Query psy5716
Match_columns 294
No_of_seqs 323 out of 1554
Neff 8.1
Searched_HMMs 46136
Date Sat Aug 17 00:48:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5716.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5716hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4407|consensus 100.0 7.1E-48 1.5E-52 380.6 11.7 290 4-294 986-1334(1973)
2 cd04407 RhoGAP_myosin_IXB RhoG 100.0 2.7E-38 5.8E-43 268.6 14.8 145 138-286 15-162 (186)
3 cd04372 RhoGAP_chimaerin RhoGA 100.0 1.9E-38 4.2E-43 271.6 14.0 153 137-290 15-170 (194)
4 cd04403 RhoGAP_ARHGAP27_15_12_ 100.0 1.8E-38 4E-43 270.2 13.8 150 138-289 16-168 (187)
5 cd04395 RhoGAP_ARHGAP21 RhoGAP 100.0 2.2E-38 4.8E-43 271.7 14.2 155 137-292 1-174 (196)
6 cd04406 RhoGAP_myosin_IXA RhoG 100.0 3.7E-38 7.9E-43 267.8 14.6 145 138-286 15-162 (186)
7 cd04384 RhoGAP_CdGAP RhoGAP_Cd 100.0 3.7E-38 8E-43 269.7 14.3 132 155-287 37-168 (195)
8 cd04383 RhoGAP_srGAP RhoGAP_sr 100.0 3E-38 6.5E-43 268.9 13.4 148 138-287 18-168 (188)
9 cd04373 RhoGAP_p190 RhoGAP_p19 100.0 4.8E-38 1E-42 267.0 14.0 151 139-292 16-169 (185)
10 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 100.0 1.1E-37 2.4E-42 266.7 14.4 152 136-289 14-168 (196)
11 cd04390 RhoGAP_ARHGAP22_24_25 100.0 1E-37 2.2E-42 268.3 13.6 134 155-292 42-177 (199)
12 cd04375 RhoGAP_DLC1 RhoGAP_DLC 100.0 2.3E-37 5E-42 269.3 14.4 151 135-289 2-170 (220)
13 cd04408 RhoGAP_GMIP RhoGAP_GMI 100.0 2.4E-37 5.1E-42 265.8 13.7 149 136-288 14-177 (200)
14 cd04379 RhoGAP_SYD1 RhoGAP_SYD 100.0 1.2E-36 2.5E-41 262.2 13.8 151 137-288 17-173 (207)
15 cd04378 RhoGAP_GMIP_PARG1 RhoG 100.0 8.8E-37 1.9E-41 263.1 13.0 149 137-289 15-180 (203)
16 cd04386 RhoGAP_nadrin RhoGAP_n 100.0 2.1E-36 4.6E-41 260.8 14.3 152 135-288 2-171 (203)
17 cd04394 RhoGAP-ARHGAP11A RhoGA 100.0 2.1E-36 4.5E-41 260.3 14.0 127 155-287 39-165 (202)
18 cd04391 RhoGAP_ARHGAP18 RhoGAP 100.0 2.5E-36 5.4E-41 262.7 14.5 131 155-288 42-173 (216)
19 cd04381 RhoGap_RalBP1 RhoGap_R 100.0 2.2E-36 4.9E-41 256.3 13.6 146 135-285 17-165 (182)
20 cd04396 RhoGAP_fSAC7_BAG7 RhoG 100.0 2.1E-36 4.7E-41 264.3 13.6 155 134-289 28-202 (225)
21 cd04392 RhoGAP_ARHGAP19 RhoGAP 100.0 2.8E-36 6E-41 260.4 13.9 145 142-290 13-172 (208)
22 cd04377 RhoGAP_myosin_IX RhoGA 100.0 3.6E-36 7.7E-41 256.0 14.3 147 137-287 14-163 (186)
23 cd04409 RhoGAP_PARG1 RhoGAP_PA 100.0 2.5E-36 5.4E-41 261.4 13.4 148 138-289 16-188 (211)
24 cd04388 RhoGAP_p85 RhoGAP_p85: 100.0 2.8E-36 6E-41 257.0 13.2 149 136-289 13-167 (200)
25 cd04397 RhoGAP_fLRG1 RhoGAP_fL 100.0 3.4E-36 7.4E-41 261.2 13.9 150 136-288 25-182 (213)
26 cd04402 RhoGAP_ARHGAP20 RhoGAP 100.0 5.6E-36 1.2E-40 256.0 14.3 129 155-288 35-163 (192)
27 cd04382 RhoGAP_MgcRacGAP RhoGA 100.0 4.8E-36 1E-40 256.0 13.5 151 134-289 13-166 (193)
28 cd04374 RhoGAP_Graf RhoGAP_Gra 100.0 4.7E-36 1E-40 257.7 12.4 148 142-290 32-185 (203)
29 cd04400 RhoGAP_fBEM3 RhoGAP_fB 100.0 1.1E-35 2.4E-40 253.9 13.3 148 138-286 22-174 (190)
30 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 100.0 2.5E-35 5.5E-40 254.0 13.9 150 134-288 5-168 (206)
31 cd04398 RhoGAP_fRGD1 RhoGAP_fR 100.0 2.8E-35 6E-40 251.9 13.4 154 136-290 14-172 (192)
32 cd04393 RhoGAP_FAM13A1a RhoGAP 100.0 4.4E-35 9.4E-40 249.9 13.8 142 142-287 24-169 (189)
33 cd04399 RhoGAP_fRGD2 RhoGAP_fR 100.0 5.1E-35 1.1E-39 253.2 13.0 156 135-290 13-186 (212)
34 cd04389 RhoGAP_KIAA1688 RhoGAP 100.0 6.3E-35 1.4E-39 248.2 12.3 127 155-292 42-170 (187)
35 cd04404 RhoGAP-p50rhoGAP RhoGA 100.0 1.5E-34 3.3E-39 247.8 14.1 151 134-289 2-172 (195)
36 cd04385 RhoGAP_ARAP RhoGAP_ARA 100.0 1.5E-34 3.1E-39 245.6 13.7 151 135-287 12-165 (184)
37 KOG1450|consensus 100.0 3.5E-34 7.6E-39 274.5 17.7 276 6-287 310-622 (650)
38 smart00324 RhoGAP GTPase-activ 100.0 5E-31 1.1E-35 221.9 13.5 148 139-289 4-154 (174)
39 KOG2200|consensus 100.0 2E-30 4.4E-35 242.8 13.5 154 129-285 292-464 (674)
40 KOG4269|consensus 100.0 2E-30 4.3E-35 251.3 11.6 158 131-289 893-1073(1112)
41 cd04380 RhoGAP_OCRL1 RhoGAP_OC 100.0 2.1E-30 4.5E-35 226.0 10.4 141 138-289 50-198 (220)
42 cd00159 RhoGAP RhoGAP: GTPase- 100.0 8.1E-30 1.8E-34 212.9 13.2 144 141-288 3-149 (169)
43 PF00620 RhoGAP: RhoGAP domain 100.0 3E-30 6.6E-35 212.0 8.1 144 141-287 3-149 (151)
44 KOG1451|consensus 100.0 2E-29 4.2E-34 235.6 12.2 229 6-293 314-547 (812)
45 KOG4270|consensus 100.0 9.9E-29 2.2E-33 236.4 10.4 129 155-288 187-315 (577)
46 KOG1117|consensus 99.9 3.7E-26 8E-31 221.0 14.7 197 24-285 676-875 (1186)
47 KOG2710|consensus 99.9 5.3E-26 1.1E-30 210.0 10.1 145 140-284 96-254 (412)
48 KOG4406|consensus 99.9 1.8E-25 3.9E-30 202.9 9.4 154 131-289 247-422 (467)
49 KOG3564|consensus 99.9 4E-25 8.8E-30 202.8 10.5 145 137-286 361-508 (604)
50 KOG1453|consensus 99.9 5E-24 1.1E-28 218.0 9.6 147 137-287 602-772 (918)
51 KOG4724|consensus 99.8 5.7E-19 1.2E-23 168.1 8.2 151 131-287 76-242 (741)
52 KOG1452|consensus 99.8 4.2E-19 9E-24 156.3 6.6 152 134-286 181-353 (442)
53 KOG4271|consensus 99.8 4.7E-19 1E-23 173.6 6.1 146 134-282 914-1076(1100)
54 cd04401 RhoGAP_fMSB1 RhoGAP_fM 99.7 1.7E-16 3.7E-21 134.7 9.1 141 144-287 12-167 (198)
55 cd04405 RhoGAP_BRCC3-like RhoG 99.7 5.5E-16 1.2E-20 133.0 10.8 129 155-286 61-207 (235)
56 PF15410 PH_9: Pleckstrin homo 99.6 2.3E-16 4.9E-21 124.6 6.6 54 6-60 65-118 (119)
57 cd01230 PH_EFA6 EFA6 Pleckstri 99.5 1.5E-14 3.2E-19 113.3 7.2 61 4-65 56-116 (117)
58 KOG4370|consensus 99.3 5.1E-12 1.1E-16 115.5 5.8 94 189-282 161-254 (514)
59 KOG0932|consensus 99.2 9.4E-12 2E-16 117.3 5.6 75 6-84 564-638 (774)
60 KOG3565|consensus 99.2 1.2E-11 2.6E-16 121.8 5.6 150 133-286 213-367 (640)
61 cd01253 PH_beta_spectrin Beta- 99.1 1E-10 2.3E-15 89.9 6.4 53 5-58 51-103 (104)
62 cd01260 PH_CNK Connector enhan 98.1 4.2E-06 9.1E-11 63.2 5.3 51 6-58 45-95 (96)
63 cd01250 PH_centaurin Centaurin 98.0 8.8E-06 1.9E-10 60.6 5.4 51 6-58 43-93 (94)
64 KOG4724|consensus 98.0 3.1E-06 6.7E-11 82.1 3.5 147 135-285 414-589 (741)
65 PF00169 PH: PH domain; Inter 98.0 2.9E-05 6.2E-10 58.1 7.0 55 5-60 44-103 (104)
66 cd01265 PH_PARIS-1 PARIS-1 ple 97.9 2.3E-05 5.1E-10 59.2 6.1 51 5-59 43-93 (95)
67 cd01233 Unc104 Unc-104 pleckst 97.9 2.8E-05 6.1E-10 59.3 5.7 53 6-60 43-98 (100)
68 PF08101 DUF1708: Domain of un 97.9 6.5E-05 1.4E-09 71.1 9.0 99 188-288 70-170 (420)
69 cd01257 PH_IRS Insulin recepto 97.9 3.4E-05 7.5E-10 58.9 5.9 51 6-58 50-100 (101)
70 cd01264 PH_melted Melted pleck 97.8 3.8E-05 8.3E-10 58.5 5.8 52 6-59 45-100 (101)
71 KOG0517|consensus 97.8 2.2E-06 4.8E-11 90.5 -1.8 59 2-61 2352-2410(2473)
72 cd01246 PH_oxysterol_bp Oxyste 97.7 7.1E-05 1.5E-09 55.3 5.6 49 6-58 42-90 (91)
73 cd01247 PH_GPBP Goodpasture an 97.7 9.6E-05 2.1E-09 55.4 5.9 50 5-58 41-90 (91)
74 cd01252 PH_cytohesin Cytohesin 97.7 0.00014 3E-09 57.7 6.6 53 6-60 41-113 (125)
75 cd01238 PH_Tec Tec pleckstrin 97.7 0.0001 2.2E-09 56.8 5.6 52 6-59 48-106 (106)
76 cd01231 PH_Lnk LNK-family Plec 97.6 0.0001 2.2E-09 55.2 5.0 40 18-58 67-106 (107)
77 cd00821 PH Pleckstrin homology 97.5 0.00035 7.6E-09 50.7 6.5 54 4-58 42-95 (96)
78 cd01244 PH_RasGAP_CG9209 RAS_G 97.5 0.00023 5.1E-09 54.0 5.6 51 6-58 45-97 (98)
79 cd01251 PH_centaurin_alpha Cen 97.5 0.00027 5.8E-09 54.2 6.0 35 25-61 67-101 (103)
80 cd01220 PH_CDEP Chondrocyte-de 97.5 0.00041 8.9E-09 52.8 6.5 53 6-60 45-97 (99)
81 cd01236 PH_outspread Outspread 97.4 0.00049 1.1E-08 52.8 5.8 51 6-58 51-102 (104)
82 smart00233 PH Pleckstrin homol 97.3 0.0009 1.9E-08 49.0 7.0 55 5-60 45-101 (102)
83 cd01266 PH_Gab Gab (Grb2-assoc 97.3 0.00054 1.2E-08 52.9 5.9 53 5-59 50-107 (108)
84 cd01219 PH_FGD FGD (faciogenit 97.3 0.0007 1.5E-08 51.6 6.2 51 7-60 49-99 (101)
85 cd01245 PH_RasGAP_CG5898 RAS G 97.2 0.00073 1.6E-08 51.3 5.6 50 7-58 46-97 (98)
86 cd01237 Unc112 Unc-112 pleckst 97.2 0.0011 2.5E-08 50.6 6.1 58 3-60 42-103 (106)
87 KOG1453|consensus 97.2 0.0003 6.6E-09 73.3 4.0 132 155-286 501-669 (918)
88 cd01235 PH_SETbf Set binding f 97.0 0.0018 3.8E-08 49.0 5.8 52 6-59 42-100 (101)
89 cd00900 PH-like Pleckstrin hom 96.9 0.0025 5.5E-08 46.4 5.9 51 7-58 46-98 (99)
90 cd01218 PH_phafin2 Phafin2 Pl 96.9 0.0033 7.2E-08 48.2 6.6 53 7-61 47-99 (104)
91 cd01263 PH_anillin Anillin Ple 96.8 0.0015 3.3E-08 51.5 3.9 53 6-58 47-121 (122)
92 cd01249 PH_oligophrenin Oligop 96.7 0.003 6.4E-08 48.2 4.5 53 4-57 50-102 (104)
93 cd01261 PH_SOS Son of Sevenles 96.5 0.0081 1.7E-07 46.7 6.2 52 8-60 58-109 (112)
94 cd01241 PH_Akt Akt pleckstrin 96.4 0.0076 1.7E-07 46.0 5.5 52 7-59 44-101 (102)
95 PTZ00283 serine/threonine prot 96.2 0.0057 1.2E-07 59.8 4.9 46 14-60 442-489 (496)
96 cd01226 PH_exo84 Exocyst compl 95.3 0.044 9.6E-07 41.6 5.3 52 7-60 47-98 (100)
97 cd01221 PH_ephexin Ephexin Ple 94.9 0.054 1.2E-06 42.8 4.9 35 23-57 81-119 (125)
98 PF15409 PH_8: Pleckstrin homo 94.8 0.095 2.1E-06 38.9 5.7 47 7-59 42-88 (89)
99 KOG0521|consensus 94.3 0.065 1.4E-06 55.1 5.2 55 6-62 316-370 (785)
100 PTZ00267 NIMA-related protein 94.2 0.075 1.6E-06 51.6 5.3 39 21-60 438-476 (478)
101 cd01254 PH_PLD Phospholipase D 94.2 0.089 1.9E-06 41.4 4.8 35 22-58 86-120 (121)
102 cd01224 PH_Collybistin Collybi 93.9 0.2 4.3E-06 38.6 6.0 52 7-58 48-105 (109)
103 KOG1449|consensus 92.6 0.014 3E-07 56.6 -2.6 84 189-286 272-355 (670)
104 KOG3523|consensus 92.1 0.15 3.3E-06 49.9 3.7 40 19-58 549-592 (695)
105 PF15413 PH_11: Pleckstrin hom 91.8 0.33 7.2E-06 37.6 4.7 33 25-59 80-112 (112)
106 cd01225 PH_Cool_Pix Cool (clon 91.4 0.52 1.1E-05 36.3 5.2 52 7-59 57-108 (111)
107 cd01258 PH_syntrophin Syntroph 90.2 0.64 1.4E-05 35.8 4.8 36 22-58 71-107 (108)
108 KOG4370|consensus 90.0 1.5 3.2E-05 41.5 7.8 83 155-244 91-180 (514)
109 cd01222 PH_clg Clg (common-sit 90.0 0.83 1.8E-05 34.5 5.2 36 25-60 59-95 (97)
110 cd01223 PH_Vav Vav pleckstrin 89.4 0.88 1.9E-05 35.5 5.0 37 23-60 74-111 (116)
111 cd01232 PH_TRIO Trio pleckstri 88.6 1.4 3E-05 34.4 5.7 39 22-60 73-112 (114)
112 cd01240 PH_beta-ARK Beta adren 87.8 1.3 2.9E-05 33.9 4.9 43 17-60 54-98 (116)
113 KOG4271|consensus 85.7 0.82 1.8E-05 47.1 3.7 95 189-283 427-536 (1100)
114 cd01243 PH_MRCK MRCK (myotonic 84.8 3.1 6.8E-05 32.6 5.7 53 7-59 52-118 (122)
115 cd01242 PH_ROK Rok (Rho- assoc 83.9 3.1 6.8E-05 32.1 5.3 40 20-59 70-109 (112)
116 KOG0930|consensus 82.7 3.1 6.6E-05 37.4 5.5 42 20-61 315-376 (395)
117 KOG0690|consensus 81.3 2.8 6E-05 38.9 4.9 42 21-63 75-119 (516)
118 cd01228 PH_BCR-related BCR (br 80.7 2 4.4E-05 32.1 3.2 31 28-59 63-93 (96)
119 PF15406 PH_6: Pleckstrin homo 79.4 2.8 6.1E-05 32.2 3.6 31 25-57 80-110 (112)
120 cd01227 PH_Dbs Dbs (DBL's big 78.7 5.5 0.00012 31.9 5.3 36 28-63 83-118 (133)
121 KOG4424|consensus 78.3 4.1 8.9E-05 40.1 5.2 55 5-62 317-371 (623)
122 KOG2059|consensus 72.8 5.5 0.00012 40.1 4.6 38 22-61 628-665 (800)
123 cd01256 PH_dynamin Dynamin ple 65.5 20 0.00044 27.2 5.3 51 8-59 46-104 (110)
124 PF14593 PH_3: PH domain; PDB: 64.4 21 0.00046 27.3 5.4 35 24-61 66-100 (104)
125 cd01234 PH_CADPS CADPS (Ca2+-d 59.2 17 0.00036 27.9 3.9 54 5-60 47-110 (117)
126 PF15405 PH_5: Pleckstrin homo 57.3 17 0.00036 29.1 4.0 37 23-59 95-134 (135)
127 KOG3723|consensus 57.0 5.9 0.00013 39.1 1.5 55 6-62 780-838 (851)
128 cd01262 PH_PDK1 3-Phosphoinosi 52.6 24 0.00052 26.1 3.8 32 25-59 56-87 (89)
129 PF03471 CorC_HlyC: Transporte 48.8 15 0.00033 26.2 2.3 44 154-207 5-48 (81)
130 KOG1264|consensus 46.5 40 0.00086 35.1 5.3 55 9-63 857-913 (1267)
131 cd08048 TAF11 TATA Binding Pro 46.0 51 0.0011 24.2 4.6 55 156-218 11-81 (85)
132 PRK14101 bifunctional glucokin 43.7 43 0.00093 33.9 5.3 71 198-274 302-381 (638)
133 PF12480 DUF3699: Protein of u 41.0 62 0.0013 23.2 4.4 37 20-57 21-62 (77)
134 KOG3640|consensus 37.9 45 0.00097 35.1 4.3 56 5-60 1035-1106(1116)
135 PF01418 HTH_6: Helix-turn-hel 36.6 45 0.00097 23.6 3.1 39 231-275 4-42 (77)
136 cd01259 PH_Apbb1ip Apbb1ip (Am 33.8 1E+02 0.0022 24.0 4.7 51 9-59 47-107 (114)
137 PF06297 PET: PET Domain; Int 33.5 78 0.0017 24.3 4.1 53 182-246 17-69 (106)
138 KOG3549|consensus 33.4 50 0.0011 30.8 3.5 42 21-63 221-263 (505)
139 COG4835 Uncharacterized protei 33.0 39 0.00084 26.0 2.3 45 155-205 62-106 (124)
140 PLN02866 phospholipase D 32.7 1E+02 0.0022 33.2 6.0 45 15-61 261-308 (1068)
141 COG2747 FlgM Negative regulato 32.4 96 0.0021 23.2 4.3 34 162-204 59-92 (93)
142 PF15404 PH_4: Pleckstrin homo 30.9 53 0.0011 27.8 3.1 40 19-58 142-183 (185)
143 PF03540 TFIID_30kDa: Transcri 29.4 81 0.0018 20.8 3.1 31 208-238 1-31 (51)
144 PF02520 DUF148: Domain of unk 29.2 2E+02 0.0044 21.7 6.0 44 213-257 65-110 (113)
145 KOG3551|consensus 27.8 93 0.002 29.5 4.3 43 20-62 230-273 (506)
146 KOG0705|consensus 27.4 49 0.0011 33.0 2.5 33 27-60 447-479 (749)
147 PF08458 PH_2: Plant pleckstri 27.4 1.6E+02 0.0034 22.8 4.8 36 24-61 69-104 (110)
148 cd01239 PH_PKD Protein kinase 27.3 1.2E+02 0.0025 23.7 4.1 34 23-58 63-116 (117)
149 KOG3520|consensus 25.7 2E+02 0.0043 31.3 6.7 41 24-64 684-725 (1167)
150 KOG0268|consensus 25.5 29 0.00064 32.5 0.6 37 21-58 311-348 (433)
151 PF04282 DUF438: Family of unk 24.0 2.7E+02 0.0058 19.7 5.6 53 197-249 1-54 (71)
152 PF04316 FlgM: Anti-sigma-28 f 23.4 1.8E+02 0.0039 19.2 4.1 30 162-200 26-55 (57)
153 PRK11302 DNA-binding transcrip 22.9 1.1E+02 0.0024 27.1 3.9 31 231-261 4-34 (284)
154 KOG3549|consensus 21.3 1.5E+02 0.0033 27.8 4.3 39 21-60 348-386 (505)
155 TIGR03824 FlgM_jcvi flagellar 20.7 1.7E+02 0.0037 21.6 3.9 31 162-201 64-94 (95)
156 PF13619 KTSC: KTSC domain 20.7 1.7E+02 0.0037 19.5 3.6 36 19-55 9-44 (60)
157 PF02084 Bindin: Bindin; Inte 20.2 2.5E+02 0.0054 24.6 5.1 58 162-225 102-163 (238)
158 PRK11337 DNA-binding transcrip 20.1 1.6E+02 0.0034 26.3 4.3 42 227-274 12-53 (292)
159 PF12814 Mcp5_PH: Meiotic cell 20.0 2.6E+02 0.0057 21.6 5.1 34 25-60 88-121 (123)
No 1
>KOG4407|consensus
Probab=100.00 E-value=7.1e-48 Score=380.64 Aligned_cols=290 Identities=38% Similarity=0.600 Sum_probs=226.2
Q ss_pred CCcccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhhcc----------CCcC-CCCC
Q psy5716 4 SCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQS----------ASES-NISP 72 (294)
Q Consensus 4 ~~~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~~~----------~~~~-~~sP 72 (294)
.+.++.+.+|..++-+..+||+|||||.+. +-.|+|||++|.++|..|++.+++...... +..+ ..+|
T Consensus 986 ~tts~c~nscltdI~ysetkrn~vfRLTt~-d~ce~lfqaeDrddmlgG~~ttq~St~~na~~~~V~~r~~a~~s~~~s~ 1064 (1973)
T KOG4407|consen 986 ATTSECLNSCLTDIQYSETKRNQVFRLTTN-DLCEGLFQAEDRDDMLGGLSTTQSSTTENAKNRLVMHRYIAKNSQLQSP 1064 (1973)
T ss_pred ccCccccccchhhhhhhhhhhhhHHHhHHH-HHHhHhhccCccccccchhhhhhhcccccccccccccchhhhcccccCc
Confidence 357899999999999999999999999998 889999999999999999999987654321 0000 0122
Q ss_pred CCcccccc------------------cccC---CCCCC-CCCCC--CCCCCCCCCCh-hhhhhHHHHHHHhhcCCCCCCC
Q psy5716 73 ASGQKNRK------------------FASA---STSPR-KSSAT--EATLPPSPKSK-TWKGRVAKQFRRIQAGAGSPNS 127 (294)
Q Consensus 73 ~~~~~~kk------------------~~~~---~~k~r-k~s~~--~~~~~~spk~~-~~~~~~~~~~~~~~~~~~~~~~ 127 (294)
...++-.- ++.. ..+++ ...+. ..++...||++ +||+.+......-.++.++...
T Consensus 1065 ~~~~kae~~pst~~ssl~~~at~~~a~s~~~sq~~~p~~~se~k~~p~~d~~~PKsk~~Wkk~~~~~~gsg~g~~~~~~g 1144 (1973)
T KOG4407|consen 1065 TANKKAETDPSTVPSSLQTMATTSSAFSHHSSQAMGPSRDSENKEAPTADATTPKSKRKWKKSKAAKQGSGGGSSGSSSG 1144 (1973)
T ss_pred cccchhhcCCCCCcchhHHHHHHhhhccCccccccCcccccccccCCcccCCCCccccchhhhhhhhccCCCCCCCCccc
Confidence 21111100 0000 11122 22222 34456789987 8987553322222221111111
Q ss_pred --C-CCCCCCCCccccccccccccc--cccCC-----------------ceeecCCCHHHHHHHHHHHhcC-CCcCccCC
Q psy5716 128 --P-HPPYPPGSNIGVPLQHCVSVN--LLCPF-----------------LFPRVPGNTAAVSSLTEAVNKG-LDASVLEQ 184 (294)
Q Consensus 128 --~-~~~~~~~~~fgv~L~~~~~~~--~~~p~-----------------GIfR~~g~~~~i~~l~~~~~~~-~~~~~~~~ 184 (294)
+ .....+-.+|||+|..|...- .+||+ ||||||||.+.|..|++.+|++ +-.+++..
T Consensus 1145 ~~~~~~a~~~~~~~GVrl~dCP~~~~n~yVP~iV~~C~~vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~ 1224 (1973)
T KOG4407|consen 1145 SQQQGAAGAPQPVLGVRLADCPTGSCNDYVPMIVQACVCVVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESL 1224 (1973)
T ss_pred ccccccccCcCcccccccccCCcccccccchHHHHHHHHHHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhcc
Confidence 0 112345579999999997654 56776 9999999999999999999885 44457778
Q ss_pred CCCCcchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccc
Q psy5716 185 DPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSE 264 (294)
Q Consensus 185 ~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~ 264 (294)
|.+|.||++|.+|||.|||.|||||+|.++|..||++.+..+.-+|+..|++||+.||.+||+||++|+.||.+|+.|++
T Consensus 1225 DdrWrDvNVVSSLLK~F~RkLPepL~t~~~Y~~FIeAnrk~~~l~Rl~~Lr~l~~~LPrhhYeTlkfLi~HL~~Vt~nsd 1304 (1973)
T KOG4407|consen 1225 DDRWRDVNVVSSLLKMFLRKLPEPLLTDKLYPFFIEANRKSTHLNRLHKLRNLLRKLPRHHYETLKFLIVHLSEVTKNSD 1304 (1973)
T ss_pred ccchhhhHHHHHHHHHHHHhCCcccccccchhhhhhhcccccHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccchhHhhcccccccCCCCcccccC
Q psy5716 265 VNKMEARNLAIMFGPTLVRAGDDNMVTMVS 294 (294)
Q Consensus 265 ~NkM~~~nLAivf~P~L~~~~~~~~~~m~t 294 (294)
+|||.++||||+|||+|+|+++|||.+|||
T Consensus 1305 vNkMEprNLAi~FGPsiVRts~Dnm~tmVt 1334 (1973)
T KOG4407|consen 1305 VNKMEPRNLAIMFGPSIVRTSDDNMATMVT 1334 (1973)
T ss_pred cccccccceeEEeccceeccCCccHHHHhh
Confidence 999999999999999999999999999997
No 2
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=2.7e-38 Score=268.62 Aligned_cols=145 Identities=25% Similarity=0.445 Sum_probs=127.4
Q ss_pred cccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcch
Q psy5716 138 IGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTEL 214 (294)
Q Consensus 138 fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~ 214 (294)
.+..|+.|+.+++..+. ||||++|+..++++|++.+|.|... ++.. .+|+|+||++||.|||+||+||||++.
