RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5715
(107 letters)
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase,
tpase activating protein, CDC42, phosphoinositide
3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP:
a.116.1.1
Length = 216
Score = 89.7 bits (223), Expect = 7e-24
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 8 QLKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD 64
LK ++ +P ++ TL+Y+L+H ++ S N + AR L+ +F P L R
Sbjct: 119 LLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFSAA 175
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH
domain, signaling protein; 2.40A {Gallus gallus} SCOP:
a.116.1.1
Length = 231
Score = 88.9 bits (221), Expect = 2e-23
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 14 VVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD 64
+VH LPE + Q L ++ HL +V DN + N M NL ++FGPTL+R ++
Sbjct: 140 LVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQEE 190
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.80A {Homo sapiens}
Length = 202
Score = 88.0 bits (219), Expect = 2e-23
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 14 VVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLV 71
+ LP H +TL+Y++ HLKRV + + N M A NL I+FGPTL+R+ + + L
Sbjct: 125 ALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALN 182
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural
genomics consortium, signaling protein; 2.25A {Homo
sapiens}
Length = 214
Score = 87.7 bits (218), Expect = 3e-23
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 14 VVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD 64
+V +LP + T+K + HL ++V + N M ++L I+FGPTL+RA ++
Sbjct: 135 LVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVFGPTLLRAENE 185
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein,
GTPase-activating protein for RHO family members,
structural genomics, NPPSFA; NMR {Homo sapiens} PDB:
2ee5_A
Length = 209
Score = 86.9 bits (216), Expect = 6e-23
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 14 VVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD 64
+V + ++ +Y++ HL RV ++N M A NL+I F PTL+R +
Sbjct: 126 IVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMRPDFE 176
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics
consortium, GTPase-activating protein, SGC, alternative
splicing, anti-oncogene; 2.80A {Homo sapiens}
Length = 246
Score = 87.4 bits (217), Expect = 9e-23
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 14 VVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD 64
V+ + P+ + + KY++ HL +V N++VN M + NL+I F PTL+R
Sbjct: 167 VLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMRPDFS 217
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics
consortium (SGC), GAP, alternative splicing, cell
junction, cell membrane; 1.77A {Homo sapiens}
Length = 229
Score = 87.0 bits (216), Expect = 1e-22
Identities = 19/53 (35%), Positives = 35/53 (66%)
Query: 14 VVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRS 66
V+ +LP H++TL+++++HL + D + M A+NLAI++ P L+R+ S
Sbjct: 137 VIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIES 189
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 89.6 bits (222), Expect = 1e-22
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 14 VVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLV 71
+ LP H +TL+Y++ HLKRV + + N M A NL I+FGPTL+R+ + + L
Sbjct: 386 ALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALN 443
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase,
transition state, GAP; HET: GDP; 1.65A {Homo sapiens}
SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Length = 198
Score = 85.4 bits (212), Expect = 2e-22
Identities = 20/51 (39%), Positives = 33/51 (64%)
Query: 14 VVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD 64
V+ LPE ++Q L+++ L ++ +S+ NKM NLA++FGP L+ A D
Sbjct: 123 VLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDA 173
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition
state, gene regulation/signaling protein complex; HET:
GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A
