RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5716
(294 letters)
>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 196
Score = 114 bits (286), Expect = 1e-31
Identities = 52/165 (31%), Positives = 90/165 (54%), Gaps = 8/165 (4%)
Query: 136 SNIGVPL--QHCVSV----NLLCPFLFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWS 189
N P+ C+ L L+ RV G T + + A ++ + + + + +
Sbjct: 14 HNTQRPMVVDICIREIEARGLKSEGLY-RVSGFTEHIEDVKMAFDRDGEKADISANV-YP 71
Query: 190 DVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTL 249
D+N+I+ LK +FR LP ++T + Y FI A KI + R+ + +++ LP H++TL
Sbjct: 72 DINIITGALKLYFRDLPIPVITYDTYSKFIDAAKISNADERLEAVHEVLMLLPPAHYETL 131
Query: 250 KYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTMVS 294
+Y++ HLK+V N + N M A NL I+FGPTL+R +D+ +T +
Sbjct: 132 RYLMIHLKKVTMNEKDNFMNAENLGIVFGPTLMRPPEDSTLTTLH 176
>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 191
Score = 113 bits (283), Expect = 3e-31
Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 6/156 (3%)
Query: 142 LQHCVSV----NLLCPFLFPRVPGNTAAVSSLTEAVNKGLDASVLEQD-PRWSDVNVISS 196
++ C+ + L+ R+ G + V L + A+ E + ++ I+S
Sbjct: 11 IKKCIHAVETRGINEQGLY-RIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITS 69
Query: 197 LLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYILQHL 256
LK++ R LP L+ + FI+A K+E+ +R++ I LVH LPE + Q L ++ HL
Sbjct: 70 ALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHL 129
Query: 257 KRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTM 292
+V DN + N M NL ++FGPTL+R ++ + +
Sbjct: 130 AKVADNHKQNLMTVANLGVVFGPTLLRPQEETVAAI 165
>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 196
Score = 112 bits (282), Expect = 5e-31
Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 10/164 (6%)
Query: 133 PPGSNIGVPLQHCVSV----NLLCPFLFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRW 188
P I + L+ V+ L +F R NT V + + N GL + +
Sbjct: 19 PEQEPIPIVLRETVAYLQAHALTTEGIF-RRSANTQVVREVQQKYNMGLPVDFDQ----Y 73
Query: 189 SDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQT 248
+ +++ + +LK+F R LP+ LLT +LYPH + I++ R+ +++ LPE ++Q
Sbjct: 74 NALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDES-QRVPATLQVLQTLPEENYQV 132
Query: 249 LKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTM 292
L+++ L ++ +S+ NKM NLA++FGP L+ A D +
Sbjct: 133 LRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLK 176
>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 184
Score = 109 bits (274), Expect = 5e-30
Identities = 35/166 (21%), Positives = 69/166 (41%), Gaps = 13/166 (7%)
Query: 134 PGSNIGVPLQHCVSV----NLLCPFLFPRVPGNTAAVSSLTEAVNKGLDASVLEQDPRWS 189
P L V L C L+ R + + ++ L + ++ D
Sbjct: 10 PPDIAPPLLIKLVEAIEKKGLECSTLY-RTQSS-SNLAELRQLLDCDTP----SVDLEMI 63
Query: 190 DVNVISSLLKSFFRRLPDSLLTTELYPHFIQA-DKIEDPATRMATIKKLVH--ELPEHHF 246
DV+V++ K + LP+ ++ +Y I +++ + +KKL+ +P ++
Sbjct: 64 DVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYW 123
Query: 247 QTLKYILQHLKRVVDNSEVNKMEARNLAIMFGPTLVRAGDDNMVTM 292
TL+Y+L+H ++ S N + AR L+ +F P L R +
Sbjct: 124 LTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFSAASSDNT 169
>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein
APS {Mouse (Mus musculus) [TaxId: 10090]}
Length = 136
Score = 41.4 bits (96), Expect = 2e-05
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 3 GSCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA 62
S I + + ++ + L + E +L+ D+L W+ D+Q +
Sbjct: 73 VSIPLSAIIEVRTTMPLEMPEKDNTFVLKVEN-GAEYILETIDSLQKHSWVADIQG-CVD 130
Query: 63 QSASE 67
S
Sbjct: 131 SGPSS 135
>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21
{Human (Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 36.5 bits (83), Expect = 0.001
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 10 IGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASESN 69
+ ++++ TKRK+V RL++ + E L QA+D M WI+ +Q +
Sbjct: 60 VNACLIDISYSETKRKNVFRLTTS--DCECLFQAEDRDDMLAWIKTIQESSNLNEEDTGV 117
Query: 70 ISPASGQKNRK 80
+ + K
Sbjct: 118 TNRDLISRRIK 128
>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 122
Score = 33.7 bits (76), Expect = 0.007
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 5 CERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQS 64
D+ + +E+A DYTK+KHVLR+ + LLQA D M+ W+ L+ A + S
Sbjct: 64 EPSYDLQNAAIEIASDYTKKKHVLRVKLANGAL-FLLQAHDDTEMSQWVTSLK--AQSDS 120
Query: 65 AS 66
+
Sbjct: 121 TA 122
>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain
[TaxId: 10090]}
Length = 106
Score = 31.6 bits (70), Expect = 0.032
