variety of developmental processes, including
regulation of cytoskeleton formation, cell proliferation
and the JNK signaling pathway. GTPases generally have a
low intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 207
Score = 49.0 bits (117), Expect = 3e-08
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 10 KLVLVVHE-LPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD 63
L L + + LP TL +L HL V+ NSE NKM +NLA+ FGP L+
Sbjct: 117 HLTLSIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLAVCFGPVLMFCSQ 171
>gnl|CDD|239855 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24_25:
GTPase-activator protein (GAP) domain for Rho-like
GTPases found in ARHGAP22, 24 and 25-like proteins;
longer isoforms of these proteins contain an additional
N-terminal pleckstrin homology (PH) domain. ARHGAP25
(KIA0053) has been identified as a GAP for Rac1 and
Cdc42. Short isoforms (without the PH domain) of
ARHGAP24, called RC-GAP72 and p73RhoGAP, and of
ARHGAP22, called p68RacGAP, has been shown to be
involved in angiogenesis and endothelial cell capillary
formation. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 199
Score = 47.8 bits (114), Expect = 7e-08
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 10 KLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRA 61
+L+ V LP+ ++ L YI + L V NS VNKM +NLA +FGP ++R
Sbjct: 118 ELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLATVFGPNILRP 169
>gnl|CDD|239856 cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
ArhGAP18-like proteins. The function of ArhGAP18 is
unknown. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 216
Score = 47.3 bits (113), Expect = 9e-08
Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 8 QLK-LVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTL 58
QL+ L L+V LPE + TLK +L+ L++VVD+ E NKM N+A++ P L
Sbjct: 115 QLQALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVAMIMAPNL 166
>gnl|CDD|239872 cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain present in myosins IXB. Class IX myosins
contain a characteristic head domain, a neck domain and
a tail domain which contains a C6H2-zinc binding motif
and a Rho-GAP domain. Class IX myosins are
single-headed, processive myosins that are partly
cytoplasmic, and partly associated with membranes and
the actin cytoskeleton. Class IX myosins are implicated
in the regulation of neuronal morphogenesis and function
of sensory systems, like the inner ear. There are two
major isoforms, myosin IXA and IXB with several splice
variants, which are both expressed in developing neurons
Small GTPases cluster into distinct families, and all
act as molecular switches, active in their GTP-bound
form but inactive when GDP-bound. The Rho family of
GTPases activates effectors involved in a wide variety
of developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 186
Score = 43.8 bits (103), Expect = 2e-06
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 14 VVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD 63
V+ +LP + TL+ ++ HL +V +VN+M LAI+F P L+R D
Sbjct: 113 VLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCLLRCPD 162
>gnl|CDD|239848 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain present
in srGAPs. srGAPs are components of the intracellular
part of Slit-Robo signalling pathway that is important
for axon guidance and cell migration. srGAPs contain an
N-terminal FCH domain, a central RhoGAP domain and a
C-terminal SH3 domain; this SH3 domain interacts with
the intracellular proline-rich-tail of the Roundabout
receptor (Robo). This interaction with Robo then
activates the rhoGAP domain which in turn inhibits Cdc42
activity. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 188
Score = 43.6 bits (103), Expect = 2e-06
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 5 QDFQLKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD 64
+ ++ ++ LP ++Y+ L + S+ N M+ NLAI FGPTL+ +
Sbjct: 109 TERVHQIREILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICFGPTLMPVPEG 168
Query: 65 R 65
+
Sbjct: 169 Q 169
>gnl|CDD|239858 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
FAM13A1, isoform a-like proteins. The function of
FAM13A1a is unknown. Small GTPases cluster into distinct
families, and all act as molecular switches, active in
their GTP-bound form but inactive when GDP-bound. The
Rho family of GTPases activates effectors involved in a
wide variety of developmental processes, including
regulation of cytoskeleton formation, cell proliferation
and the JNK signaling pathway. GTPases generally have a
low intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by up several orders of magnitude.
