RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5715
(107 letters)
>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 184
Score = 62.0 bits (150), Expect = 6e-14
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 10 KLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDRS 66
K ++ +P ++ TL+Y+L+H ++ S N + AR L+ +F P L R S
Sbjct: 110 KKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFSAASS 166
>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 196
Score = 57.5 bits (138), Expect = 4e-12
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 10 KLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD 64
+ V+ LPE ++Q L+++ L ++ +S+ NKM NLA++FGP L+ A D
Sbjct: 117 ATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDA 171
>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 191
Score = 56.3 bits (135), Expect = 9e-12
Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 1 MYCVQDFQLKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVR 60
+ + ++ +VH LPE + Q L ++ HL +V DN + N M NL ++FGPTL+R
Sbjct: 97 LENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLR 156
Query: 61 AGDD 64
++
Sbjct: 157 PQEE 160
>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 196
Score = 54.8 bits (131), Expect = 4e-11
Identities = 27/70 (38%), Positives = 42/70 (60%)
Query: 1 MYCVQDFQLKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVR 60
+ + + V+ LP H++TL+Y++ HLK+V N + N M A NL I+FGPTL+R
Sbjct: 106 ISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLGIVFGPTLMR 165
Query: 61 AGDDRSWTCL 70
+D + T L
Sbjct: 166 PPEDSTLTTL 175
>d4ubpc1 b.92.1.1 (C:1-131,C:435-483) alpha-Subunit of urease
{Bacillus pasteurii [TaxId: 1474]}
Length = 180
Score = 25.8 bits (57), Expect = 1.0
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 7/31 (22%)
Query: 44 KMEARNLAIMFGPT---LVRAGDDRSWTCLV 71
K+ + A +GPT VR D T L
Sbjct: 2 KINRQQYAESYGPTVGDEVRLAD----TDLW 28
>d1bhua_ b.11.1.3 (A:) Streptomyces metalloproteinase inhibitor,
SMPI {Streptomyces nigrescens [TaxId: 1920]}
Length = 102
Score = 24.4 bits (52), Expect = 2.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 79 GAHFHVSSGNVRKVSVDKFYCIFTPTV 105
G HF + G RKV+ +F C TV
Sbjct: 49 GTHFTLRYGPARKVTCVRFPCYQYATV 75
>d1e9yb1 b.92.1.1 (B:1-131,B:432-480) alpha-Subunit of urease
{Helicobacter pylori [TaxId: 210]}
Length = 180
Score = 24.7 bits (54), Expect = 2.5
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Query: 44 KMEARNLAIMFGPT---LVRAGDDRSWTCLV 71
K+ + M+GPT VR GD T L+
Sbjct: 3 KISRKEYVSMYGPTTGDKVRLGD----TDLI 29
>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus
jannaschii [TaxId: 2190]}
Length = 100
Score = 24.0 bits (52), Expect = 2.7
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 75 YKLLGAHFHVSSGNVRKVSVDK 96
+ G +++ +R VSVDK
Sbjct: 78 FGDFGKKSFLNNNLIRDVSVDK 99
>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable
domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId:
9606]}
Length = 120
Score = 24.3 bits (52), Expect = 3.0
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 55 GPTLVRAGDDRSWTCLVFGF 74
G L++ + S TC V+G
Sbjct: 8 GAGLLKPSETLSLTCAVYGG 27
>d1ejxc1 b.92.1.1 (C:1002-1129,C:1423-1475) alpha-Subunit of
urease {Klebsiella aerogenes [TaxId: 28451]}
Length = 181
Score = 24.0 bits (52), Expect = 4.3
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 7/31 (22%)
Query: 44 KMEARNLAIMFGPT---LVRAGDDRSWTCLV 71
+ + A MFGPT VR D T L
Sbjct: 2 NISRQAYADMFGPTVGDKVRLAD----TELW 28
>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId:
10090]}
Length = 127
Score = 23.9 bits (51), Expect = 4.6
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 55 GPTLVRAGDDRSWTCLVFGFYKLLGAHFH 83
G LV+ S TC V G+ G +++
Sbjct: 8 GAGLVQPSQSLSLTCSVTGYSITSGYYWN 36
>d1em8b_ c.126.1.1 (B:) DNA polymerase III psi subunit
{Escherichia coli [TaxId: 562]}
Length = 110
Score = 23.5 bits (51), Expect = 5.4
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 8 QLKLVLVVHELPEHHFQTLKYILQHLKRVVDNSEV 42
++LV+V ++LP + +L+ L V +V
Sbjct: 10 HVRLVMVANDLPALTDPLVSDVLRALT--VSPDQV 42
>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable
domain, VH {Engineered (including hybrid species)}
Length = 125
Score = 23.2 bits (49), Expect = 6.7
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 55 GPTLVRAGDDRSWTCLVFGF 74
G LV+AG +C V F
Sbjct: 8 GGGLVKAGGSLILSCGVSNF 27
>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId:
10090]}
Length = 119
Score = 23.2 bits (49), Expect = 6.8
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 55 GPTLVRAGDDRSWTCLVFGF 74
GP LV+ S TC V G+
Sbjct: 8 GPGLVKPSQSLSLTCTVTGY 27
>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId:
10090]}
Length = 119
Score = 23.2 bits (49), Expect = 6.9
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 55 GPTLVRAGDDRSWTCLVFGF 74
G LV+ G +C G+
Sbjct: 8 GTELVKPGASVKISCKASGY 27
>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId:
10090]}
Length = 116
Score = 23.1 bits (49), Expect = 7.2
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 55 GPTLVRAGDDRSWTCLVFGF 74
G LV+ G +C G+
Sbjct: 8 GAELVKPGASVKLSCKASGY 27
>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId:
10090]}
Length = 117
Score = 23.2 bits (49), Expect = 7.2
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 55 GPTLVRAGDDRSWTCLVFGF 74
GP LV+ G +C +
Sbjct: 7 GPVLVKPGGSVKMSCKASEY 26
>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId:
10090]}
Length = 115
Score = 23.1 bits (49), Expect = 7.3
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 55 GPTLVRAGDDRSWTCLVFGF 74
GP LV+ G +C G+
Sbjct: 8 GPELVKPGASVKVSCKASGY 27
>d2jb0b1 d.4.1.1 (B:449-572) DNase domain of colicin E7 {Escherichia
coli [TaxId: 562]}
Length = 124
Score = 22.7 bits (49), Expect = 8.8
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 18 LPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIM 53
+ + + L H K + N V M+ N++++
Sbjct: 83 TQDVSGKRTSFELHHEKPISQNGGVYDMD--NISVV 116
>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId:
10090]}
Length = 118
Score = 22.7 bits (48), Expect = 9.0
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 55 GPTLVRAGDDRSWTCLVFGF 74
G LV+ G + +C GF
Sbjct: 8 GGDLVKPGGSLTLSCEASGF 27
>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId:
10090]}
Length = 120
Score = 22.8 bits (48), Expect = 10.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 55 GPTLVRAGDDRSWTCLVFGF 74
GP +++ S TC+V GF
Sbjct: 8 GPAVIKPSQSLSLTCIVSGF 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.329 0.142 0.449
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 401,372
Number of extensions: 16140
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 51
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.4 bits)