RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5716
(294 letters)
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics
consortium, GTPase-activating protein, SGC, alternative
splicing, anti-oncogene; 2.80A {Homo sapiens}
Length = 246
Score = 191 bits (487), Expect = 2e-60
Identities = 55/226 (24%), Positives = 95/226 (42%), Gaps = 25/226 (11%)
Query: 87 SPRKSSATEATLPPSPKSKTWKGRVAKQFRRIQAGAGSPNSPHPPYPPGSNI-GVPLQHC 145
SS E + + + R + P SN GVPL
Sbjct: 4 HHHHSSGRENLYFQGDPRR--RNILRSLRRNTKKPKPKPRPSITKATWESNYFGVPLTTV 61
Query: 146 VSVNLLCPF------------------LFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPR 187
V+ P ++ RV GN + + SL ++ + + E+D
Sbjct: 62 VTPEKPIPIFIERCIEYIEATGLSTEGIY-RVSGNKSEMESLQRQFDQDHNLDLAEKD-- 118
Query: 188 WSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQ 247
VN ++ +KSFF LPD L+ + ++A KI D ++ +K+++ + P+ + +
Sbjct: 119 -FTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVLKKFPKENHE 177
Query: 248 TLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTMV 293
KY++ HL +V N++VN M + NL+I F PTL+R M +
Sbjct: 178 VFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMRPDFSTMDALT 223
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.80A {Homo sapiens}
Length = 202
Score = 187 bits (477), Expect = 2e-59
Identities = 47/137 (34%), Positives = 81/137 (59%), Gaps = 1/137 (0%)
Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
RV G + + + A ++ + + D+N+I+ LK +FR LP L+T + YP
Sbjct: 47 RVSGFSDLIEDVKMAFDRDGE-KADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPK 105
Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
FI++ KI DP ++ T+ + + LP H +TL+Y++ HLKRV + + N M A NL I+F
Sbjct: 106 FIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVF 165
Query: 278 GPTLVRAGDDNMVTMVS 294
GPTL+R+ + + + ++
Sbjct: 166 GPTLMRSPELDAMAALN 182
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH
domain, signaling protein; 2.40A {Gallus gallus} SCOP:
a.116.1.1
Length = 231
Score = 186 bits (474), Expect = 1e-58
Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 1/137 (0%)
Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLE-QDPRWSDVNVISSLLKSFFRRLPDSLLTTELYP 216
R+ G + V L + A+ E + ++ I+S LK++ R LP L+ +
Sbjct: 60 RIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQR 119
Query: 217 HFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIM 276
FI+A K+E+ +R++ I LVH LPE + Q L ++ HL +V DN + N M NL ++
Sbjct: 120 SFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVV 179
Query: 277 FGPTLVRAGDDNMVTMV 293
FGPTL+R ++ + ++
Sbjct: 180 FGPTLLRPQEETVAAIM 196
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein,
GTPase-activating protein for RHO family members,
structural genomics, NPPSFA; NMR {Homo sapiens} PDB:
2ee5_A
Length = 209
Score = 184 bits (470), Expect = 2e-58
Identities = 47/182 (25%), Positives = 84/182 (46%), Gaps = 22/182 (12%)
Query: 130 PPYPPGSNIGVPLQHCVSVNLLCPF------------------LFPRVPGNTAAVSSLTE 171
+ G+PLQ V+ P L+ RV GN ++ +
Sbjct: 5 SSGWESNYFGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLY-RVSGNKTDQDNIQK 63
Query: 172 AVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRM 231
++ + +++ + VN ++ LK+FF LPD L+ L+P ++A KI D R+
Sbjct: 64 QFDQDHNINLVSME---VTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERL 120
Query: 232 ATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVT 291
+K++V + ++ +Y++ HL RV ++N M A NL+I F PTL+R +N
Sbjct: 121 HALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMRPDFENREF 180
Query: 292 MV 293
+
Sbjct: 181 LS 182
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural
genomics consortium, signaling protein; 2.25A {Homo
sapiens}
Length = 214
Score = 184 bits (470), Expect = 3e-58
Identities = 47/136 (34%), Positives = 77/136 (56%), Gaps = 2/136 (1%)
Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
RV GN A + L VN+ + + D +W D++V++ LK FFR LP+ L +
Sbjct: 58 RVSGNLATIQKLRFIVNQ--EEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQ 115
Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
F++A K +D TR+ +K LV +LP + T+K + HL ++V + N M ++L I+F
Sbjct: 116 FVEAIKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVF 175
Query: 278 GPTLVRAGDDNMVTMV 293
GPTL+RA ++ +
Sbjct: 176 GPTLLRAENETGNMAI 191
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics
consortium (SGC), GAP, alternative splicing, cell
junction, cell membrane; 1.77A {Homo sapiens}
Length = 229
Score = 182 bits (465), Expect = 2e-57
Identities = 44/187 (23%), Positives = 80/187 (42%), Gaps = 18/187 (9%)
Query: 123 GSPNSPHPPYPPGSNIGVPL-QHCVSVNLLCPFLFP----------------RVPGNTAA 165
S + + G L +H ++ P + R+ G +
Sbjct: 7 HSSGRENLYFQGERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGIVDGIYRLSGVASN 66
Query: 166 VSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIE 225
+ L + L ++P D++ + SL K +FR LP+ LLT +LY F A
Sbjct: 67 IQRLRHEFDSE-HVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAA 125
Query: 226 DPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAG 285
R+ I ++ +LP H++TL+++++HL + D + M A+NLAI++ P L+R+
Sbjct: 126 TDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSK 185
Query: 286 DDNMVTM 292
Sbjct: 186 QIESACF 192
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition
state, gene regulation/signaling protein complex; HET:
GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A
2ngr_B*
Length = 242
Score = 181 bits (460), Expect = 3e-56
Identities = 57/212 (26%), Positives = 96/212 (45%), Gaps = 28/212 (13%)
Query: 99 PPSPKSKTWKGRVAKQFRRIQAGAGSPNSPHPPYPPGSNIGVPLQHCVS----------- 147