Length = 189
Score = 42.8 bits (101), Expect = 4e-06
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 10 KLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGP 56
KL ++ +LP ++ LK++ L V N+M A NLA +FGP
Sbjct: 115 KLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVFGP 161
>gnl|CDD|239857 cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
ArhGAP19-like proteins. The function of ArhGAP19 is
unknown. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 208
Score = 42.8 bits (101), Expect = 5e-06
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 8 QLKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLV 59
QL L+L LPE + LK IL L + + + NKM A NLA++F P L+
Sbjct: 117 QLLLLL----LPEENRNLLKLILDLLYQTAKHEDKNKMSADNLALLFTPHLI 164
>gnl|CDD|239871 cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain present in myosins IXA. Class IX myosins
contain a characteristic head domain, a neck domain and
a tail domain which contains a C6H2-zinc binding motif
and a Rho-GAP domain. Class IX myosins are
single-headed, processive myosins that are partly
cytoplasmic, and partly associated with membranes and
the actin cytoskeleton. Class IX myosins are implicated
in the regulation of neuronal morphogenesis and function
of sensory systems, like the inner ear. There are two
major isoforms, myosin IXA and IXB with several splice
variants, which are both expressed in developing
neurons. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 186
Score = 42.7 bits (100), Expect = 5e-06
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 14 VVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD 63
V+ +L H TL+ ++ HL R+ E N+M A LAI+F P ++R D
Sbjct: 113 VIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCILRCPD 162
>gnl|CDD|239867 cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391
and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain,
and ANXL repeats. ArhGAP20 is activated by Rap1 and
induces inactivation of Rho, which in turn leads to
neurite outgrowth. Small GTPases cluster into distinct
families, and all act as molecular switches, active in
their GTP-bound form but inactive when GDP-bound. The
Rho family of GTPases activates effectors involved in a
wide variety of developmental processes, including
regulation of cytoskeleton formation, cell proliferation
and the JNK signaling pathway. GTPases generally have a
low intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 192
Score = 42.3 bits (100), Expect = 7e-06
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 14 VVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRS 66
++ +LP + LK+++ L + NSE NKM+A NLA+ P+L+
Sbjct: 112 LLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLLWPPASSE 164
>gnl|CDD|239840 cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain of DLC1-like
proteins. DLC1 shows in vitro GAP activity towards RhoA
and CDC42. Beside its C-terminal GAP domain, DLC1 also
contains a SAM (sterile alpha motif) and a START
(StAR-related lipid transfer action) domain. DLC1 has
tumor suppressor activity in cell culture. Small GTPases
cluster into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 220
Score = 41.2 bits (97), Expect = 2e-05
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 18 LPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTL 58
LP+ + + L+ +L L V NS+ N+M A NLA+ P+L
Sbjct: 122 LPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLAPSL 162
>gnl|CDD|239841 cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
ArhGAP6-like proteins. ArhGAP6 shows GAP activity
towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is
often deleted in microphthalmia with linear skin defects
syndrome (MLS); MLS is a severe X-linked developmental
disorder. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 206
Score = 40.1 bits (94), Expect = 4e-05
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Query: 11 LVLVVHELPEHHFQTLKYILQHLKRVVDNSEV-----------NKMEARNLAIMFGPTLV 59
L L+++ LP + TL +L+ L V +++ NKM + NLA +FGP L+
Sbjct: 103 LQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLL 162
Query: 60 RAGDD 64
Sbjct: 163 HKQKS 167
>gnl|CDD|239846 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain present
in RalBP1 proteins, also known as RLIP, RLIP76 or
cytocentrin. RalBP1 plays an important role in
endocytosis during interphase. During mitosis, RalBP1
transiently associates with the centromere and has been
shown to play an essential role in the proper assembly
of the mitotic apparatus. RalBP1 is an effector of the
Ral GTPase which itself is an effector of Ras. RalBP1
contains a RhoGAP domain, which shows weak activity
towards Rac1 and Cdc42, but not towards Ral, and a Ral
effector domain binding motif. Small GTPases cluster
into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 182
Score = 37.4 bits (87), Expect = 3e-04
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 4 VQDFQLKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTL 58
Q+ Q ++ ELPE + L +++ H+ V+ KM +N++I+ PT+
Sbjct: 111 EQELQR----LLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSPTV 161
>gnl|CDD|173953 cd08194, Fe-ADH6, Iron-containing alcohol dehydrogenases-like.