T Consensus 15 vP~il~~~i~~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~-~~~~---~~d~h~va~lLK~flReLPepLi~~~~ 90 (186)
T cd04407 15 VPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQADPEN-VKLE---NYPIHAITGLLKQWLRELPEPLMTFAQ 90 (186)
T ss_pred CCcHHHHHHHHHHHcCCCCCceeecCCCHHHHHHHHHHHhcCCcc-cCcc---cCCHHHHHHHHHHHHHhCCCccCCHHH
Confidence 33344555555533332 9999999999999999999987543 3333 379999999999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCC
Q psy5716 215 YPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD 286 (294)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~ 286 (294)
|++|+.+.+..+..+++..++.++.+||+.|+.+|+||+.||++|+++++.|+|+++|||+||||+|+|+++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~ 162 (186)
T cd04407 91 YNDFLRAVELPEKQEQLQAIYRVLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCLLRCPD 162 (186)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhccccCCCC
Confidence 999999998888889999999999999999999999999999999999999999999999999999999754
No 3
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=100.00 E-value=1.9e-38 Score=271.61 Aligned_cols=153 Identities=33% Similarity=0.571 Sum_probs=133.1
Q ss_pred ccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcc
Q psy5716 137 NIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTE 213 (294)
Q Consensus 137 ~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~ 213 (294)
..+..++.|+.+++..+. ||||++|+..+|+++++.+|++... .+.....+.|+|+||++||.|||+||+||||.+
T Consensus 15 ~iP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~-~~~~~~~~~d~h~va~lLK~flReLP~pLi~~~ 93 (194)
T cd04372 15 QRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEK-ADISATVYPDINVITGALKLYFRDLPIPVITYD 93 (194)
T ss_pred CCChHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHcCCCCc-cCCcccccccHHHHHHHHHHHHHhCCCccCCHH
Confidence 344446677776654444 9999999999999999999985432 233333346999999999999999999999999
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCCcc
Q psy5716 214 LYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMV 290 (294)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~~~ 290 (294)
.|+.|+++.+..+.++++..++.++.+||+.|+.+|+||+.||++|+++++.|||++.|||+||||+|+++++++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaivf~P~Ll~~~~~~~~ 170 (194)
T cd04372 94 TYPKFIDAAKISNPDERLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGPTLMRPPEDSAL 170 (194)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCCccHH
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999876643
No 4
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.8e-38 Score=270.22 Aligned_cols=150 Identities=35% Similarity=0.593 Sum_probs=132.0
Q ss_pred cccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcch
Q psy5716 138 IGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTEL 214 (294)
Q Consensus 138 fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~ 214 (294)
.+..+..|+.+++..+. ||||++|+...+++|+..+|.+... +..+..+.|+|++|++||.|||+||+||||++.
T Consensus 16 iP~~l~~~i~~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~--~~~~~~~~d~h~va~lLK~fLReLPepLi~~~~ 93 (187)
T cd04403 16 VPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKL--DLDDSKWEDIHVITGALKLFFRELPEPLFPYSL 93 (187)
T ss_pred CChHHHHHHHHHHHhCCCcCceeeecCcHHHHHHHHHHhcCCCCC--CccccccccHHHHHHHHHHHHhcCCCCcCCHHH
Confidence 34445555555533333 9999999999999999999997654 333345589999999999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCCc
Q psy5716 215 YPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNM 289 (294)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~~ 289 (294)
|+.|+++.+..+.++++..++.++.+||+.|+.+|+||+.||++|+++++.|+|++.|||+||||+|+|++.++.
T Consensus 94 ~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf~P~ll~~~~~~~ 168 (187)
T cd04403 94 FNDFVAAIKLSDYEQRVSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPTLLRPEQETG 168 (187)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhccccccCCCCcch
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987665
No 5
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.2e-38 Score=271.74 Aligned_cols=155 Identities=59% Similarity=1.002 Sum_probs=140.6
Q ss_pred ccccccccccccc--cccCC-----------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHH
Q psy5716 137 NIGVPLQHCVSVN--LLCPF-----------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSL 197 (294)
Q Consensus 137 ~fgv~L~~~~~~~--~~~p~-----------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~l 197 (294)
.||+||++|.... ..+|. ||||++|+..++++|++.+|+|... ++..++.+.|+|++|++
T Consensus 1 ~FGvpl~~~~~~~~~~~vP~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~-~~~~~~~~~d~~~va~l 79 (196)
T cd04395 1 TFGVPLDDCPPSSENPYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGFD-IDLQDPRWRDVNVVSSL 79 (196)
T ss_pred CCCccHHHHhcccCCCCCChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCCCC-cCccccccccHHHHHHH
Confidence 4788888776654 44565 9999999999999999999998754 55556667899999999
Q ss_pred HHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhh
Q psy5716 198 LKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277 (294)
Q Consensus 198 LK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf 277 (294)
||+|||+||+||||.+.|++|+.+.+.++.++++..++.++.+||+.|+.+|.||+.||++|+.+++.|+|+++|||+||
T Consensus 80 lK~flr~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi~f 159 (196)
T cd04395 80 LKSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVF 159 (196)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccccccchHHhh
Confidence 99999999999999999999999999889899999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCcccc
Q psy5716 278 GPTLVRAGDDNMVTM 292 (294)
Q Consensus 278 ~P~L~~~~~~~~~~m 292 (294)
||+|+|++++++..+
T Consensus 160 aP~l~r~~~~~~~~~ 174 (196)
T cd04395 160 GPTLVRTSDDNMETM 174 (196)
T ss_pred ccccCCCCCCCHHHH
Confidence 999999988877654
No 6
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=100.00 E-value=3.7e-38 Score=267.80 Aligned_cols=145 Identities=26% Similarity=0.466 Sum_probs=127.1
Q ss_pred cccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcch
Q psy5716 138 IGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTEL 214 (294)
Q Consensus 138 fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~ 214 (294)
.+..+..|+.+++..+. ||||++|+..++++|++.+|++... ++++ .+|+|+||++||.|||+||+||||+++
T Consensus 15 iP~ii~~~i~~l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~-~~~~---~~d~h~va~lLK~fLReLPePLi~~~~ 90 (186)
T cd04406 15 VPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDANS-VNLD---DYNIHVIASVFKQWLRDLPNPLMTFEL 90 (186)
T ss_pred CCcHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHccCCCC-CCcc---cCCHHHHHHHHHHHHHhCCCccCCHHH
Confidence 33334455554433332 9999999999999999999987543 3333 379999999999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCC
Q psy5716 215 YPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD 286 (294)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~ 286 (294)
|++|+++.+..+..+++..++.++.+||+.|+.+|+||+.||.+|+.|++.|+|+++|||+||||+|+|+++
T Consensus 91 y~~~~~~~~~~~~~~~i~~~~~li~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P~ll~~p~ 162 (186)
T cd04406 91 YEEFLRAMGLQERRETVRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCILRCPD 162 (186)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcccccCCCC
Confidence 999999998888889999999999999999999999999999999999999999999999999999999865
No 7
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.7e-38 Score=269.68 Aligned_cols=132 Identities=30% Similarity=0.551 Sum_probs=122.1
Q ss_pred ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHH
Q psy5716 155 LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATI 234 (294)
Q Consensus 155 GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l 234 (294)
||||++|+..++++|++.+|+|...++.. +....|+|++|++||.|||+||+||||+++|+.|+++.+..+.+++++.+
T Consensus 37 GIFR~sG~~~~i~~l~~~~d~~~~~~~~~-~~~~~d~h~va~lLK~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l 115 (195)
T cd04384 37 GIYRLSGIASNIQRLRHEFDSEQIPDLTK-DVYIQDIHSVSSLCKLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKI 115 (195)
T ss_pred CeeeCCCCHHHHHHHHHHHcCCCCCCccc-ccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999999987653321 22347999999999999999999999999999999999988899999999
Q ss_pred HHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCC
Q psy5716 235 KKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD 287 (294)
Q Consensus 235 ~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~ 287 (294)
+.++.+||+.||.+|+||+.||++|+++++.|||+++|||+||||+|+++++.
T Consensus 116 ~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~L~~~~~~ 168 (195)
T cd04384 116 HDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVWAPNLLRSKQI 168 (195)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhhHhhhhhcCCCCcc
Confidence 99999999999999999999999999999999999999999999999999753
No 8
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=100.00 E-value=3e-38 Score=268.86 Aligned_cols=148 Identities=28% Similarity=0.528 Sum_probs=129.5
Q ss_pred cccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcch
Q psy5716 138 IGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTEL 214 (294)
Q Consensus 138 fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~ 214 (294)
.+..++.|+.+.+..+. ||||++|+..+++++++.||+|.+. + ..+....|+|+||++||.|||+||+||||.+.
T Consensus 18 IP~~v~~~i~~l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~-~-~~~~~~~d~~~va~lLK~fLReLPepLip~~~ 95 (188)
T cd04383 18 IPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDP-L-ADDQNDHDINSVAGVLKLYFRGLENPLFPKER 95 (188)
T ss_pred CChHHHHHHHHHHHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCc-c-ccccccccHHHHHHHHHHHHHhCCCccCCHHH
Confidence 34444555555533333 9999999999999999999998764 1 12234589999999999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCC
Q psy5716 215 YPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD 287 (294)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~ 287 (294)
|+.|+++.+..+.++++..++.++.+||+.|+.+|+||+.||++|++|++.|||+++|||+||||+|+|.+++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~L~~~p~~ 168 (188)
T cd04383 96 FEDLMSCVKLENPTERVHQIREILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICFGPTLMPVPEG 168 (188)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcccceeeeeccccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998654
No 9
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.8e-38 Score=267.05 Aligned_cols=151 Identities=32% Similarity=0.537 Sum_probs=131.3
Q ss_pred ccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchH
Q psy5716 139 GVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELY 215 (294)
Q Consensus 139 gv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~ 215 (294)
+..|+.|+.+.+..+. ||||++|+..+++++++.+|++...++... .+|+|+||++||+|||+||+||+|+++|
T Consensus 16 P~~l~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~---~~~~~~va~~lK~fLreLPePlip~~~~ 92 (185)
T cd04373 16 PIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSK---DFTVNAVAGALKSFFSELPDPLIPYSMH 92 (185)
T ss_pred CcHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccc---cCcHHHHHHHHHHHHhcCCchhccHHHH
Confidence 3334455554432222 999999999999999999999766434322 2799999999999999999999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCCcccc
Q psy5716 216 PHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTM 292 (294)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~~~~m 292 (294)
+.|+++.+..+.++++..++.++++||+.||.+|+||+.||++|+++++.|+|+++|||+||||+|+|+..+++..+
T Consensus 93 ~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~P~L~~~~~~~~~~~ 169 (185)
T cd04373 93 LELVEAAKINDREQRLHALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPTLMRPDFTSMEAL 169 (185)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHccccCCCCCCCHHHH
Confidence 99999999889999999999999999999999999999999999999999999999999999999999988777543
No 10
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=100.00 E-value=1.1e-37 Score=266.68 Aligned_cols=152 Identities=34% Similarity=0.549 Sum_probs=131.9
Q ss_pred CccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCc
Q psy5716 136 SNIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTT 212 (294)
Q Consensus 136 ~~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~ 212 (294)
...+..+..|+.+++..+. ||||++|+..+++++++.+|++... .. .+....|+|+||++||.|||+||+||||+
T Consensus 14 ~~IP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~-~~-~~~~~~d~h~va~lLK~fLReLPePLip~ 91 (196)
T cd04387 14 SKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKD-VS-VMLSEMDVNAIAGTLKLYFRELPEPLFTD 91 (196)
T ss_pred CCCChHHHHHHHHHHHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcc-cc-cccccCCHHHHHHHHHHHHHhCCCccCCH
Confidence 3444555666666644343 9999999999999999999987543 11 12234899999999999999999999999
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCCc
Q psy5716 213 ELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNM 289 (294)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~~ 289 (294)
++|+.|+++.+..+..+++..++.++.+||++|+.+|.||+.||++|+++++.|||++.|||+||||+|+|++..++
T Consensus 92 ~~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~~~ 168 (196)
T cd04387 92 ELYPNFAEGIALSDPVAKESCMLNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGPTLLRPSEKES 168 (196)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHccccCCCCcccc
Confidence 99999999999899999999999999999999999999999999999999999999999999999999999976544
No 11
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=100.00 E-value=1e-37 Score=268.27 Aligned_cols=134 Identities=32% Similarity=0.549 Sum_probs=121.8
Q ss_pred ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcC--CCHHHHHH
Q psy5716 155 LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKI--EDPATRMA 232 (294)
Q Consensus 155 GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~--~~~~~~~~ 232 (294)
||||++|+...++++++.+|+|....++ ...|+|+||++||.|||+||+||+|.+.|+.|+.+.+. .+.+.++.
T Consensus 42 GIFR~~G~~~~i~~l~~~~d~~~~~~~~----~~~d~h~va~lLK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~ 117 (199)
T cd04390 42 GLFRLPGQANLVKQLQDAFDAGERPSFD----SDTDVHTVASLLKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLG 117 (199)
T ss_pred CeeeCCCCHHHHHHHHHHHhCCCCCCcc----ccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhccCccHHHHHH
Confidence 9999999999999999999998765332 23899999999999999999999999999999988764 45667888
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCCcccc
Q psy5716 233 TIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTM 292 (294)
Q Consensus 233 ~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~~~~m 292 (294)
.++.++..||+.|+.+|.||+.||++|++|++.|||++.|||+||||+|+|+..+++.++
T Consensus 118 ~l~~~l~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~llr~~~~~~~~~ 177 (199)
T cd04390 118 ELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLATVFGPNILRPKVEDPATI 177 (199)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhccccCCCCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999988776544
No 12
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.3e-37 Score=269.30 Aligned_cols=151 Identities=26% Similarity=0.373 Sum_probs=132.5
Q ss_pred CCccccccccccc-cccccCC-----------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHH
Q psy5716 135 GSNIGVPLQHCVS-VNLLCPF-----------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISS 196 (294)
Q Consensus 135 ~~~fgv~L~~~~~-~~~~~p~-----------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~ 196 (294)
+.+||+||+..+. ....+|. ||||++|+..++++|++.+|.+.+. .+.+ ..++|+||+
T Consensus 2 ~~vFGvpL~~~~~r~g~~IP~~i~~~i~~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~-~~~~---~~~~~~va~ 77 (220)
T cd04375 2 KNVFGVPLLVNLQRTGQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESSTDN-VNYD---GQQAYDVAD 77 (220)
T ss_pred CCEecCcHHHHHhhcCCCCChHHHHHHHHHHHhCCCccceeecCCcHHHHHHHHHHHhcCCCc-cCcc---cccHHHHHH
Confidence 4678888874333 3345565 9999999999999999999987554 3332 378999999
Q ss_pred HHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHh
Q psy5716 197 LLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIM 276 (294)
Q Consensus 197 lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAiv 276 (294)
+||+|||+||+||||+++|+.|+++.+..+.++++++++.++..||++||.+|+||+.||++|+.|++.|||++.|||+|
T Consensus 78 lLK~flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAiv 157 (220)
T cd04375 78 MLKQYFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAILLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVC 157 (220)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHH
Confidence 99999999999999999999999998877888999999999999999999999999999999999999999999999999
Q ss_pred hcccccccCCCCc
Q psy5716 277 FGPTLVRAGDDNM 289 (294)
Q Consensus 277 f~P~L~~~~~~~~ 289 (294)
|||+||+....+.
T Consensus 158 faP~L~~~~~~~~ 170 (220)
T cd04375 158 LAPSLFHLNTSRR 170 (220)
T ss_pred HhhhhcCCCCCCc
Confidence 9999999976543
No 13
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.4e-37 Score=265.82 Aligned_cols=149 Identities=31% Similarity=0.449 Sum_probs=128.0
Q ss_pred CccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCc
Q psy5716 136 SNIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTT 212 (294)
Q Consensus 136 ~~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~ 212 (294)
...+..+..|+.+++..+. ||||++|+..++++|++.||+|.+. +++. ..|+|+||++||+|||+||+||||+
T Consensus 14 ~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~-~~~~---~~~~h~va~lLK~fLReLPePLi~~ 89 (200)
T cd04408 14 EEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENGRDL-VDLS---GHSPHDITSVLKHFLKELPEPVLPF 89 (200)
T ss_pred CCCChHHHHHHHHHHHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCc-cCcc---cCCHHHHHHHHHHHHHhCCCccCCH
Confidence 3344555667766654444 9999999999999999999998754 3333 3799999999999999999999999
Q ss_pred chHHHHHHhhcCC------------CHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhccc
Q psy5716 213 ELYPHFIQADKIE------------DPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPT 280 (294)
Q Consensus 213 ~~~~~~~~~~~~~------------~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~ 280 (294)
++|+.|+++.+.. ..++++..++.++..||+.||.||+||+.||++|+++++.|+|++.|||+||||+
T Consensus 90 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivf~P~ 169 (200)
T cd04408 90 QLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELLGRLPVSNYNTLRHLMAHLYRVAERFEDNKMSPNNLGIVFGPT 169 (200)
T ss_pred HHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhccCCCHhHhhhhhccc
Confidence 9999999876421 2457899999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCC
Q psy5716 281 LVRAGDDN 288 (294)
Q Consensus 281 L~~~~~~~ 288 (294)
||+++.+.
T Consensus 170 Ll~~~~~~ 177 (200)
T cd04408 170 LLRPLVGG 177 (200)
T ss_pred cCCCCCCC
Confidence 99997654
No 14
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.2e-36 Score=262.21 Aligned_cols=151 Identities=32% Similarity=0.472 Sum_probs=128.1
Q ss_pred ccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcc
Q psy5716 137 NIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTE 213 (294)
Q Consensus 137 ~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~ 213 (294)
..+..++.|+.+++..+. ||||++|+..++++|++.||++... .+.......|+|+||++||+|||+||+||||++
T Consensus 17 ~IP~iv~~ci~~L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~-~~l~~~~~~dvh~vA~lLK~fLReLPePLip~~ 95 (207)
T cd04379 17 DVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNSAA-VELSEELYPDINVITGVLKDYLRELPEPLITPQ 95 (207)
T ss_pred CcChHHHHHHHHHHHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCc-CCCChhhcccHHHHHHHHHHHHHhCCCccCCHH
Confidence 344446788887755444 9999999999999999999987543 233222335999999999999999999999999
Q ss_pred hHHHHHHhhcCC---CHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCC
Q psy5716 214 LYPHFIQADKIE---DPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDN 288 (294)
Q Consensus 214 ~~~~~~~~~~~~---~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~ 288 (294)
+|+.|+++.+.. +.+.+...++.++.+||+.|+.+|+||+.||++|+++++.|||++.|||+||||+||+++++.
T Consensus 96 ~y~~~~~~~~~~~~~~~~~~~~~~~~li~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLAivf~P~Ll~~~~~~ 173 (207)
T cd04379 96 LYEMVLEALAVALPNDVQTNTHLTLSIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLAVCFGPVLMFCSQEF 173 (207)
T ss_pred HHHHHHHHHhccChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhHHhhccccCCCCccc
Confidence 999999987653 334456778899999999999999999999999999999999999999999999999997655
No 15
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=100.00 E-value=8.8e-37 Score=263.06 Aligned_cols=149 Identities=34% Similarity=0.495 Sum_probs=128.3
Q ss_pred ccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcc
Q psy5716 137 NIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTE 213 (294)
Q Consensus 137 ~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~ 213 (294)
..+..+..|+.+++..+. ||||++|+..++++|++.|++|.+. ++.. .+|+|++|++||+|||+||+||+|++
T Consensus 15 ~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~-~~~~---~~~~h~va~~LK~fLReLpePlip~~ 90 (203)
T cd04378 15 EVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGKDL-VELS---ELSPHDISSVLKLFLRQLPEPLILFR 90 (203)
T ss_pred CCChHHHHHHHHHHhcCCCCccceeCCCcHHHHHHHHHHHhcCCCc-cccc---cCCHHHHHHHHHHHHHhCCCccCCHH
Confidence 345556677777755444 9999999999999999999998654 3333 37999999999999999999999999
Q ss_pred hHHHHHHhhcCC--------------CHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcc
Q psy5716 214 LYPHFIQADKIE--------------DPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGP 279 (294)
Q Consensus 214 ~~~~~~~~~~~~--------------~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P 279 (294)
+|+.|+.+.+.. +...++..++.++..||..|+.+|+||+.||++|+++++.|+|++.|||+||||
T Consensus 91 ~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLaivf~P 170 (203)
T cd04378 91 LYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLLRQLPASNYNTLQHLIAHLYRVAEQFEENKMSPNNLGIVFGP 170 (203)
T ss_pred HHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHhhhhhcc
Confidence 999999876421 234678899999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCc
Q psy5716 280 TLVRAGDDNM 289 (294)
Q Consensus 280 ~L~~~~~~~~ 289 (294)
+|||++.++.
T Consensus 171 ~Ll~~~~~~~ 180 (203)
T cd04378 171 TLIRPRPGDA 180 (203)
T ss_pred ccCCCCCCCc
Confidence 9999987643
No 16
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.1e-36 Score=260.82 Aligned_cols=152 Identities=30% Similarity=0.516 Sum_probs=132.2
Q ss_pred CCccccccccccccc-cccCC-----------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHH
Q psy5716 135 GSNIGVPLQHCVSVN-LLCPF-----------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISS 196 (294)
Q Consensus 135 ~~~fgv~L~~~~~~~-~~~p~-----------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~ 196 (294)
.++||+||+.+.+.. ..+|. ||||++|+...++++++.+|+|... .+. .....|+|++|+
T Consensus 2 ~~~FG~~L~~~~~~~~~~iP~~v~~~i~~L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~-~~~-~~~~~d~h~va~ 79 (203)
T cd04386 2 KPVFGTPLEEHLKRTGREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAGTFS-LPL-DEFYSDPHAVAS 79 (203)
T ss_pred CCcCCCCHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCC-cch-hhccCCHHHHHH
Confidence 456777776554432 34554 9999999999999999999998643 111 122379999999
Q ss_pred HHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHh
Q psy5716 197 LLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIM 276 (294)
Q Consensus 197 lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAiv 276 (294)
+||+|||+||+||+|.++|+.|+.+.+..+.++++..++.++.+||+.|+.+|+||+.||++|++|++.|+|+++|||+|
T Consensus 80 ~lK~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLai~ 159 (203)
T cd04386 80 ALKSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIV 159 (203)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHH
Confidence 99999999999999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred hcccccccCCCC
Q psy5716 277 FGPTLVRAGDDN 288 (294)
Q Consensus 277 f~P~L~~~~~~~ 288 (294)
|||+|+|++.++
T Consensus 160 faP~ll~~~~~~ 171 (203)
T cd04386 160 LAPNLLWAKNEG 171 (203)
T ss_pred hccccCCCCCCC
Confidence 999999997764
No 17
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.1e-36 Score=260.34 Aligned_cols=127 Identities=28% Similarity=0.458 Sum_probs=119.0
Q ss_pred ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHH
Q psy5716 155 LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATI 234 (294)
Q Consensus 155 GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l 234 (294)
||||++|+..++++|++.+|+|.+. . ...++|+||++||.|||+||+||+|+++|+.|+.+.+..+.++++.++
T Consensus 39 GIFR~sG~~~~i~~l~~~~d~~~~~-~-----~~~~~~~vaslLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~~ 112 (202)
T cd04394 39 GLFRKSGSVVRQKELKAKLEGGEAC-L-----SSALPCDVAGLLKQFFRELPEPLLPYDLHEALLKAQELPTDEERKSAT 112 (202)
T ss_pred CeeeCCCCHHHHHHHHHHHcCCCCC-c-----cccCHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999999999998654 1 126899999999999999999999999999999999888888899999
Q ss_pred HHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCC
Q psy5716 235 KKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD 287 (294)
Q Consensus 235 ~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~ 287 (294)
+.++.+||..|+.+|+||+.||++|++|++.|||++.|||+||||+||++.++
T Consensus 113 ~~l~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP~L~~~~~~ 165 (202)
T cd04394 113 LLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAPNLFQSEEG 165 (202)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcceeecCCCc
Confidence 99999999999999999999999999999999999999999999999999754
No 18
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.5e-36 Score=262.65 Aligned_cols=131 Identities=31% Similarity=0.466 Sum_probs=120.4
Q ss_pred ceeecCCCHHHHHHHHHHHhcCCCc-CccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHH
Q psy5716 155 LFPRVPGNTAAVSSLTEAVNKGLDA-SVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMAT 233 (294)
Q Consensus 155 GIfR~~g~~~~i~~l~~~~~~~~~~-~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~ 233 (294)
||||++|+..++++|++.+|++... .++. ...|+|++|++||+|||+||+||+|.++|+.|+++.+..+.++++.+
T Consensus 42 GIFR~~G~~~~i~~l~~~ld~~~~~~~~~~---~~~~~h~va~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~ 118 (216)
T cd04391 42 GILRIPGSAQRVKFLCQELEAKFYEGTFLW---DQVKQHDAASLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQA 118 (216)
T ss_pred ceeecCCcHHHHHHHHHHHhcccccCcccc---ccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999999999999986432 2332 23799999999999999999999999999999999888888899999
Q ss_pred HHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCC
Q psy5716 234 IKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDN 288 (294)
Q Consensus 234 l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~ 288 (294)
++.++..||+.|+.+|+||+.||++|++|++.|||++.|||+||||+||++...+
T Consensus 119 l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~l~~~~~~~ 173 (216)
T cd04391 119 LNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVAMIMAPNLFPPRGKH 173 (216)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHHHHhccccCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999996544
No 19
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=100.00 E-value=2.2e-36 Score=256.26 Aligned_cols=146 Identities=27% Similarity=0.451 Sum_probs=132.3
Q ss_pred CCccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCC
Q psy5716 135 GSNIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLT 211 (294)
Q Consensus 135 ~~~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~ 211 (294)
|...+..++.|+.+++..+. ||||++|+...+++|++.+|+|...+ +.+ +|+|+||++||.|||+||+||||
T Consensus 17 g~~iP~~v~~~i~~l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~~--~~~---~d~h~va~lLK~fLReLP~pLi~ 91 (182)
T cd04381 17 GIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNRRESPN--LEE---YEPPTVASLLKQYLRELPEPLLT 91 (182)
T ss_pred CCcCChHHHHHHHHHHHhCCCCCceeecCCcHHHHHHHHHHHcCCCCCC--ccc---cChHHHHHHHHHHHHhCCCccCC
Confidence 45666777888887755444 99999999999999999999987643 322 79999999999999999999999
Q ss_pred cchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccC
Q psy5716 212 TELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAG 285 (294)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~ 285 (294)
.++|+.|+++.+..+..+++..++.++.+||+.|+.+|+||+.||.+|+++++.|+|+++|||+||||+|+.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~r~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~l~~~~ 165 (182)
T cd04381 92 KELMPRFEEACGRPTEAEREQELQRLLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSPTVQISN 165 (182)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCccccCcH
Confidence 99999999999888999999999999999999999999999999999999999999999999999999998764
No 20
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.1e-36 Score=264.31 Aligned_cols=155 Identities=25% Similarity=0.303 Sum_probs=133.0
Q ss_pred CCCccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCC
Q psy5716 134 PGSNIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLL 210 (294)
Q Consensus 134 ~~~~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi 210 (294)
..+..+..++.|+.+++..+. ||||++|+..++++|++.||++.+..... +...+|+|++|++||+|||+||+|||
T Consensus 28 ~~~~IP~iv~~ci~~l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~-~~~~~~vh~va~lLK~fLReLPePLi 106 (225)
T cd04396 28 VYGYIPVVVAKCGVYLKENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSF-DWDGYTVHDAASVLRRYLNNLPEPLV 106 (225)
T ss_pred cCCCCChHHHHHHHHHHHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcC-CccCCCHHHHHHHHHHHHHhCCCccC
Confidence 345667778899888855444 99999999999999999999875431111 12347999999999999999999999
Q ss_pred CcchHHHHHHhhcC-----------------CCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccch
Q psy5716 211 TTELYPHFIQADKI-----------------EDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNL 273 (294)
Q Consensus 211 ~~~~~~~~~~~~~~-----------------~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nL 273 (294)
|.++|++|+++... .+.++++..++.++.+||+.||.+|+||+.||++|++|++.|||+++||
T Consensus 107 p~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NL 186 (225)
T cd04396 107 PLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNRQLLLYLLDLLAVFARNSDKNLMTASNL 186 (225)
T ss_pred CHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccCChhhh
Confidence 99999999886542 4567889999999999999999999999999999999999999999999
Q ss_pred hHhhcccccccCCCCc
Q psy5716 274 AIMFGPTLVRAGDDNM 289 (294)
Q Consensus 274 Aivf~P~L~~~~~~~~ 289 (294)
|+||||+||++++++|
T Consensus 187 AivfaP~Ll~~~~~~~ 202 (225)
T cd04396 187 AAIFQPGILSHPDHEM 202 (225)
T ss_pred heeeccccCCCCcccc
Confidence 9999999999987655
No 21
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.8e-36 Score=260.36 Aligned_cols=145 Identities=28% Similarity=0.386 Sum_probs=126.8
Q ss_pred cccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHHHH
Q psy5716 142 LQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHF 218 (294)
Q Consensus 142 L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~~ 218 (294)
+..|+.+.+. +. ||||++|+..++++|++.+|+|.+.++... .+|+|+||++||+|||+||+||||.++|+.|
T Consensus 13 v~~~i~~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~---~~~~h~va~lLK~flReLPePLi~~~~y~~~ 88 (208)
T cd04392 13 IYQLIEYLEK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESG---GFHAHDCATVLKGFLGELPEPLLTHAHYPAH 88 (208)
T ss_pred HHHHHHHHHh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccc---cCCHHHHHHHHHHHHHhCCCccCCHHHHHHH
Confidence 4467777754 44 999999999999999999999877544332 2799999999999999999999999999999
Q ss_pred HHhhc------------CCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCC
Q psy5716 219 IQADK------------IEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD 286 (294)
Q Consensus 219 ~~~~~------------~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~ 286 (294)
+.+.+ ..+.+.++..++.++.+||++||.+|+||+.||++|+++++.|||++.|||+||||+|+++.+
T Consensus 89 ~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~ 168 (208)
T cd04392 89 LQIADLCQFDEKGNKTSAPDKERLLEALQLLLLLLPEENRNLLKLILDLLYQTAKHEDKNKMSADNLALLFTPHLICPRN 168 (208)
T ss_pred HHHHHhhcccccccccCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHhCcccCCCCC
Confidence 87653 245567789999999999999999999999999999999999999999999999999999877
Q ss_pred CCcc
Q psy5716 287 DNMV 290 (294)
Q Consensus 287 ~~~~ 290 (294)
.+..