P+ K ++ A A P P PP P GV LQH
Sbjct: 7 LGIPRQVLKYDDFLKSTQKSPATAPKPMPPRPPLPNQQ-FGVSLQHLQEKNPEQEPIPIV 65
Query: 148 VNLLCPFL----------FPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSL 197
+ +L F R NT V + + N GL + ++++++ + +
Sbjct: 66 LRETVAYLQAHALTTEGIF-RRSANTQVVREVQQKYNMGLPVDFDQ----YNELHLPAVI 120
Query: 198 LKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLK 257
LK+F R LP+ LLT +LYPH + I++ R+ +++ LPE ++Q L+++ L
Sbjct: 121 LKTFLRELPEPLLTFDLYPHVVGFLNIDESQ-RVPATLQVLQTLPEENYQVLRFLTAFLV 179
Query: 258 RVVDNSEVNKMEARNLAIMFGPTLVRAGDDNM 289
++ +S+ NKM NLA++FGP L+ A D +
Sbjct: 180 QISAHSDQNKMTNTNLAVVFGPNLLWAKDAAI 211
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein,
structural genomics, structural genomics consortium,
SGC; HET: 7PE; 1.49A {Homo sapiens}
Length = 201
Score = 179 bits (456), Expect = 3e-56
Identities = 46/137 (33%), Positives = 69/137 (50%), Gaps = 4/137 (2%)
Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
R+ G V L E + +L + D++ I SLLK F R L + LLT L
Sbjct: 40 RISGCDRTVKELKEKFLRVKTVPLLSK---VDDIHAICSLLKDFLRNLKEPLLTFRLNRA 96
Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
F++A +I D +A + + V ELP+ + TL +++ HL+RV S KM+ NLA +F
Sbjct: 97 FMEAAEITDEDNSIAAMYQAVGELPQANRDTLAFLMIHLQRVAQ-SPHTKMDVANLAKVF 155
Query: 278 GPTLVRAGDDNMVTMVS 294
GPT+V N +
Sbjct: 156 GPTIVAHAVPNPDPVTM 172
>3msx_B RHO GTPase-activating protein 20; protein-proten complex,
transition state, protein BI; HET: GDP; 1.65A {Homo
sapiens}
Length = 201
Score = 176 bits (449), Expect = 3e-55
Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 22/185 (11%)
Query: 125 PNSPHPPYPPGSNIGVPLQHCVS-------VNLLCPFLFP---------RVPGNTAAVSS 168
P+SP P PG G+ L + V + FL R N +
Sbjct: 1 PSSPTSP-MPGQLFGISLPNICENDNLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRE 59
Query: 169 LTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPA 228
L E +N G++ + VI+S+LK F R +P S+ +++LY H++ +
Sbjct: 60 LKEKLNSGVEV-----HLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDE 114
Query: 229 TRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDN 288
++ T+++L+ +LP + L+Y+ L + +S N+M A NLA+ P+++ +
Sbjct: 115 EKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSILWPPASS 174
Query: 289 MVTMV 293
+
Sbjct: 175 SPELE 179
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 184 bits (468), Expect = 4e-55
Identities = 47/137 (34%), Positives = 81/137 (59%), Gaps = 1/137 (0%)
Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
RV G + + + A ++ + + D+N+I+ LK +FR LP L+T + YP
Sbjct: 308 RVSGFSDLIEDVKMAFDRDGE-KADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPK 366
Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
FI++ KI DP ++ T+ + + LP H +TL+Y++ HLKRV + + N M A NL I+F
Sbjct: 367 FIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVF 426
Query: 278 GPTLVRAGDDNMVTMVS 294
GPTL+R+ + + + ++
Sbjct: 427 GPTLMRSPELDAMAALN 443
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase,
transition state, GAP; HET: GDP; 1.65A {Homo sapiens}
SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Length = 198
Score = 172 bits (438), Expect = 1e-53
Identities = 42/132 (31%), Positives = 74/132 (56%), Gaps = 5/132 (3%)
Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
R NT V + + N GL + ++ +++ + +LK+F R LP+ LLT +LYPH
Sbjct: 49 RRSANTQVVREVQQKYNMGLPVDFDQ----YNALHLPAVILKTFLRELPEPLLTFDLYPH 104
Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
+ I D + R+ +++ LPE ++Q L+++ L ++ +S+ NKM NLA++F
Sbjct: 105 VVGFLNI-DESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVF 163
Query: 278 GPTLVRAGDDNM 289
GP L+ A D +
Sbjct: 164 GPNLLWAKDAAI 175
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium,
GTPase activation, SGC, alternative splicing, cytoplasm,
phosphoprotein; 2.30A {Homo sapiens}
Length = 228
Score = 165 bits (420), Expect = 1e-50
Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 4/137 (2%)
Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
R G + + +L + +D E ++ +LK +FR LP+ L+T +L
Sbjct: 59 RKSGVKSRIQALRQMNEGAIDCVNYE----GQSAYDVADMLKQYFRDLPEPLMTNKLSET 114
Query: 218 FIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMF 277
F+Q + R+ IK + LP+ + + L+ +L L V + N+M NLA+
Sbjct: 115 FLQIYQYVPKDQRLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCL 174
Query: 278 GPTLVRAGDDNMVTMVS 294
P+L
Sbjct: 175 APSLFHLNTLKRENSSP 191
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase,
tpase activating protein, CDC42, phosphoinositide
3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP:
a.116.1.1
Length = 216
Score = 164 bits (418), Expect = 2e-50
Identities = 30/138 (21%), Positives = 64/138 (46%), Gaps = 8/138 (5%)
Query: 158 RVPGNTAAVSSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPH 217
R + + ++ L + ++ + D DV+V++ K + LP+ ++ +Y
Sbjct: 48 RTQSS-SNLAELRQLLDCDTPSV----DLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSE 102
Query: 218 FIQ-ADKIEDPATRMATIKKLVH--ELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLA 274
I A +++ + +KKL+ +P ++ TL+Y+L+H ++ S N + AR L+
Sbjct: 103 MISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLS 162
Query: 275 IMFGPTLVRAGDDNMVTM 292
+F P L R +
Sbjct: 163 EIFSPMLFRFSAASSDNT 180
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics
consortium, GTPase activation, phosphoprotein,
polymorphism hydrolase activator, SGC; 2.30A {Homo
sapiens}
Length = 271
Score = 159 bits (403), Expect = 1e-47
Identities = 51/247 (20%), Positives = 89/247 (36%), Gaps = 26/247 (10%)
Query: 59 HAIAQSASESNISPASGQKNRKFASASTSPRKSSATEATLPPSPKSKTWKGRVAKQFRRI 118