Iron-containing alcohol dehydrogenase-like. Proteins of
this family have not been characterized. Their specific
function is unknown. The protein structure represents a
dehydroquinate synthase-like fold and belongs to the
alcohol dehydrogenase-like superfamily. They are
distinct from other alcohol dehydrogenases which contain
different protein domains. Alcohol dehydrogenase
catalyzes the reduction of acetaldehyde to alcohol with
NADP as cofactor. Its activity requires iron ions.
Length = 375
Score = 37.2 bits (87), Expect = 5e-04
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 26 LKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD--DRSWTCLVFGFYKLLGAHFH 83
+K I ++L+ N + EAR +M G T AG + LV G + +GA FH
Sbjct: 212 IKLIGKNLRTAYLNPD--NREARE-EMMLGATE--AGIAFSNASVALVHGMSRPIGALFH 266
Query: 84 VSSG 87
V G
Sbjct: 267 VPHG 270
>gnl|CDD|239861 cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain of fungal SAC7 and BAG7-like proteins.
Both proteins are GTPase activating proteins of Rho1,
but differ functionally in vivo: SAC7, but not BAG7, is
involved in the control of Rho1-mediated activation of
the PKC-MPK1 pathway. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates effectors
involved in a wide variety of developmental processes,
including regulation of cytoskeleton formation, cell
proliferation and the JNK signaling pathway. GTPases
generally have a low intrinsic GTPase hydrolytic
activity but there are family-specific groups of GAPs
that enhance the rate of GTP hydrolysis by several
orders of magnitude.
Length = 225
Score = 36.6 bits (85), Expect = 7e-04
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 14 VVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTL 58
++ LP + Q L Y+L L NS+ N M A NLA +F P +
Sbjct: 150 LITRLPNLNRQLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGI 194
>gnl|CDD|239845 cd04380, RhoGAP_OCRL1, RhoGAP_OCRL1: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain present
in OCRL1-like proteins. OCRL1 (oculocerebrorenal
syndrome of Lowe 1)-like proteins contain two conserved
domains: a central inositol polyphosphate 5-phosphatase
domain and a C-terminal Rho GAP domain, this GAP domain
lacks the catalytic residue and therefore maybe
inactive. OCRL-like proteins are type II inositol
polyphosphate 5-phosphatases that can hydrolyze lipid
PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and
Ins(1,3,4,5)P4, but their individual specificities vary.
The functionality of the RhoGAP domain is still unclear.
Small GTPases cluster into distinct families, and all
act as molecular switches, active in their GTP-bound
form but inactive when GDP-bound. The Rho family of
GTPases activates effectors involved in a wide variety
of developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 220
Score = 34.6 bits (80), Expect = 0.004
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 6 DFQLKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVR 60
+ + K ++ LP H Y+ L+ ++ S ++ LA +FG L+R
Sbjct: 138 NEEDKRQVIRISLPPVHRNVFVYLCSFLRELLSESADRGLDENTLATIFGRVLLR 192
>gnl|CDD|239854 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-activator protein
(GAP) domain for Rho-like GTPases found in KIAA1688-like
proteins; KIAA1688 is a protein of unknown function that
contains a RhoGAP domain and a myosin tail homology 4
(MyTH4) domain. Small GTPases cluster into distinct
families, and all act as molecular switches, active in
their GTP-bound form but inactive when GDP-bound. The
Rho family of GTPases activates effectors involved in a
wide variety of developmental processes, including
regulation of cytoskeleton formation, cell proliferation
and the JNK signaling pathway. GTPases generally have a
low intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 187
Score = 33.5 bits (77), Expect = 0.008
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 10 KLVLVVHELPEHHFQTLKYILQHLKRVV--DNSEVNKMEARNLAIMFGPTLVR 60
K V +V +LP + L Y++ L+ +N KM+ NLA++F P ++R
Sbjct: 109 KAVEIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMVFAPNILR 161
>gnl|CDD|132014 TIGR02969, mam_aldehyde_ox, aldehyde oxidase. Members of this
family are mammalian aldehyde oxidase (EC 1.2.3.1)
isozymes, closely related to xanthine
dehydrogenase/oxidase.
