BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5716
(294 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1)
Length = 463
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 163 TAAVSSLTEAVNKGLDASVLEQD---PRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFI 219
+ S L E V D + D + D+N+I+ LK +FR LP L+T + YP FI
Sbjct: 309 VSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFI 368
Query: 220 QADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGP 279
++ KI DP ++ T+ + + LP H +TL+Y++ HLKRV + + N M A NL I+FGP
Sbjct: 369 ESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGP 428
Query: 280 TLVRA 284
TL+R+
Sbjct: 429 TLMRS 433
>pdb|2OSA|A Chain A, The Rho-Gap Domain Of Human N-Chimaerin
Length = 202
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 163 TAAVSSLTEAVNKGLDASVLEQD---PRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFI 219
+ S L E V D + D + D+N+I+ LK +FR LP L+T + YP FI
Sbjct: 48 VSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFI 107
Query: 220 QADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGP 279
++ KI DP ++ T+ + + LP H +TL+Y++ HLKRV + + N M A NL I+FGP
Sbjct: 108 ESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGP 167
Query: 280 TLVRA 284
TL+R+
Sbjct: 168 TLMRS 172
>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|B Chain B, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|C Chain C, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|D Chain D, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
Length = 214
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
RV GN A + L VN+ + + D +W D++V++ LK FFR LP+ L +
Sbjct: 58 RVSGNLATIQKLRFIVNQ--EEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQ 115
Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
F++A K +D TR+ +K LV +LP + T+K + HL ++V + N M ++L I+F
Sbjct: 116 FVEAIKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVF 175
Query: 278 GPTLVRAGDD 287
GPTL+RA ++
Sbjct: 176 GPTLLRAENE 185
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin
Length = 466
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 81/134 (60%), Gaps = 1/134 (0%)
Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
RV G T + + A ++ + + + + + D+N+I+ LK +FR LP ++T + Y
Sbjct: 311 RVSGFTEHIEDVKMAFDRDGEKADISANV-YPDINIITGALKLYFRDLPIPVITYDTYSK 369
Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
FI A KI + R+ + +++ LP H++TL+Y++ HLK+V N + N M A NL I+F
Sbjct: 370 FIDAAKISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLGIVF 429
Query: 278 GPTLVRAGDDNMVT 291
GPTL+R +D+ +T
Sbjct: 430 GPTLMRPPEDSTLT 443
>pdb|1F7C|A Chain A, Crystal Structure Of The Bh Domain From Graf, The Gtpase
Regulator Associated With Focal Adhesion Kinase
Length = 231
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 188 WSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQ 247
W ++ I+S LK++ R LP L+ + FI+A K+E+ +R++ I LVH LPE + Q
Sbjct: 92 W-EIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQ 150
Query: 248 TLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTMV 293
L ++ HL +V DN + N M NL ++FGPTL+R ++ + ++
Sbjct: 151 MLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQEETVAAIM 196
>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|B Chain B, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|C Chain C, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|D Chain D, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
Length = 246
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 73/126 (57%), Gaps = 3/126 (2%)
Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
RV GN + + SL ++ + + E+D VN ++ +KSFF LPD L+ +
Sbjct: 91 RVSGNKSEMESLQRQFDQDHNLDLAEKD---FTVNTVAGAMKSFFSELPDPLVPYNMQID 147
Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
++A KI D ++ +K+++ + P+ + + KY++ HL +V N++VN M + NL+I F
Sbjct: 148 LVEAHKINDREQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICF 207
Query: 278 GPTLVR 283
PTL+R
Sbjct: 208 WPTLMR 213
>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics
pdb|3IUG|B Chain B, Crystal Structure Of The Rhogap Domain Of Rics
Length = 229
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 62/103 (60%)