T Consensus 169 ~~~~ 172 (208)
T cd04392 169 LTPE 172 (208)
T ss_pred CCHH
Confidence 6654
No 22
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=3.6e-36 Score=255.96 Aligned_cols=147 Identities=29% Similarity=0.499 Sum_probs=129.2
Q ss_pred ccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcc
Q psy5716 137 NIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTE 213 (294)
Q Consensus 137 ~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~ 213 (294)
..+..|..|++++...+. ||||++|+..+++++++.+|++.+. ++.. .+|+|+||++||+|||+||+||||++
T Consensus 14 ~vP~~l~~~~~~l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~-~~~~---~~~~~~va~~LK~flr~LpepLi~~~ 89 (186)
T cd04377 14 SVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDPDS-VNLE---DYPIHVITSVLKQWLRELPEPLMTFE 89 (186)
T ss_pred CCChHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcc-cCcc---cCCHHHHHHHHHHHHHcCCCccCCHH
Confidence 344445566655533222 9999999999999999999998443 3333 37999999999999999999999999
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCC
Q psy5716 214 LYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD 287 (294)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~ 287 (294)
.|++|+.+.+..+..+++..++.++.+||+.|+.+|.||+.||++|+++++.|+|++.|||+||||+|+|++++
T Consensus 90 ~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~ll~~~~~ 163 (186)
T cd04377 90 LYENFLRAMELEEKQERVRALYSVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCILRCPDT 163 (186)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhHhcCCCCC
Confidence 99999999998888999999999999999999999999999999999999999999999999999999999764
No 23
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.5e-36 Score=261.44 Aligned_cols=148 Identities=33% Similarity=0.505 Sum_probs=125.4
Q ss_pred cccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcch
Q psy5716 138 IGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTEL 214 (294)
Q Consensus 138 fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~ 214 (294)
.+..++.|+.+++..+. ||||++|+..++++|++.||+|.+. ++.. .+|+|++|++||+|||+||+||||.++
T Consensus 16 iP~il~~ci~~ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~-~~~~---~~~~h~va~~LK~fLReLPePLi~~~~ 91 (211)
T cd04409 16 IPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGKDL-VELS---ELSPHDISNVLKLYLRQLPEPLILFRL 91 (211)
T ss_pred CCcHHHHHHHHHHHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCc-cccc---cCCHHHHHHHHHHHHHhCCCcccCHHH
Confidence 34445677777755444 9999999999999999999998754 3332 379999999999999999999999999
Q ss_pred HHHHHHhhcCC---C-------------------HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccc
Q psy5716 215 YPHFIQADKIE---D-------------------PATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARN 272 (294)
Q Consensus 215 ~~~~~~~~~~~---~-------------------~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~n 272 (294)
|++|+++.+.. + ...++..++.++.+||.+||.+|+||+.||++|++|++.|+|++.|
T Consensus 92 ~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~N 171 (211)
T cd04409 92 YNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLIVHLHRVSEQAEENKMSASN 171 (211)
T ss_pred HHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHcccccCCCChHH
Confidence 99999876421 0 0124678999999999999999999999999999999999999999
Q ss_pred hhHhhcccccccCCCCc
Q psy5716 273 LAIMFGPTLVRAGDDNM 289 (294)
Q Consensus 273 LAivf~P~L~~~~~~~~ 289 (294)
||+||||+|||+..++.
T Consensus 172 LAivf~P~Llrp~~~~~ 188 (211)
T cd04409 172 LGIIFGPTLIRPRPTDA 188 (211)
T ss_pred hhhhccccccCCCCCCc
Confidence 99999999999976553
No 24
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=100.00 E-value=2.8e-36 Score=257.02 Aligned_cols=149 Identities=22% Similarity=0.354 Sum_probs=131.5
Q ss_pred CccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCc
Q psy5716 136 SNIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTT 212 (294)
Q Consensus 136 ~~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~ 212 (294)
...+..+..|+.+++..++ ||||++|+.. +.+|++.+|++... ++++ .+|+|+||++||+|||+||+||||+
T Consensus 13 ~~~P~iv~~ci~~IE~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~-~d~~---~~dv~~va~~LK~ylReLPePLip~ 87 (200)
T cd04388 13 DVAPPLLIKLVEAIEKKGLESSTLYRTQSSSS-LTELRQILDCDAAS-VDLE---QFDVAALADALKRYLLDLPNPVIPA 87 (200)
T ss_pred CCCCHHHHHHHHHHHHhCCCCCceeeCCCccH-HHHHHHHHhcCCCC-CCcc---cccHHHHHHHHHHHHHhCCCccCCH
Confidence 4556678899999988887 9999999875 78899999985332 4433 4899999999999999999999999
Q ss_pred chHHHHHHhh-cCCCHHHHHHHHHHHHh--hCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCCc
Q psy5716 213 ELYPHFIQAD-KIEDPATRMATIKKLVH--ELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNM 289 (294)
Q Consensus 213 ~~~~~~~~~~-~~~~~~~~~~~l~~ll~--~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~~ 289 (294)
++|++|++++ ...+.++++..++.++. .||+.||.||+||+.||.+|++|++.|+|+++|||+||||+|||++.+..
T Consensus 88 ~~y~~fi~~~~~~~~~~~~~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r~~~~~~ 167 (200)
T cd04388 88 PVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFRFQPASS 167 (200)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhcCCCcccc
Confidence 9999999986 45677889999999998 89999999999999999999999999999999999999999999976543
No 25
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.4e-36 Score=261.15 Aligned_cols=150 Identities=29% Similarity=0.374 Sum_probs=132.4
Q ss_pred CccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCc
Q psy5716 136 SNIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTT 212 (294)
Q Consensus 136 ~~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~ 212 (294)
...+..++.|+.+.+..+. ||||++|+..++++|++.+|++.....+.. .+|+|++|++||+|||+||+||+|.
T Consensus 25 ~~IP~~l~~~i~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~---~~~~~~va~lLK~flReLPepLi~~ 101 (213)
T cd04397 25 LRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLS---KENPVQLAALLKKFLRELPDPLLTF 101 (213)
T ss_pred CCCCHHHHHHHHHHHHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccc---cCcHHHHHHHHHHHHHhCCCccCCH
Confidence 3456667788887755444 999999999999999999999765423332 3799999999999999999999999
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccc-----ccCCCccchhHhhcccccccCCC
Q psy5716 213 ELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSE-----VNKMEARNLAIMFGPTLVRAGDD 287 (294)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~-----~NkM~~~nLAivf~P~L~~~~~~ 287 (294)
++|+.|+++.+..+.+++...++.++..||+.||.+|+||+.||++|+.+++ .|||++.|||+||||+|+++..+
T Consensus 102 ~~y~~~i~~~~~~~~~~~~~~l~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~NkM~~~NLAivf~P~Ll~~~~~ 181 (213)
T cd04397 102 KLYRLWISSQKIEDEEERKRVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETGSKMDIHNLATVITPNILYSKTD 181 (213)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhcccCCCcCChHHhHHhhcccccCCCCC
Confidence 9999999999999999999999999999999999999999999999998765 59999999999999999999776
Q ss_pred C
Q psy5716 288 N 288 (294)
Q Consensus 288 ~ 288 (294)
+
T Consensus 182 ~ 182 (213)
T cd04397 182 N 182 (213)
T ss_pred C
Confidence 5
No 26
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.6e-36 Score=256.00 Aligned_cols=129 Identities=31% Similarity=0.522 Sum_probs=121.8
Q ss_pred ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHH
Q psy5716 155 LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATI 234 (294)
Q Consensus 155 GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l 234 (294)
||||++|+...++++++.+|+|...++ ..+|+|++|++||+|||+||+||+|.+.|+.|+.+.+..+.++++..+
T Consensus 35 GiFR~~g~~~~i~~l~~~~~~~~~~~~-----~~~~~~~va~~lK~flreLpepLi~~~~~~~~~~~~~~~~~~~~i~~l 109 (192)
T cd04402 35 GIFRRSANAKACKELKEKLNSGVEVDL-----KAEPVLLLASVLKDFLRNIPGSLLSSDLYEEWMSALDQENEEEKIAEL 109 (192)
T ss_pred CeeeCCCcHHHHHHHHHHHhCCCCCCC-----ccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHH
Confidence 999999999999999999999865433 238999999999999999999999999999999999888999999999
Q ss_pred HHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCC
Q psy5716 235 KKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDN 288 (294)
Q Consensus 235 ~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~ 288 (294)
+.++.+||..|+.+|.||+.||++|+.+++.|+|+++|||+||||+|||++.++
T Consensus 110 ~~~i~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~l~~~~~~~ 163 (192)
T cd04402 110 QRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLLWPPASS 163 (192)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhccccccCCCCcc
Confidence 999999999999999999999999999999999999999999999999998754
No 27
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=100.00 E-value=4.8e-36 Score=256.01 Aligned_cols=151 Identities=32% Similarity=0.446 Sum_probs=135.1
Q ss_pred CCCccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCC
Q psy5716 134 PGSNIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLL 210 (294)
Q Consensus 134 ~~~~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi 210 (294)
.+...+..|..|+.+++..+. ||||++|+..+++++++.|++|... .+.. ..|+|++|++||+|||+||+|||
T Consensus 13 ~~~~IP~~l~~ci~~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~-~~~~---~~d~h~vaslLK~fLReLPePLi 88 (193)
T cd04382 13 TSPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTV-PNLS---KVDIHVICGCLKDFLRSLKEPLI 88 (193)
T ss_pred CCCCccHHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCC-cccc---cCCHHHHHHHHHHHHHhCCCcCC
Confidence 345666678899998865554 9999999999999999999987654 2222 26999999999999999999999
Q ss_pred CcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCCc
Q psy5716 211 TTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNM 289 (294)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~~ 289 (294)
|.++|+.|+++.+..+.++++..++.++..||+.||.+|+||+.||++|++ ++.|||++.|||+||||+||+.+..+.
T Consensus 89 ~~~~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~~~ 166 (193)
T cd04382 89 TFALWKEFMEAAEILDEDNSRAALYQAISELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVPNP 166 (193)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCCCc
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999999876543
No 28
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.7e-36 Score=257.72 Aligned_cols=148 Identities=32% Similarity=0.517 Sum_probs=130.5
Q ss_pred cccccccccccCC---ceeecCCCHHHHHHHHHH-HhcCC--CcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchH
Q psy5716 142 LQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEA-VNKGL--DASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELY 215 (294)
Q Consensus 142 L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~-~~~~~--~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~ 215 (294)
+..|+.+++..+. ||||++|+..+|+++++. +|.+. ..++++.. ..+|+|+||++||+|||+||+||||+++|
T Consensus 32 v~~ci~~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~-~~~d~h~va~lLK~fLReLPePLi~~~~y 110 (203)
T cd04374 32 VRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDN-SEWEIKTITSALKTYLRNLPEPLMTYELH 110 (203)
T ss_pred HHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCcccccccc-ccccHHHHHHHHHHHHHcCCCCcCCHHHH
Confidence 5789998865555 999999999999999875 56542 11233322 14799999999999999999999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCCcc
Q psy5716 216 PHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMV 290 (294)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~~~ 290 (294)
+.|+.+.+..+.++++..++.++.+||++|+.+|+||+.||++|+++++.|||++.|||+||||+|+|+..+++.
T Consensus 111 ~~~i~~~~~~~~~~ri~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~~~~ 185 (203)
T cd04374 111 NDFINAAKSENLESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQEETVA 185 (203)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCCccHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999877654
No 29
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.1e-35 Score=253.85 Aligned_cols=148 Identities=27% Similarity=0.470 Sum_probs=126.8
Q ss_pred cccccccccccccccC----CceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcc
Q psy5716 138 IGVPLQHCVSVNLLCP----FLFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTE 213 (294)
Q Consensus 138 fgv~L~~~~~~~~~~p----~GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~ 213 (294)
.+..+..|+.+.+..+ .||||++|+...++++++.+|++.+.++. ......|+|+||++||.|||+||+||||.+
T Consensus 22 iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~-~~~~~~d~h~va~lLK~flreLP~PLi~~~ 100 (190)
T cd04400 22 LPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLF-SSSLYPDVHTVAGLLKLYLRELPTLILGGE 100 (190)
T ss_pred CChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCcc-ccccccCHHHHHHHHHHHHHhCCcccCCHH
Confidence 3333455555552221 29999999999999999999998664332 122348999999999999999999999999
Q ss_pred hHHHHHHhhcCC-CHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCC
Q psy5716 214 LYPHFIQADKIE-DPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD 286 (294)
Q Consensus 214 ~~~~~~~~~~~~-~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~ 286 (294)
+|+.|..+.+.. +.++++..++.++.+||+.|+.+|++|+.||++|+.+++.|+||++|||+||||+|+++.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLa~vf~P~L~~~~~ 174 (190)
T cd04400 101 LHNDFKRLVEENHDRSQRALELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLRNVCIVFSPTLNIPAG 174 (190)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHhhhhcCCCCCCCHH
Confidence 999999988766 7889999999999999999999999999999999999999999999999999999998854
No 30
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.5e-35 Score=254.01 Aligned_cols=150 Identities=29% Similarity=0.476 Sum_probs=134.1
Q ss_pred CCCccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCC
Q psy5716 134 PGSNIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLL 210 (294)
Q Consensus 134 ~~~~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi 210 (294)
.++..+..++.|+.+++..+. ||||++|+..++++|++.+|+|.+..++ ...|+|+||++||.|||+||+||+
T Consensus 5 ~~~~iP~iv~~ci~~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~----~~~~~h~va~lLK~fLReLPePLi 80 (206)
T cd04376 5 IARQVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLD----ENHSVHDVAALLKEFFRDMPDPLL 80 (206)
T ss_pred CCCCCCHHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCc----ccCCHHHHHHHHHHHHHhCCCccC
Confidence 345667778899998865555 9999999999999999999998775432 237999999999999999999999
Q ss_pred CcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccc-----------ccCCCccchhHhhcc
Q psy5716 211 TTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSE-----------VNKMEARNLAIMFGP 279 (294)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~-----------~NkM~~~nLAivf~P 279 (294)
|+++|+.|+.+.+.. .++++..++.++.+||+.||.+|+||+.||++|++|++ .|||+++|||+||||
T Consensus 81 ~~~~y~~~i~~~~~~-~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P 159 (206)
T cd04376 81 PRELYTAFIGTALLE-PDEQLEALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGP 159 (206)
T ss_pred CHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhc
Confidence 999999999998765 67889999999999999999999999999999999986 799999999999999
Q ss_pred cccccCCCC
Q psy5716 280 TLVRAGDDN 288 (294)
Q Consensus 280 ~L~~~~~~~ 288 (294)
+|+|++.++
T Consensus 160 ~Ll~~~~~~ 168 (206)
T cd04376 160 NLLHKQKSG 168 (206)
T ss_pred cccCCCCCc
Confidence 999997654
No 31
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.8e-35 Score=251.87 Aligned_cols=154 Identities=36% Similarity=0.573 Sum_probs=132.7
Q ss_pred CccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCC--CCCCcchHHHHHHHHHHHhhCCCCCC
Q psy5716 136 SNIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQ--DPRWSDVNVISSLLKSFFRRLPDSLL 210 (294)
Q Consensus 136 ~~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~--~~~~~dv~~va~lLK~fLreLP~pLi 210 (294)
...+..+..|++..+..+. ||||++|+...++++++.+|++... ++.. +....|+|++|++||+|||+||+||+
T Consensus 14 ~~iP~~v~~~i~~l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~-~~~~~~~~~~~d~~~va~~LK~fLreLp~pLi 92 (192)
T cd04398 14 DNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLN-VLLISPEDYESDIHSVASLLKLFFRELPEPLL 92 (192)
T ss_pred CCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHccCCcc-ccccccccccccHHHHHHHHHHHHHhCCCccC
Confidence 3444556667666543333 9999999999999999999997643 2211 12236999999999999999999999
Q ss_pred CcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCCcc
Q psy5716 211 TTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMV 290 (294)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~~~ 290 (294)
|.+.|+.|+++.+.++..+++..++.++.+||..|+.+|+||+.||++|+.+++.|+|++.|||+||||+|++++.++..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~l~~~~~~~~~ 172 (192)
T cd04398 93 TKALSREFIEAAKIEDESRRRDALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIWGPTLMNAAPDNAA 172 (192)
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHHHHHhhhhCCCCccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876543
No 32
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=100.00 E-value=4.4e-35 Score=249.94 Aligned_cols=142 Identities=26% Similarity=0.402 Sum_probs=123.4
Q ss_pred cccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHHHH
Q psy5716 142 LQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHF 218 (294)
Q Consensus 142 L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~~ 218 (294)
|..|+.+++..+. ||||++|+...++++++.+|+|...++. .++|+|++|++||+|||+||+||+|.+.|+.|
T Consensus 24 l~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~----~~~d~~~va~~lK~flr~Lp~pLi~~~~~~~l 99 (189)
T cd04393 24 VRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLS----KEADVCSAASLLRLFLQELPEGLIPASLQIRL 99 (189)
T ss_pred HHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCcc----ccCCHHHHHHHHHHHHHhCCCccCCHHHHHHH
Confidence 4445544432222 9999999999999999999998765332 23899999999999999999999999999999
Q ss_pred HHhhcCC-CHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCC
Q psy5716 219 IQADKIE-DPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD 287 (294)
Q Consensus 219 ~~~~~~~-~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~ 287 (294)
+.+.+.. +.++++..++.++.+||+.|+.+|.||+.||++|++|++.|+|++.|||+||||+||+.+.+
T Consensus 100 ~~~~~~~~~~~~~~~~l~~li~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~vf~P~l~~~~~~ 169 (189)
T cd04393 100 MQLYQDYNGEDEFGRKLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVFGPDVFHVYTD 169 (189)
T ss_pred HHHHHHccChHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhhccCceeCCCCC
Confidence 9986543 67788899999999999999999999999999999999999999999999999999998664
No 33
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.1e-35 Score=253.21 Aligned_cols=156 Identities=17% Similarity=0.210 Sum_probs=131.9
Q ss_pred CCccccccccccccccccC-----C----ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhC
Q psy5716 135 GSNIGVPLQHCVSVNLLCP-----F----LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRL 205 (294)
Q Consensus 135 ~~~fgv~L~~~~~~~~~~p-----~----GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreL 205 (294)
+...+..++.|+.+++... . ||||++|+.+.+++||+.||++.+.+....+...+|+|+||++||.|||||
T Consensus 13 ~~~VP~vV~~ci~~ie~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv~~va~~LK~ylReL 92 (212)
T cd04399 13 KKVVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEPSTVASVLKLYLLEL 92 (212)
T ss_pred CCCCCHHHHHHHHHHHHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCHHHHHHHHHHHHHHC
Confidence 4456666778888775421 1 999999999999999999999876533221244589999999999999999
Q ss_pred CCCCCCcchHHHHHHhhc------CCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccc---CCCccchhHh
Q psy5716 206 PDSLLTTELYPHFIQADK------IEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVN---KMEARNLAIM 276 (294)
Q Consensus 206 P~pLi~~~~~~~~~~~~~------~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~N---kM~~~nLAiv 276 (294)
|+||+|+++|+.|+++.. .++.++|+..++.++.+||..|+.+|++|+.||.+|++++..| ||+++|||+|
T Consensus 93 PepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~~l~~LP~~n~~~L~~li~hL~rv~~~~~~~~~~kM~~~nLa~v 172 (212)
T cd04399 93 PDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTLSQLPKSHIATLDAIITHFYRLIEITKMGESEEEYADKLATS 172 (212)
T ss_pred CCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHH
Confidence 999999999999987642 3567899999999999999999999999999999999987666 5999999999
Q ss_pred hcccccccCCCCcc
Q psy5716 277 FGPTLVRAGDDNMV 290 (294)
Q Consensus 277 f~P~L~~~~~~~~~ 290 (294)
|||+|+|+..+...
T Consensus 173 fgp~llr~~~~~~~ 186 (212)
T cd04399 173 LSREILRPIIESLL 186 (212)
T ss_pred hhhhhcCCCccccc
Confidence 99999999776654
No 34
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=6.3e-35 Score=248.16 Aligned_cols=127 Identities=28% Similarity=0.434 Sum_probs=112.3
Q ss_pred ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHH
Q psy5716 155 LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATI 234 (294)
Q Consensus 155 GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l 234 (294)
||||++|+...++++++.+|+|... + ....|+|++|++||+|||+||+||+|.++|++++++.+ + .+.+
T Consensus 42 GIFR~~G~~~~i~~l~~~~d~~~~~-~----~~~~d~h~va~lLK~fLReLpePli~~~~~~~~i~~~~--~----~~~~ 110 (187)
T cd04389 42 GIFRVPGDIDEVNELKLRVDQWDYP-L----SGLEDPHVPASLLKLWLRELEEPLIPDALYQQCISASE--D----PDKA 110 (187)
T ss_pred CeeeCCCCHHHHHHHHHHHhcCCCC-c----cccCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhc--C----HHHH
Confidence 9999999999999999999997543 1 23379999999999999999999999999999998653 1 2457
Q ss_pred HHHHhhCChhHHHHHHHHHHHHHHHHhcc--cccCCCccchhHhhcccccccCCCCcccc
Q psy5716 235 KKLVHELPEHHFQTLKYILQHLKRVVDNS--EVNKMEARNLAIMFGPTLVRAGDDNMVTM 292 (294)
Q Consensus 235 ~~ll~~LP~~n~~~L~~L~~~L~~v~~~~--~~NkM~~~nLAivf~P~L~~~~~~~~~~m 292 (294)
++++.+||+.|+.+|.||+.||++|++++ +.|||+++|||+||||+|+|+..++...+
T Consensus 111 ~~li~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAivf~P~l~~~~~~~~~~~ 170 (187)
T cd04389 111 VEIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMVFAPNILRCTSDDPRVI 170 (187)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHccccCCCCCCCHHHH
Confidence 88999999999999999999999999754 78999999999999999999987777654
No 35
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.5e-34 Score=247.83 Aligned_cols=151 Identities=34% Similarity=0.568 Sum_probs=131.1
Q ss_pred CCCccccccccccccc---cccCC-----------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHH
Q psy5716 134 PGSNIGVPLQHCVSVN---LLCPF-----------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNV 193 (294)
Q Consensus 134 ~~~~fgv~L~~~~~~~---~~~p~-----------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~ 193 (294)
+..+||+||+.+.... ..+|. ||||++|+...++++++.+|+|...++ .. ..|+|+
T Consensus 2 ~~~~FGv~L~~~~~~~~~~~~iP~il~~~i~~l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~--~~--~~d~~~ 77 (195)
T cd04404 2 PTQQFGVSLQFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMGEPVDF--DQ--YEDVHL 77 (195)
T ss_pred CCCcCCCcHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCc--cc--ccCHHH
Confidence 3567888887554432 34555 999999999999999999999865433 21 259999
Q ss_pred HHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccch
Q psy5716 194 ISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNL 273 (294)
Q Consensus 194 va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nL 273 (294)
+|++||+|||+||+||+|.+.|+.++.+.+.+ ..+++..++.++.+||+.|+.+|.+|+.||++|+++++.|+|+++||
T Consensus 78 va~~LK~~lr~Lp~pLi~~~~~~~l~~~~~~~-~~~~~~~~~~~i~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nL 156 (195)
T cd04404 78 PAVILKTFLRELPEPLLTFDLYDDIVGFLNVD-KEERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNL 156 (195)
T ss_pred HHHHHHHHHHhCCCccCCHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHh
Confidence 99999999999999999999999999987654 67788999999999999999999999999999999999999999999
Q ss_pred hHhhcccccccCCCCc
Q psy5716 274 AIMFGPTLVRAGDDNM 289 (294)
Q Consensus 274 Aivf~P~L~~~~~~~~ 289 (294)
|+||||+|+|+++..+
T Consensus 157 a~vfaP~l~~~~~~~~ 172 (195)
T cd04404 157 AVVFGPNLLWAKDASM 172 (195)
T ss_pred heeeeccccCCCCccc
Confidence 9999999999977644
No 36
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.5e-34 Score=245.58 Aligned_cols=151 Identities=34% Similarity=0.514 Sum_probs=134.2
Q ss_pred CCccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCC
Q psy5716 135 GSNIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLT 211 (294)
Q Consensus 135 ~~~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~ 211 (294)
+...+..+..|+.+++..+. ||||++|+...+++|++.++++... ... ++..+|+|+||++||.|||+||+||||
T Consensus 12 ~~~iP~~v~~~i~~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~-~~~-~~~~~d~~~va~llK~yLreLP~pLi~ 89 (184)
T cd04385 12 DNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARS-VQL-REGEYTVHDVADVLKRFLRDLPDPLLT 89 (184)
T ss_pred CCCCChHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCc-CCC-CcccCCHHHHHHHHHHHHHhCCCccCC
Confidence 34555667899988865554 9999999999999999999886432 221 133489999999999999999999999
Q ss_pred cchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCC
Q psy5716 212 TELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD 287 (294)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~ 287 (294)
.+.|++|+.+.+..+.++++..++.++.+||+.|+.+|++|+.||++|+++++.|+|+++|||+||||+|||+.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~P~ll~~~~~ 165 (184)
T cd04385 90 SELHAEWIEAAELENKDERIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPTLFQTDEH 165 (184)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhccccCCCCcc
Confidence 9999999999998999999999999999999999999999999999999999999999999999999999999865
No 37
>KOG1450|consensus
Probab=100.00 E-value=3.5e-34 Score=274.51 Aligned_cols=276 Identities=28% Similarity=0.436 Sum_probs=202.7
Q ss_pred cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhhccCCcC----C-C-CCCCccccc
Q psy5716 6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASES----N-I-SPASGQKNR 79 (294)
Q Consensus 6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~~~~~~~----~-~-sP~~~~~~k 79 (294)
.+.+++++...-......+++++.+++. .+.+|+.+..++.....|.....++++......+ + . ++.+.....