H S+ N+ R R + K K +G+ ++
Sbjct: 3 HHHHHSSGRENLYFQGMWDQRLV-------RLALLQHLRAFYGIKVKGVRGQCDRRRHET 55
Query: 119 QAGA------GSPNSPHPPYPPGSNIGVP--LQHCVSV---NLLCPFLFPRVPGNTAAVS 167
A G P + P +P L + ++ LF R G+ +
Sbjct: 56 AATEIGGKIFGVPFNALPHSAVPEYGHIPSFLVDACTSLEDHIHTEGLF-RKSGSVIRLK 114
Query: 168 SLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDP 227
+L V+ G L I+ LLK FFR LP+ +L +L+ ++A ++
Sbjct: 115 ALKNKVDHGEG--CLSSA----PPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLGTE 168
Query: 228 ATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDD 287
+ L L +H L+Y L+ V S NKM++ NLA++F P L++ +
Sbjct: 169 E-KNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEG 227
Query: 288 NMVTMVS 294
+ +
Sbjct: 228 HEKMSSN 234
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural
genomics consortium, SGC, transferase; 2.09A {Homo
sapiens}
Length = 214
Score = 136 bits (345), Expect = 1e-39
Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 3/111 (2%)
Query: 184 QDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPE 243
D D ++ +KSF LP L+T E +A + A LP
Sbjct: 76 SDVDQWDTAALADGIKSFLLALPAPLVTPEASAEARRALREAAGPVGPA---LEPPTLPL 132
Query: 244 HHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTMVS 294
H TL+++LQHL RV + R L FGP L+RA
Sbjct: 133 HRALTLRFLLQHLGRVARRAPALGPAVRALGATFGPLLLRAPPPPSSPPPG 183
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1,
RAB gtpases, APPL1, endocytic PATH golgi complex,
hydrolase-protein binding complex; 2.30A {Homo sapiens}
PDB: 2qv2_A
Length = 366
Score = 138 bits (348), Expect = 2e-38
Identities = 32/186 (17%), Positives = 65/186 (34%), Gaps = 30/186 (16%)
Query: 125 PNSPHPPYPPGSNIGVPLQHCVS---------VNLLCPFLFP---------RVPGNTAAV 166
VPL S + LL LF + PG +
Sbjct: 171 EEDSFLEKEKSLLQMVPLDEGASERPLQVPKEIWLLVDHLFKYACHQEDLFQTPGMQEEL 230
Query: 167 SSLTEAVNKGLDASVLEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIED 226
+ + ++ + + + ++ L F LP+ ++ ELY + +
Sbjct: 231 QQIIDCLDTSIP------ETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDS----- 279
Query: 227 PATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGD 286
A ++++ +LP H +Y++ L+ ++ SE N + A +A +F L+R
Sbjct: 280 -AYDPRICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPPP 338
Query: 287 DNMVTM 292
+ M
Sbjct: 339 NLMARQ 344
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21,
myristate, transport, nucleotide-binding, rhogap
protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dhj_A
Length = 168
Score = 60.6 bits (146), Expect = 2e-11
Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 2/103 (1%)
Query: 8 IDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASE 67
I + ++++ TKRK+V RL++ + E L QA+D M WI+ +Q +
Sbjct: 60 ISVNACLIDISYSETKRKNVFRLTTS--DCECLFQAEDRDDMLAWIKTIQESSNLNEEDT 117
Query: 68 SNISPASGQKNRKFASASTSPRKSSATEATLPPSPKSKTWKGR 110
+ + K + S + S + +
Sbjct: 118 GVTNRDLISRRIKEYNNLMSKAEQLPKTPRQSLSIRQTLLGAK 160
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP:
b.55.1.1
Length = 122
Score = 57.7 bits (139), Expect = 8e-11
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 8 IDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQS 64
D+ + +E+A DYTK+KHVLR+ + LLQA D M+ W+ L+ + + +
Sbjct: 67 YDLQNAAIEIASDYTKKKHVLRVKLANGA-LFLLQAHDDTEMSQWVTSLKAQSDSTA 122
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural
genomics, spectrin beta chain, brain 2, KIAA0302; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 123
Score = 54.2 bits (130), Expect = 1e-09
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 8 IDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASE 67
+ + VA DY KRKHV +L E L QA D M+ W+R + AIA S
Sbjct: 65 VSLARAQGSVAFDYRKRKHVFKLGLQ-DGKEYLFQAKDEAEMSSWLRVVNA-AIASGPSS 122
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex,
pleckstrin homology domain, ligand binding protein; HET:
I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Length = 129
Score = 53.4 bits (128), Expect = 3e-09
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 8 IDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQ 63
+D+ + + R++VL + + E LLQ+D + W R L+T I +
Sbjct: 72 VDLRGAALAHGRHLSSRRNVLHIRTI-PGHEFLLQSDHETELRAWHRALRT-VIER 125
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 5e-09
Identities = 51/355 (14%), Positives = 106/355 (29%), Gaps = 121/355 (34%)
Query: 33 PSSNTELLL----------------QADDTLTMA--HWIRD-LQT---HAIAQSASESNI 70
P++ EL+ Q D L + + L+ HA+A + N
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 71 SPASGQKN--RKFASA---STSPRKSSATEATLPPSPKSKTWKGRVAKQFRRIQAGAGSP 125
+ K + + +A + P + A + ++ F G G+
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA---QLVAIF----GGQGNT 166
Query: 126 NSP-------HPPYPPG-----SNIGVPLQHCVSVNLLCPFLFPR-------------VP 160
+ + Y L + L +F + P
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 161 GN----TAAVS----SLTEAVNKGLDASVLEQDP-------RWSDV---NVISSLL---- 198
+ +S + + + + A +L P + + +++++
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 199 ---KSFFRRLPDSL--L------TTELYPHF-----IQADKI---EDPATRMATIKKLVH 239
+SFF + ++ L E YP+ I D + E + M +I L
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL-- 344
Query: 240 ELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTMVS 294
T + + ++ + NS + + + I +LV G N+V VS
Sbjct: 345 --------TQEQVQDYVNKT--NSHLP--AGKQVEI----SLVN-GAKNLV--VS 380
Score = 39.3 bits (91), Expect = 0.001
Identities = 32/262 (12%), Positives = 70/262 (26%), Gaps = 112/262 (42%)
Query: 30 LSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASESNISPASGQKNRKFASASTSP- 88