2ngr_B*
Length = 242
Score = 85.9 bits (213), Expect = 3e-22
Identities = 20/51 (39%), Positives = 33/51 (64%)
Query: 14 VVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD 64
V+ LPE ++Q L+++ L ++ +S+ NKM NLA++FGP L+ A D
Sbjct: 159 VLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDA 209
>3msx_B RHO GTPase-activating protein 20; protein-proten complex,
transition state, protein BI; HET: GDP; 1.65A {Homo
sapiens}
Length = 201
Score = 83.8 bits (208), Expect = 9e-22
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 14 VVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRS 66
++ +LP + L+Y+ L + +S N+M A NLA+ P+++ S
Sbjct: 123 LLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSILWPPASSS 175
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural
genomics consortium, SGC, transferase; 2.09A {Homo
sapiens}
Length = 214
Score = 82.9 bits (205), Expect = 2e-21
Identities = 21/63 (33%), Positives = 27/63 (42%)
Query: 8 QLKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRSW 67
+ L LP H TL+++LQHL RV + R L FGP L+RA S
Sbjct: 120 PVGPALEPPTLPLHRALTLRFLLQHLGRVARRAPALGPAVRALGATFGPLLLRAPPPPSS 179
Query: 68 TCL 70
Sbjct: 180 PPP 182
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein,
structural genomics, structural genomics consortium,
SGC; HET: 7PE; 1.49A {Homo sapiens}
Length = 201
Score = 81.9 bits (203), Expect = 5e-21
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 14 VVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRS 66
V ELP+ + TL +++ HL+RV S KM+ NLA +FGPT+V
Sbjct: 116 AVGELPQANRDTLAFLMIHLQRVAQ-SPHTKMDVANLAKVFGPTIVAHAVPNP 167
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium,
GTPase activation, SGC, alternative splicing, cytoplasm,
phosphoprotein; 2.30A {Homo sapiens}
Length = 228
Score = 82.0 bits (203), Expect = 8e-21
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 10 KLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRS 66
+ + LP+ + + L+ +L L V + N+M NLA+ P+L +
Sbjct: 130 AIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSLFHLNTLKR 186
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics
consortium, GTPase activation, phosphoprotein,
polymorphism hydrolase activator, SGC; 2.30A {Homo
sapiens}
Length = 271
Score = 81.3 bits (201), Expect = 3e-20
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 11 LVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRS 66
+L+ L +H L+Y L+ V S NKM++ NLA++F P L++ +
Sbjct: 174 TLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHE 229
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1,
RAB gtpases, APPL1, endocytic PATH golgi complex,
hydrolase-protein binding complex; 2.30A {Homo sapiens}
PDB: 2qv2_A
Length = 366
Score = 77.7 bits (191), Expect = 2e-18
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 14 VVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD 64
V+ +LP H +Y++ L+ ++ SE N + A +A +F L+R +
Sbjct: 289 VISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPPPN 339
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.24
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 6/29 (20%)
Query: 24 QTLKYILQHLKRVVDNSEVNKMEARNLAI 52
Q LK + LK D+S A LAI
Sbjct: 20 QALKKLQASLKLYADDS------APALAI 42
Score = 27.2 bits (59), Expect = 0.94
Identities = 6/29 (20%), Positives = 14/29 (48%), Gaps = 7/29 (24%)
Query: 38 DNSEVNKMEARNLAIMF----GPTL-VRA 61
+ + K++A L ++ P L ++A
Sbjct: 18 EKQALKKLQAS-LK-LYADDSAPALAIKA 44
>1rj5_A Carbonic anhydrase XIV; beta-sheet, alpha-helix, zinc enzyme,
lyase; HET: NAG BMA; 2.81A {Mus musculus} SCOP: b.74.1.1
PDB: 1rj6_A*
Length = 261
Score = 27.8 bits (62), Expect = 0.62
Identities = 14/88 (15%), Positives = 23/88 (26%), Gaps = 15/88 (17%)
Query: 6 DFQLKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDR 65
+ Q V+ +LP + + +N + + PTL G R
Sbjct: 32 NIQTDSVIFDPDLPAVQPHGYDQLGTEPLDLHNNGH-------TVQLSLPPTLHLGGLPR 84
Query: 66 SWTCLVFGFYKLLGAHFHVSSGNVRKVS 93
Y H H + S
Sbjct: 85 K--------YTAAQLHLHWGQRGSLEGS 104
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum
aerophilum} SCOP: a.127.1.1
Length = 403