T Consensus 310 ~sps~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~net~~~d~~~~~~~~~~~~~~~~s~~s~g~~~~~~P~s~~~ 388 (650)
T KOG1450|consen 310 QSPSLSPAMVSASKNKSTRKNTLWLTTN-RTSKVLNRSHNETSFEDWSSNLPEVINELPNSASPNSQGDLESTLPESDSP 388 (650)
T ss_pred CCcccchhhhccccccCCccceeeeeec-CCceeeecCCCCccccchhhcchhhhhccCCCCCCCCCCCCCCCCCCCccc
Confidence 4556677777766778889999999999 9999999999999999999999998875332111 1 1 111111100
Q ss_pred ccccCCCCCCCCCC-----------C--CCCCCCCCCChhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCccccccc-cc
Q psy5716 80 KFASASTSPRKSSA-----------T--EATLPPSPKSKTWKGRVAKQFRRIQAGAGSPNSPHPPYPPGSNIGVPLQ-HC 145 (294)
Q Consensus 80 k~~~~~~k~rk~s~-----------~--~~~~~~spk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fgv~L~-~~ 145 (294)
... .....++.++ . ............-..++.+.+....-.. ...+...+....+||++|+ .|
T Consensus 389 ~~~-~~~~~~~~sp~ss~p~~~~ss~ist~~~~~~~~~~~~~~~l~~~~s~rp~v~--s~~~~g~~k~~~vFGs~Lealc 465 (650)
T KOG1450|consen 389 ESH-TSEPEEDVSPVSSKPLEGLSSPISTTLGPECHEQQDPQKKLTKNFSTRPIVQ--SSREPGKPKFDKVFGSPLEALC 465 (650)
T ss_pred ccc-ccCcccccCcccccccccccccceecCCcccccccchHHHHHHhhhccchhh--hccccCccccCcccCccHHHHh
Confidence 000 0000000000 0 0001101111122223333333322111 1112234566899999998 66
Q ss_pred cccccccCC-----------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCC
Q psy5716 146 VSVNLLCPF-----------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDS 208 (294)
Q Consensus 146 ~~~~~~~p~-----------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~p 208 (294)
.+....+|. ||||++|+...|++|+..+|. +..+++.+..|.|+|+|+++||.||||||+|
T Consensus 466 ~rE~~~vP~~V~~c~~~IE~~GLd~~GiYRVsgnl~~Vnklr~~~d~--d~~l~l~~~~~~dihai~galK~ffreLpdp 543 (650)
T KOG1450|consen 466 QRENGLVPKIVRLCIEHIEKFGLDSDGIYRVSGNLASVNKLREQSDQ--DNSLDLADDRWDDIHAITGALKTFFRELPDP 543 (650)
T ss_pred hccCCCcchHHHHHHHHHhhhcccCCceeeecchHHHHHHHHHhcCc--cccccccccchhHHHHHHHHHHHHHHhcCCc
Confidence 666677776 999999999999999999994 4446777888999999999999999999999
Q ss_pred CCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCC
Q psy5716 209 LLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD 287 (294)
Q Consensus 209 Li~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~ 287 (294)
|++..++.+|..+....+...+...+++++..||.+||.||+||+.||++|..|+++|||+.+||||||||+|+.+.++
T Consensus 544 L~p~~l~~~f~~a~~~~~~~~r~~~~~~li~~lP~~n~~Tlr~lv~HL~rv~shs~kNrMs~~NLaIVfgpTl~~~~~~ 622 (650)
T KOG1450|consen 544 LFPKALSKDFTVALQGELSHTRVDKVEELIGLLPDANYQTLRYLVRHLRRVLSHSDKNRMSRHNLAIVFGPTLIKPEQE 622 (650)
T ss_pred ccChhHhHHHHHHhcccchhhHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhccccccccccceEEEecccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997554
No 38
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=99.97 E-value=5e-31 Score=221.93 Aligned_cols=148 Identities=40% Similarity=0.635 Sum_probs=132.7
Q ss_pred ccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchH
Q psy5716 139 GVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELY 215 (294)
Q Consensus 139 gv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~ 215 (294)
+..+..|+.+....+. ||||++|+..+++++++.++++...+.. ...+|+|++|++||.|||+||+||||.+.|
T Consensus 4 P~~l~~~~~~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~ 80 (174)
T smart00324 4 PIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLD---LSEYDVHDVAGLLKLFLRELPEPLIPYELY 80 (174)
T ss_pred ChHHHHHHHHHHHcCCCccceeecCCcHHHHHHHHHHHhCCCCCCcc---cccCCHHHHHHHHHHHHHhCCCccCCHHHH
Confidence 4456778777744433 9999999999999999999998765321 234899999999999999999999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCCc
Q psy5716 216 PHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNM 289 (294)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~~ 289 (294)
+.|+++.+..+.++++..++.++.+||+.|+.+|.+|+.||++|+.+++.|+|+++|||+||||+|+++++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~~ 154 (174)
T smart00324 81 EEFIEAAKVEDETERLRALRELISLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEV 154 (174)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCcccH
Confidence 99999998888899999999999999999999999999999999999999999999999999999999987664
No 39
>KOG2200|consensus
Probab=99.97 E-value=2e-30 Score=242.80 Aligned_cols=154 Identities=24% Similarity=0.362 Sum_probs=137.4
Q ss_pred CCCCCCCCccccccccccccc-cccCC-----------------ceeecCCCHHHHHHHHHHHhcCCCcC-ccCCCCCCc
Q psy5716 129 HPPYPPGSNIGVPLQHCVSVN-LLCPF-----------------LFPRVPGNTAAVSSLTEAVNKGLDAS-VLEQDPRWS 189 (294)
Q Consensus 129 ~~~~~~~~~fgv~L~~~~~~~-~~~p~-----------------GIfR~~g~~~~i~~l~~~~~~~~~~~-~~~~~~~~~ 189 (294)
.+.+.++.+|||||...+... ..+|. ||||++|.+++|+.|++.++...+.. +. ++..
T Consensus 292 k~d~kd~~vFGVPL~vll~rtG~~lP~~iQq~m~~lr~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~---~d~~ 368 (674)
T KOG2200|consen 292 KVDGKDGGVFGVPLTVLLQRTGQPLPLSIQQAMRYLRERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFN---WDSQ 368 (674)
T ss_pred CCccCCCceeecCceeeeccCCCcCcHHHHHHHHHHHHhCccccceeecccHHHHHHHHHHHHhhcccCcccc---cchh
Confidence 346788999999999877654 44554 99999999999999999998865542 22 2225
Q ss_pred chHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCC
Q psy5716 190 DVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKME 269 (294)
Q Consensus 190 dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~ 269 (294)
..|++|++||+|||+||+||||.++.+.|+.+.......+++++++.++..||.+||++|+.|+.||++|+.++++|+||
T Consensus 369 ~~~DvAdlLKqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqAl~~aillLPDeNReaLktLL~FL~~V~an~e~N~MT 448 (674)
T KOG2200|consen 369 SAHDVADLLKQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQALQLAILLLPDENREALKTLLEFLNDVIANEEENQMT 448 (674)
T ss_pred hhhHHHHHHHHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhHhhcccc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHhhcccccccC
Q psy5716 270 ARNLAIMFGPTLVRAG 285 (294)
Q Consensus 270 ~~nLAivf~P~L~~~~ 285 (294)
+.|||+||||+||...
T Consensus 449 ~~NlsvcmAPsLF~l~ 464 (674)
T KOG2200|consen 449 LMNLSVCMAPSLFHLN 464 (674)
T ss_pred hhhhhhhhcchHHhhc
Confidence 9999999999999873
No 40
>KOG4269|consensus
Probab=99.97 E-value=2e-30 Score=251.34 Aligned_cols=158 Identities=31% Similarity=0.557 Sum_probs=138.2
Q ss_pred CCCCCCccccccc-------------------ccccccc-ccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCC
Q psy5716 131 PYPPGSNIGVPLQ-------------------HCVSVNL-LCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPR 187 (294)
Q Consensus 131 ~~~~~~~fgv~L~-------------------~~~~~~~-~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~ 187 (294)
.....++||.|+. .|+++.+ ..++ ||||++|++..|+.|++.||.+.+.++...+.
T Consensus 893 ~~~qTgIFG~~~~~kisv~t~~n~s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~- 971 (1112)
T KOG4269|consen 893 SVKQTGIFGLPLNVKISVVTKRNVSGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDS- 971 (1112)
T ss_pred cceeceeccccceeeEeeeeeecccCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhccc-
Confidence 3455688995443 3666664 3343 99999999999999999999986665655543
Q ss_pred CcchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccC
Q psy5716 188 WSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNK 267 (294)
Q Consensus 188 ~~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~Nk 267 (294)
..|||+|||+||+|||+||+|||+.++|..|.......++....-.+..+|.+||++|..+|.+|+.||++|++++.+||
T Consensus 972 E~dVn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i~~~npva~~~~~~~li~slP~aNl~l~~~LlehL~RI~e~ekvNK 1051 (1112)
T KOG4269|consen 972 EMDVNAIAGLLKLYLRELPEPLLTDEMYPLFEEGIALSNPVAKEGCMCDLISSLPPANLALFLFLLEHLKRIAEKEKVNK 1051 (1112)
T ss_pred cccHHHHHHHHHHHHHhCCccccchhhhHHHHhhccCCCHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHHHHhhccccc
Confidence 38999999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred CCccchhHhhcccccccCCCCc
Q psy5716 268 MEARNLAIMFGPTLVRAGDDNM 289 (294)
Q Consensus 268 M~~~nLAivf~P~L~~~~~~~~ 289 (294)
|+++||||||+|+|.+|.+.-+
T Consensus 1052 MnlrNlciVFsPTLniPse~~~ 1073 (1112)
T KOG4269|consen 1052 MNLRNLCIVFSPTLNIPSEIES 1073 (1112)
T ss_pred ccccceeeeecccccCcHHhhh
Confidence 9999999999999999976433
No 41
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=99.97 E-value=2.1e-30 Score=226.01 Aligned_cols=141 Identities=18% Similarity=0.325 Sum_probs=122.9
Q ss_pred cccccccccccccccCC---ceeecCCCHHH----HHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCC
Q psy5716 138 IGVPLQHCVSVNLLCPF---LFPRVPGNTAA----VSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLL 210 (294)
Q Consensus 138 fgv~L~~~~~~~~~~p~---GIfR~~g~~~~----i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi 210 (294)
.+..|..|+.+++..+. ||||++|+... ++++++.+|+|.+.. ...|+|++|++||.|||+||||||
T Consensus 50 iP~~l~~~i~~L~~~gl~~eGiFR~~G~~~~~~~~i~~l~~~ld~~~~~~------~~~~~~~va~~LK~fLr~LpePli 123 (220)
T cd04380 50 IPKEIWRLVDYLYTRGLAQEGLFEEPGLPSEPGELLAEIRDALDTGSPFN------SPGSAESVAEALLLFLESLPDPII 123 (220)
T ss_pred cCHHHHHHHHHHHHcCCcccCcccCCCcccchHHHHHHHHHHHhCCCCCC------CCCCHHHHHHHHHHHHHhCCCCcc
Confidence 34445689988865444 99999999999 999999999987652 238999999999999999999999
Q ss_pred CcchHHHHHHhhcCCCHHHHHHHHHHHHh-hCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCCc
Q psy5716 211 TTELYPHFIQADKIEDPATRMATIKKLVH-ELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNM 289 (294)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~~ 289 (294)
|+++|+.|+.+.. .+ ...++.++. .||++|+.+|.||+.||++|+++++.|+|++.|||+||||+|+|++.+.+
T Consensus 124 p~~~y~~~~~~~~-~~----~~~~~~ll~~~LP~~n~~~l~~L~~fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~~~~ 198 (220)
T cd04380 124 PYSLYERLLEAVA-NN----EEDKRQVIRISLPPVHRNVFVYLCSFLRELLSESADRGLDENTLATIFGRVLLRDPPRAG 198 (220)
T ss_pred CHHHHHHHHHHhc-Cc----HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHhHHHhcchhccCCcccc
Confidence 9999999999862 21 245678888 99999999999999999999999999999999999999999999987654
No 42
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=99.97 E-value=8.1e-30 Score=212.89 Aligned_cols=144 Identities=38% Similarity=0.620 Sum_probs=129.9
Q ss_pred ccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHHH
Q psy5716 141 PLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217 (294)
Q Consensus 141 ~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~ 217 (294)
.|..|+.+.+..+. ||||++|+..+++++++.++.+.... +...+|+|++|++||.|||+||+||||.+.|+.
T Consensus 3 ~l~~~~~~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~----~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~ 78 (169)
T cd00159 3 IIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDID----DLEDYDVHDVASLLKLYLRELPEPLIPFELYDE 78 (169)
T ss_pred HHHHHHHHHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCc----cccccCHHHHHHHHHHHHHcCCCccCCHHHHHH
Confidence 35677777744333 99999999999999999999987642 223489999999999999999999999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCC
Q psy5716 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDN 288 (294)
Q Consensus 218 ~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~ 288 (294)
|+.+....+...++..++.++..||+.|+.+|.+|+.||++|+.+++.|+|+++|||+||||+|+++...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~i~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~ 149 (169)
T cd00159 79 FIELAKIEDEEERIEALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSD 149 (169)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCcc
Confidence 99999888999999999999999999999999999999999999999999999999999999999997654
No 43
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=99.96 E-value=3e-30 Score=212.04 Aligned_cols=144 Identities=37% Similarity=0.603 Sum_probs=126.7
Q ss_pred ccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHHH
Q psy5716 141 PLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217 (294)
Q Consensus 141 ~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~ 217 (294)
.|..|+.+++..+. ||||++|+..+++++++.++.+..... ....+|+|++|++||+||++||+||++.+.|+.
T Consensus 3 ~l~~~~~~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~ 79 (151)
T PF00620_consen 3 ILNDCVDYLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNE---NLENYDVHDVASLLKRFLRELPEPLIPSELYDK 79 (151)
T ss_dssp HHHHHHHHHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCST---TGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccc---cccccChhhccccceeeeeccccchhhhhHHHH
Confidence 35667777644433 999999999999999999999876521 234489999999999999999999999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCC
Q psy5716 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD 287 (294)
Q Consensus 218 ~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~ 287 (294)
|+++.+..+.+++++.++.++.+||..|+.+|.+|+.||++|+.+++.|+|+++|||+||||+|++++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~~~ 149 (151)
T PF00620_consen 80 FIAASKSADEEEQIEAIRSLLQSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPPSS 149 (151)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGSTS
T ss_pred HhhhhccchhhHHHHHHHHhhhccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCCcC
Confidence 9999888999999999999999999999999999999999999999999999999999999999999764
No 44
>KOG1451|consensus
Probab=99.96 E-value=2e-29 Score=235.64 Aligned_cols=229 Identities=23% Similarity=0.365 Sum_probs=175.7
Q ss_pred cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhhccCCcCCCCCCCcccccccccCC
Q psy5716 6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASESNISPASGQKNRKFASAS 85 (294)
Q Consensus 6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~~~~~~~~~sP~~~~~~kk~~~~~ 85 (294)
+.+-|..|.--...+ -.|.++|-+..........+||-++.+...|+.++.-.. +.-.++...
T Consensus 314 ~~~~lKsC~RRktdS-IdKRFCFDve~~erpgviTmQALSE~drrlWmeAMDG~e------p~Y~s~~~~---------- 376 (812)
T KOG1451|consen 314 ATFKLKSCSRRKTDS-IDKRFCFDVEVEERPGVITMQALSEKDRRLWMEAMDGAE------PSYTSGENC---------- 376 (812)
T ss_pred ceEEehhhccCcccc-cccceeeeeeecccCCeeehHhhhhhHHHHHHHHhcCCC------ccccCcccc----------
Confidence 344455554444333 344589999887556788999999999999999985421 100111000
Q ss_pred CCCCCCCCCCCCCCCCCCChhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCccccc-cccccccccccCC---ceeecCC
Q psy5716 86 TSPRKSSATEATLPPSPKSKTWKGRVAKQFRRIQAGAGSPNSPHPPYPPGSNIGVP-LQHCVSVNLLCPF---LFPRVPG 161 (294)
Q Consensus 86 ~k~rk~s~~~~~~~~spk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fgv~-L~~~~~~~~~~p~---GIfR~~g 161 (294)
.+.+ ..-. .-+|.. +..|+..++..++ |+||..|
T Consensus 377 --------------~~~~-~~qL---------------------------d~iGF~fvrkCI~i~Et~GI~eqGlYR~vG 414 (812)
T KOG1451|consen 377 --------------STYK-QTQL---------------------------DDIGFEFVRKCIDILETSGIHEQGLYRNVG 414 (812)
T ss_pred --------------chhh-hhhh---------------------------hhhhHHHHHHHHHHHHhcCcccccchhhcc
Confidence 0000 0000 122332 4578887766665 9999999
Q ss_pred CHHHHHHHHHHH-hcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhh
Q psy5716 162 NTAAVSSLTEAV-NKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHE 240 (294)
Q Consensus 162 ~~~~i~~l~~~~-~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 240 (294)
...+|++|...+ |-....+.+......+|+.+|++.||.|||.|||||++++++..||.|++..|.+-|+.+++.++++
T Consensus 415 vns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLpEPLMTY~LHk~FI~AAKsdnq~yRv~aIHsLVHk 494 (812)
T KOG1451|consen 415 VNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLPEPLMTYELHKVFINAAKSDNQTYRVDAIHSLVHK 494 (812)
T ss_pred chHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCCchhhHHHHHHHHHHHHhccchhhhHHHHHHHHHh
Confidence 999999997664 3322223333333448999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCCccccc
Q psy5716 241 LPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTMV 293 (294)
Q Consensus 241 LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~~~~m~ 293 (294)
||..||..|..|+.||.+|+.|+.+|.||+.||++||||+|+|+.+++.++||
T Consensus 495 LPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRpQEETVAAiM 547 (812)
T KOG1451|consen 495 LPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRPQEETVAAIM 547 (812)
T ss_pred ccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998886
No 45
>KOG4270|consensus
Probab=99.95 E-value=9.9e-29 Score=236.42 Aligned_cols=129 Identities=34% Similarity=0.633 Sum_probs=122.5
Q ss_pred ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHH
Q psy5716 155 LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATI 234 (294)
Q Consensus 155 GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l 234 (294)
||||++|....++.+|+.+|.|...... +.|||++||+||.||||||+|++++.+|++|+.+....+++++.+.+
T Consensus 187 GlFRi~~~~sk~e~lr~~ld~g~v~~~~-----~iDvH~~agllKayLRELPepvl~~nL~~e~~qv~~~~~e~~~~q~l 261 (577)
T KOG4270|consen 187 GLFRINGEASKVERLREALDCGVVPDQL-----YIDVHCLAGLLKAYLRELPEPVLTFNLYKEWTQVQNCENEDEKVQLL 261 (577)
T ss_pred ceeccCCCchHHHHHHHHHcCCcccccc-----cCCHHHHHHHHHHHHHhCCCcCCCcccCHHHHHHHhccCHHHHHHHH
Confidence 9999999999999999999998765222 48999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCCC
Q psy5716 235 KKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDN 288 (294)
Q Consensus 235 ~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~~ 288 (294)
+.++..||+.|+.+|+|++.||..|++++++|||+++||||||||+|+++.++-
T Consensus 262 r~~~~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~NlAiV~gPNl~~~~~p~ 315 (577)
T KOG4270|consen 262 RQCLQKLPPTNYSLLRYLIRFLADVVEKEHVNKMSARNLAIVFGPNLLWMKDPL 315 (577)
T ss_pred HHHHHhCCcchHHHHHHHHHHHHHHHHHhhhcccchhhceeEecCCccccCChH
Confidence 999999999999999999999999999999999999999999999999998743
No 46
>KOG1117|consensus
Probab=99.94 E-value=3.7e-26 Score=221.00 Aligned_cols=197 Identities=28% Similarity=0.437 Sum_probs=169.5
Q ss_pred CCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhhccCCcCCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCC
Q psy5716 24 RKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASESNISPASGQKNRKFASASTSPRKSSATEATLPPSPK 103 (294)
Q Consensus 24 rk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~~~~~~~~~sP~~~~~~kk~~~~~~k~rk~s~~~~~~~~spk 103 (294)
|+.||-|... |....+|.++..+...|..+|+.++.. + .
T Consensus 676 K~~~l~lve~--grTLYI~g~~rldft~W~~AIekaa~~---------~------------------------------g 714 (1186)
T KOG1117|consen 676 KLDVLVLVEK--GRTLYIQGETRLDFTVWHTAIEKAAGT---------D------------------------------G 714 (1186)
T ss_pred cccceEEEee--ccEEEEecCCcchHHHHHHHHHHHhcC---------C------------------------------c
Confidence 7788999887 899999999999999999999887520 0 0
Q ss_pred ChhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcC
Q psy5716 104 SKTWKGRVAKQFRRIQAGAGSPNSPHPPYPPGSNIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDAS 180 (294)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~ 180 (294)
+ .+.. ....+.-++|.+..|+.+....++ ||||.+|...++..|.+.|.++...
T Consensus 715 t---------~Lqe-------------qqLs~~dIPvIVd~CI~FVTqyGl~cegIYrknG~~~~~~~lLeslr~Dars- 771 (1186)
T KOG1117|consen 715 T---------ALQE-------------QQLSKNDIPVIVDSCIAFVTQYGLGCEGIYRKNGDPLHISRLLESLRKDARS- 771 (1186)
T ss_pred c---------hhhh-------------hhccCCCCcEehHHHHHHHHHhCccceeeeccCCchHHHHHHHHHHhhccce-
Confidence 0 0100 012245678889999999977777 9999999999999999999886553
Q ss_pred ccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHH
Q psy5716 181 VLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVV 260 (294)
Q Consensus 181 ~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~ 260 (294)
+.+- +...-|.+|+++||+|||+|++||+|.++|..|++++..++.+++++.+..+|..||..||.||+.|++||.+|.
T Consensus 772 ~~lr-egeh~vedVtdvLk~FlrdlddpLft~~~~~~w~eaae~~d~~Er~~rY~~lI~~lp~VnRaTLkalIgHLy~Vq 850 (1186)
T KOG1117|consen 772 VKLR-EGEHQVEDVTDVLKRFLRDLDDPLFTKELYPYWIEAAETQDDKERIKRYGALIRSLPGVNRATLKALIGHLYRVQ 850 (1186)
T ss_pred eecc-CCcchHHHHHHHHHHHHHhCCccccchhhhhhHHHhhhccchHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence 3332 233778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCccchhHhhcccccccC
Q psy5716 261 DNSEVNKMEARNLAIMFGPTLVRAG 285 (294)
Q Consensus 261 ~~~~~NkM~~~nLAivf~P~L~~~~ 285 (294)
.+++.|+|+++|||+||||+||...
T Consensus 851 k~s~~N~mnvhNLAlVFa~sLFqTd 875 (1186)
T KOG1117|consen 851 KCSEINQMNVHNLALVFAPSLFQTD 875 (1186)
T ss_pred HHHHhhhhhhHHHHHHhhhhheecC
Confidence 9999999999999999999999874
No 47
>KOG2710|consensus
Probab=99.93 E-value=5.3e-26 Score=210.02 Aligned_cols=145 Identities=31% Similarity=0.436 Sum_probs=130.2
Q ss_pred cccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHH
Q psy5716 140 VPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYP 216 (294)
Q Consensus 140 v~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~ 216 (294)
+.++.|..+.....+ ||||++|+..++++|++.|+++.+...+..+++.+.+|++|++||+|||+||+||||.++|+
T Consensus 96 ~vv~~c~~~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~~~~e~~nvHDvAaLLK~flr~lp~pLLP~~LY~ 175 (412)
T KOG2710|consen 96 RVVAKCGQYLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDVNDWEDFNVHDVAALLKEFLRDLPDPLLPLELYE 175 (412)
T ss_pred HHHHHHHHHHHHcCceeeeeeecCCchHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHHhCCcccCCHHHHH
Confidence 334455555544443 99999999999999999999986654455666779999999999999999999999999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccc-----------CCCccchhHhhccccccc
Q psy5716 217 HFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVN-----------KMEARNLAIMFGPTLVRA 284 (294)
Q Consensus 217 ~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~N-----------kM~~~nLAivf~P~L~~~ 284 (294)
.|+..++....++++..++.++..||..|+++|.+|+.||+.++.|++.| +|++.|||.||+|+|+..
T Consensus 176 ~f~~p~kl~~e~e~~~~l~l~~~llp~~nr~~l~~ll~fL~~~a~~s~d~~~kdg~~~~gnkm~~~nlatIf~P~iL~k 254 (412)
T KOG2710|consen 176 SFINPAKLEPETEQLGVLQLLIYLLPKCNRDTLEVLLGFLSVVASHAEDNIGKDGQEVNGNKMTSENLATIFGPNILYK 254 (412)
T ss_pred HHhhhhcCCcHHHHHHHHHHHHHhcCccchhHHHHHHhhhhhhhcccccccccccccccCcccchhhhhhhhcchhhhc
Confidence 99999999988899999999999999999999999999999999999998 999999999999999994
No 48
>KOG4406|consensus
Probab=99.92 E-value=1.8e-25 Score=202.90 Aligned_cols=154 Identities=34% Similarity=0.538 Sum_probs=133.4
Q ss_pred CCCCCCccccccccccccc---cccCC------------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCc
Q psy5716 131 PYPPGSNIGVPLQHCVSVN---LLCPF------------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWS 189 (294)
Q Consensus 131 ~~~~~~~fgv~L~~~~~~~---~~~p~------------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 189 (294)
.+.+.+.||+||+...+.. +.+|. ||||.|++...+.++.+.+|+|..+++. ...
T Consensus 247 ~pl~t~qFgvpLqf~~~~~~e~~~iPpiv~~tV~~L~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle----~~~ 322 (467)
T KOG4406|consen 247 PPLPTQQFGVPLQFIPEKNPEGESIPPIVRSTVEYLQAHGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLE----VYK 322 (467)
T ss_pred CCCchhhcCccHHHhcccCcccCCCCcHHHHHhhhhhccceecccceeccccCccchHHHHHHhcCCCcccHH----Hhc
Confidence 5667889999998443322 33443 9999999999999999999999987554 235
Q ss_pred chHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhh-CChhHHHHHHHHHHHHHHHHhcccccCC
Q psy5716 190 DVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHE-LPEHHFQTLKYILQHLKRVVDNSEVNKM 268 (294)
Q Consensus 190 dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~-LP~~n~~~L~~L~~~L~~v~~~~~~NkM 268 (294)
|+|..|.+||.|||+||+||++.++|..+..... .+..++...++++++. ||++|+.++++++.||.+|++|+..|+|
T Consensus 323 ~~h~~avllKtF~R~LpePL~t~~~y~~lt~~~~-~~~~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M 401 (467)
T KOG4406|consen 323 DLHAPAVLLKTFLRSLPEPLLTFRLYESLTGFSN-VDKSLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKM 401 (467)
T ss_pred cchhhHHHHHHHHhcCCcccchhhhhhhhhcccc-chHHhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhh
Confidence 6999999999999999999999999998877654 4467788999999997 9999999999999999999999999999
Q ss_pred CccchhHhhcccccccCCCCc
Q psy5716 269 EARNLAIMFGPTLVRAGDDNM 289 (294)
Q Consensus 269 ~~~nLAivf~P~L~~~~~~~~ 289 (294)
++.|||+||||+|+|+.++.+
T Consensus 402 ~~sNLa~vfGpnl~w~~~~s~ 422 (467)
T KOG4406|consen 402 TASNLAVVFGPNLLWAQDESL 422 (467)
T ss_pred ccccceeeecccccccccccc
Confidence 999999999999999986654
No 49
>KOG3564|consensus
Probab=99.92 E-value=4e-25 Score=202.79 Aligned_cols=145 Identities=30% Similarity=0.430 Sum_probs=131.0
Q ss_pred ccccccccccccccccCC---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcc
Q psy5716 137 NIGVPLQHCVSVNLLCPF---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTE 213 (294)
Q Consensus 137 ~fgv~L~~~~~~~~~~p~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~ 213 (294)
.++..+-.|+..+|..++ ||||++|....+++|++.|-+|... ..+. ..|+|++|++||.|||.|.|||||..
T Consensus 361 MIPalVVHCVneIEaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt~-p~~g---~~Dihvic~~lKdFLR~LkePLip~~ 436 (604)
T KOG3564|consen 361 MIPALVVHCVNEIEARGLTEEGLYRVSGCDRTVKRLKEKFLRGKTT-PHLG---NDDIHVICCCLKDFLRNLKEPLIPFR 436 (604)
T ss_pred cchHHHHHHHHHHHHccccccceeeccccHHHHHHHHHHHhccCCC-CccC---CcchhHHHHHHHHHHHhcccccccch
Confidence 344445689988887777 9999999999999999999988775 2222 37999999999999999999999999
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCC
Q psy5716 214 LYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD 286 (294)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~ 286 (294)
...+|+.++.++|.+..+.++...+..||.+||+||.|||-|+++|++ +..|+|+..|||.+|||+++..+-
T Consensus 437 ~~rdf~eAa~~tD~dn~~~aly~aV~ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~v 508 (604)
T KOG3564|consen 437 LRRDFMEAAEITDEDNSILALYQAVGELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHAV 508 (604)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccCC
Confidence 999999999999999999999999999999999999999999999888 889999999999999999999643
No 50
>KOG1453|consensus
Probab=99.90 E-value=5e-24 Score=218.04 Aligned_cols=147 Identities=32% Similarity=0.590 Sum_probs=128.7
Q ss_pred ccccccccccc-cccccCC-----------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHH
Q psy5716 137 NIGVPLQHCVS-VNLLCPF-----------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLL 198 (294)
Q Consensus 137 ~fgv~L~~~~~-~~~~~p~-----------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lL 198 (294)
.||+.|..... ....+|. ||||++|...+++.|...|+.+... +.+. ..|+|+++++|
T Consensus 602 ~fG~~l~~~~~~e~~~vP~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~-v~l~---~~dih~vtsVl 677 (918)
T KOG1453|consen 602 LFGVSLSELARYEPSTVPFILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDAL-VLLS---TPDIHAVTSVL 677 (918)
T ss_pred cccHHHHHhhccCCCCCCHHHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccc-eecC---CCChHHHHHHH
Confidence 78888765444 4455665 9999999999999999999987633 3333 38999999999
Q ss_pred HHHHhhCCCCCCCcchHHHHHHhhcCCCHH------HHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccc
Q psy5716 199 KSFFRRLPDSLLTTELYPHFIQADKIEDPA------TRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARN 272 (294)
Q Consensus 199 K~fLreLP~pLi~~~~~~~~~~~~~~~~~~------~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~n 272 (294)
|+|||+||+|||++..|+.|+.+.+..... +.+..+.+++..||+.|+.+|++|+.||.+|+.+++.|+|++.|
T Consensus 678 K~yLr~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~n 757 (918)
T KOG1453|consen 678 KLYLRKLPEPIIIFNLYDEFLSAAKLPEKDEPSRSTEPLRKLKEVLEQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKN 757 (918)
T ss_pred HHHHHhccccccccchHHHHHhhhccccccccccccccchhHHHHHHhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCC
Confidence 999999999999999999999999883333 48899999999999999999999999999999999999999999
Q ss_pred hhHhhcccccccCCC
Q psy5716 273 LAIMFGPTLVRAGDD 287 (294)
Q Consensus 273 LAivf~P~L~~~~~~ 287 (294)
||+||||+|+|+++.