++ S + +T+ +I ++ + ++ +++ P+ + + + SP
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFI-GVRCY---EAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 89 -------RKS-----SATEATLPPS-------------------PKSKTWKGRVAKQFRR 117
++ + T + LP P+S + R+
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY---GLNLTLRK 395
Query: 118 IQAGAGS-----PNS---------------P-HPPY--P----------------PGSNI 138
+A +G P S P H P +I
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI 455
Query: 139 GVP---------LQHCVS------VNLLC--PFLFPRV------------PGNTAAVSSL 169
+P L+ V+ + P + PG + + L
Sbjct: 456 QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVL 515
Query: 170 TEAVNKG-----LDASVLEQDP 186
T G + A L+ +P
Sbjct: 516 THRNKDGTGVRVIVAGTLDINP 537
Score = 33.9 bits (77), Expect = 0.070
Identities = 46/288 (15%), Positives = 87/288 (30%), Gaps = 89/288 (30%)
Query: 50 AHWIRDLQ-TH-AIAQS--ASESNISPASGQKNRKFASASTSPRKSSATEATLPPSPKSK 105
A+ R L +H ++ ++ AS Q +F P + A + P +P
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFIAS-QLQEQFNKILPEPTEGFAADDE-PTTPAEL 60
Query: 106 TWK--GRVAKQFRRIQAGAGSP------NSPHPPYPPGSNIGVPLQHCVSVNLLCP---- 153
K G V+ + G Y G++I H ++ LL
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-----HALAAKLLQENDTT 115
Query: 154 ---------------FLFPRVPGNTAAVSSLTEAVNKGLDASV-------------LE-- 183
+ R P + + S+L AV +G +A + E
Sbjct: 116 LVKTKELIKNYITARIMAKR-PFDKKSNSALFRAVGEG-NAQLVAIFGGQGNTDDYFEEL 173
Query: 184 QD------PRWSD-VNVISSLLKSFFRRLPDSLLTTELYPHFIQADK-IEDPATR----- 230
+D D + + L R D+ +++ + + +E+P+
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDA---EKVFTQGLNILEWLENPSNTPDKDY 230
Query: 231 MATI---------KKLVHEL---------PEHHFQTLKYILQHLKRVV 260
+ +I +L H + P LK H + +V
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1;
guanine nucleotide exchange factor, guanine-nucleotide
releasing factor, lipoprotein; 4.50A {Mus musculus}
Length = 279
Score = 54.6 bits (130), Expect = 8e-09
Identities = 25/207 (12%), Positives = 56/207 (27%), Gaps = 8/207 (3%)
Query: 5 CERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQS 64
+ + ++ V+ ++ K+ V LS+ L Q + +WI + + A
Sbjct: 69 KHAVWVENSIVQAVPEHPKKDFVFCLSNS-LGDAFLFQTTSQTELENWITAIHSACAAAV 127
Query: 65 ASESN------ISPASGQKNRKFASASTSPRKSSATEATLPPSPKSKTWKGRVAKQFRRI 118
A + + + +K + +K + + K K + +
Sbjct: 128 ARHHHKEDTLRLLKSEIKKLEQKIDMDEKMKKMGEMQLSSVTDSKKKKTILDQIFVWEQN 187
Query: 119 QAGAGSPNSPHPPYPPGSNIGVPLQHCVSVNLLCPFLFPRVPGNTAAVSSLTEAVNKGLD 178
Y G L + + G S +
Sbjct: 188 LEQFQMDLFRFRCYLASLQGG-ELPNPKRLLAFASRPTKVAMGRLGIFSVSSFHALVAAR 246
Query: 179 ASVLEQDPRWSDVNVISSLLKSFFRRL 205
+ R ++ +S +S F L
Sbjct: 247 TGEIGVRRRTQAMSRSASKRRSRFSSL 273
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator,
pleckstrin homology domain, STR genomics consortium,
SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Length = 124
Score = 51.4 bits (123), Expect = 1e-08
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 8 IDIGHNCVEVAC-DYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQ 63
+++ + A D + RK+VL L S +E L+Q D ++ W + + I +
Sbjct: 70 VELRGATLSWAPKDKSSRKNVLELRSR-DGSEYLIQHDSEAIISTWHKAIAQ-GIQE 124
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus
musculus} SCOP: b.55.1.1 PDB: 1mph_A
Length = 106
Score = 50.7 bits (121), Expect = 2e-08
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 12 HNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT 58
EVA DY K+KHV +L N E L QA D M WI+ + +
Sbjct: 60 EAICEVALDYKKKKHVFKLRLSDGN-EYLFQAKDDEEMNTWIQAISS 105
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine
nucleotide exchange factor, alternative splicing, cell
projection, coiled coil; 2.10A {Mus musculus} PDB:
3a8q_A
Length = 263
Score = 49.6 bits (117), Expect = 3e-07
Identities = 15/116 (12%), Positives = 45/116 (38%), Gaps = 7/116 (6%)
Query: 8 IDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASE 67
+ + V+ ++ K++HV LS+ L QA + +W+ + + + A +
Sbjct: 72 LFAEDSIVQSVPEHPKKEHVFCLSNSC-GDVYLFQATSQTDLENWVTAIHSACASLFAKK 130
Query: 68 SN------ISPASGQKNRKFASASTSPRKSSATEATLPPSPKSKTWKGRVAKQFRR 117
+ + + + + +K + + ++ PK++ +Q+ +
Sbjct: 131 HGKEDTVRLLKSQTRSLLQKIDMDSKMKKMAELQLSVVSDPKNRKAIENQIRQWEQ 186
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein
binding, structural genomics, NPPSFA; 1.70A {Mus
musculus}
Length = 126
Score = 45.0 bits (106), Expect = 3e-06
Identities = 7/63 (11%), Positives = 18/63 (28%), Gaps = 1/63 (1%)
Query: 4 SCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQ 63
+++ I + D + + +L++P Q W + L +
Sbjct: 56 PGKKVSI-VGWMVQLPDDPEHPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDACKSS 114
Query: 64 SAS 66
Sbjct: 115 RPQ 117
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein,
pleckstrin homology domain, cellular signaling,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 136
Score = 39.5 bits (91), Expect = 3e-04
Identities = 8/42 (19%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 16 EVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQ 57
+ + ++ + L + E +L+ D+L W+ D+Q
Sbjct: 86 TMPLEMPEKDNTFVLKV-ENGAEYILETIDSLQKHSWVADIQ 126
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain,
BAR-PH domain, protein transpo; 2.05A {Homo sapiens}
PDB: 2z0o_A 2elb_A
Length = 385
Score = 38.4 bits (88), Expect = 0.002
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 2 TGSCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI 61
+DI NC +A D R++ +++S +LQA+ WI + +
Sbjct: 317 VAGGLAMDI-DNCSVMAVDCEDRRYCFQITSFDGKKSSILQAESKKDHEEWICTIN-NIS 374
Query: 62 AQSASESN 69
Q N