Length = 1330
Score = 28.1 bits (62), Expect = 0.85
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Query: 8 QLKLVL--VVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD 63
Q+K +L VV +LPE QT + +L+HL + S++ RN+A + G + R D
Sbjct: 310 QVKDILADVVQKLPEETTQTYRALLKHL-GTLAGSQI-----RNMASLGGHIISRHLD 361
>gnl|CDD|239862 cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
fungal LRG1-like proteins. Yeast Lrg1p is required for
efficient cell fusion, and mother-daughter cell
separation, possibly through acting as a RhoGAP
specifically regulating 1,3-beta-glucan synthesis. Small
GTPases cluster into distinct families, and all act as
molecular switches, active in their GTP-bound form but
inactive when GDP-bound. The Rho family of GTPases
activates effectors involved in a wide variety of
developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 213
Score = 28.1 bits (63), Expect = 0.85
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 11 LVLVVHELPEHHFQTLKYILQHLKRV-----VDNSEVNKMEARNLAIMFGPTLVR 60
L LV LP++H T++ + LK V +D +KM+ NLA + P ++
Sbjct: 123 LHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETGSKMDIHNLATVITPNILY 177
>gnl|CDD|239864 cd04399, RhoGAP_fRGD2, RhoGAP_fRGD2: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein
for Cdc42 and Rho5. Small GTPases cluster into distinct
families, and all act as molecular switches, active in
their GTP-bound form but inactive when GDP-bound. The
Rho family of GTPases activates effectors involved in a
wide variety of developmental processes, including
regulation of cytoskeleton formation, cell proliferation
and the JNK signaling pathway. GTPases generally have a
low intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 212
Score = 27.3 bits (61), Expect = 1.3
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 18 LPEHHFQTLKYILQHLKRVVD---NSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFG 73
LP+ H TL I+ H R+++ E + A LA ++R + L G
Sbjct: 134 LPKSHIATLDAIITHFYRLIEITKMGESEEEYADKLATSLSREILRP---IIESLLTIG 189
>gnl|CDD|111045 pfam02106, Fanconi_C, Fanconi anaemia group C protein.
Length = 559
Score = 27.1 bits (60), Expect = 2.0
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 9 LKLVLVVH--ELP-EHHFQTLKYILQHLKRVVDNSEV----NKMEARNLAIMFG 55
L + L+ H E+P H Q LK+I + LK +V++ E+ L + FG
Sbjct: 349 LVMALLQHPSEIPRGHWLQHLKHISELLKEIVEDETHGSYGGPFESWFLFVHFG 402
>gnl|CDD|239866 cd04401, RhoGAP_fMSB1, RhoGAP_fMSB1: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
fungal MSB1-like proteins. Msb1 was originally
identified as a multicopy suppressor of temperature
sensitive cdc42 mutation. Msb1 is a positive regulator
of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis,
both pathways involve Rho1 regulation. Small GTPases
cluster into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 198
Score = 26.9 bits (60), Expect = 2.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 33 LKRVVDNSEVNKMEARNLAIMFGP 56
L + +S VN M R L+ M GP
Sbjct: 136 LSSIAAHSSVNGMSGRKLSKMAGP 159
>gnl|CDD|217834 pfam03998, Utp11, Utp11 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 239
Score = 26.6 bits (59), Expect = 2.4
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 24 QTLKYILQHLKRVVDNSEVNKMEARNLAIMFG 55
Q L Y+ KR + ++ K++ G
Sbjct: 89 QDLNYVRT--KRQAEAKKIEKLKEELHLTDSG 118
>gnl|CDD|235570 PRK05703, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 424
Score = 26.8 bits (60), Expect = 2.7
Identities = 7/39 (17%), Positives = 17/39 (43%)
Query: 19 PEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPT 57
P +Y+L+ L ++ + ++ + + GPT
Sbjct: 192 PPRERTAWRYLLELLANMIPVRVEDILKQGGVVALVGPT 230
>gnl|CDD|236208 PRK08262, PRK08262, hypothetical protein; Provisional.