T Consensus 758 laivF~Ptllr~~d~ 772 (918)
T KOG1453|consen 758 LAIVFAPTLLRPPDG 772 (918)
T ss_pred ccccccCcccCCCCC
Confidence 999999999999764
No 51
>KOG4724|consensus
Probab=99.77 E-value=5.7e-19 Score=168.06 Aligned_cols=151 Identities=24% Similarity=0.287 Sum_probs=136.3
Q ss_pred CCCCCCccccccc-cccccccccCC---------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHH
Q psy5716 131 PYPPGSNIGVPLQ-HCVSVNLLCPF---------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVI 194 (294)
Q Consensus 131 ~~~~~~~fgv~L~-~~~~~~~~~p~---------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~v 194 (294)
...++..||.||. .|+......|. ||||..++...+++|++.+|.|.++.++ ...|+++
T Consensus 76 ~~~~~~Lfg~pl~nic~~~~lp~p~~d~l~~lc~kgp~t~giFr~~anek~~relKe~lnsgv~v~l~-----~~~i~v~ 150 (741)
T KOG4724|consen 76 NTADSFLFGWPLTNICVHFRLPEPDEDFLLLLCCKGPCTRGIFRTIANEKNVRELKETLNSGVDVGLK-----SGEIVVD 150 (741)
T ss_pred CCCCccccCccchhhcccCCCCChHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHhccccccccc-----ccceEEe
Confidence 3467899999997 67666522222 9999999999999999999999887443 2789999
Q ss_pred HHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchh
Q psy5716 195 SSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLA 274 (294)
Q Consensus 195 a~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLA 274 (294)
|.++|.|||.+|.-++..++|+.|..+....+.++++.+++++..+||..|..+|+||...| .|..++++|.|+..|||
T Consensus 151 a~v~kdflr~ip~~~lSsdl~~hw~~~~~~~~~e~~i~~i~r~~d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla 229 (741)
T KOG4724|consen 151 AAVDKDFLRTIPQLTLSSDLNSHWQLQGPENVYEAIISEIERQGDRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLA 229 (741)
T ss_pred ehhhhchhhhchhhhhccccHHHHhhccccccHHHHHHHHHHHHhhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HhhcccccccCCC
Q psy5716 275 IMFGPTLVRAGDD 287 (294)
Q Consensus 275 ivf~P~L~~~~~~ 287 (294)
+|.+|++++....
T Consensus 230 ~cv~p~~l~~~~~ 242 (741)
T KOG4724|consen 230 QCVNPIKLKVLTR 242 (741)
T ss_pred HHhcchhcccccc
Confidence 9999999998543
No 52
>KOG1452|consensus
Probab=99.77 E-value=4.2e-19 Score=156.29 Aligned_cols=152 Identities=21% Similarity=0.232 Sum_probs=126.8
Q ss_pred CCCccccccccccccc-cccC--------------C---ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHH
Q psy5716 134 PGSNIGVPLQHCVSVN-LLCP--------------F---LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVIS 195 (294)
Q Consensus 134 ~~~~fgv~L~~~~~~~-~~~p--------------~---GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va 195 (294)
-+++||+.|+..+... +.-| . |+|+++|+..+-+-|++.|+..... +.+.-+..-|+++|+
T Consensus 181 lrgvfG~~L~~lV~RE~~~~PIvlrR~~~EiEkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~-~el~~E~iPD~nvIt 259 (442)
T KOG1452|consen 181 LRGVFGISLSRLVQREPESPPIVLRRLYAEIEKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRD-FELGAESIPDYNVIT 259 (442)
T ss_pred cccccchhhHhHhhcCCCCCchHHHHHHHHHHhcccccccceeeechhhHHHHHHHHhccCCcc-cccccccCCCcceee
Confidence 3568999888766655 2223 2 9999999999999999999875433 444433447889999
Q ss_pred HHHHHHHhhCCCCCCCcchHHHHHHhhcC---CCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccc
Q psy5716 196 SLLKSFFRRLPDSLLTTELYPHFIQADKI---EDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARN 272 (294)
Q Consensus 196 ~lLK~fLreLP~pLi~~~~~~~~~~~~~~---~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~n 272 (294)
+++|.||||||||||+...|+...+++.. .|.+...+.+-.+|..|+.+++.+|..+++||.-|..+++.|+|++..
T Consensus 260 g~~kD~lrElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~~~ 339 (442)
T KOG1452|consen 260 GDSKDELRELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLAIIDCLERELSKQLNVCLDHLSTVLCSSPHNGLTPTR 339 (442)
T ss_pred cccHhHHHhCCCccccchhhhhhhhhhhhcCCCCccccHHHHHHHHHHHHHHhhhhHhHHHhhhhHheecCCcCCcCHHH
Confidence 99999999999999999999888877553 456667788889999999999999999999999999999999999999
Q ss_pred hhHhhcccccccCC
Q psy5716 273 LAIMFGPTLVRAGD 286 (294)
Q Consensus 273 LAivf~P~L~~~~~ 286 (294)
||.||||.||-+.+
T Consensus 340 Ls~i~~P~L~~~~~ 353 (442)
T KOG1452|consen 340 LSLIFAPLLFFCLD 353 (442)
T ss_pred HHHHhhhhHHHhhc
Confidence 99999999997743
No 53
>KOG4271|consensus
Probab=99.76 E-value=4.7e-19 Score=173.57 Aligned_cols=146 Identities=27% Similarity=0.426 Sum_probs=131.7
Q ss_pred CCCccccccccccccccccCC-----------------ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHH
Q psy5716 134 PGSNIGVPLQHCVSVNLLCPF-----------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISS 196 (294)
Q Consensus 134 ~~~~fgv~L~~~~~~~~~~p~-----------------GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~ 196 (294)
..+.||.|+..|+.....+|. ||||++|+.....+++..|.+....++...| ..+|++|+
T Consensus 914 ~s~~~~~~l~~~~t~~k~ip~~~ekc~sfiedtg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~d---~~v~~vag 990 (1100)
T KOG4271|consen 914 ESNYFLTPLQDAVTSEKPIPIFLEKCKSFIEDTGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSMD---TTVNVVAG 990 (1100)
T ss_pred hhhccCCcccccccCCcccchHHHHHHHHHHhccchhhhheecCCCCccHHHHHHHHHhhccccccccc---cccccccC
Confidence 456888888888887777776 9999999999999999999885443333222 67999999
Q ss_pred HHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHh
Q psy5716 197 LLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIM 276 (294)
Q Consensus 197 lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAiv 276 (294)
.+|.||.+||+||+|+.+++.+.++..+.|...++..+++.+..||+.|+.+++|++.||.+|+....+|.||..||.||
T Consensus 991 Alksffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~~~a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~ 1070 (1100)
T KOG4271|consen 991 ALKSFFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLREASAKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSIC 1070 (1100)
T ss_pred cchhhhhhCCCcccCccCCcchhhhhhcccchhhccchhhHhhhcCchHHHHHHHHHHHHhhhccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccc
Q psy5716 277 FGPTLV 282 (294)
Q Consensus 277 f~P~L~ 282 (294)
|++.|+
T Consensus 1071 ~~~~~~ 1076 (1100)
T KOG4271|consen 1071 FPTLLM 1076 (1100)
T ss_pred ccchHH
Confidence 999886
No 54
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.67 E-value=1.7e-16 Score=134.74 Aligned_cols=141 Identities=21% Similarity=0.218 Sum_probs=111.7
Q ss_pred cccccccccCC---ce---eecCCCHHHHHHH-HHHHhcCCCcCccCCC-----CCCcchHHHHHHHHHHHhhCCCCCCC
Q psy5716 144 HCVSVNLLCPF---LF---PRVPGNTAAVSSL-TEAVNKGLDASVLEQD-----PRWSDVNVISSLLKSFFRRLPDSLLT 211 (294)
Q Consensus 144 ~~~~~~~~~p~---GI---fR~~g~~~~i~~l-~~~~~~~~~~~~~~~~-----~~~~dv~~va~lLK~fLreLP~pLi~ 211 (294)
.|.+..+..+. +| ||.+++...++.+ +..|+.+... ..... ....|+|+++++||.|+|+||+++++
T Consensus 12 ~~t~eLk~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~-~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~~~v~ 90 (198)
T cd04401 12 NITEELKSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQ-LQGTAELLDELRYADPHTLILVLKWIWSRLPGSKVI 90 (198)
T ss_pred HHHHHHHhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCc-ccchHHHHHHHhccChHHHHHHHHHHHHHCCCCccC
Confidence 34444443443 55 9999999999988 4555654222 11111 34489999999999999999999999
Q ss_pred c-chHHHHHHhhcCCCHHHHHHHHHHHHhhC--ChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCCC
Q psy5716 212 T-ELYPHFIQADKIEDPATRMATIKKLVHEL--PEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD 287 (294)
Q Consensus 212 ~-~~~~~~~~~~~~~~~~~~~~~l~~ll~~L--P~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~~ 287 (294)
. +.|..|...-+..+. ...+++.++..+ |+.|+.++..++++|..|+.|+..|+|+..||+++|||.+|..++.
T Consensus 91 ~~~~Y~~F~~~E~~~~~--p~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~~~~ 167 (198)
T cd04401 91 WWEVYEEFKARERRSNY--PADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGKPTG 167 (198)
T ss_pred CHHHHHHHHHHHHhcCC--cHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCCCCc
Confidence 9 999999986433322 234889999988 8999999999999999999999999999999999999999998664
No 55
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.66 E-value=5.5e-16 Score=133.02 Aligned_cols=129 Identities=15% Similarity=0.201 Sum_probs=108.2
Q ss_pred ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcch--------HHHHHHHHHHHhhCCCCCCCcchHHHHHHhhc---
Q psy5716 155 LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDV--------NVISSLLKSFFRRLPDSLLTTELYPHFIQADK--- 223 (294)
Q Consensus 155 GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv--------~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~--- 223 (294)
|+||.++-...+...++.++..++.-....+...++- -+|+.+++.||++|||||+|..+|+.|..++.
T Consensus 61 ~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll~ 140 (235)
T cd04405 61 KLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHDMLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELLG 140 (235)
T ss_pred cccccccCcHHHHHHHHHHHhCCcccccccccccccccccccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHhc
Confidence 9999999999999999999987665111111111221 27999999999999999999999998888766
Q ss_pred CCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcc-------cccCCCccchhHhhcccccccCC
Q psy5716 224 IEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNS-------EVNKMEARNLAIMFGPTLVRAGD 286 (294)
Q Consensus 224 ~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~-------~~NkM~~~nLAivf~P~L~~~~~ 286 (294)
....+.++++++.++..||++||+.|+.|+.||.+|+++. ..|+| |++..|+|+++++.+
T Consensus 141 ~~~~e~aleAlQl~~lLLP~enRe~Lq~LL~fl~~va~~~~~~L~~~~~nR~---~v~~~Fs~~ii~~~~ 207 (235)
T cd04405 141 NGKEEVALEALQLCLLLLPPASRRELRRLLRFMARAAKNDMPRLHKEIENRM---LVKQTFSRAILCSKD 207 (235)
T ss_pred CccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCccccccccchHH---HHHHHhhhHhcCccc
Confidence 4458899999999999999999999999999999999994 25777 999999999999974
No 56
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=99.65 E-value=2.3e-16 Score=124.64 Aligned_cols=54 Identities=41% Similarity=0.660 Sum_probs=45.2
Q ss_pred cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716 6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA 60 (294)
Q Consensus 6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~ 60 (294)
.+|+|.||.|+.|.||+||+|||+|++. ||.||||||.|++||.+||.+|+.++
T Consensus 65 ~~i~L~~a~a~~a~dY~Kr~~VFrL~~~-dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 65 SSISLHHALAEIASDYTKRKNVFRLRTA-DGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp --EE-TT-EEEEETTBTTCSSEEEEE-T-TS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred eEEEecceEEEeCcccccCCeEEEEEeC-CCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 4599999999999999999999999999 99999999999999999999999875
No 57
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.54 E-value=1.5e-14 Score=113.28 Aligned_cols=61 Identities=33% Similarity=0.468 Sum_probs=57.3
Q ss_pred CCcccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhhccC
Q psy5716 4 SCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSA 65 (294)
Q Consensus 4 ~~~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~~~~ 65 (294)
.+.+|+|.+|+|+++.+|+||+|||+|++. +|.+|||||.+.+||+.||.+|+.+++..++
T Consensus 56 ~~~~Isi~~a~~~ia~dy~Kr~~VF~L~~~-~g~~~lfqA~~~ee~~~Wi~~I~~~~~~~s~ 116 (117)
T cd01230 56 LKNAISIHHALATRASDYSKKPHVFRLRTA-DWREFLFQTSSLKELQSWIERINVVAAAFSA 116 (117)
T ss_pred ccceEEeccceeEeeccccCCCcEEEEEcC-CCCEEEEECCCHHHHHHHHHHHHHHHHhccC
Confidence 468999999999999999999999999999 9999999999999999999999998876654
No 58
>KOG4370|consensus
Probab=99.27 E-value=5.1e-12 Score=115.52 Aligned_cols=94 Identities=26% Similarity=0.362 Sum_probs=90.2
Q ss_pred cchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCC
Q psy5716 189 SDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKM 268 (294)
Q Consensus 189 ~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM 268 (294)
+.+.+||++||.|||+||++|++.++...|..++.........+.++.++..||.+||.++.+|+-|+..|.+..-.|||
T Consensus 161 l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~efq~llk~Lp~cNyll~swl~lH~d~vi~~e~~~Kl 240 (514)
T KOG4370|consen 161 LTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQNEFQFLLKILPKCNYLLYSWLNLHKDKVIEEEYCLKL 240 (514)
T ss_pred cCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhc
Confidence 78899999999999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred CccchhHhhccccc
Q psy5716 269 EARNLAIMFGPTLV 282 (294)
Q Consensus 269 ~~~nLAivf~P~L~ 282 (294)
+..||+|+.+|++-
T Consensus 241 n~q~i~i~lspt~q 254 (514)
T KOG4370|consen 241 NKQQIFINLSPTEQ 254 (514)
T ss_pred chhheeeecchHHH
Confidence 99999999999863
No 59
>KOG0932|consensus
Probab=99.23 E-value=9.4e-12 Score=117.33 Aligned_cols=75 Identities=29% Similarity=0.449 Sum_probs=64.1
Q ss_pred cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhhccCCcCCCCCCCcccccccccC
Q psy5716 6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASESNISPASGQKNRKFASA 84 (294)
Q Consensus 6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~~~~~~~~~sP~~~~~~kk~~~~ 84 (294)
..|.++||..+.|.||+||.|||+|++. ||.+|||||.+.+||++||..|+-+++..++++ -|+.....+++++.
T Consensus 564 navsvHHALAt~AtdY~KKp~Vf~lrtA-dwrv~LFQaps~eEmqsWi~rIN~vAA~fSaPp---fPaaV~Sqkkf~rP 638 (774)
T KOG0932|consen 564 NAVSVHHALATPATDYSKKPHVFKLRTA-DWRVFLFQAPSQEEMQSWIERINLVAAAFSAPP---FPAAVGSQKKFSRP 638 (774)
T ss_pred hhhhhhhhhcCCCcccccCCceEEEEec-cceeEEEeCCCHHHHHHHHHHHHHHHHhccCCC---Cccccccccccccc
Confidence 4789999999999999999999999999 999999999999999999999999998888765 34443344555543
No 60
>KOG3565|consensus
Probab=99.21 E-value=1.2e-11 Score=121.85 Aligned_cols=150 Identities=23% Similarity=0.307 Sum_probs=130.5
Q ss_pred CCCCccccccccccccccccCC---ceee-cCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCC
Q psy5716 133 PPGSNIGVPLQHCVSVNLLCPF---LFPR-VPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDS 208 (294)
Q Consensus 133 ~~~~~fgv~L~~~~~~~~~~p~---GIfR-~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~p 208 (294)
..+...+..++.|...++.... |||| ++|....+..++..+..|........+ .+... |+++|.|+|.|.+|
T Consensus 213 ~~~q~iP~i~d~~~~l~~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~---~~~dS-a~vlk~~~~~le~P 288 (640)
T KOG3565|consen 213 YYFQFIPLIVDSLQRLEERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLND---PDLDS-AGVLKLYFRGLEEP 288 (640)
T ss_pred CCcccccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccC---cchhH-HHHHHHHHccCCCc
Confidence 3466777778888888866665 9999 999999999999999888433333332 56666 99999999999999
Q ss_pred -CCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhHhhcccccccCC
Q psy5716 209 -LLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD 286 (294)
Q Consensus 209 -Li~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAivf~P~L~~~~~ 286 (294)
.|+++.|..++++....+..++...++.++..+|..+..++.++..|+.+.++.++.|.|++.|+|+||||+++-.++
T Consensus 289 ~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~~e 367 (640)
T KOG3565|consen 289 ADFPFEDFGQPHDCAARDNLLSRALHVRKLLKSLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPVPE 367 (640)
T ss_pred ccCccccccchhhhhhhcCchhhhhhhhhhhhccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccCcc
Confidence 999999999999998888888889999999999999999999999999999999999999999999999999976644
No 61
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.13 E-value=1e-10 Score=89.92 Aligned_cols=53 Identities=43% Similarity=0.711 Sum_probs=50.0
Q ss_pred CcccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHH
Q psy5716 5 CERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT 58 (294)
Q Consensus 5 ~~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~ 58 (294)
..+|+|.+|.++++.+|.||+|||+|+++ +|.+|+|||+++++|.+|+.+|+.
T Consensus 51 ~~~i~l~~~~i~~~~~~~k~~~~F~l~~~-~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 51 EPPVDLTGAQCEVASDYTKKKHVFRLRLP-DGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred CCcEeccCCEEEecCCcccCceEEEEEec-CCCEEEEECCCHHHHHHHHHHHhc
Confidence 35899999999999999999999999998 999999999999999999999975
No 62
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=98.14 E-value=4.2e-06 Score=63.17 Aligned_cols=51 Identities=20% Similarity=0.347 Sum_probs=43.9
Q ss_pred cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHH
Q psy5716 6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT 58 (294)
Q Consensus 6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~ 58 (294)
..|+|.++.+..+.+ .+|+++|+|.+. +...|+|+|++++++.+|+.+|+.
T Consensus 45 ~~I~L~~~~v~~~~~-~~k~~~F~I~~~-~~~~~~f~a~s~~e~~~Wi~ai~~ 95 (96)
T cd01260 45 GLIFLSGFTIESAKE-VKKKYAFKVCHP-VYKSFYFAAETLDDLSQWVNHLIT 95 (96)
T ss_pred eEEEccCCEEEEchh-cCCceEEEECCC-CCcEEEEEeCCHHHHHHHHHHHHh
Confidence 468999998887654 348999999987 668999999999999999999975
No 63
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.05 E-value=8.8e-06 Score=60.62 Aligned_cols=51 Identities=24% Similarity=0.384 Sum_probs=44.3
Q ss_pred cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHH
Q psy5716 6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT 58 (294)
Q Consensus 6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~ 58 (294)
..|+|.++.+....+..+++++|.|.+. + ..|+|+|++++++.+|+.+|+.
T Consensus 43 ~~i~l~~~~v~~~~~~~~~~~~f~i~~~-~-~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 43 KEIDLRRCTVRHNGKQPDRRFCFEVISP-T-KTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred eEEeccceEEecCccccCCceEEEEEcC-C-cEEEEECCCHHHHHHHHHHHhc
Confidence 4688988888877666568999999998 5 8899999999999999999975
No 64
>KOG4724|consensus
Probab=98.04 E-value=3.1e-06 Score=82.07 Aligned_cols=147 Identities=17% Similarity=0.139 Sum_probs=111.0
Q ss_pred CCccccccccccccccccC--C---------------ceeecCCCHHHHHHH----HHHHhcCCCcCccCCCCCCcchHH
Q psy5716 135 GSNIGVPLQHCVSVNLLCP--F---------------LFPRVPGNTAAVSSL----TEAVNKGLDASVLEQDPRWSDVNV 193 (294)
Q Consensus 135 ~~~fgv~L~~~~~~~~~~p--~---------------GIfR~~g~~~~i~~l----~~~~~~~~~~~~~~~~~~~~dv~~ 193 (294)
...||+||+.........| . ++||..-..+-+.+- ...+... ....+...+.+|.
T Consensus 414 kv~fdaPlS~~c~d~gk~prPlq~~~tll~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~----gr~vdv~sspv~t 489 (741)
T KOG4724|consen 414 KVPFDAPLSVFCADQGKTPRPLQIQSTLLKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSD----GRPVDVPSSPVHT 489 (741)
T ss_pred hCcCCCchhhcccccCCCCCChhhhhHHHHhcCCCCCccCCCccchhhhhhcccccchhhhcc----CCcccCCCCCchH
Confidence 4679999985544442222 2 889884433332221 1112221 1122233368999
Q ss_pred HHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHH--------HHhhCChhHHHHHHHHHHHHHHHHhcccc
Q psy5716 194 ISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKK--------LVHELPEHHFQTLKYILQHLKRVVDNSEV 265 (294)
Q Consensus 194 va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~--------ll~~LP~~n~~~L~~L~~~L~~v~~~~~~ 265 (294)
+++++|.|+|++|..++..+.+.++..+.-..+++++.++|+. .....|..++.+....+.-...+..+++.
T Consensus 490 aasv~KdfnRKtpRgi~sr~ihke~~ea~~lq~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~nse~ 569 (741)
T KOG4724|consen 490 AASVHKDFNRKTPRGIPSREIHKESMEATFLQHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSENSEE 569 (741)
T ss_pred HHHHHHHhhhhcCCCccchHHHHHhhhhhhccchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceeccccccc
Confidence 9999999999999999999999999999999999999999999 88889999888877777777788899999
Q ss_pred cCCCccchhHhhcccccccC
Q psy5716 266 NKMEARNLAIMFGPTLVRAG 285 (294)
Q Consensus 266 NkM~~~nLAivf~P~L~~~~ 285 (294)
+.|+..|++.|..|++..-.
T Consensus 570 ~s~dsSn~~~csrpn~~tvd 589 (741)
T KOG4724|consen 570 TSNDSSNPGFCSRPNALTVD 589 (741)
T ss_pred ccccccccCCCCCccccchh
Confidence 99999999999999887653
No 65
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=97.97 E-value=2.9e-05 Score=58.08 Aligned_cols=55 Identities=20% Similarity=0.354 Sum_probs=48.4
Q ss_pred CcccccCCceeeecccC-----CcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716 5 CERIDIGHNCVEVACDY-----TKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA 60 (294)
Q Consensus 5 ~~~~~l~~~~~~~a~~~-----~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~ 60 (294)
...|+|.++.+....+. .+++|+|.|.+. ++..|+|+|++++++..|+.+|+.+.
T Consensus 44 ~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~-~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 44 KGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTP-NGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp SEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEET-TSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred eEEEEecCceEEEcCccccccccCCCcEEEEEeC-CCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 34688999988877666 588999999999 87899999999999999999999864
No 66
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.95 E-value=2.3e-05 Score=59.15 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=41.6
Q ss_pred CcccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHH
Q psy5716 5 CERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTH 59 (294)
Q Consensus 5 ~~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~ 59 (294)
...|+|.+|.+....+. ++++|.|.+. +..|.|+|+|++||.+||.+|+..
T Consensus 43 ~G~I~L~~~~~~~~~~~--~~~~F~i~t~--~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 43 LGRVDLSGAAFTYDPRE--EKGRFEIHSN--NEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred cceEECCccEEEcCCCC--CCCEEEEEcC--CcEEEEECCCHHHHHHHHHHHHhh
Confidence 35689999877653322 5899999886 688999999999999999999864
No 67
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=97.88 E-value=2.8e-05 Score=59.26 Aligned_cols=53 Identities=21% Similarity=0.266 Sum_probs=43.0
Q ss_pred cccccCCceeeecccC---CcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716 6 ERIDIGHNCVEVACDY---TKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA 60 (294)
Q Consensus 6 ~~~~l~~~~~~~a~~~---~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~ 60 (294)
..|+|.++.++...+- .+++|+|.|.+. ...|.|||+|++|+.+||.+|+...
T Consensus 43 ~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t~--~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 43 GVINLSTARVEHSEDQAAMVKGPNTFAVCTK--HRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred eEEEecccEEEEccchhhhcCCCcEEEEECC--CCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 4578888877765443 347899999887 5789999999999999999997653
No 68
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=97.87 E-value=6.5e-05 Score=71.11 Aligned_cols=99 Identities=19% Similarity=0.269 Sum_probs=82.5
Q ss_pred CcchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHh-hCC-hhHHHHHHHHHHHHHHHHhcccc
Q psy5716 188 WSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVH-ELP-EHHFQTLKYILQHLKRVVDNSEV 265 (294)
Q Consensus 188 ~~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~LP-~~n~~~L~~L~~~L~~v~~~~~~ 265 (294)
..++|+++++||-.+..||..+++.+.|..|...-+..+- ...++..++. .|| +.|..++.-++++|..|+.|+..
T Consensus 70 ~~~~~~L~~~LKw~w~RLp~gvVgW~~Y~~Fk~~E~~~~y--p~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~ 147 (420)
T PF08101_consen 70 FTSPHTLISVLKWIWSRLPGGVVGWDSYEEFKRREREAGY--PRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKK 147 (420)
T ss_pred cCCchHHHHHHHHHHHHcCCCccccHHHHHHHHHHhhcCC--ChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcc
Confidence 3789999999999999999999999999999876443322 2356666664 564 66678999999999999999999
Q ss_pred cCCCccchhHhhcccccccCCCC
Q psy5716 266 NKMEARNLAIMFGPTLVRAGDDN 288 (294)
Q Consensus 266 NkM~~~nLAivf~P~L~~~~~~~ 288 (294)
|+|+..-|+-.+|+-.|...+..