Query: 182 LEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHEL 241
L ++P D++ + SL K +FR LP+ LLT +LY F A R+ I ++ +L
Sbjct: 82 LTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQL 141
Query: 242 PEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRA 284
P H++TL+++++HL + D + M A+NLAI++ P L+R+
Sbjct: 142 PPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRS 184
>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1RGP|A Chain A, Gtpase-Activation Domain From Rhogap
Length = 242
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 74/129 (57%), Gaps = 5/129 (3%)
Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
R NT V + + N GL +++++++ + +LK+F R LP+ LLT +LYPH
Sbjct: 85 RRSANTQVVREVQQKYNMGLPVDF----DQYNELHLPAVILKTFLRELPEPLLTFDLYPH 140
Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
+ I D + R+ +++ LPE ++Q L+++ L ++ +S+ NKM NLA++F
Sbjct: 141 VVGFLNI-DESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVF 199
Query: 278 GPTLVRAGD 286
GP L+ A D
Sbjct: 200 GPNLLWAKD 208
>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap
Length = 234
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 73/126 (57%), Gaps = 5/126 (3%)
Query: 161 GNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQ 220
NT V + + N GL +++++++ + +LK+F R LP+ LLT +LYPH +
Sbjct: 80 ANTQVVREVQQKYNMGLPVDF----DQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVG 135
Query: 221 ADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPT 280
I D + R+ +++ LPE ++Q L+++ L ++ +S+ NKM NLA++FGP
Sbjct: 136 FLNI-DESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPN 194
Query: 281 LVRAGD 286
L+ A D
Sbjct: 195 LLWAKD 200
>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap
Domain From Human Rho Gtpase Activating Protein 5
Variant
Length = 219
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Query: 151 LCPFLFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLL 210
LC RV GN ++ + ++ + +++ + VN ++ LK+FF LPD L+
Sbjct: 53 LCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSME---VTVNAVAGALKAFFADLPDPLI 109
Query: 211 TTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEA 270
L+P ++A KI D R+ +K++V + ++ +Y++ HL RV ++N M A
Sbjct: 110 PYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTA 169
Query: 271 RNLAIMFGPTLVRAGDDN 288
NL+I F PTL+R +N
Sbjct: 170 DNLSICFWPTLMRPDFEN 187
>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|B Chain B, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|C Chain C, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 199
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 73/126 (57%), Gaps = 5/126 (3%)
Query: 161 GNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQ 220
NT V + + N GL +++++++ + +LK+F R LP+ LLT +LYPH +
Sbjct: 53 ANTQVVREVQQKYNMGLPVDF----DQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVG 108
Query: 221 ADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPT 280
I D + R+ +++ LPE ++Q L+++ L ++ +S+ NKM NLA++FGP
Sbjct: 109 FLNI-DESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPN 167
Query: 281 LVRAGD 286
L+ A D
Sbjct: 168 LLWAKD 173
>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX
Length = 203
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 74/129 (57%), Gaps = 5/129 (3%)
Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
R NT V + + N GL +++++++ + +LK+F R LP+ LLT +LYPH
Sbjct: 46 RRSANTQVVREVQQKYNMGLPVDF----DQYNELHLPAVILKTFLRELPEPLLTFDLYPH 101
Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
+ I D + R+ +++ LPE ++Q L+++ L ++ +S+ NKM NLA++F
Sbjct: 102 VVGFLNI-DESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVF 160
Query: 278 GPTLVRAGD 286
GP L+ A D
Sbjct: 161 GPNLLWAKD 169
>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho
Gtpase Activating Protein 5 Variant
Length = 209
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Query: 151 LCPFLFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLL 210
LC RV GN ++ + ++ + +++ + VN ++ LK+FF LPD L+
Sbjct: 43 LCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSME---VTVNAVAGALKAFFADLPDPLI 99
Query: 211 TTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEA 270
L+P ++A KI D R+ +K++V + ++ +Y++ HL RV ++N M A