Score = 27.6 bits (62), Expect = 0.68
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 12/58 (20%)
Query: 18 LPEHHFQTLKYILQHLKRVVDNSEVN--KMEARNLAIMFG--------PTLVRAGDDR 65
+PE L IL RV+ N ++ ++ NL +++ G R
Sbjct: 313 IPEA-LLALDEILTSALRVLKNVYIDEERIT-ENLQKALPYILTEFHMNRMIKEGASR 368
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis;
2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Length = 444
Score = 27.3 bits (61), Expect = 1.0
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 18 LPEHHFQTLKYILQHLKRVVDNSEVN--KMEARNLAIMFG 55
LP+ L Y+L +V N V M+ RN+ +G
Sbjct: 324 LPDA-TIALNYMLNRFGNIVKNLTVYPENMK-RNMTRTYG 361
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A
{Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Length = 429
Score = 27.2 bits (61), Expect = 1.1
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 18 LPEHHFQTLKYILQHLKRVVDNSEVN--KMEARNLAIMFG 55
P+ QTL Y++ VV N +VN +M+ +N+ + G
Sbjct: 312 FPDA-TQTLYYMIVTATNVVRNMKVNEERMK-KNIDLTKG 349
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic
degradation; 2.30A {Acinetobacter calcoaceticus} SCOP:
a.127.1.1
Length = 454
Score = 26.9 bits (60), Expect = 1.2
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 18 LPEHHFQTLKYILQHLKRVVDNSEVN--KMEARNLAIMFG 55
LPE FQ L+ V+ EVN M +N+ G
Sbjct: 331 LPEI-FQLTAGALERTLDVLKGMEVNAENM-HQNIECTHG 368
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase
class II cycloisomerase, molecular EV isomerase; HET:
CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Length = 450
Score = 26.9 bits (60), Expect = 1.3
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 18 LPEHHFQTLKYILQHLKRVVDNSEVN--KMEARNLAIMFG 55
LP+ + L+ + + + EV+ +M RNL + G
Sbjct: 327 LPDI-CCLVSGALRQAQVIAEGMEVDAARM-RRNLDLTQG 364
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: AMP;
1.92A {Francisella tularensis subsp}
Length = 438
Score = 26.9 bits (60), Expect = 1.4
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 18 LPEHHFQTLKYILQHLKRVVDNSEVN--KMEARNLAIMFG 55
LP++ F + Y L+ +K +DN V +E +
Sbjct: 313 LPDN-FGIMVYALRRMKNTIDNLVVQRDIIE-DRVRSTSA 350
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure
initiat YORK SGX research center for structural
genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Length = 451
Score = 26.9 bits (60), Expect = 1.4
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 18 LPEHHFQTLKYILQHLKRVVDNSEVN--KMEARNLAIMFG 55
+PE F IL + ++ +V +M NL G
Sbjct: 325 VPEG-FAVASGILYQAEFMLGGLQVFPDRM-RENLDHSRG 362
>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2-
keto-3-deoxygluconate kinase; 2.00A {Sulfolobus
solfataricus} PDB: 2var_A*
Length = 313
Score = 26.4 bits (59), Expect = 1.8
Identities = 7/50 (14%), Positives = 14/50 (28%), Gaps = 6/50 (12%)
Query: 27 KYILQHLKRV-VDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFY 75
K I+++ + +D S + I F +Y
Sbjct: 63 KNIIEYSRAQGIDTSHIKVDNESFTGIYFIQRGYPIPMKSE-----LVYY 107
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 26.0 bits (57), Expect = 2.8
Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 14/63 (22%)
Query: 12 VLVVHELPEHHFQTL------KYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDR 65
+VVH P++ + + +Y+ + R M L + +
Sbjct: 1454 AIVVH--PDYLYGAITEDRYNEYVAKVSARE------KSAYKFFHNGMIYNKLFVSKEHA 1505
Query: 66 SWT 68
+T
Sbjct: 1506 PYT 1508
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino
AMP-lyase, purin biosynthesis, adenylosuccinase DEFI
AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens}
PDB: 2vd6_A*
Length = 503
Score = 25.7 bits (57), Expect = 3.2
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 10/57 (17%)
Query: 18 LPEHHFQTLKYILQHLKRVVDNSEVN-KMEARNLAIMFG--------PTLVRAGDDR 65
L E F T IL L+ + + V K+ R + +V+AG R
Sbjct: 363 LAEA-FLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSR 418
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure
initiative, southeast collaboratory for structura
genomics, secsg; 2.40A {Caenorhabditis elegans}
Length = 478
Score = 25.7 bits (57), Expect = 3.3
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 10/57 (17%)