Sbjct: 375 KQIYLSEN 382
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain,
pleckstrin homology domain-containing protein family A
member 5; NMR {Homo sapiens}
Length = 128
Score = 36.7 bits (85), Expect = 0.002
Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 14 CVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASESN 69
+ + D+ RK+ + + P+ T D M W++ + A+ Q++ S+
Sbjct: 73 ALLTSEDHINRKYAFKAAHPNMRT-YYFCTDTGKEMELWMKAMLDAALVQTSGPSS 127
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.002
Identities = 30/160 (18%), Positives = 47/160 (29%), Gaps = 39/160 (24%)
Query: 149 NLLCPFLF-PRVPGNTAAVSS--------------LTEAVNKGLDASVLEQD----PRWS 189
NL C L R T +S+ LT K L L+ PR
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-- 320
Query: 190 DVNVISSLLKSFF-RRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHF-- 246
+V + S + D L T + + H + DK+ +++ L F
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKH-VNCDKLTT--IIESSLNVLEPAEYRKMFDR 377
Query: 247 ------------QTLKYILQHLKRVVDNSEVNKMEARNLA 274
L I + + VNK+ +L
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA,
SKIP, complex, virulence, cytoplasm, membrane,
polymorphism, signaling protein; 2.60A {Homo sapiens}
PDB: 3hw2_B
Length = 112
Score = 36.3 bits (84), Expect = 0.002
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 11 GHNCVEV-ACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASESN 69
G C + T R H ++ L L A+ MA W++ L A+++
Sbjct: 51 GEQCGGCRRANTTDRPHAFQVILSD-RPCLELSAESEAEMAEWMQHLC-QAVSKGVIPQG 108
Query: 70 ISPA 73
++P+
Sbjct: 109 VAPS 112
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 115
Score = 36.2 bits (84), Expect = 0.002
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 8 IDIGHNC-VEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSAS 66
I + NC VE D +K + + + A D WI+ + + I
Sbjct: 51 ILLDENCCVESLPDKDGKKCLFLVKCFDKT--FEISASDKKKKQEWIQAIHS-TI-HLLK 106
Query: 67 ESNISPASG 75
+ P+SG
Sbjct: 107 LGSSGPSSG 115
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH
domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 117
Score = 36.2 bits (84), Expect = 0.002
Identities = 13/59 (22%), Positives = 17/59 (28%), Gaps = 2/59 (3%)
Query: 11 GHNCVEV-ACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASES 68
V D RKH + T A+ WI+ + A QS S
Sbjct: 59 SFRVAAVQPSDNISRKHTFKAEHAGVRT-YFFSAESPEEQEAWIQAMGEAARVQSGPSS 116
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 107
Score = 35.2 bits (81), Expect = 0.005
Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 9/64 (14%)
Query: 12 HNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASESNIS 71
C V + R+ L+A + M HW+ L SES
Sbjct: 53 VGCEVVPDPSPDHLYSFRILHKGEEL-AKLEAKSSEEMGHWLGLLL--------SESGSG 103
Query: 72 PASG 75
P+SG
Sbjct: 104 PSSG 107
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain,
PIP2 binding site, structural genomics; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 126
Score = 35.3 bits (81), Expect = 0.006
Identities = 9/65 (13%), Positives = 19/65 (29%), Gaps = 6/65 (9%)
Query: 14 CVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQS---ASESNI 70
+ + ++ +DD W++ + A QS +
Sbjct: 65 YTDPQPGLEGGRAFFNAVKEGDT--VIFASDDEQDRILWVQAMYR-ATGQSHKPVPPTQS 121
Query: 71 SPASG 75
P+SG
Sbjct: 122 GPSSG 126
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 113
Score = 35.0 bits (81), Expect = 0.006
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 8 IDIGHNCVEVAC-DYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSAS 66
I + + + C D+ KR V ++++ + QA W+RD+
Sbjct: 48 IPLKGSTLTSPCQDFGKRMFVFKITTTK-QQDHFFQAAFLEERDAWVRDINKAIKCIEGL 106
Query: 67 ES 68
E
Sbjct: 107 EH 108
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4;
pleckstrin homoloy domain, signal transduction,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 109
Score = 33.9 bits (78), Expect = 0.013
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 14 CVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSAS 66
V + D V +L + +ADD + WI Q ++ +S
Sbjct: 57 TVTLVKDENSESKVFQLLHKGM-VFYVFKADDAHSTQRWIDAFQEGTVSGPSS 108
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain,
zizimin1, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 150
Score = 33.8 bits (77), Expect = 0.024
Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 8/86 (9%)
Query: 8 IDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASE 67
I + +C+ V + R+ L ++ LL AD + M WI L +
Sbjct: 73 IFL-DSCMGVVQNNKVRRFAFELKMQDKSS-YLLAADSEVEMEEWITIL------NKILQ 124
Query: 68 SNISPASGQKNRKFASASTSPRKSSA 93
N A +K + SS
Sbjct: 125 LNFEAAMQEKRNGDSHEDDESGPSSG 150
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH
domain, phret1, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 130
Score = 33.4 bits (76), Expect = 0.025
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Query: 1 MTGSCERIDIGHNCVEVACDYTK-RKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQ-- 57
+ + I +G C +V + R +L ++ + L L A+ W L
Sbjct: 54 IHFNVRDIKVGQECQDVQPPEGRSRDGLLTVNLREGSR-LHLCAETRDDAIAWKTALMEA 112
Query: 58 THAIAQSASESNISPASG 75
A + + P+SG
Sbjct: 113 NSTPAPAGATVPSGPSSG 130
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction;
1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Length = 123
Score = 33.2 bits (76), Expect = 0.031
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 1/61 (1%)
Query: 14 CVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASESNISPA 73
+ R+ P T +L AD + W+R L + A+
Sbjct: 63 RPDGPGAPRGRRFTFTAEHPGMRT-YVLAADTLEDLRGWLRALGRASRAEGDDYGQPRSP 121
Query: 74 S 74
+
Sbjct: 122 A 122