Sbjct: 100 PYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTA 159
Query: 271 RNLAIMFGPTLVRAGDDN 288
NL+I F PTL+R +N
Sbjct: 160 DNLSICFWPTLMRPDFEN 177
>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 198
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 73/129 (56%), Gaps = 5/129 (3%)
Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
R NT V + + N GL +++ +++ + +LK+F R LP+ LLT +LYPH
Sbjct: 49 RRSANTQVVREVQQKYNMGLPVDF----DQYNALHLPAVILKTFLRELPEPLLTFDLYPH 104
Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
+ I D + R+ +++ LPE ++Q L+++ L ++ +S+ NKM NLA++F
Sbjct: 105 VVGFLNI-DESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVF 163
Query: 278 GPTLVRAGD 286
GP L+ A D
Sbjct: 164 GPNLLWAKD 172
>pdb|2OVJ|A Chain A, The Crystal Structure Of The Human Rac Gtpase Activating
Protein 1 (Racgap1) Mgcracgap
Length = 201
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 4/125 (3%)
Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
R+ G V L E K L + + D++ I SLLK F R L + LLT L
Sbjct: 40 RISGCDRTVKELKE---KFLRVKTVPLLSKVDDIHAICSLLKDFLRNLKEPLLTFRLNRA 96
Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
F++A +I D +A + + V ELP+ + TL +++ HL+RV + KM+ NLA +F
Sbjct: 97 FMEAAEITDEDNSIAAMYQAVGELPQANRDTLAFLMIHLQRVAQSPH-TKMDVANLAKVF 155
Query: 278 GPTLV 282
GPT+V
Sbjct: 156 GPTIV 160
>pdb|3MSX|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 201
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 66/125 (52%), Gaps = 5/125 (4%)
Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
R N + L E +N G++ + + VI+S+LK F R +P S+ +++LY H
Sbjct: 49 RQSANVKSCRELKEKLNSGVEVHL-----DCESIFVIASVLKDFLRNIPGSIFSSDLYDH 103
Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
++ + ++ T+++L+ +LP + L+Y+ L + +S N+M A NLA+
Sbjct: 104 WVSVMDQGNDEEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCV 163
Query: 278 GPTLV 282
P+++
Sbjct: 164 APSIL 168
>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|B Chain B, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|C Chain C, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|D Chain D, Crystal Structure Of The Rhogap Domain Of Arhgap11a
Length = 271
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 194 ISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYIL 253
I+ LLK FFR LP+ +L +L+ ++A ++ AT+ L L +H L+Y
Sbjct: 135 IAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLL-LSCLLADHTVHVLRYFF 193
Query: 254 QHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDN 288
L+ V S NKM++ NLA++F P L++ + +
Sbjct: 194 NFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGH 228
>pdb|1PBW|A Chain A, Structure Of Bcr-Homology (Bh) Domain
pdb|1PBW|B Chain B, Structure Of Bcr-Homology (Bh) Domain
Length = 216
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 163 TAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQ-A 221
T + S+L E + + LD D DV+V++ K + LP+ ++ +Y I A
Sbjct: 49 TQSSSNLAE-LRQLLDCDTPSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLA 107
Query: 222 DKIEDPATRMATIKKLVHE--LPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGP 279
+++ + +KKL+ +P ++ TL+Y+L+H ++ S N + AR L+ +F P
Sbjct: 108 PEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSP 167
Query: 280 TLVR---AGDDNMVTMV 293
L R A DN ++
Sbjct: 168 MLFRFSAASSDNTENLI 184
>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain
Length = 228
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%)
Query: 194 ISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYIL 253
++ +LK +FR LP+ L+T +L F+Q + R+ IK + LP+ + + L+ +L
Sbjct: 91 VADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAIMLLPDENREVLQTLL 150
Query: 254 QHLKRVVDNSEVNKMEARNLAIMFGPTL 281
L V + N+M NLA+ P+L
Sbjct: 151 YFLSDVTAAVKENQMTPTNLAVCLAPSL 178
>pdb|1DRO|A Chain A, Nmr Structure Of The CytoskeletonSIGNAL TRANSDUCTION
Protein
Length = 122
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 8 IDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA 60
D+ + +E+A DYTK+KHVLR+ ++ LLQA D M+ W+ L+ +
Sbjct: 67 YDLQNAAIEIASDYTKKKHVLRV-KLANGALFLLQAHDDTEMSQWVTSLKAQS 118
>pdb|2QV2|A Chain A, A Role Of The Lowe Syndrome Protein Ocrl In Early Steps Of
The Endocytic Pathway
Length = 342