T Consensus 148 NglsgrKlsrm~g~WaF~~~~~~ 170 (420)
T PF08101_consen 148 NGLSGRKLSRMAGIWAFGHPDFG 170 (420)
T ss_pred cCCCHHHHHHHHHHHHCCCCCcc
Confidence 99999999999999998876543
No 69
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=97.87 E-value=3.4e-05 Score=58.90 Aligned_cols=51 Identities=14% Similarity=0.194 Sum_probs=42.7
Q ss_pred cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHH
Q psy5716 6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT 58 (294)
Q Consensus 6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~ 58 (294)
..|+|.+|..-.-..-.+++|+|.|.+. + ..|+|+|+++.|+.+|+.+|.+
T Consensus 50 ~vI~L~~c~~v~~~~d~k~~~~f~i~t~-d-r~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 50 RVIPLESCFNINKRADAKHRHLIALYTR-D-EYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEEEccceEEEeeccccccCeEEEEEeC-C-ceEEEEeCCHHHHHHHHHHHhh
Confidence 4789999986544444667899999998 5 6999999999999999999965
No 70
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.85 E-value=3.8e-05 Score=58.51 Aligned_cols=52 Identities=17% Similarity=0.298 Sum_probs=43.1
Q ss_pred cccccCCceeeecccCCcC----CCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHH
Q psy5716 6 ERIDIGHNCVEVACDYTKR----KHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTH 59 (294)
Q Consensus 6 ~~~~l~~~~~~~a~~~~kr----k~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~ 59 (294)
..|||..|..-...+..+| .|.|++.+. ...|+|+|+|+.++++||++|+.+
T Consensus 45 g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp--~rt~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 45 CSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTA--DKTYILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred ceEEcccceEEeeccccccccccCcEEEEEcC--CceEEEEeCCHHHHHHHHHHHHhh
Confidence 6899999997655443333 599999998 589999999999999999999864
No 71
>KOG0517|consensus
Probab=97.82 E-value=2.2e-06 Score=90.50 Aligned_cols=59 Identities=36% Similarity=0.577 Sum_probs=54.8
Q ss_pred CCCCcccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716 2 TGSCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI 61 (294)
Q Consensus 2 ~~~~~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~ 61 (294)
+++++++++..|.++++.||.||||||.|... +|.+|+|||.++++|..|+.++....+
T Consensus 2352 ~r~e~~lel~~a~i~~a~dy~kkk~v~~l~~~-~gae~llq~k~ee~m~sWL~~~a~~~~ 2410 (2473)
T KOG0517|consen 2352 VRGEPPLELDMAAIEVASDYHKKKHVFLLQLP-PGAEHLLQAKDEEEMESWLRALAVKRA 2410 (2473)
T ss_pred ccCCcchhcchhHHHHHHHHHHHhHhhhhcCC-chHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999988 999999999999999999988876543
No 72
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.73 E-value=7.1e-05 Score=55.28 Aligned_cols=49 Identities=12% Similarity=0.271 Sum_probs=40.7
Q ss_pred cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHH
Q psy5716 6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT 58 (294)
Q Consensus 6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~ 58 (294)
..|+|.+|.+... ..++|+|+|.+. +|..|+|+|++++|+.+|+.+|+.
T Consensus 42 ~~i~l~~~~~~~~---~~~~~~F~i~~~-~~~~~~~~a~s~~e~~~Wi~al~~ 90 (91)
T cd01246 42 GTILLSGAVISED---DSDDKCFTIDTG-GDKTLHLRANSEEERQRWVDALEL 90 (91)
T ss_pred EEEEeceEEEEEC---CCCCcEEEEEcC-CCCEEEEECCCHHHHHHHHHHHHh
Confidence 3477888776553 234899999998 889999999999999999999975
No 73
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=97.70 E-value=9.6e-05 Score=55.35 Aligned_cols=50 Identities=12% Similarity=0.195 Sum_probs=41.4
Q ss_pred CcccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHH
Q psy5716 5 CERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT 58 (294)
Q Consensus 5 ~~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~ 58 (294)
...|+|.+|.+... ..+++.|.|.+. ++..|.|+|+|+.|+.+|+.+|+.
T Consensus 41 ~G~I~L~~~~i~~~---~~~~~~F~i~~~-~~r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 41 RGSIFLKKAIIAAH---EFDENRFDISVN-ENVVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred cEEEECcccEEEcC---CCCCCEEEEEeC-CCeEEEEEeCCHHHHHHHHHHHhh
Confidence 45688998876642 234799999887 679999999999999999999985
No 74
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.66 E-value=0.00014 Score=57.75 Aligned_cols=53 Identities=19% Similarity=0.354 Sum_probs=43.7
Q ss_pred cccccCCceeeecccCCcCCCeEEEEecCCC--------------------eeEEEecCChhHHHHHHHHHHHHH
Q psy5716 6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSN--------------------TELLLQADDTLTMAHWIRDLQTHA 60 (294)
Q Consensus 6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g--------------------~e~l~qa~~~~~~~~W~~~i~~~~ 60 (294)
..|+|.++.+....+ .+|+++|+|... ++ ..|+|+|++++|+.+|+.+|+.+.
T Consensus 41 g~I~L~~~~v~~~~~-~~~~~~F~i~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~ 113 (125)
T cd01252 41 GIIPLENVSIREVED-PSKPFCFELFSP-SDKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASI 113 (125)
T ss_pred EEEECCCcEEEEccc-CCCCeeEEEECC-ccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHH
Confidence 357888888776543 568899999887 54 578899999999999999999876
No 75
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=97.66 E-value=0.0001 Score=56.82 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=40.3
Q ss_pred cccccCCcee-eecccCC------cCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHH
Q psy5716 6 ERIDIGHNCV-EVACDYT------KRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTH 59 (294)
Q Consensus 6 ~~~~l~~~~~-~~a~~~~------krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~ 59 (294)
-.|+|.++.+ +.+.+.. +++++|+|.+. + ..|.++|++++|+++||.+|+.+
T Consensus 48 G~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~-~-r~~yl~A~s~~er~~WI~ai~~~ 106 (106)
T cd01238 48 GSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHD-E-GTLYVFAPTEELRKRWIKALKQV 106 (106)
T ss_pred eeEECCcceEEEEecCCcCcccccccCccEEEEeC-C-CeEEEEcCCHHHHHHHHHHHHhC
Confidence 4688888754 3444443 46899999997 4 56778999999999999999863
No 76
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=97.63 E-value=0.0001 Score=55.20 Aligned_cols=40 Identities=15% Similarity=0.388 Sum_probs=36.8
Q ss_pred cccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHH
Q psy5716 18 ACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT 58 (294)
Q Consensus 18 a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~ 58 (294)
+-++-++.|+|-|+.. ++.||+|.|.|+.+|+.|++.|+.
T Consensus 67 ~LEmPD~~nTFvLK~~-~~~eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 67 RLEMPDNLYTFVLKVD-DNTDIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred cccccCcccEEEEEec-CCceEEEEcCCHHHHHHHHHHHhc
Confidence 4568889999999999 999999999999999999999974
No 77
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.51 E-value=0.00035 Score=50.70 Aligned_cols=54 Identities=28% Similarity=0.411 Sum_probs=46.7
Q ss_pred CCcccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHH
Q psy5716 4 SCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT 58 (294)
Q Consensus 4 ~~~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~ 58 (294)
....|+|.++.+....+..++.++|.|.+. ++..|+|+++++.|+..|+.+|+.
T Consensus 42 ~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~-~~~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 42 PKGSIPLSGAEVEESPDDSGRKNCFEIRTP-DGRSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred CcceEEcCCCEEEECCCcCCCCcEEEEecC-CCcEEEEEeCCHHHHHHHHHHHhc
Confidence 345688888888877776678999999998 669999999999999999999975
No 78
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.51 E-value=0.00023 Score=54.01 Aligned_cols=51 Identities=10% Similarity=0.166 Sum_probs=40.5
Q ss_pred cccccCCceeeec--ccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHH
Q psy5716 6 ERIDIGHNCVEVA--CDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT 58 (294)
Q Consensus 6 ~~~~l~~~~~~~a--~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~ 58 (294)
..|+|..+.+..- .+-.+++|+|++.+. + ..|.+||+++.|+.+||.+|+.
T Consensus 45 g~I~L~~i~~ve~v~~~~~~~~~~fqivt~-~-r~~yi~a~s~~E~~~Wi~al~k 97 (98)
T cd01244 45 ALIKLAAIKGTEPLSDKSFVNVDIITIVCE-D-DTMQLQFEAPVEATDWLNALEK 97 (98)
T ss_pred eeEEccceEEEEEcCCcccCCCceEEEEeC-C-CeEEEECCCHHHHHHHHHHHhc
Confidence 4677877777643 233456899999998 5 5899999999999999999975
No 79
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=97.50 E-value=0.00027 Score=54.17 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=31.7
Q ss_pred CCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716 25 KHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI 61 (294)
Q Consensus 25 k~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~ 61 (294)
.+.|.|.+. +..|+|+|+++.|+.+||.+|+.+..
T Consensus 67 ~~~F~i~t~--~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 67 WYGVTLVTP--ERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred cceEEEEeC--CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 359999997 79999999999999999999999863
No 80
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.47 E-value=0.00041 Score=52.78 Aligned_cols=53 Identities=11% Similarity=0.148 Sum_probs=45.1
Q ss_pred cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716 6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA 60 (294)
Q Consensus 6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~ 60 (294)
..++|.+..++-..+-.+.+|.|+|.+. ...|.++|.+++|+.+|+.+|++++
T Consensus 45 ~~i~L~~~~V~~~~~~~~~~~~F~I~~~--~ks~~l~A~s~~Ek~~Wi~~i~~aI 97 (99)
T cd01220 45 GHLPLRGMLTEESEHEWGVPHCFTIFGG--QCAITVAASTRAEKEKWLADLSKAI 97 (99)
T ss_pred EEEEcCceEEeeccCCcCCceeEEEEcC--CeEEEEECCCHHHHHHHHHHHHHHh
Confidence 3578888888866664466899999976 7889999999999999999999876
No 81
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.35 E-value=0.00049 Score=52.80 Aligned_cols=51 Identities=22% Similarity=0.351 Sum_probs=42.1
Q ss_pred cccccCCceeee-cccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHH
Q psy5716 6 ERIDIGHNCVEV-ACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT 58 (294)
Q Consensus 6 ~~~~l~~~~~~~-a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~ 58 (294)
..|||..|..-. +.+.+.++|.|.|.+. ...|+|.|++++|+++|+.+|+.
T Consensus 51 G~IdL~~~~~V~~~~~~~~~~~~f~I~tp--~R~f~l~Aete~E~~~Wi~~l~~ 102 (104)
T cd01236 51 GTIDMNQCTDVVDAEARTGQKFSICILTP--DKEHFIKAETKEEISWWLNMLMV 102 (104)
T ss_pred eEEEccceEEEeecccccCCccEEEEECC--CceEEEEeCCHHHHHHHHHHHHh
Confidence 468898877655 3455667899999998 68999999999999999999963
No 82
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=97.33 E-value=0.0009 Score=48.98 Aligned_cols=55 Identities=24% Similarity=0.353 Sum_probs=46.0
Q ss_pred CcccccCCceeeecccCC--cCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716 5 CERIDIGHNCVEVACDYT--KRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA 60 (294)
Q Consensus 5 ~~~~~l~~~~~~~a~~~~--krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~ 60 (294)
...++|.++.+....+.. ..+++|.|... ++..|+|+++++.++..|+.+|+.++
T Consensus 45 ~~~i~l~~~~v~~~~~~~~~~~~~~f~l~~~-~~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 45 KGSIDLSGITVREAPDPDSAKKPHCFEIKTA-DRRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred ceEEECCcCEEEeCCCCccCCCceEEEEEec-CCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 456788888777665553 67899999998 77799999999999999999998764
No 83
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=97.33 E-value=0.00054 Score=52.88 Aligned_cols=53 Identities=13% Similarity=0.060 Sum_probs=40.0
Q ss_pred CcccccCCceeeec-----ccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHH
Q psy5716 5 CERIDIGHNCVEVA-----CDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTH 59 (294)
Q Consensus 5 ~~~~~l~~~~~~~a-----~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~ 59 (294)
...|||..|..... ....+++++|++.+. ...|+|.|++++||.+|+.+|+.+
T Consensus 50 ~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i~t~--~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 50 EFVIDLESCSQVDPGLLCTAGNCIFGYGFDIETI--VRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred ceEEECCccEEEcccccccccCcccceEEEEEeC--CccEEEEECCHHHHHHHHHHHHhh
Confidence 35688888765422 122345678999976 679999999999999999999763
No 84
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.31 E-value=0.0007 Score=51.63 Aligned_cols=51 Identities=25% Similarity=0.305 Sum_probs=42.6
Q ss_pred ccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716 7 RIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA 60 (294)
Q Consensus 7 ~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~ 60 (294)
.++|.++.+.-. +-..++|.|.|.+. + ..|.++|++++|+.+|+.+|+.++
T Consensus 49 ~i~l~~~~v~~~-~~~~~~~~F~I~~~-~-rsf~l~A~s~eEk~~W~~ai~~~i 99 (101)
T cd01219 49 RIDVSGMQVCEG-DNLERPHSFLVSGK-Q-RCLELQARTQKEKNDWVQAIFSII 99 (101)
T ss_pred EEecccEEEEeC-CCCCcCceEEEecC-C-cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 478888777643 23457999999988 4 899999999999999999999876
No 85
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.25 E-value=0.00073 Score=51.26 Aligned_cols=50 Identities=18% Similarity=0.212 Sum_probs=40.2
Q ss_pred ccccCCceeeecccC-CcCCCeEEEEecCCC-eeEEEecCChhHHHHHHHHHHH
Q psy5716 7 RIDIGHNCVEVACDY-TKRKHVLRLSSPSSN-TELLLQADDTLTMAHWIRDLQT 58 (294)
Q Consensus 7 ~~~l~~~~~~~a~~~-~krk~vf~l~~~~~g-~e~l~qa~~~~~~~~W~~~i~~ 58 (294)
-|+|..|.+....|+ ..|+|+|+|.+. ++ +.|.+.|.+ +|+.+||.+|+.
T Consensus 46 li~l~~~~V~~v~ds~~~r~~cFel~~~-~~~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 46 LIDLSDAYLYPVHDSLFGRPNCFQIVER-ALPTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred eeeccccEEEEccccccCCCeEEEEecC-CCCeEEEEeCCH-HHHHHHHHHHhc
Confidence 367888866654444 578999999998 55 789888888 999999999975
No 86
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.19 E-value=0.0011 Score=50.61 Aligned_cols=58 Identities=19% Similarity=0.326 Sum_probs=45.4
Q ss_pred CCCcccccCCceeeecccC--CcCCCeEEEEecC-CC-eeEEEecCChhHHHHHHHHHHHHH
Q psy5716 3 GSCERIDIGHNCVEVACDY--TKRKHVLRLSSPS-SN-TELLLQADDTLTMAHWIRDLQTHA 60 (294)
Q Consensus 3 ~~~~~~~l~~~~~~~a~~~--~krk~vf~l~~~~-~g-~e~l~qa~~~~~~~~W~~~i~~~~ 60 (294)
.+++.++|..+.|++..|. .++|+.|++.+++ +| .+|.|.++|++++..|+++.+.++
T Consensus 42 ~~~p~i~lnl~gcev~~dv~~~~~kf~I~l~~ps~~~~r~y~l~cdsEeqya~Wmaa~rlas 103 (106)
T cd01237 42 NGAPIGQLNLKGCEVTPDVNVAQQKFHIKLLIPTAEGMNEVWLRCDNEKQYAKWMAACRLAS 103 (106)
T ss_pred CCCCeEEEecCceEEcccccccccceEEEEecCCccCCeEEEEECCCHHHHHHHHHHHHHhh
Confidence 3466777777777776654 7778999998651 23 689999999999999999998764
No 87
>KOG1453|consensus
Probab=97.18 E-value=0.0003 Score=73.29 Aligned_cols=132 Identities=26% Similarity=0.315 Sum_probs=106.6
Q ss_pred ceeecCCCHHHHHHHHHHHhcCCCc--CccCCCCCCcchHHHHHHHHHHHhhC--CCCCCCcchHHHHH-----------
Q psy5716 155 LFPRVPGNTAAVSSLTEAVNKGLDA--SVLEQDPRWSDVNVISSLLKSFFRRL--PDSLLTTELYPHFI----------- 219 (294)
Q Consensus 155 GIfR~~g~~~~i~~l~~~~~~~~~~--~~~~~~~~~~dv~~va~lLK~fLreL--P~pLi~~~~~~~~~----------- 219 (294)
|+||.+|+...+...+..++..... ++......+.++...++.++.|+|.+ |.+....+.|..|+
T Consensus 501 ~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~sg~~~~~~r~~~~P~~c~~c~~~~~~~~~~c~~c~~~c 580 (918)
T KOG1453|consen 501 GLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNLHSGALKHYLRSLRKPAPCRTCETYSWFMELECELCRLVC 580 (918)
T ss_pred cccccCCccccccchhhccCccccchhccCCCccccccchhccCcchhhhhcccCCcccccccccchhhhcccceeeeec
Confidence 9999999999999999998875422 22222222466777888999999999 99999999999888
Q ss_pred -----HhhcCCCHHHHH-------HHHHHHHh----hCChhHHHHHHHHHHHHHHHHhccccc-CCCc-cchhHhhcc--
Q psy5716 220 -----QADKIEDPATRM-------ATIKKLVH----ELPEHHFQTLKYILQHLKRVVDNSEVN-KMEA-RNLAIMFGP-- 279 (294)
Q Consensus 220 -----~~~~~~~~~~~~-------~~l~~ll~----~LP~~n~~~L~~L~~~L~~v~~~~~~N-kM~~-~nLAivf~P-- 279 (294)
....+....+++ ..+..+.. .+|.....++.++..|+.++.....+| -|+. +||..+|++
T Consensus 581 hkkc~~~~~~~~~~~~l~~~~~fG~~l~~~~~~e~~~vP~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~ 660 (918)
T KOG1453|consen 581 HKKCLEALKSLCGHERLPGRPLFGVSLSELARYEPSTVPFILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGD 660 (918)
T ss_pred cccchhhccccCccccccccccccHHHHHhhccCCCCCCHHHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCc
Confidence 344445556666 78888888 999999999999999999999999998 7887 999999999
Q ss_pred --cccccCC
Q psy5716 280 --TLVRAGD 286 (294)
Q Consensus 280 --~L~~~~~ 286 (294)
+++...+
T Consensus 661 ~~v~l~~~d 669 (918)
T KOG1453|consen 661 ALVLLSTPD 669 (918)
T ss_pred cceecCCCC
Confidence 5555444
No 88
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=97.02 E-value=0.0018 Score=48.98 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=39.0
Q ss_pred cccccCCceee-ec------ccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHH
Q psy5716 6 ERIDIGHNCVE-VA------CDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTH 59 (294)
Q Consensus 6 ~~~~l~~~~~~-~a------~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~ 59 (294)
..|+|..+..- .. .....+.+.|.+.+. +..|.|+|++++|+.+|+.+|+.+
T Consensus 42 g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t~--~r~~~~~a~s~~e~~~Wi~ai~~~ 100 (101)
T cd01235 42 GCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKTS--KRTYNFLAENINEAQRWKEKIQQC 100 (101)
T ss_pred eEEEcceeEEEeecCCCCCCCCCCCCceEEEEEeC--CceEEEECCCHHHHHHHHHHHHhh
Confidence 35778775432 21 123356788998775 789999999999999999999875
No 89
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=96.93 E-value=0.0025 Score=46.41 Aligned_cols=51 Identities=20% Similarity=0.316 Sum_probs=42.9
Q ss_pred ccccCCceeeecccCCcCCCeEEEEecCC--CeeEEEecCChhHHHHHHHHHHH
Q psy5716 7 RIDIGHNCVEVACDYTKRKHVLRLSSPSS--NTELLLQADDTLTMAHWIRDLQT 58 (294)
Q Consensus 7 ~~~l~~~~~~~a~~~~krk~vf~l~~~~~--g~e~l~qa~~~~~~~~W~~~i~~ 58 (294)
.+++.+..+....+-..++++|.+.+. + +..+.|++++..++..|+.+|+.
T Consensus 46 ~~~l~~~~v~~~~~~~~~~~~F~i~~~-~~~~~~~~~~~~~~~~~~~W~~al~~ 98 (99)
T cd00900 46 SIPLSEISVEEDPDGSDDPNCFAIVTK-DRGRRVFVFQADSEEEAQEWVEALQQ 98 (99)
T ss_pred EEEccceEEEECCCCCCCCceEEEECC-CCCcEEEEEEcCCHHHHHHHHHHHhc
Confidence 477777776665544467899999998 6 89999999999999999999975
No 90
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.93 E-value=0.0033 Score=48.20 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=44.5
Q ss_pred ccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716 7 RIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI 61 (294)
Q Consensus 7 ~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~ 61 (294)
-++|.++.+.-..|-..-+|.|+|.+. ...|.++|+++.|..+|+.+|++++.
T Consensus 47 ~i~L~~~~v~~~~d~~~~~n~f~I~~~--~kSf~v~A~s~~eK~eWl~~i~~ai~ 99 (104)
T cd01218 47 ILPLEGVQVESIEDDGIERNGWIIKTP--TKSFAVYAATETEKREWMLHINKCVT 99 (104)
T ss_pred EEEccceEEEecCCcccccceEEEecC--CeEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 468888877655554556899999998 67999999999999999999998764
No 91
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.79 E-value=0.0015 Score=51.49 Aligned_cols=53 Identities=19% Similarity=0.260 Sum_probs=41.3
Q ss_pred cccccCCceeeec----ccCCcCCCeEEEEecC---------------CCe---eEEEecCChhHHHHHHHHHHH
Q psy5716 6 ERIDIGHNCVEVA----CDYTKRKHVLRLSSPS---------------SNT---ELLLQADDTLTMAHWIRDLQT 58 (294)
Q Consensus 6 ~~~~l~~~~~~~a----~~~~krk~vf~l~~~~---------------~g~---e~l~qa~~~~~~~~W~~~i~~ 58 (294)
-.|+|.+|..... .+...|+|.|.|+... ++. -|+|+|++.+|+.+|+.+|+.
T Consensus 47 g~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~ 121 (122)
T cd01263 47 GLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNS 121 (122)
T ss_pred EEEEhhhCcccccccCChhhcCCCCeEEEEEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhc
Confidence 4578888887643 4688999999997531 112 389999999999999999975
No 92
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.67 E-value=0.003 Score=48.18 Aligned_cols=53 Identities=9% Similarity=0.168 Sum_probs=40.1
Q ss_pred CCcccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHH
Q psy5716 4 SCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQ 57 (294)
Q Consensus 4 ~~~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~ 57 (294)
..+.++|..|.+..+ +-..|.+.|.|.+......++|||.++.+...||.++.
T Consensus 50 ~~e~~~l~sc~~r~~-~~~dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 50 QDETLTLKSCSRRKT-ESIDKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred cceEEeeeecccccc-CCccceeeEeeeecCCCCeEEEEecCHHHHHHHHHhhc
Confidence 345667766666554 55678899999777222469999999999999999984
No 93
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.52 E-value=0.0081 Score=46.68 Aligned_cols=52 Identities=10% Similarity=0.179 Sum_probs=41.3
Q ss_pred cccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716 8 IDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA 60 (294)
Q Consensus 8 ~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~ 60 (294)
++|++..+.--.|-..-||.|.|.+. ++..|.|+|.++++..+|+++|..+.
T Consensus 58 ~~l~~~~V~d~~d~~~~knaF~I~~~-~~~s~~l~Akt~eeK~~Wm~~l~~~~ 109 (112)
T cd01261 58 FFMRKVDINDKPDSSEYKNAFEIILK-DGNSVIFSAKNAEEKNNWMAALISVQ 109 (112)
T ss_pred EeeeeeEEEEcCCCcccCceEEEEcC-CCCEEEEEECCHHHHHHHHHHHHHHh
Confidence 66666666543333445999999998 77889999999999999999997764
No 94
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.42 E-value=0.0076 Score=45.96 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=34.5
Q ss_pred ccccCCceee---ecccCCcCCCeEEEEecCC-C--eeEEEecCChhHHHHHHHHHHHH
Q psy5716 7 RIDIGHNCVE---VACDYTKRKHVLRLSSPSS-N--TELLLQADDTLTMAHWIRDLQTH 59 (294)
Q Consensus 7 ~~~l~~~~~~---~a~~~~krk~vf~l~~~~~-g--~e~l~qa~~~~~~~~W~~~i~~~ 59 (294)
.++|.+..+. +......|+|.|.+... + + -+-.|+|++++||.+|+.+|+.+
T Consensus 44 ~i~l~~~~v~~~~~~~~~~~~~~~F~i~~~-~~~~~~~r~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 44 LPPLNNFSVAECQLMKTERPRPNTFIIRCL-QWTTVIERTFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred ccccCCeEEeeeeeeeccCCCcceEEEEec-cCCcccCEEEEeCCHHHHHHHHHHHHhh
Confidence 3455555542 21112457799999843 2 1 22367899999999999999875
No 95
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=96.24 E-value=0.0057 Score=59.83 Aligned_cols=46 Identities=24% Similarity=0.415 Sum_probs=41.2
Q ss_pred eeeecccCCc--CCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716 14 CVEVACDYTK--RKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA 60 (294)
Q Consensus 14 ~~~~a~~~~k--rk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~ 60 (294)
.|.+...|++ ++|||-+.+. +|..++|||.++.++..|+.+||...
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (496)
T PTZ00283 442 VFPVPSKYTGSNAAHVFAVAFK-TGRRLLFQARSDPERDAWMQKIQSVL 489 (496)
T ss_pred cccccHHhhCCCCCcEEEEEec-CCcEEEEecCCchhHHHHHHHHHHhc
Confidence 3456667888 9999999999 99999999999999999999999875
No 96
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.33 E-value=0.044 Score=41.56 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=39.0
Q ss_pred ccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716 7 RIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA 60 (294)
Q Consensus 7 ~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~ 60 (294)
.++|.+-.+.--.|-..=||.|++.+. ..++++||+++++-.+|+..|+++.
T Consensus 47 ~~~L~~i~V~ni~D~~~~kNafki~t~--~~s~i~qaes~~~K~eWl~~le~a~ 98 (100)
T cd01226 47 TYSLNSVAVVNVKDRENAKKVLKLLIF--PESRIYQCESARIKTEWFEELEQAK 98 (100)
T ss_pred EEehHHeEEEecCCCcCcCceEEEEeC--CccEEEEeCCHHHHHHHHHHHHHHh
Confidence 455555444422222234999999998 6789999999999999999998863
No 97
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.90 E-value=0.054 Score=42.83 Aligned_cols=35 Identities=29% Similarity=0.482 Sum_probs=28.9
Q ss_pred cCCCeEEEEecC--CC--eeEEEecCChhHHHHHHHHHH
Q psy5716 23 KRKHVLRLSSPS--SN--TELLLQADDTLTMAHWIRDLQ 57 (294)
Q Consensus 23 krk~vf~l~~~~--~g--~e~l~qa~~~~~~~~W~~~i~ 57 (294)
..+|.|+++... +| .+++|+|++++|+..||.++.
T Consensus 81 ~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 81 GRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred CCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 468999997441 23 679999999999999999994
No 98
>PF15409 PH_8: Pleckstrin homology domain
Probab=94.77 E-value=0.095 Score=38.92 Aligned_cols=47 Identities=19% Similarity=0.387 Sum_probs=36.1
Q ss_pred ccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHH
Q psy5716 7 RIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTH 59 (294)
Q Consensus 7 ~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~ 59 (294)
.|+|..|.+.+ ++++.-|-|.+ +...|.+.|.|+.+.+.|+.+|+.+
T Consensus 42 si~v~~a~is~----~~~~~~I~ids--g~~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 42 SIDVSLAVISA----NKKSRRIDIDS--GDEIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred EEEccceEEEe----cCCCCEEEEEc--CCeEEEEEcCCHHHHHHHHHHHHhc
Confidence 46676675554 34556677765 4788999999999999999999864
No 99
>KOG0521|consensus
Probab=94.30 E-value=0.065 Score=55.06 Aligned_cols=55 Identities=24% Similarity=0.385 Sum_probs=48.6
Q ss_pred cccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716 6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA 62 (294)
Q Consensus 6 ~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~ 62 (294)
-..||+-|.+....+...|+..|++.+. ...|++||+|+.+...||.+|++.+..
T Consensus 316 ~~~dL~~csvk~~~~~~drr~CF~iiS~--tks~~lQAes~~d~~~Wi~~i~nsi~s 370 (785)
T KOG0521|consen 316 LIEDLRTCSVKPDAEQRDRRFCFEIISP--TKSYLLQAESEKDCQDWISALQNSILS 370 (785)
T ss_pred ccccchhccccCCcccccceeeEEEecC--CcceEEecCchhHHHHHHHHHHHHHHH
Confidence 3468888999888888899999999987 567999999999999999999997764
No 100
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=94.22 E-value=0.075 Score=51.61 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=35.5
Q ss_pred CCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716 21 YTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA 60 (294)
Q Consensus 21 ~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~ 60 (294)
-.+++|+|.+.+. +|..+.|+++++.++.+|+.+||++.
T Consensus 438 ~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 438 SQKHPNQLVLWFN-NGQKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred cCCCCceEEEEec-CCcEEEEecCChHHHHHHHHHHHHHh
Confidence 4458999999999 89999999999999999999999864
No 101
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.20 E-value=0.089 Score=41.40 Aligned_cols=35 Identities=20% Similarity=0.512 Sum_probs=31.7
Q ss_pred CcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHH
Q psy5716 22 TKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT 58 (294)
Q Consensus 22 ~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~ 58 (294)
+.++|-|+|.+. ...|.|.|+++.++.+|+++|+.