Length = 486
Score = 26.1 bits (58), Expect = 3.7
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 29 ILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSW 67
+L H++R V + V E L P+ V + D ++
Sbjct: 369 VLAHVRRAVADDRV---EIEVLGGNSEPSPVSSTDSAAY 404
>gnl|CDD|233413 TIGR01441, GPR, GPR endopeptidase. This model describes a
tetrameric protease that makes the rate-limiting first
cut in the small, acid-soluble spore proteins (SASP) of
Bacillus subtilis and related species. The enzyme lacks
clear homology to other known proteases. It processes
its own amino end before becoming active to cleave SASPs
[Protein fate, Degradation of proteins, peptides, and
glycopeptides, Cellular processes, Sporulation and
germination].
Length = 358
Score = 26.1 bits (57), Expect = 3.8
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 25 TLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFYKLLGA 80
T+ Y+L+H R V + ++ A + FG +D F LLG
Sbjct: 243 TIDYVLKHFGREVSEDKPSRALAPA-GMTFGERRELTDEDLPPEEKRKTFLGLLGT 297
>gnl|CDD|163660 cd07417, MPP_PP5_C, PP5, C-terminal metallophosphatase domain.
Serine/threonine protein phosphatase-5 (PP5) is a member
of the PPP gene family of protein phosphatases that is
highly conserved among eukaryotes and widely expressed
in mammalian tissues. PP5 has a C-terminal phosphatase
domain and an extended N-terminal TPR (tetratricopeptide
repeat) domain containing three TPR motifs. The PPP
(phosphoprotein phosphatase) family, to which PP5
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 316
Score = 25.7 bits (57), Expect = 5.0
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 62 GD--DR-SWTC----LVFGFYKLLGAHFHVSSGNVRKVSVDKFY 98
GD DR S++ +F F L HFH++ GN +++K Y
Sbjct: 95 GDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMY 138
>gnl|CDD|214006 cd12807, Esterase_713, Novel bacterial esterase 713 that cleaves
esters on halogenated cyclic compounds. This family
contains proteins similar to a novel bacterial esterase
(esterase 713) with the alpha/beta hydrolase fold that
cleaves esters on halogenated cyclic compounds. This
Alcaligenes esterase, however, does not contain the
GXSXXG pentapeptide around the active site serine
residue as seen in other esterase families. This enzyme
is active as a dimer though its natural substrate is
unknown. It has two distinct disulfide bridges; one
formed between adjacent cysteines appears to facilitate
the correct formation of the oxyanion cleft in the
catalytic site. Esterase 713 also resembles human
pancreatic lipase in its location of the acidic residue
of the catalytic triad. It is possibly exported from the
cytosol to the periplasmic space. A large majority of
sequences in this family have yet to be characterized.
Length = 315
Score = 25.7 bits (57), Expect = 5.4
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 38 DNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFG 73
D + +N ++ P + RAGD+ +WT FG
Sbjct: 104 DPTIINAVKLGLAPPSALPAIFRAGDEFAWTNFRFG 139
>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase
(ASL)_like. This group contains ASL, prokaryotic-type
3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and
related proteins. These proteins are members of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and; the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). pCMLE catalyzes the
cyclization of 3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone, in the beta-ketoadipate
pathway. ASL deficiency has been linked to several
pathologies including psychomotor retardation with
autistic features, epilepsy and muscle wasting.
Length = 381
Score = 25.2 bits (56), Expect = 9.6
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 15/55 (27%)
Query: 23 FQTLKYILQHLKRVVDNSEVNK--MEARNL----------AIMFGPTLVRAGDDR 65
F L L L+ +++ VN M RNL A+M L + G R
Sbjct: 315 FLLLDAALSRLQGLLEGLVVNPERMR-RNLDLTWGLILSEAVMMA--LAKKGLGR 366
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.142 0.449
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,361,330
Number of extensions: 440669
Number of successful extensions: 541
Number of sequences better than 10.0: 1
Number of HSP's gapped: 539
Number of HSP's successfully gapped: 56
Length of query: 107
Length of database: 10,937,602
Length adjustment: 72
Effective length of query: 35
Effective length of database: 7,744,114
Effective search space: 271043990
Effective search space used: 271043990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.1 bits)