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Query: 162 NTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQA 221
T + + + LD S+ E P S+ +V +LL F LP+ ++ ELY +
Sbjct: 198 QTPGMQEELQQIIDCLDTSIPETIP-GSNHSVAEALL-IFLEALPEPVICYELYQRCL-- 253
Query: 222 DKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTL 281
D DP ++++ +LP H +Y++ L+ ++ SE N + A +A +F L
Sbjct: 254 DSAYDPRI----CRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLL 309
Query: 282 VR 283
+R
Sbjct: 310 LR 311
>pdb|3QIS|A Chain A, Recognition Of The F&h Motif By The Lowe Syndrome Protein
Ocrl
Length = 366
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Query: 162 NTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQA 221
T + + + LD S+ E P S+ +V +LL F LP+ ++ ELY +
Sbjct: 222 QTPGMQEELQQIIDCLDTSIPETIP-GSNHSVAEALL-IFLEALPEPVICYELYQRCL-- 277
Query: 222 DKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTL 281
D DP ++++ +LP H +Y++ L+ ++ SE N + A +A +F L
Sbjct: 278 DSAYDPRI----CRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLL 333
Query: 282 VR 283
+R
Sbjct: 334 LR 335
>pdb|1WJM|A Chain A, Solution Structure Of Pleckstrin Homology Domain Of Human
Beta Iii Spectrin
Length = 123
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 17 VACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIR 54
VA DY KRKHV +L E L QA D M+ W+R
Sbjct: 74 VAFDYRKRKHVFKL-GLQDGKEYLFQAKDEAEMSSWLR 110
>pdb|1BTN|A Chain A, Structure Of The Binding Site For Inositol Phosphates In A
Ph Domain
pdb|1MPH|A Chain A, Pleckstrin Homology Domain From Mouse Beta-Spectrin, Nmr,
50 Structures
Length = 106
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 16 EVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT 58
EVA DY K+KHV +L N E L QA D M WI+ + +
Sbjct: 64 EVALDYKKKKHVFKLRLSDGN-EYLFQAKDDEEMNTWIQAISS 105
>pdb|2DHJ|A Chain A, Solution Structure Of The Ph Domain Of Rho Gtpase
Activating Protein 21 From Human
Length = 125
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 15 VEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASESNISPAS 74
++++ TKRK+V RL++ S+ E L QA+D M WI+ + Q +S N P+S
Sbjct: 73 IDISYSETKRKNVFRLTT--SDCECLFQAEDRDDMLAWIKTI------QESSNLNSGPSS 124
Query: 75 G 75
G
Sbjct: 125 G 125
>pdb|2J59|M Chain M, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|N Chain N, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|O Chain O, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|P Chain P, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|Q Chain Q, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|R Chain R, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 168
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 8 IDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQ 57
I + ++++ TKRK+V RL++ S+ E L QA+D M WI+ +Q
Sbjct: 60 ISVNACLIDISYSETKRKNVFRLTT--SDCECLFQAEDRDDMLAWIKTIQ 107
>pdb|2XS6|A Chain A, Crystal Structure Of The Rhogap Domain Of Human Pik3r2
Length = 214
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 12/96 (12%)
Query: 187 RWSDVNVISSLLKSFFRRLPDSLLTTELYPH----FIQADKIEDPATRMATIKKLVHELP 242
+W D ++ +KSF LP L+T E +A PA T LP
Sbjct: 80 QW-DTAALADGIKSFLLALPAPLVTPEASAEARRALREAAGPVGPALEPPT-------LP 131
Query: 243 EHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFG 278
H TL+++LQHL RV + R L FG
Sbjct: 132 LHRALTLRFLLQHLGRVARRAPALGPAVRALGATFG 167
>pdb|4H8S|A Chain A, Crystal Structure Of Human Appl2barph Domain
pdb|4H8S|B Chain B, Crystal Structure Of Human Appl2barph Domain
pdb|4H8S|C Chain C, Crystal Structure Of Human Appl2barph Domain
pdb|4H8S|D Chain D, Crystal Structure Of Human Appl2barph Domain
Length = 407
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 13 NCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWI 53
NC +A D R++ ++++P+ + ++LQA+ WI
Sbjct: 350 NCSVMAVDCEDRRYCFQITTPNGKSGIILQAESRKENEEWI 390
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.129 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,453,589
Number of Sequences: 62578
Number of extensions: 250908
Number of successful extensions: 671
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 635
Number of HSP's gapped (non-prelim): 33
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)