T Consensus 86 ~~~~~~~~i~t~--~R~~~l~a~s~~~~~~Wi~~i~~ 120 (121)
T cd01254 86 TGLRHGLKITNS--NRSLKLKCKSSRKLKQWMASIED 120 (121)
T ss_pred CCCceEEEEEcC--CcEEEEEeCCHHHHHHHHHHHHh
Confidence 566889999887 78999999999999999999986
No 102
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.92 E-value=0.2 Score=38.64 Aligned_cols=52 Identities=21% Similarity=0.242 Sum_probs=40.5
Q ss_pred ccccCCceeeecccCCc------CCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHH
Q psy5716 7 RIDIGHNCVEVACDYTK------RKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT 58 (294)
Q Consensus 7 ~~~l~~~~~~~a~~~~k------rk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~ 58 (294)
.|+|+.+.+.--.|-.+ =+|-|+|...+.+.-|+|.|.++++-..|++++..
T Consensus 48 ri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 48 RIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSESTDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred EEEcccEEEEECCCCccccCCceeEEEEEEEEcCCCeEEEEEECCHHHHHHHHHHHHH
Confidence 46677777665444332 39999999984467899999999999999999965
No 103
>KOG1449|consensus
Probab=92.64 E-value=0.014 Score=56.57 Aligned_cols=84 Identities=25% Similarity=0.491 Sum_probs=66.3
Q ss_pred cchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCC
Q psy5716 189 SDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKM 268 (294)
Q Consensus 189 ~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM 268 (294)
.|+.++..+++-|.+.+|.|+.. ..| .+.....+.+..++-.+...++.|+.+-++|..||.+.+.-.
T Consensus 272 ~di~v~S~d~dp~s~Q~~pp~~~-~~~------~k~Ds~s~sv~~~~~~~~~~se~~~r~a~~lse~ft~~~~~~----- 339 (670)
T KOG1449|consen 272 SDIVVESWDMDPYSRQLPPPYPK-EAF------EKEDSLSESVESLRFSLETMSEAHYRTAKFLSEHFTRLCKSK----- 339 (670)
T ss_pred cceeeeccccChhhhhcCCCCcc-ccc------ccccCcccceeeeccccccCCcccchHhhhhchhhhhhcccc-----
Confidence 68899999999999999999543 221 222333445566666777899999999999999999887733
Q ss_pred CccchhHhhcccccccCC
Q psy5716 269 EARNLAIMFGPTLVRAGD 286 (294)
Q Consensus 269 ~~~nLAivf~P~L~~~~~ 286 (294)
.+++|++.|+++|++.
T Consensus 340 --~s~~I~~~~~~~r~pp 355 (670)
T KOG1449|consen 340 --KSLAIVWSPNLFRPPP 355 (670)
T ss_pred --ccceeecCCCCCCCCC
Confidence 8999999999999965
No 104
>KOG3523|consensus
Probab=92.15 E-value=0.15 Score=49.92 Aligned_cols=40 Identities=33% Similarity=0.497 Sum_probs=32.9
Q ss_pred ccCCcCCCeEEEEecC----CCeeEEEecCChhHHHHHHHHHHH
Q psy5716 19 CDYTKRKHVLRLSSPS----SNTELLLQADDTLTMAHWIRDLQT 58 (294)
Q Consensus 19 ~~~~krk~vf~l~~~~----~g~e~l~qa~~~~~~~~W~~~i~~ 58 (294)
.....++|+|+++.-. -..||||+|++..||+.||.++.-
T Consensus 549 ~~~~~~~hlF~ltLl~N~~~~~~e~lL~a~s~Sd~~RWi~Al~p 592 (695)
T KOG3523|consen 549 NSLSSRPHLFLLTLLSNHQGRQTELLLSAESQSDRQRWISALRP 592 (695)
T ss_pred cccccccceEEEehhhccCCCceeeeecCCchHHHHHHHHhcCC
Confidence 3466789999998761 237899999999999999999953
No 105
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=91.81 E-value=0.33 Score=37.57 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=27.0
Q ss_pred CCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHH
Q psy5716 25 KHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTH 59 (294)
Q Consensus 25 k~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~ 59 (294)
.+||.+.|. ..+|.|.+++.+|+.+|+.+|+++
T Consensus 80 ~~~~~i~T~--~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 80 LKVFSIFTP--TKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp SEEEEEE-S--S-EEEEEESSHHHHHHHHHHHHH-
T ss_pred CCCcEEECC--CcEEEEEECCHHHHHHHHHHHHhC
Confidence 568888777 568999999999999999999874
No 106
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=91.39 E-value=0.52 Score=36.28 Aligned_cols=52 Identities=13% Similarity=0.269 Sum_probs=45.4
Q ss_pred ccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHH
Q psy5716 7 RIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTH 59 (294)
Q Consensus 7 ~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~ 59 (294)
-+.|.|..+....|-.+.+|.|.+... .=.--++-+.+..|+.+|+..++..
T Consensus 57 kLPL~~i~v~~lEd~e~~~~aFeI~G~-li~~i~v~C~~~~e~~~Wl~hL~~~ 108 (111)
T cd01225 57 KLPLTGIIVTRLEDTEALKNAFEISGP-LIERIVVVCNNPQDAQEWVELLNAN 108 (111)
T ss_pred eecccccEEechHhccCccceEEEecc-CcCcEEEEeCCHHHHHHHHHHHHhh
Confidence 367888888887788889999999988 6678899999999999999999875
No 107
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=90.19 E-value=0.64 Score=35.83 Aligned_cols=36 Identities=17% Similarity=0.374 Sum_probs=33.2
Q ss_pred CcCCCeEEEEecCCC-eeEEEecCChhHHHHHHHHHHH
Q psy5716 22 TKRKHVLRLSSPSSN-TELLLQADDTLTMAHWIRDLQT 58 (294)
Q Consensus 22 ~krk~vf~l~~~~~g-~e~l~qa~~~~~~~~W~~~i~~ 58 (294)
.+|.++|-+++. .| ...+|..+...|+..|-++|+.
T Consensus 71 ~~~~~~F~irtg-~~vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 71 DQRDNCFLIRTG-TQVENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred CCCceEEEEEcC-CceeeEEEEecCHHHHHHHHHHHhc
Confidence 378899999999 88 9999999999999999999974
No 108
>KOG4370|consensus
Probab=90.05 E-value=1.5 Score=41.51 Aligned_cols=83 Identities=20% Similarity=0.345 Sum_probs=60.9
Q ss_pred ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCC-------CH
Q psy5716 155 LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIE-------DP 227 (294)
Q Consensus 155 GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~-------~~ 227 (294)
|++|.+...++.++++..-+.|.+- .. .|+|..++..|+|++.+|||++|-++-.-+.++++.. +.
T Consensus 91 ~~s~~~~eksr~~e~k~k~kk~~k~--~~-----aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r~Ci~e~~~~~~~l~p 163 (514)
T KOG4370|consen 91 GISRLSPEKSRLDELKRKAKKGEKM--IF-----ADAHDAAGLIKRFLRQIPEPVVPIEFPSVARSCIREGLATTTQLTP 163 (514)
T ss_pred cccccCcccchhHHHHHhhhhhhhh--hH-----HHHHHHHhHHHHhhhccCCccccccchHHHHHHhhccccchhhcCc
Confidence 9999999999999998887776554 22 7999999999999999999999977655555554311 12
Q ss_pred HHHHHHHHHHHhhCChh
Q psy5716 228 ATRMATIKKLVHELPEH 244 (294)
Q Consensus 228 ~~~~~~l~~ll~~LP~~ 244 (294)
...-..++..+..||..
T Consensus 164 ~tvcSllk~~lr~lpen 180 (514)
T KOG4370|consen 164 KTVCSLLKSRLRRLPEN 180 (514)
T ss_pred hhHHHHHHHHHhhcchh
Confidence 22335556666677754
No 109
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=90.02 E-value=0.83 Score=34.50 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=30.1
Q ss_pred CCeEEEEecCCC-eeEEEecCChhHHHHHHHHHHHHH
Q psy5716 25 KHVLRLSSPSSN-TELLLQADDTLTMAHWIRDLQTHA 60 (294)
Q Consensus 25 k~vf~l~~~~~g-~e~l~qa~~~~~~~~W~~~i~~~~ 60 (294)
.+-|.|...+.+ ..|.|||.+.++...|+++|+.+.
T Consensus 59 ~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 59 PLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 688999776223 489999999999999999998864
No 110
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.37 E-value=0.88 Score=35.46 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=32.6
Q ss_pred cCCCeEEEEecCCC-eeEEEecCChhHHHHHHHHHHHHH
Q psy5716 23 KRKHVLRLSSPSSN-TELLLQADDTLTMAHWIRDLQTHA 60 (294)
Q Consensus 23 krk~vf~l~~~~~g-~e~l~qa~~~~~~~~W~~~i~~~~ 60 (294)
+-+|.|.|... +| ..|.|.+.++++...|++++..+.
T Consensus 74 ~~~~~f~L~~~-~~~~~~~f~~Ktee~K~kWm~al~~a~ 111 (116)
T cd01223 74 RWKYGFYLAHK-QGKTGFTFYFKTEHLRKKWLKALEMAM 111 (116)
T ss_pred ceEEEEEEEec-CCCccEEEEeCCHHHHHHHHHHHHHHH
Confidence 45899999988 65 899999999999999999997654
No 111
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=88.64 E-value=1.4 Score=34.35 Aligned_cols=39 Identities=18% Similarity=0.432 Sum_probs=28.8
Q ss_pred CcCCCeEEEEecC-CCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716 22 TKRKHVLRLSSPS-SNTELLLQADDTLTMAHWIRDLQTHA 60 (294)
Q Consensus 22 ~krk~vf~l~~~~-~g~e~l~qa~~~~~~~~W~~~i~~~~ 60 (294)
...|+.+..+.+. ....|.+||.+.++-+.|+..|+...
T Consensus 73 d~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il 112 (114)
T cd01232 73 DPCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREIL 112 (114)
T ss_pred CCceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence 3455555445441 13689999999999999999998864
No 112
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=87.79 E-value=1.3 Score=33.95 Aligned_cols=43 Identities=16% Similarity=0.498 Sum_probs=36.7
Q ss_pred ecccCC--cCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716 17 VACDYT--KRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA 60 (294)
Q Consensus 17 ~a~~~~--krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~ 60 (294)
+..|++ |-.|...++.. +|..++++++|+-++.+|...|++.-
T Consensus 54 V~~e~~~iK~~~CI~ik~k-~~~k~vlt~~d~i~l~qW~~elr~a~ 98 (116)
T cd01240 54 VSVEFQQIKEENCILLKIR-DEKKIVLTNSDEIELKQWKKELRDAH 98 (116)
T ss_pred cchhheeeccCceEEEEEc-CCceEEEecCCcHHHHHHHHHHHHHH
Confidence 344444 77899999999 89999999999999999999998753
No 113
>KOG4271|consensus
Probab=85.69 E-value=0.82 Score=47.09 Aligned_cols=95 Identities=14% Similarity=0.072 Sum_probs=68.7
Q ss_pred cchH--HHHHHHH--HHHhhCCCCCCCcchHHHHHHh--hcCCCHHHHHHHHHHHH-hh--CChhHHH----HHHHHHHH
Q psy5716 189 SDVN--VISSLLK--SFFRRLPDSLLTTELYPHFIQA--DKIEDPATRMATIKKLV-HE--LPEHHFQ----TLKYILQH 255 (294)
Q Consensus 189 ~dv~--~va~lLK--~fLreLP~pLi~~~~~~~~~~~--~~~~~~~~~~~~l~~ll-~~--LP~~n~~----~L~~L~~~ 255 (294)
.++| .|...++ .-||..+..+.+......+..+ +...-.+.|+..++..+ .. .|.+|+. ++..++..
T Consensus 427 ~~ph~s~v~e~Ie~~~~lr~~~~~~~~~~~C~~ld~a~gY~~~~Ne~riss~~~aices~~~p~pnnk~~~d~~LRivm~ 506 (1100)
T KOG4271|consen 427 QQPHLSYVGESIEKSHSLRQQGQQIAPKLQCVFLDEASGYGRDINEKRISSVLKAICESRNSPEPNNKDLADLDLRIVMC 506 (1100)
T ss_pred cCcchhHHHhhhhhhhhhhhcccccCCccccccccccccccccccHHHHHHHHHHHHhhcCCCccccchhHHHHHHHHHH
Confidence 4777 4677777 7788888777776655444444 44444566777666544 44 6887776 77777777
Q ss_pred HHHHHhcccccCCCcc-chhHhhcc-cccc
Q psy5716 256 LKRVVDNSEVNKMEAR-NLAIMFGP-TLVR 283 (294)
Q Consensus 256 L~~v~~~~~~NkM~~~-nLAivf~P-~L~~ 283 (294)
+..+..++..|.|++. ..+.|.+| .|++
T Consensus 507 m~~g~~~s~~ni~n~~~~s~aCkS~~llL~ 536 (1100)
T KOG4271|consen 507 MMCGDPFSADNILNPVLASAACKSPHLLLR 536 (1100)
T ss_pred HhcCCchhhhhhcChhhHHHHhcChHHHHh
Confidence 7888889999999999 99999999 4666
No 114
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=84.81 E-value=3.1 Score=32.56 Aligned_cols=53 Identities=17% Similarity=0.303 Sum_probs=38.6
Q ss_pred ccccCCceeeec---------ccCCcCCCeEEEEecC-----CCeeEEEecCChhHHHHHHHHHHHH
Q psy5716 7 RIDIGHNCVEVA---------CDYTKRKHVLRLSSPS-----SNTELLLQADDTLTMAHWIRDLQTH 59 (294)
Q Consensus 7 ~~~l~~~~~~~a---------~~~~krk~vf~l~~~~-----~g~e~l~qa~~~~~~~~W~~~i~~~ 59 (294)
.||+++..+.+. .+.+....+||+.+.. .+...||-|+++.|.+.|+.++.+.
T Consensus 52 vLdlrD~~fsV~~VtasDvi~a~~kDiP~If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 52 VLDMRDPEFSVSSVLESDVIHASKKDIPCIFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred EEEcCCCCEEEEEecHHHccccCcccCCeEEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 357765554432 2345567889998751 3577899999999999999999875
No 115
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=83.87 E-value=3.1 Score=32.08 Aligned_cols=40 Identities=20% Similarity=0.344 Sum_probs=34.2
Q ss_pred cCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHH
Q psy5716 20 DYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTH 59 (294)
Q Consensus 20 ~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~ 59 (294)
+-+....+|++...+.+...|+-|+++.|.+.|+.++..-
T Consensus 70 ~~kDiP~IF~I~~~~~~~~lllLA~s~~ek~kWV~~L~~~ 109 (112)
T cd01242 70 DAKEIPKIFQILYANEARDLLLLAPQTDEQNKWVSRLVKK 109 (112)
T ss_pred CcccCCeEEEEEeCCccceEEEEeCCchHHHHHHHHHHHh
Confidence 4555688999999855789999999999999999999754
No 116
>KOG0930|consensus
Probab=82.71 E-value=3.1 Score=37.39 Aligned_cols=42 Identities=17% Similarity=0.328 Sum_probs=33.1
Q ss_pred cCCcCCCeEEEEecCC-------------C-------eeEEEecCChhHHHHHHHHHHHHHh
Q psy5716 20 DYTKRKHVLRLSSPSS-------------N-------TELLLQADDTLTMAHWIRDLQTHAI 61 (294)
Q Consensus 20 ~~~krk~vf~l~~~~~-------------g-------~e~l~qa~~~~~~~~W~~~i~~~~~ 61 (294)
+.-+|.|.|.|-..++ | +.|-++|.+.+|+.+||.+|+.+++
T Consensus 315 edP~kP~cfEly~ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is 376 (395)
T KOG0930|consen 315 EDPKKPNCFELYIPSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAIS 376 (395)
T ss_pred cCCCCCCeEEEecCCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence 4567888888855422 2 3499999999999999999998764
No 117
>KOG0690|consensus
Probab=81.32 E-value=2.8 Score=38.86 Aligned_cols=42 Identities=14% Similarity=0.155 Sum_probs=34.5
Q ss_pred CCcCCCeEEEEecCCCe---eEEEecCChhHHHHHHHHHHHHHhhc
Q psy5716 21 YTKRKHVLRLSSPSSNT---ELLLQADDTLTMAHWIRDLQTHAIAQ 63 (294)
Q Consensus 21 ~~krk~vf~l~~~~~g~---e~l~qa~~~~~~~~W~~~i~~~~~~~ 63 (294)
..-|.|.|-++.- ..+ |-.|.+++.++.++|+.+||.+++..
T Consensus 75 erPrPntFiiRcL-QWTTVIERTF~ves~~eRq~W~~AIq~vsn~l 119 (516)
T KOG0690|consen 75 ERPRPNTFIIRCL-QWTTVIERTFYVESAEERQEWIEAIQAVSNRL 119 (516)
T ss_pred cCCCCceEEEEee-eeeeeeeeeeecCCHHHHHHHHHHHHHHhhhh
Confidence 4558999999877 554 44689999999999999999988654
No 118
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=80.71 E-value=2 Score=32.14 Aligned_cols=31 Identities=10% Similarity=0.283 Sum_probs=27.8
Q ss_pred EEEEecCCCeeEEEecCChhHHHHHHHHHHHH
Q psy5716 28 LRLSSPSSNTELLLQADDTLTMAHWIRDLQTH 59 (294)
Q Consensus 28 f~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~ 59 (294)
|++... .|..|.+-|.++.|..+|+..|++.
T Consensus 63 ~~~~~~-~~KSf~~~asS~~Er~eW~~hI~~~ 93 (96)
T cd01228 63 FRIHNK-NGKSYTFLLSSDYERSEWRESIQKL 93 (96)
T ss_pred hhcccc-CCceEEEEecCHHHHHHHHHHHHHH
Confidence 677776 7999999999999999999999875
No 119
>PF15406 PH_6: Pleckstrin homology domain
Probab=79.36 E-value=2.8 Score=32.19 Aligned_cols=31 Identities=10% Similarity=0.309 Sum_probs=26.6
Q ss_pred CCeEEEEecCCCeeEEEecCChhHHHHHHHHHH
Q psy5716 25 KHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQ 57 (294)
Q Consensus 25 k~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~ 57 (294)
.|=|.++. .|.+..|||.+..|+..|+.+|.
T Consensus 80 ~~kF~f~~--~G~khtF~A~s~aERD~Wv~~lk 110 (112)
T PF15406_consen 80 SNKFHFKI--KGHKHTFEAASAAERDNWVAQLK 110 (112)
T ss_pred CceEEEEe--CCceeeeecCCHHHhccHHHHhh
Confidence 45577776 49999999999999999999985
No 120
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=78.70 E-value=5.5 Score=31.86 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=29.3
Q ss_pred EEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhhc
Q psy5716 28 LRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQ 63 (294)
Q Consensus 28 f~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~~ 63 (294)
|.|.+......|.+||.+.+....|+..|+.....+
T Consensus 83 Feiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL~~Q 118 (133)
T cd01227 83 FEIWYNAREEVYILQAPTPEIKAAWVNEIRKVLTSQ 118 (133)
T ss_pred EEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 666666344679999999999999999999877544
No 121
>KOG4424|consensus
Probab=78.29 E-value=4.1 Score=40.08 Aligned_cols=55 Identities=22% Similarity=0.276 Sum_probs=41.2
Q ss_pred CcccccCCceeeecccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716 5 CERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA 62 (294)
Q Consensus 5 ~~~~~l~~~~~~~a~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~ 62 (294)
...+++.|+.+- -.++--+.|.|.++....| .-|||.++.+..+|+++|+.++..
T Consensus 317 r~~~s~~~~~v~-~~~~~~~~~tF~~~G~~r~--vel~a~t~~ek~eWv~~I~~~Id~ 371 (623)
T KOG4424|consen 317 RARCSISHMQVQ-EDDNEELPHTFILTGKKRG--VELQARTEQEKKEWVQAIQDAIDK 371 (623)
T ss_pred ceeeccCcchhc-ccccccCCceEEEecccce--EEeecCchhhHHHHHHHHHHHHHH
Confidence 344555554432 2467778999999997455 459999999999999999998754
No 122
>KOG2059|consensus
Probab=72.77 E-value=5.5 Score=40.14 Aligned_cols=38 Identities=21% Similarity=0.402 Sum_probs=33.9
Q ss_pred CcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716 22 TKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI 61 (294)
Q Consensus 22 ~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~ 61 (294)
-+.||||++-.. | ....+||.+-.|..+|+.+|..+..
T Consensus 628 F~~knv~qVV~~-d-rtly~Q~~n~vEandWldaL~kvs~ 665 (800)
T KOG2059|consen 628 FKMKNVFQVVHT-D-RTLYVQAKNCVEANDWLDALRKVSC 665 (800)
T ss_pred cCCCceEEEEec-C-cceeEecCCchHHHHHHHHHHHHhc
Confidence 467999999999 6 5888999999999999999998764
No 123
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=65.47 E-value=20 Score=27.17 Aligned_cols=51 Identities=14% Similarity=0.276 Sum_probs=38.2
Q ss_pred cccCCceee-ecccCCcCCCeEEEEecCCCe-------eEEEecCChhHHHHHHHHHHHH
Q psy5716 8 IDIGHNCVE-VACDYTKRKHVLRLSSPSSNT-------ELLLQADDTLTMAHWIRDLQTH 59 (294)
Q Consensus 8 ~~l~~~~~~-~a~~~~krk~vf~l~~~~~g~-------e~l~qa~~~~~~~~W~~~i~~~ 59 (294)
|.|.|..+- +...+-+|+|+|.|-.+ ++. +.-+.|++++++..|-++.=++
T Consensus 46 lpLdnLk~Rdve~gf~sk~~~FeLfnp-d~rnvykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 46 LPLDGLKLRDIEGGFMSRNHKFALFYP-DGRNVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred eeccccEEEeecccccCCCcEEEEEcC-cccccccchheeeecCCCHHHHHHHHHHHHhc
Confidence 444454443 56678899999999887 543 3568999999999999987654
No 124
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=64.37 E-value=21 Score=27.25 Aligned_cols=35 Identities=9% Similarity=0.253 Sum_probs=27.0
Q ss_pred CCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716 24 RKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI 61 (294)
Q Consensus 24 rk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~ 61 (294)
-...|.+.++ +..|.|.. .+.+...|+++|+++..
T Consensus 66 ~~~~F~I~tp--~RtY~l~d-~~~~A~~W~~~I~~~~~ 100 (104)
T PF14593_consen 66 SFKTFFIHTP--KRTYYLED-PEGNAQQWVEAIEEVKK 100 (104)
T ss_dssp SSSEEEEEET--TEEEEEE--TTS-HHHHHHHHHHHHH
T ss_pred cCCEEEEECC--CcEEEEEC-CCCCHHHHHHHHHHHHH
Confidence 3458999998 89999988 55568889999998754
No 125
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=59.20 E-value=17 Score=27.86 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=37.8
Q ss_pred CcccccCCceeeeccc----------CCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716 5 CERIDIGHNCVEVACD----------YTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA 60 (294)
Q Consensus 5 ~~~~~l~~~~~~~a~~----------~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~ 60 (294)
.+.+.|.|=+++-... ....++-|..-- .|.+..|..+++.|...|++++=++.
T Consensus 47 ~e~~qldGyTvDy~~~~~~~~~~~~~~~gg~~ff~avk--egd~~~fa~~de~~r~lwvqa~yrat 110 (117)
T cd01234 47 TEFIQLDGYTVDYMPESDPDPNSELSLQGGRHFFNAVK--EGDELKFATDDENERHLWVQAMYRAT 110 (117)
T ss_pred hhheeecceEEeccCCCCCCcccccccccchhhhheec--cCcEEEEeccchHHHHHHHHHHHHHc
Confidence 3456666666663321 224456666654 58999999999999999999997753
No 126
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=57.32 E-value=17 Score=29.12 Aligned_cols=37 Identities=11% Similarity=0.261 Sum_probs=24.9
Q ss_pred cCCCeEEEEecC---CCeeEEEecCChhHHHHHHHHHHHH
Q psy5716 23 KRKHVLRLSSPS---SNTELLLQADDTLTMAHWIRDLQTH 59 (294)
Q Consensus 23 krk~vf~l~~~~---~g~e~l~qa~~~~~~~~W~~~i~~~ 59 (294)
..++.|.++..- .|.+|.|.|+++.+.+.|+..|.+.
T Consensus 95 ~~~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 95 DSKSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp -TSSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred cCCCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 345555555421 3456899999999999999999764
No 127
>KOG3723|consensus
Probab=56.99 E-value=5.9 Score=39.09 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=38.5
Q ss_pred cccccCCceeeecccCCc-C---CCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716 6 ERIDIGHNCVEVACDYTK-R---KHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA 62 (294)
Q Consensus 6 ~~~~l~~~~~~~a~~~~k-r---k~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~ 62 (294)
.||||+.--.-.+-..++ + ...|.+=|. |.+ |++.|+|+...++|++.++-+.+.
T Consensus 780 ~~IDl~~IRSVk~v~~kr~~rslpKAFEIFTA-D~T-~ILKaKDeKNAEEWlqCL~IavAH 838 (851)
T KOG3723|consen 780 CPIDLSKIRSVKAVAKKRRDRSLPKAFEIFTA-DKT-YILKAKDEKNAEEWLQCLNIAVAH 838 (851)
T ss_pred CCccHHHhhhHHHHHhhhhhcccchhhheeec-Cce-EEeecccccCHHHHHHHHHHHHHH
Confidence 457766543332222212 1 347999999 766 999999999999999999976654
No 128
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=52.58 E-value=24 Score=26.14 Aligned_cols=32 Identities=13% Similarity=0.306 Sum_probs=25.8
Q ss_pred CCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHH
Q psy5716 25 KHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTH 59 (294)
Q Consensus 25 k~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~ 59 (294)
.+-|.+.++ |..|.|. +.+.....|+.+|+++
T Consensus 56 ~~~F~I~Tp--~rty~le-D~~~~a~~W~~~I~~~ 87 (89)
T cd01262 56 SSHFFVHTP--NKVYSFE-DPKGRASQWKKAIEDL 87 (89)
T ss_pred CccEEEECC--CceEEEE-CCCCCHHHHHHHHHHH
Confidence 467999887 7888885 4458889999999875
No 129
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=48.82 E-value=15 Score=26.22 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=30.8
Q ss_pred CceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhCCC
Q psy5716 154 FLFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPD 207 (294)
Q Consensus 154 ~GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreLP~ 207 (294)
.|-|+++|+.. +.++.+.++-. + .+ .+.+++++++-..|..+|.
T Consensus 5 ~~~~~v~G~~~-l~~l~~~~~~~----l--~~---~~~~Tl~G~i~~~l~~iP~ 48 (81)
T PF03471_consen 5 DGTYIVSGSTP-LDDLNELLGLD----L--PE---EDYDTLGGLILEQLGRIPE 48 (81)
T ss_dssp TSEEEEETTSB-HHHHHHHHTS-----T--TT---TTTSBHHHHHHHHHTSS--
T ss_pred CCEEEEEecCC-HHHHHHHHCcC----C--Cc---cchhhHHHHHHHHcCCCCC
Confidence 37799999765 67777776642 2 11 4666999999999999986
No 130
>KOG1264|consensus
Probab=46.50 E-value=40 Score=35.06 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=39.1
Q ss_pred ccCCceeeec-ccCCcCCCeEEEEecC-CCeeEEEecCChhHHHHHHHHHHHHHhhc
Q psy5716 9 DIGHNCVEVA-CDYTKRKHVLRLSSPS-SNTELLLQADDTLTMAHWIRDLQTHAIAQ 63 (294)
Q Consensus 9 ~l~~~~~~~a-~~~~krk~vf~l~~~~-~g~e~l~qa~~~~~~~~W~~~i~~~~~~~ 63 (294)
|+.-+.+-.+ .....|-.||.|.... .---|+|-|++.++..+|+++|++++...