Query: 18 LPEHHFQTLKYILQHLKRVVDNSEVN-KMEARNLAIMFG--------PTLVRAGDDR 65
+P+ T + +L L+ + + V + + L G DR
Sbjct: 337 IPDV-LLTAEALLTTLQNIFEGLSVQTDNVKKIVEDEIAFLGLEKAMMMLTEEGVDR 392
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL;
1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A*
1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A*
2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B*
3b9j_A* 1fiq_A*
Length = 1332
Score = 25.6 bits (56), Expect = 4.1
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 11 LVLVVHELPEHHFQTLKYILQHLKRV 36
L+ V +LP + + +L+ L+
Sbjct: 312 LLEAVAKLPTQKTEVFRGVLEQLRWF 337
>3la4_A Urease; JACK bean, hydrolase, ME binding, nickel; HET: CME KCX;
2.05A {Canavalia ensiformis}
Length = 840
Score = 25.6 bits (56), Expect = 4.6
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 7/54 (12%)
Query: 21 HHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPT---LVRAGDDRSWTCLV 71
H + K + + + A +GPT +R GD T L+
Sbjct: 250 GHEEEKDASEGFTKEDPNCPFNTFIHRKEYANKYGPTTGDKIRLGD----TNLL 299
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV,
allergen, antimicrobial, bacteriolytic enzyme,
glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo
sapiens} PDB: 2znw_A*
Length = 242
Score = 25.2 bits (55), Expect = 5.4
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 55 GPTLVRAGDDRSWTCLVFGF 74
GP+LV+ S TC V G
Sbjct: 130 GPSLVKPSQTLSLTCSVTGD 149
>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto-
gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus
tokodaii} SCOP: c.72.1.1 PDB: 1wye_A*
Length = 311
Score = 25.2 bits (56), Expect = 5.5
Identities = 7/50 (14%), Positives = 13/50 (26%), Gaps = 6/50 (12%)
Query: 27 KYILQHLKRV-VDNSEVNKMEARNLAIMFGPTLVRAGDDRSWTCLVFGFY 75
++ L+ VD S + + I F +Y
Sbjct: 63 YNAIEWLRGQGVDVSHMKIDPSAPTGIFFIQRHYPVPLKSE-----SIYY 107
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK
structural genomi research consortium, TIM barrel; HET:
PLP; 1.90A {Agrobacterium tumefaciens}
Length = 244
Score = 24.4 bits (54), Expect = 7.5
Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 17/71 (23%)
Query: 2 YCVQDFQLKLV-L----VVHELPEHHFQTLKYILQHLKRVVDN-----SEVNKMEARNLA 51
+C + +L + L E P HF L + ++ S E A
Sbjct: 152 FCRDELKLPVEGLMCIPPAEENPGPHFALLAKLAGQCG--LEKLSMGMS--GDFET---A 204
Query: 52 IMFGPTLVRAG 62
+ FG T VR G
Sbjct: 205 VEFGATSVRVG 215
>4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel,
acetohydroxamic acid, metalloenzyme, hydrolase; HET:
KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1
c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C*
Length = 570
Score = 24.6 bits (53), Expect = 8.8
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 3/23 (13%)
Query: 44 KMEARNLAIMFGPT---LVRAGD 63
K+ + A +GPT VR D
Sbjct: 2 KINRQQYAESYGPTVGDEVRLAD 24
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix,
structural; 1.70A {Homo sapiens}
Length = 86
Score = 23.7 bits (52), Expect = 9.4
Identities = 8/45 (17%), Positives = 21/45 (46%), Gaps = 9/45 (20%)
Query: 4 VQDFQLKL--VLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKME 46
+ + KL ++ E E+ Q+ + + VDN+ + +++
Sbjct: 30 IMRLREKLQEEMLQREEAENTLQSFR-------QDVDNASLARLD 67
>3iai_A Carbonic anhydrase 9; transmembrane proteins, cell membrane,
projection, disulfide bond, glycoprotein, lyase,
membrane, binding, nucleus; HET: AZM NAG BMA MAN; 2.20A
{Homo sapiens}
Length = 257
Score = 24.3 bits (53), Expect = 9.7
Identities = 10/86 (11%), Positives = 20/86 (23%), Gaps = 16/86 (18%)
Query: 6 DFQLKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTL-VRAGDD 64
D + +L L + R+ +N G ++ +
Sbjct: 31 DIRPQLAAFSPALRPLELLGFQLPPLPELRLRNN---------------GHSVQLTLPPG 75
Query: 65 RSWTCLVFGFYKLLGAHFHVSSGNVR 90
Y+ L H H +
Sbjct: 76 LEMALGPGREYRALQLHLHWGAAGRP 101
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.142 0.449
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,649,966
Number of extensions: 84504
Number of successful extensions: 287
Number of sequences better than 10.0: 1
Number of HSP's gapped: 286
Number of HSP's successfully gapped: 47
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.9 bits)