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel
beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo
sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 32.9 bits (75), Expect = 0.032
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 1 MTGSCERIDIGHNCVEVAC-DYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQ 57
M C I G C + D + +L++ + L A+ T W LQ
Sbjct: 51 MPMDCINIRTGQECRDTQPPDGKSKDCMLQIVCRD-GKTISLCAESTDDCLAWKFTLQ 107
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain,
PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 122
Score = 32.4 bits (74), Expect = 0.047
Identities = 11/54 (20%), Positives = 15/54 (27%), Gaps = 2/54 (3%)
Query: 11 GHNCVEV-ACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQ 63
V D RKH + T A+ WI+ + A Q
Sbjct: 70 SFRVAAVQPSDNISRKHTFKAEHAGVRT-YFFSAESPEEQEAWIQAMGEAARVQ 122
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides;
pleckstrin, inositol tetrakisphosphate signal
transduction protein, adaptor protein; HET: 4IP; 1.80A
{Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Length = 126
Score = 32.4 bits (74), Expect = 0.050
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 8 IDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASE 67
+D+ +R + L P L A + WI+ L+ ++Q +
Sbjct: 61 LDLTECSAVQFDYSQERVNCFCLVFPFRT--FYLCAKTGVEADEWIKILRW-KLSQIRKQ 117
Query: 68 SN 69
N
Sbjct: 118 LN 119
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 149
Score = 32.8 bits (74), Expect = 0.065
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 6 ERIDI-GHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQS 64
+++DI C+ K L P E+ L+ ++T + W + T
Sbjct: 59 DKLDIVDLTCLTEQNSTEKNCAKFTLVLP--KEEVQLKTENTESGEEWRGFILTVTELSV 116
Query: 65 ASESNISP 72
++ P
Sbjct: 117 PQNVSLLP 124
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual
dimerization induced by V derived sequence, signaling
protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Length = 148
Score = 32.2 bits (73), Expect = 0.089
Identities = 11/89 (12%), Positives = 24/89 (26%), Gaps = 7/89 (7%)
Query: 8 IDIGHNCVEVAC---DYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQS 64
I V + K+ + +P A W++ L+
Sbjct: 64 FAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRI-YQFTAASPKDAEEWVQQLKF---ILQ 119
Query: 65 ASESNISPASGQKNRKFASASTSPRKSSA 93
S++ P ++ + P S+
Sbjct: 120 DLGSDVIPEDDEERGELYDDVDHPAAVSS 148
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 129
Score = 31.4 bits (71), Expect = 0.13
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 4 SCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQ 63
+ N V + ++ ++ + +T +QA A WI ++
Sbjct: 68 GSLVSALEDNGVPTGVKGNVQGNLFKVITKD-DTHYYIQASSKAERAEWIEAIKKLTSGP 126
Query: 64 S 64
S
Sbjct: 127 S 127
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Length = 228
Score = 32.3 bits (73), Expect = 0.15
Identities = 11/97 (11%), Positives = 28/97 (28%), Gaps = 5/97 (5%)
Query: 8 IDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASE 67
+++ + E+ + T +++ + + L A+ + W L + + E
Sbjct: 106 VEV-RSAKEIIDN-TNKENGIDIIMADRT--FHLIAESPEDASQWFSVLS-QVHSSTDQE 160
Query: 68 SNISPASGQKNRKFASASTSPRKSSATEATLPPSPKS 104
+ S + P P S
Sbjct: 161 IREMHDEQANPQNAVGTLDVGLIDSVCASDSPDRPNS 197
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; PH domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 31.0 bits (70), Expect = 0.18
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Query: 1 MTGSCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA 60
T + + + +V + + K L S N QA+D WI L +
Sbjct: 44 ATSNRQPAKLNLLTCQVKPN-AEDKKSFDLISH--NRTYHFQAEDEQDYVAWISVLTN-S 99
Query: 61 IAQSASESNISPASG 75
++ + + P+SG
Sbjct: 100 KEEALTMAFSGPSSG 114
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 32.3 bits (73), Expect = 0.22
Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 1/84 (1%)
Query: 182 LEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHEL 241
L D + ++S++ L L P F+ K E P R+ I L
Sbjct: 332 LVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVN 391
Query: 242 PEHHFQTL-KYILQHLKRVVDNSE 264
+ L + +L + + ++++
Sbjct: 392 EVIGIRQLSQSLLPAIVELAEDAK 415
Score = 30.4 bits (68), Expect = 0.83
Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 7/100 (7%)
Query: 182 LEQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLV--- 238
L D +S L F + L + +E+ P F E + R+ ++ V
Sbjct: 172 LCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIA 231
Query: 239 HELPEHHFQTLKYILQHLKRVVDNS--EVNKMEARNLAIM 276
LP+ + ++ L++ ++ V M A +
Sbjct: 232 QLLPQEDLEA--LVMPTLRQAAEDKSWRVRYMVADKFTEL 269
>2d9x_A Oxysterol binding protein-related protein 11; PH domain,
OSBP-related protein 11, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 120
Score = 30.6 bits (69), Expect = 0.24
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 12 HNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA--IAQSASESN 69
V D + H +++ S L+A D HW+ LQ ++ ++N
Sbjct: 58 AGAVISPSD--EDSHTFTVNAASGEQ-YKLRATDAKERQHWVSRLQICTQHHTEAIGKNN 114
Query: 70 ISPASG 75
P+SG
Sbjct: 115 SGPSSG 120
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain,
signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Length = 108
Score = 30.1 bits (68), Expect = 0.24
Identities = 9/54 (16%), Positives = 16/54 (29%), Gaps = 4/54 (7%)
Query: 8 IDIGHNCVEVAC---DYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT 58
I V +A +K++ L+S T A W+ +
Sbjct: 50 FLIKGYSVRMAPHLRRDSKKESCFELTSQDRRT-YEFTATSPAEARDWVDQISF 102
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid
degradation, phosphatidylinositol (3, 4)-bisphosphate,
signalling; HET: CIT; 1.40A {Homo sapiens} SCOP:
b.55.1.1
Length = 125
Score = 30.5 bits (69), Expect = 0.29
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 8 IDIGHNCVEVAC---DYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQS 64
I + C D R ++ + + S +QAD M WI+ + +AQ
Sbjct: 57 IPLKEVHKVQECKQSDIMMRDNLFEIVTTSRT--FYVQADSPEEMHSWIKAVSGAIVAQR 114
Query: 65 ASESNIS 71
+ S
Sbjct: 115 GPGRSAS 121
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 137
Score = 30.4 bits (68), Expect = 0.32
Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 15 VEVACDYTKRKHVLRLSSPSS--NTELLLQADDTLTMAHWIRDLQTHAIAQSASES 68
V + + +K ++L PS +E+ L+ D A W+ + + ++ ++S
Sbjct: 64 VVPDVNVSGQKFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLASKGRTMADS 119
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Length = 129
Score = 29.4 bits (66), Expect = 0.65
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 11/73 (15%)
Query: 8 IDIGHNCVEVACD-----YTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA 62
I + V ++ +++ + + LQA WI+ AI
Sbjct: 63 IHLRGCVVTSVESNSNGRKSEEENLFEIITAD-EVHYFLQAATPKERTEWIK-----AIQ 116
Query: 63 QSASESNISPASG 75
++ P+SG
Sbjct: 117 MASRTGKSGPSSG 129
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus
norvegicus} SCOP: a.87.1.1 b.55.1.1
Length = 402
Score = 30.6 bits (69), Expect = 0.67
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 25 KHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASESNISPASGQKNRKFASA 84
K+ +L + + L A W+R + + I + ++ A
Sbjct: 327 KNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFRE-ERKMVQEDEKIGFEISENQKR--QA 383
Query: 85 STSPRKSSATEAT 97
+ + RK+S + T
Sbjct: 384 AMTVRKASKQKVT 396
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 112
Score = 28.8 bits (64), Expect = 0.95
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Query: 15 VEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSAS 66
V + HV +L + L A W+ L T A + +S
Sbjct: 62 VPDPEERLDSGHVWKLQW--AKQSWYLSASSAELQQQWLETLSTAAHSGPSS 111
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 28.5 bits (64), Expect = 0.97
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 8 IDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASE 67
ID+ C + + + +PS + L+A M +W++ LQ S
Sbjct: 55 IDLSS--AVFDCKADAEEGIFEIKTPSR--VITLKAATKQAMLYWLQQLQMKRWEFHNSP 110
Query: 68 SN-ISPASG 75
P+SG
Sbjct: 111 PAPSGPSSG 119
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide,
pleckst homology domain, guanine-nucleotide releasing
factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus
musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Length = 347
Score = 29.6 bits (66), Expect = 1.2
Identities = 12/98 (12%), Positives = 24/98 (24%), Gaps = 25/98 (25%)
Query: 6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTE--------------------LLLQADD 45
I N + ++ + L +PS + + A
Sbjct: 253 RGIIPLENLSIREVEDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPS 312
Query: 46 TLTMAHWIRDLQTHAIAQSASESNISPASGQKNRKFAS 83
W++ I S S + R+ A+
Sbjct: 313 PEEKEEWMKS-----IKASISRDPFYDMLATRKRRIAN 345
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH
domain, lipid-binding, membrane, membrane protein; 1.90A
{Homo sapiens} PDB: 2kcj_A
Length = 103
Score = 28.2 bits (63), Expect = 1.3
Identities = 7/48 (14%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 25 KHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASESNISP 72
+ L P ++A + W+ L + S +++ + P
Sbjct: 58 NTRMELIIPGEQH-FYMKAVNAAERQRWLVALGSS--KASLTDTRLVP 102
>3bbo_5 Ribosomal protein L35; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 159
Score = 28.5 bits (63), Expect = 1.6
Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 2/90 (2%)
Query: 28 LRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASESNISPASGQKNRKFASASTS 87
L LS PS+ T ++ + + S S S + P + R S+
Sbjct: 17 LSLSPPSTRCSAAQGISLT-HFNKQLKSTLNLSSSSSISSSKVQPIVLKNKRISTVDSSV 75
Query: 88 PRKSSATEATLPPSPKSKTWKGRVAKQFRR 117
S + K KT K AK+FR
Sbjct: 76 STSSPSFTVFAAKGYKMKTHKA-SAKRFRV 104
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH
domain, signaling protein; 2.60A {Mus musculus} SCOP:
b.55.1.1 PDB: 2otx_A
Length = 211
Score = 28.6 bits (63), Expect = 1.8
Identities = 7/54 (12%), Positives = 14/54 (25%), Gaps = 4/54 (7%)
Query: 8 IDIGHNCVEVAC---DYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT 58
I V + K+ + +P A W++ L+
Sbjct: 153 FAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRI-YQFTAASPKDAEEWVQQLKF 205
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 117
Score = 27.8 bits (62), Expect = 1.9
Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 11/72 (15%)
Query: 4 SCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQ 63
E + G A K + + A D + W+ +Q+ ++
Sbjct: 57 EVEAVAPGT-PTIGAPKTVDEKAFFDVKTT--RRVYNFCAQDVPSAQQWVDRIQS-CLSS 112
Query: 64 SASESNISPASG 75
P+SG
Sbjct: 113 -------GPSSG 117
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin
homology domain, structural genomics; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 132
Score = 28.0 bits (62), Expect = 2.1
Identities = 6/61 (9%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 6 ERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSA 65
+I I V + + ++ + +++ ++ W+ L + +
Sbjct: 72 GKIPIAGMVVNRLDEIEGSDCMFEITGSTVER-IVVHCNNNQDFQEWMEQLNRLTKSGPS 130
Query: 66 S 66
S
Sbjct: 131 S 131
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL;
1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A*
1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A*