T Consensus 857 d~~~~nvv~~~q~~n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~a 913 (1267)
T KOG1264|consen 857 DLNTYNVVKAPQGKNQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWKA 913 (1267)
T ss_pred cccccceeecccccCCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHHh
Confidence 3433333332 3556688899996552 33558899999999999999999987654
No 131
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=45.97 E-value=51 Score=24.15 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=34.8
Q ss_pred eeecCC-CHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhC---------------CCCCCCcchHHHH
Q psy5716 156 FPRVPG-NTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRL---------------PDSLLTTELYPHF 218 (294)
Q Consensus 156 IfR~~g-~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreL---------------P~pLi~~~~~~~~ 218 (294)
-||.+. +...++++...+... . +. ..=+.+++++-|.|..|| ..||-|..+-+.|
T Consensus 11 ~~Rra~f~k~~iKr~~~~~~~~-~--v~-----~~v~i~v~glaKvFVGeivE~A~~V~~~~~~~~~~Pl~P~HireA~ 81 (85)
T cd08048 11 MFRRSSFPKAAIKRLIQSVTGQ-S--VS-----QNVVIAVAGIAKVFVGEIVEEARDVQEEWGEANTGPLQPRHLREAY 81 (85)
T ss_pred HHHHhhccHHHHHHHHHHHcCC-C--CC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcHHHHHHH
Confidence 355554 666777775554331 1 11 023467899999999998 6777777665554
No 132
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=43.71 E-value=43 Score=33.95 Aligned_cols=71 Identities=13% Similarity=0.258 Sum_probs=45.7
Q ss_pred HHHHHhhCCCCCCCcchHHHH------HHhhc---CCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCC
Q psy5716 198 LKSFFRRLPDSLLTTELYPHF------IQADK---IEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKM 268 (294)
Q Consensus 198 LK~fLreLP~pLi~~~~~~~~------~~~~~---~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM 268 (294)
++.|++.+|--|+..+.-.-+ .+... -.....-++.++.....|++..+.+..|++.|...|.. |
T Consensus 302 ~~~~~~~ipv~~i~~~~~~l~Gaa~~~~~~~~~~~~~~~~~l~~~I~~~~~~Lt~~E~~IA~yIl~n~~~v~~------~ 375 (638)
T PRK14101 302 FEAYLANIPTYLITAEYPAFLGVSAILAEQLSNRTGGASSAVFERIRQMRDALTPAERRVADLALNHPRSIIN------D 375 (638)
T ss_pred hHHHHhcCCEEEEeCCChhHHHHHHHHHHHhccccCCchHHHHHHHHHHHhhcCHHHHHHHHHHHhCHHHHHh------c
Confidence 345566667666665532111 11111 12234556788888899999999999999999998866 5
Q ss_pred Cccchh
Q psy5716 269 EARNLA 274 (294)
Q Consensus 269 ~~~nLA 274 (294)
|+..||
T Consensus 376 si~eLA 381 (638)
T PRK14101 376 PIVDIA 381 (638)
T ss_pred cHHHHH
Confidence 555554
No 133
>PF12480 DUF3699: Protein of unknown function (DUF3699) ; InterPro: IPR022168 This domain family is found in eukaryotes, and is approximately 80 amino acids in length.
Probab=41.02 E-value=62 Score=23.22 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=31.5
Q ss_pred cCCcCCCeEEEEecCCCeeEEEecCC-----hhHHHHHHHHHH
Q psy5716 20 DYTKRKHVLRLSSPSSNTELLLQADD-----TLTMAHWIRDLQ 57 (294)
Q Consensus 20 ~~~krk~vf~l~~~~~g~e~l~qa~~-----~~~~~~W~~~i~ 57 (294)
-|.+-+-.++++.. .|..|.+|-.+ +.....|+..|.
T Consensus 21 v~~~~~~~l~lk~~-t~r~~yl~L~~~~~~~~~~F~~w~~lv~ 62 (77)
T PF12480_consen 21 VHDLEKQQLKLKLV-TGRPFYLQLCAPADKPETLFGEWIRLVS 62 (77)
T ss_pred EEcCcccEEEEEEc-cCCEEEEEEeCcccCcchhHHHHHHHHH
Confidence 36777889999999 99999999544 778999999997
No 134
>KOG3640|consensus
Probab=37.93 E-value=45 Score=35.10 Aligned_cols=56 Identities=16% Similarity=0.347 Sum_probs=42.4
Q ss_pred CcccccCCceee-e--c-ccCCcCCCeEEEE----ecCCC--------eeEEEecCChhHHHHHHHHHHHHH
Q psy5716 5 CERIDIGHNCVE-V--A-CDYTKRKHVLRLS----SPSSN--------TELLLQADDTLTMAHWIRDLQTHA 60 (294)
Q Consensus 5 ~~~~~l~~~~~~-~--a-~~~~krk~vf~l~----~~~~g--------~e~l~qa~~~~~~~~W~~~i~~~~ 60 (294)
...|||..|+-. + | .|..-|.|.|.|- .-+|. .-.+|.|++.++++.|+.+|+...
T Consensus 1035 ig~IDLt~CTsq~ie~a~rdicar~ntFhie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL 1106 (1116)
T KOG3640|consen 1035 IGQIDLTKCTSQSIEEARRDICARPNTFHIEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTL 1106 (1116)
T ss_pred ceeeehhhhhccccccchhhhccCCceeEEEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHH
Confidence 346888888755 2 2 5789999999997 22111 247899999999999999998765
No 135
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=36.62 E-value=45 Score=23.61 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=27.8
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchhH
Q psy5716 231 MATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAI 275 (294)
Q Consensus 231 ~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLAi 275 (294)
+..++.....|++..+.+..|++.+...+.. |++..||-
T Consensus 4 ~~~i~~~~~~ls~~e~~Ia~yil~~~~~~~~------~si~elA~ 42 (77)
T PF01418_consen 4 LEKIRSQYNSLSPTEKKIADYILENPDEIAF------MSISELAE 42 (77)
T ss_dssp HHHHHHHGGGS-HHHHHHHHHHHH-HHHHCT--------HHHHHH
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHhCHHHHHH------ccHHHHHH
Confidence 4566777889999999999999999988765 56666654
No 136
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=33.85 E-value=1e+02 Score=23.97 Aligned_cols=51 Identities=14% Similarity=0.242 Sum_probs=30.9
Q ss_pred ccCCceeeecccCCcC-----CCeEEEEecCCCe-----eEEEecCChhHHHHHHHHHHHH
Q psy5716 9 DIGHNCVEVACDYTKR-----KHVLRLSSPSSNT-----ELLLQADDTLTMAHWIRDLQTH 59 (294)
Q Consensus 9 ~l~~~~~~~a~~~~kr-----k~vf~l~~~~~g~-----e~l~qa~~~~~~~~W~~~i~~~ 59 (294)
++.+..+-...++.|+ .+.|-++....+. --.|-|+|+..+..|+.+|+-.
T Consensus 47 ~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~ 107 (114)
T cd01259 47 LLHGHNVYTGLGWRKKYKSPTDYCFGFKAVGDQSKGSQSIKYLCAEDLPTLDRWLTAIRIA 107 (114)
T ss_pred hcccCcEEEEechhhccCCCCCceEEEeccccCcccchhheeeccCCHHHHHHHHHHHHHH
Confidence 3444444444344443 4456664431222 2578899999999999999753
No 137
>PF06297 PET: PET Domain; InterPro: IPR010442 The PET domain is a ~110 amino acid motif in the N-terminal part of LIM domain proteins. The domain was described in Drosophila proteins involved in cell differentiation and is named after Prickle, Espinas and Testin. PET domain proteins contain about three zinc-binding LIM domains (see PDOC00382 from INTERPRO, IPR001781 from INTERPRO) and are found among metazoans. The PET domain has been suggested to play a role in protein-protein interactions with proteins involved in planar polarity signalling or organisation of the cytoskeleton []. Some proteins known to contain a PET domain: Mammalian testin protein (Q9UGI8 from SWISSPROT), which may function as a tumour suppressor. Mammalian LIM domain only protein 6 (LMO6/Prickle3, O43900 from SWISSPROT). Fruit fly prickle (A1Z6W3 from SWISSPROT) and espinas (Q9U1I1 from SWISSPROT) proteins encoded by the tissue polarity gene prickle (pk), involved in the control of orientation of bristles and hairs. Mammalian prickle-like proteins 1 (Q96MT3 from SWISSPROT) and 2 (Q7Z3G6 from SWISSPROT). ; GO: 0008270 zinc ion binding
Probab=33.51 E-value=78 Score=24.26 Aligned_cols=53 Identities=15% Similarity=0.348 Sum_probs=33.9
Q ss_pred cCCCCCCcchHHHHHHHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHhhCChhHH
Q psy5716 182 LEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHF 246 (294)
Q Consensus 182 ~~~~~~~~dv~~va~lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~ 246 (294)
......|.-+..-..++..||..||+--+|.. +........+.++.+||++-.
T Consensus 17 ~~~~Y~WvPpgl~~~~v~~Ym~~LP~~~vP~~------------gS~Ge~~R~~QL~~QLP~hD~ 69 (106)
T PF06297_consen 17 ALEEYAWVPPGLSPELVEQYMSCLPEEKVPVV------------GSPGEKYRRRQLLYQLPPHDL 69 (106)
T ss_pred ccceeeecCCCCChHHHHHHHHhCCCcCCCCC------------CCHHHHHHHHHHHHcCCcccC
Confidence 33444555666678899999999998777752 111123456667778876544
No 138
>KOG3549|consensus
Probab=33.36 E-value=50 Score=30.81 Aligned_cols=42 Identities=7% Similarity=0.370 Sum_probs=35.5
Q ss_pred CCcCCCeEEEEecCCC-eeEEEecCChhHHHHHHHHHHHHHhhc
Q psy5716 21 YTKRKHVLRLSSPSSN-TELLLQADDTLTMAHWIRDLQTHAIAQ 63 (294)
Q Consensus 21 ~~krk~vf~l~~~~~g-~e~l~qa~~~~~~~~W~~~i~~~~~~~ 63 (294)
..-|.|.|+++.. || +.=++|.....+...|+++|...+...
T Consensus 221 dklRqNAFeV~al-dGvstGii~c~~a~d~~dWL~ait~Ni~~L 263 (505)
T KOG3549|consen 221 DKLRQNAFEVRAL-DGVSTGIIHCDEAADLSDWLKAITDNIVGL 263 (505)
T ss_pred hhhhhccceEEee-cccccceeEEhhhhHHHHHHHHHHHHHHHH
Confidence 4568999999999 66 667899999999999999998876543
No 139
>COG4835 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.03 E-value=39 Score=25.98 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=32.1
Q ss_pred ceeecCCCHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhhC
Q psy5716 155 LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRL 205 (294)
Q Consensus 155 GIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLreL 205 (294)
.=|+++|..+++..++..+-.... +....++..+|.=|-.++..|
T Consensus 62 enfvisG~ISqi~~i~~~iv~e~s------eleqeeve~La~Plld~lkRL 106 (124)
T COG4835 62 ENFVISGRISQINQIKDRIVKEPS------ELEQEEVEGLAAPLLDMLKRL 106 (124)
T ss_pred eeeEEeeehHHHHHHHhHhccCHH------HhhHHHHHHHHHHHHHHHHHh
Confidence 449999999999999988753221 122367877887777777665
No 140
>PLN02866 phospholipase D
Probab=32.70 E-value=1e+02 Score=33.18 Aligned_cols=45 Identities=11% Similarity=0.404 Sum_probs=36.5
Q ss_pred eeecccCCcC---CCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716 15 VEVACDYTKR---KHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI 61 (294)
Q Consensus 15 ~~~a~~~~kr---k~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~ 61 (294)
+.+|.+++.+ +|-|++.+. +....|.+.+...+..|+.+|+.+..
T Consensus 261 ~~~~~~~k~~~~~~~~~~i~~~--~r~l~l~~~s~~~~~~w~~ai~~~~~ 308 (1068)
T PLN02866 261 ISLAKEIKERNPLRFGFKVTCG--NRSIRLRTKSSAKVKDWVAAINDAGL 308 (1068)
T ss_pred eeecccccccCCCcceEEEecC--ceEEEEEECCHHHHHHHHHHHHHHHh
Confidence 3445555444 889999875 78899999999999999999999863
No 141
>COG2747 FlgM Negative regulator of flagellin synthesis (anti-sigma28 factor) [Transcription / Cell motility and secretion / Intracellular trafficking and secretion]
Probab=32.36 E-value=96 Score=23.19 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHHHhh
Q psy5716 162 NTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRR 204 (294)
Q Consensus 162 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~fLre 204 (294)
+..+|.+|++.|..|... .|..-||.-|-.|+.+
T Consensus 59 ~~~kVeeiK~aI~~G~yk---------vD~~kiAd~ll~f~~~ 92 (93)
T COG2747 59 REEKVEELKQAIENGEYK---------VDTEKIADKLLDFAKQ 92 (93)
T ss_pred hHHHHHHHHHHHHcCCee---------ecHHHHHHHHHHHHhc
Confidence 568999999999998754 6778888888888765
No 142
>PF15404 PH_4: Pleckstrin homology domain
Probab=30.86 E-value=53 Score=27.84 Aligned_cols=40 Identities=13% Similarity=0.258 Sum_probs=30.7
Q ss_pred ccCCcCCCeEEE--EecCCCeeEEEecCChhHHHHHHHHHHH
Q psy5716 19 CDYTKRKHVLRL--SSPSSNTELLLQADDTLTMAHWIRDLQT 58 (294)
Q Consensus 19 ~~~~krk~vf~l--~~~~~g~e~l~qa~~~~~~~~W~~~i~~ 58 (294)
.+..+.++.++. ++...|....|.|.+..|...|+.+|..
T Consensus 142 ~~~~~~~~~~~~v~~Lg~~gks~VF~ARSRqERD~WV~~I~~ 183 (185)
T PF15404_consen 142 TNQGKNPNKIKMVSRLGVSGKSMVFMARSRQERDLWVLAINT 183 (185)
T ss_pred cccccCcCcceeccccCCCCcEEEEEeccHHHHHHHHHHHHh
Confidence 344555666653 4447788999999999999999999974
No 143
>PF03540 TFIID_30kDa: Transcription initiation factor TFIID 23-30kDa subunit; InterPro: IPR003923 Transcription initiation factor TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. The complex includes TATA binding protein (TBP) and various TBP-associated factors (TAFS). TFIID a bona fide RNA polymerase II-specific TATA-binding protein-associated factor (TAF) and is essential for viability []. TFIID acts to nucleate the transcription complex, recruiting the rest of the factors through a direct interaction with TFIIB. The TBP subunit of TFIID is sufficient for TATA-element binding and TFIIB interaction, and can support basal transcription. The protein belongs to the TAF2H family.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus
Probab=29.44 E-value=81 Score=20.78 Aligned_cols=31 Identities=10% Similarity=0.269 Sum_probs=24.4
Q ss_pred CCCCcchHHHHHHhhcCCCHHHHHHHHHHHH
Q psy5716 208 SLLTTELYPHFIQADKIEDPATRMATIKKLV 238 (294)
Q Consensus 208 pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll 238 (294)
|+||.++-+.++.....+..+.++..+-.+.
T Consensus 1 P~IPD~v~~~yL~~~G~~~~D~rv~RLvSLa 31 (51)
T PF03540_consen 1 PTIPDEVTDYYLERSGFQTSDPRVKRLVSLA 31 (51)
T ss_pred CCCCHHHHHHHHHHCCCCCCCHhHHHHHHHH
Confidence 7899999999999888877777766655444
No 144
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=29.20 E-value=2e+02 Score=21.74 Aligned_cols=44 Identities=16% Similarity=0.275 Sum_probs=34.0
Q ss_pred chHHHHHHhhcCC--CHHHHHHHHHHHHhhCChhHHHHHHHHHHHHH
Q psy5716 213 ELYPHFIQADKIE--DPATRMATIKKLVHELPEHHFQTLKYILQHLK 257 (294)
Q Consensus 213 ~~~~~~~~~~~~~--~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~ 257 (294)
..+..+.++.... ...++-+.+..+...+|.. +.+|.|+...+.
T Consensus 65 ~a~~~l~~I~~n~~lT~~q~~~~I~~l~~~~~~e-~~~l~~i~~~~~ 110 (113)
T PF02520_consen 65 SAFAKLSAILDNKSLTRQQQQEAIDALRKQYPEE-VDTLFFIRKEIE 110 (113)
T ss_pred HHHHHHHHHHcCcccCHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHh
Confidence 5666666665532 4567789999999999999 999999887654
No 145
>KOG3551|consensus
Probab=27.77 E-value=93 Score=29.54 Aligned_cols=43 Identities=19% Similarity=0.381 Sum_probs=33.1
Q ss_pred cCCcC-CCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHhh
Q psy5716 20 DYTKR-KHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA 62 (294)
Q Consensus 20 ~~~kr-k~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~~ 62 (294)
.|..- ...|.+.+.++-....+.+.|..+...|+.+|+...+.
T Consensus 230 ~~~DpEnR~lEihSpdg~~tliLR~kdsa~A~~Wf~AiHa~v~~ 273 (506)
T KOG3551|consen 230 IDADPENRQLEIHSPDGRHTLILRAKDSAEADSWFEAIHANVNT 273 (506)
T ss_pred CCCCcccceeeeeCCCCcceEEEEccCcHHHHHHHHHHHHHHhh
Confidence 34443 34799999944467888999999999999999986643
No 146
>KOG0705|consensus
Probab=27.43 E-value=49 Score=32.95 Aligned_cols=33 Identities=12% Similarity=0.296 Sum_probs=29.9
Q ss_pred eEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716 27 VLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA 60 (294)
Q Consensus 27 vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~ 60 (294)
.|.+-.. -|..|.|-|-..+|...|+++|+..+
T Consensus 447 ~F~IVs~-tgqtWhFeAtt~EERdaWvQai~sqI 479 (749)
T KOG0705|consen 447 CFEIVSN-TGQTWHFEATTYEERDAWVQAIQSQI 479 (749)
T ss_pred eEEEecc-ccchhhhhhcchhhHHHHHHHHHHHH
Confidence 7888877 89999999999999999999999765
No 147
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=27.41 E-value=1.6e+02 Score=22.78 Aligned_cols=36 Identities=11% Similarity=0.335 Sum_probs=29.5
Q ss_pred CCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHHh
Q psy5716 24 RKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI 61 (294)
Q Consensus 24 rk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~~ 61 (294)
...-|-|+|. .|. .-|.++|..+-+.|.+.|+...+
T Consensus 69 ~~~yfgL~T~-~G~-vEfec~~~~~~k~W~~gI~~mL~ 104 (110)
T PF08458_consen 69 ERRYFGLKTA-QGV-VEFECDSQREYKRWVQGIQHMLS 104 (110)
T ss_pred eEEEEEEEec-CcE-EEEEeCChhhHHHHHHHHHHHHH
Confidence 4567889998 664 66889999999999999998654
No 148
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=27.27 E-value=1.2e+02 Score=23.74 Aligned_cols=34 Identities=6% Similarity=0.287 Sum_probs=25.3
Q ss_pred cCCCeEEEEecCCCeeEEEecC--------------------ChhHHHHHHHHHHH
Q psy5716 23 KRKHVLRLSSPSSNTELLLQAD--------------------DTLTMAHWIRDLQT 58 (294)
Q Consensus 23 krk~vf~l~~~~~g~e~l~qa~--------------------~~~~~~~W~~~i~~ 58 (294)
.+.|+|.|+|. ...|..+.+ ..+....|-.+|+.
T Consensus 63 ~~~hcFEi~T~--~~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~q 116 (117)
T cd01239 63 HPPHCFEIRTT--TNVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQ 116 (117)
T ss_pred CCCcEEEEEec--CEEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhc
Confidence 57999999997 677888664 23455788888875
No 149
>KOG3520|consensus
Probab=25.67 E-value=2e+02 Score=31.29 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=32.6
Q ss_pred CCCeEEEEecCCC-eeEEEecCChhHHHHHHHHHHHHHhhcc
Q psy5716 24 RKHVLRLSSPSSN-TELLLQADDTLTMAHWIRDLQTHAIAQS 64 (294)
Q Consensus 24 rk~vf~l~~~~~g-~e~l~qa~~~~~~~~W~~~i~~~~~~~~ 64 (294)
+|-.|-|.+..+| .=|=+.|.+..|.+.|++.|+++++..+
T Consensus 684 ~ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~s~~ 725 (1167)
T KOG3520|consen 684 EKAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVASCP 725 (1167)
T ss_pred ccceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhCC
Confidence 4556777766344 4588999999999999999999887665
No 150
>KOG0268|consensus
Probab=25.50 E-value=29 Score=32.48 Aligned_cols=37 Identities=19% Similarity=0.365 Sum_probs=32.0
Q ss_pred CCcC-CCeEEEEecCCCeeEEEecCChhHHHHHHHHHHH
Q psy5716 21 YTKR-KHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT 58 (294)
Q Consensus 21 ~~kr-k~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~ 58 (294)
|+|| .|||.+.-. -.++|+|+..|+..+..|-+.-.+
T Consensus 311 htkRMq~V~~Vk~S-~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 311 HTKRMQHVFCVKYS-MDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred hHhhhheeeEEEEe-ccccEEEecCCCcceeeeecchhh
Confidence 6888 999999998 668999999999999999766544
No 151
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=23.99 E-value=2.7e+02 Score=19.69 Aligned_cols=53 Identities=21% Similarity=0.270 Sum_probs=38.7
Q ss_pred HHHHHHhhCCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHh-hCChhHHHHH
Q psy5716 197 LLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVH-ELPEHHFQTL 249 (294)
Q Consensus 197 lLK~fLreLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L 249 (294)
+||.+++.|-..--+.++-.+|......-+..+-...=++++. .+|...-.-|
T Consensus 1 ~LK~ii~~Lh~G~~~e~vk~~F~~~~~~Vs~~EI~~~Eq~Li~eG~~~eeiq~L 54 (71)
T PF04282_consen 1 ILKEIIKRLHEGEDPEEVKEEFKKLFSDVSASEISAAEQELIQEGMPVEEIQKL 54 (71)
T ss_pred CHHHHHHHHhCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 4788888888887777888888888777777776666677776 4777664433
No 152
>PF04316 FlgM: Anti-sigma-28 factor, FlgM; InterPro: IPR007412 FlgM binds and inhibits the activity of the transcription factor sigma 28. Inhibition of sigma 28 prevents the expression of genes from flagellar transcriptional class 3, which include genes for the filament and chemotaxis. Correctly assembled basal body-hook structures export FlgM, relieving inhibition of sigma 28 and allowing expression of class 3 genes. NMR studies show that free FlgM is mostly unfolded, which may facilitate its export. The C-terminal half of FlgM adopts a tertiary structure when it binds to sigma 28. All mutations in FlgM that prevent sigma 28 inhibition affect the C-terminal domain and is the region thought to constitute the binding domain. A minimal binding domain has been identified between Glu 64 and Arg 88 in Salmonella typhimurium (P26477 from SWISSPROT).The N-terminal portion remains unstructured and may be necessary for recognition by the export machinery [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0019861 flagellum; PDB: 1RP3_B 1SC5_B.
Probab=23.43 E-value=1.8e+02 Score=19.21 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHH
Q psy5716 162 NTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKS 200 (294)
Q Consensus 162 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~ 200 (294)
+..+|.+|++.++.|... .|...||.-+-.
T Consensus 26 r~~kV~~ik~~I~~G~Y~---------vd~~~iA~~ml~ 55 (57)
T PF04316_consen 26 RAEKVAEIKAAIASGTYK---------VDAEKIAEKMLD 55 (57)
T ss_dssp SHHHHHHHHHHHHTT--------------HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCC---------CCHHHHHHHHHh
Confidence 568999999999998654 566677766544
No 153
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=22.89 E-value=1.1e+02 Score=27.07 Aligned_cols=31 Identities=13% Similarity=0.239 Sum_probs=27.4
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHHHh
Q psy5716 231 MATIKKLVHELPEHHFQTLKYILQHLKRVVD 261 (294)
Q Consensus 231 ~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~ 261 (294)
+..++.....|++..+.+..|++.|...|..
T Consensus 4 ~~~i~~~~~~Lt~~e~~Ia~yil~n~~~v~~ 34 (284)
T PRK11302 4 LEKIQSRLEHLSKSERKVAEVILASPQTAIH 34 (284)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHhCHHHHHh
Confidence 4567788899999999999999999998876
No 154
>KOG3549|consensus
Probab=21.34 E-value=1.5e+02 Score=27.75 Aligned_cols=39 Identities=18% Similarity=0.323 Sum_probs=35.2
Q ss_pred CCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716 21 YTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA 60 (294)
Q Consensus 21 ~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~ 60 (294)
...|+|.|.+... +|....|+.+-..|+..|=++.|.+.
T Consensus 348 ~D~R~~CF~~qs~-~ge~~yfsVEl~seLa~wE~sfq~At 386 (505)
T KOG3549|consen 348 VDSRQHCFLLQSS-GGEPRYFSVELRSELARWENSFQAAT 386 (505)
T ss_pred cccccceEEEEcC-CCCceEEEEehhhHHHHHHHHHhhHH
Confidence 3579999999998 99999999999999999999998754
No 155
>TIGR03824 FlgM_jcvi flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.
Probab=20.73 E-value=1.7e+02 Score=21.56 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHhcCCCcCccCCCCCCcchHHHHHHHHHH
Q psy5716 162 NTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSF 201 (294)
Q Consensus 162 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~dv~~va~lLK~f 201 (294)
+..+|++|++.+..|... .|...||.-|-.|
T Consensus 64 ~~~kV~~ik~aI~~G~Y~---------vd~~~iA~~ml~~ 94 (95)
T TIGR03824 64 DAEKVAEIKAAIANGSYK---------VDAEKIADKLLDF 94 (95)
T ss_pred hHHHHHHHHHHHHcCCCC---------CCHHHHHHHHHhc
Confidence 568899999999998754 5777788766543
No 156
>PF13619 KTSC: KTSC domain
Probab=20.69 E-value=1.7e+02 Score=19.54 Aligned_cols=36 Identities=8% Similarity=0.040 Sum_probs=29.7
Q ss_pred ccCCcCCCeEEEEecCCCeeEEEecCChhHHHHHHHH
Q psy5716 19 CDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRD 55 (294)
Q Consensus 19 ~~~~krk~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~ 55 (294)
..|.-...++.|... +|..|..........++|+.+
T Consensus 9 v~Yd~~~~~L~V~F~-~G~~Y~Y~~Vp~~~~~~l~~A 44 (60)
T PF13619_consen 9 VGYDPETRTLEVEFK-SGSVYRYFGVPPEVYEALLNA 44 (60)
T ss_pred EeECCCCCEEEEEEc-CCCEEEECCCCHHHHHHHHcC
Confidence 357777789999998 999999999998888877653
No 157
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=20.19 E-value=2.5e+02 Score=24.59 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHhcC-CCcCccCCCCCCcchHHHHHHHHHHHhh---CCCCCCCcchHHHHHHhhcCC
Q psy5716 162 NTAAVSSLTEAVNKG-LDASVLEQDPRWSDVNVISSLLKSFFRR---LPDSLLTTELYPHFIQADKIE 225 (294)
Q Consensus 162 ~~~~i~~l~~~~~~~-~~~~~~~~~~~~~dv~~va~lLK~fLre---LP~pLi~~~~~~~~~~~~~~~ 225 (294)
|.+.+++||..+-.- .|..++. -|++++ +||.+.||. |=--|=..+.-++.+++...+
T Consensus 102 SAKvm~~ikavLgaTKiDLPVDI-----NDPYDl-GLLLRhLRHHSNLLAnIgdP~VreqVLsAMqEe 163 (238)
T PF02084_consen 102 SAKVMEDIKAVLGATKIDLPVDI-----NDPYDL-GLLLRHLRHHSNLLANIGDPEVREQVLSAMQEE 163 (238)
T ss_pred cHHHHHHHHHHhccccccccccc-----CChhhH-HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhhh
Confidence 678889999888542 2323333 456665 455556664 222222334455555554433
No 158
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=20.15 E-value=1.6e+02 Score=26.34 Aligned_cols=42 Identities=10% Similarity=0.039 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcccccCCCccchh
Q psy5716 227 PATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLA 274 (294)
Q Consensus 227 ~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLA 274 (294)
+..-+..++.....|++..+.+..|++.|-..|.. |++..||
T Consensus 12 ~~~i~~~i~~~~~~Lt~~e~~Ia~yil~~~~~v~~------~si~~lA 53 (292)
T PRK11337 12 GIGLGPYIRMKQEGLTPLESRVVEWLLKPGDLSEA------TALKDIA 53 (292)
T ss_pred chhHHHHHHHHHhhcCHHHHHHHHHHHhCHHHHHh------cCHHHHH
Confidence 34456788888999999999999999999888776 4555555
No 159
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=20.02 E-value=2.6e+02 Score=21.62 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=28.0
Q ss_pred CCeEEEEecCCCeeEEEecCChhHHHHHHHHHHHHH
Q psy5716 25 KHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA 60 (294)
Q Consensus 25 k~vf~l~~~~~g~e~l~qa~~~~~~~~W~~~i~~~~ 60 (294)
.++|-+.+. +...-|-|++.++..-|+.+|+..+
T Consensus 88 ~~si~i~t~--~R~L~l~a~s~~~~~~W~~aL~~L~ 121 (123)
T PF12814_consen 88 NKSIIIVTP--DRSLDLTAPSRERHEIWFNALRYLL 121 (123)
T ss_pred ceEEEEEcC--CeEEEEEeCCHHHHHHHHHHHHHHh
Confidence 346666654 7899999999999999999998754
Done!