2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B*
3b9j_A* 1fiq_A*
Length = 1332
Score = 29.1 bits (65), Expect = 2.2
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 231 MATIKKLVHELPEHHFQTLKYILQHLKRV 259
T+ + V +LP + + +L+ L+
Sbjct: 309 EKTLLEAVAKLPTQKTEVFRGVLEQLRWF 337
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting
protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding
protein, protein binding; 2.25A {Homo sapiens} PDB:
2pom_A 2pop_A
Length = 401
Score = 28.8 bits (64), Expect = 2.3
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 5/81 (6%)
Query: 13 NCVEVACDYTKRKHVLRLSSPSSNTELLLQADD-TLTMAHWIRDLQTHAIAQSASESNIS 71
+ D KR H +S + +D TL +R+ S + +
Sbjct: 325 AVAQAVVDRVKRIHSDTFASGGERARFCPRHEDMTLL----VRNFGYPLGEMSQPTPSPA 380
Query: 72 PASGQKNRKFASASTSPRKSS 92
PA+G + + +S + +S
Sbjct: 381 PAAGGRVYPVSVPYSSAQSTS 401
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH
domains (ARAP) 2, PH domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 115
Score = 26.6 bits (59), Expect = 4.3
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 8/70 (11%)
Query: 8 IDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSAS- 66
I + V + + + + + + + WI L +QS +
Sbjct: 52 IPLSA-ISTVR---VQGDNKFEVVTTQRT--FVFRVEKEEERNDWISILLNALKSQSLTS 105
Query: 67 -ESNISPASG 75
P+SG
Sbjct: 106 QSQASGPSSG 115
>3uek_A Poly(ADP-ribose) glycohydrolase; mammalian PArg, macrodomain; 1.95A
{Rattus norvegicus} PDB: 3uel_A*
Length = 588
Score = 27.9 bits (61), Expect = 4.5
Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 4/76 (5%)
Query: 62 AQSASESNISPASGQKNRKFASASTSPRKSSATEATLPPSPKSKTWKGRVAKQFRRIQAG 121
++ P S K ++ + + P P K W G ++ R++
Sbjct: 20 SKITDHFVRIPKSEDKRKEQCEVRHQRAERKIPKYVPPNLPPDKKWLGTPIEEMRKMPRC 79
Query: 122 AGSPNSPHPPYPPGSN 137
P P ++
Sbjct: 80 G----VRLPLLRPSAS 91
>3la4_A Urease; JACK bean, hydrolase, ME binding, nickel; HET: CME KCX;
2.05A {Canavalia ensiformis}
Length = 840
Score = 27.9 bits (62), Expect = 5.3
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 4/76 (5%)
Query: 221 ADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPT 280
AD + A + + H + K + + + A +GPT
Sbjct: 228 ADGPVNETNLEAAMHAVR-SKGFGHEEEKDASEGFTKEDPNCPFNTFIHRKEYANKYGPT 286
Query: 281 ---LVRAGDDNMVTMV 293
+R GD N++ +
Sbjct: 287 TGDKIRLGDTNLLAEI 302
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG,
transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Length = 157
Score = 26.8 bits (60), Expect = 6.1
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 59 HAIAQSASESNIS 71
I+ S N+S
Sbjct: 118 RMISYGGSNYNVS 130
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 7.1
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 6/29 (20%)
Query: 247 QTLKYILQHLKRVVDNSEVNKMEARNLAI 275
Q LK + LK D+S A LAI
Sbjct: 20 QALKKLQASLKLYADDS------APALAI 42
Score = 26.1 bits (56), Expect = 9.4
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 23 KRKHVLRLSSPSSNTELLLQA 43
K + L+L + S L ++A
Sbjct: 24 KLQASLKLYADDSAPALAIKA 44
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum
aerophilum} SCOP: a.127.1.1
Length = 403
Score = 27.2 bits (61), Expect = 7.9
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 241 LPEHHFQTLKYILQHLKRVVDNSEVN--KMEARNLAIMFG 278
+PE L IL RV+ N ++ ++ NL
Sbjct: 313 IPEA-LLALDEILTSALRVLKNVYIDEERIT-ENLQKALP 350
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 27.2 bits (60), Expect = 8.2
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 25 KHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAI--AQSASESNISPASGQKNRKFA 82
K+ RL ++ LL W++ Q E+ S Q+ +
Sbjct: 404 KNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFAR-EREQVQLDQETGFSITELQRKQAML 462
Query: 83 SAS 85
+AS
Sbjct: 463 NAS 465
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis;
2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Length = 444
Score = 26.9 bits (60), Expect = 8.8
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 241 LPEHHFQTLKYILQHLKRVVDNSEVN--KMEARNLAIMFG 278
LP+ L Y+L +V N V M+ RN+ +G
Sbjct: 324 LPDA-TIALNYMLNRFGNIVKNLTVYPENMK-RNMTRTYG 361
>1s9u_A Putative component of anaerobic dehydrogenases; structural
genomics, anaerobic dehydrogenases component, PSI
structure initiative; 1.38A {Salmonella typhimurium}
SCOP: a.184.1.1 PDB: 3efp_A 3cw0_A
Length = 207
Score = 26.5 bits (58), Expect = 9.0
Identities = 12/64 (18%), Positives = 21/64 (32%)
Query: 193 VISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYI 252
V + +L + F P+S T L + D + + H ++L
Sbjct: 15 VTARVLGALFYYSPESHETAPLVQALLNDDWQAQWPLDAEALAPVAAMFKTHSEESLPQA 74
Query: 253 LQHL 256
Q L
Sbjct: 75 WQRL 78
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A
{Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Length = 429
Score = 26.9 bits (60), Expect = 9.4
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 241 LPEHHFQTLKYILQHLKRVVDNSEVN--KMEARNLAIMFG 278
P+ QTL Y++ VV N +VN +M+ +N+ + G
Sbjct: 312 FPDA-TQTLYYMIVTATNVVRNMKVNEERMK-KNIDLTKG 349
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.129 0.382
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,291,539
Number of extensions: 240326
Number of successful extensions: 667
Number of sequences better than 10.0: 1
Number of HSP's gapped: 637
Number of HSP's successfully gapped: 87
Length of query: 294
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 201
Effective length of database: 4,105,140
Effective search space: 825133140
Effective search space used: 825133140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.7 bits)