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 8 IDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQ 57
+ + EVA DY K+KHV S E L QA D M WI+ +
Sbjct: 56 VSLKEAICEVALDYKKKKHV-FKLRLSDGNEYLFQAKDDEEMNTWIQAIS 104
>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 209
Score = 31.8 bits (71), Expect = 0.069
Identities = 6/56 (10%), Positives = 12/56 (21%), Gaps = 1/56 (1%)
Query: 3 GSCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQT 58
G K+ + +P A W++ L+
Sbjct: 149 GEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRI-YQFTAASPKDAEEWVQQLKF 203
>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 113
Score = 29.1 bits (64), Expect = 0.25
Identities = 8/63 (12%), Positives = 19/63 (30%)
Query: 5 CERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQS 64
I + + + C ++ + + + + QA W+RD+
Sbjct: 45 KGMIPLKGSTLTSPCQDFGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIKCIE 104
Query: 65 ASE 67
E
Sbjct: 105 GLE 107
>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha,
APPL1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 28.4 bits (62), Expect = 0.33
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 12 HNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQ 57
NC +A D R++ +++S +LQA+ WI +
Sbjct: 53 DNCSVMAVDCEDRRYCFQITSFDGKKSSILQAESKKDHEEWICTIN 98
>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 28.6 bits (63), Expect = 0.36
Identities = 10/60 (16%), Positives = 17/60 (28%), Gaps = 2/60 (3%)
Query: 5 CERIDIGHNCVEVAC-DYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQ 63
I + C +++ +QAD M WI+ + AI
Sbjct: 43 LRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSG-AIVA 101
>d1dzfa1 c.52.3.1 (A:5-143) Eukaryotic RPB5 N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 139
Score = 28.7 bits (64), Expect = 0.39
Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 183 EQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELP 242
P+ ++ ++ + + PD L+ F ++P+ + T+K V +
Sbjct: 46 MGRPQRKMMSFQANPTEESISKFPD---MGSLWVEFC-----DEPSVGVKTMKTFVIHIQ 97
Query: 243 EHHFQTLKYILQH 255
E +FQT ++ Q+
Sbjct: 98 EKNFQTGIFVYQN 110
>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing
protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 99
Score = 28.0 bits (61), Expect = 0.46
Identities = 10/49 (20%), Positives = 13/49 (26%), Gaps = 2/49 (4%)
Query: 12 HNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA 60
V + HV +L L A W+ L T A
Sbjct: 52 KLSVPDPEERLDSGHVWKLQWA--KQSWYLSASSAELQQQWLETLSTAA 98
>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and
3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens)
[TaxId: 9606]}
Length = 100
Score = 28.2 bits (62), Expect = 0.46
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 3/59 (5%)
Query: 5 CERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQ 63
+D+ +R + L P L A + WI+ L+ ++Q
Sbjct: 44 IRILDLTECSAVQFDYSQERVNCFCLVFP--FRTFYLCAKTGVEADEWIKILRW-KLSQ 99
>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor
9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 162
Score = 29.0 bits (64), Expect = 0.49
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 25 KHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSASESNISPASGQKNRKFASA 84
K+ +L + + L A W+R + E S + R A
Sbjct: 97 KNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERKMVQEDEKIGFEISENQKR---QA 153
Query: 85 STSPRKSS 92
+ + RK+S
Sbjct: 154 AMTVRKAS 161
>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding
protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 28.0 bits (61), Expect = 0.58
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 12 HNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQ 57
+ + R+ P T +L AD + W+R L
Sbjct: 59 NIRPDGPGAPRGRRFTFTAEHPGMRT-YVLAADTLEDLRGWLRALG 103
>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase
C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 101
Score = 27.7 bits (60), Expect = 0.72
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 11 GHNCVEVACDYTKRKHVLRLSSPSSNTE-LLLQADDTLTMAHWIRDLQTHAIAQSA 65
R V +S PS L + AD + W++ ++ +AQ+A
Sbjct: 48 ACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIR--EVAQTA 101
>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 104
Score = 27.6 bits (60), Expect = 0.79
Identities = 8/63 (12%), Positives = 18/63 (28%), Gaps = 6/63 (9%)
Query: 1 MTGSCERIDIGHNCVEVACD-----YTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRD 55
I + V ++ +++ + + LQA WI+
Sbjct: 40 AEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITAD-EVHYFLQAATPKERTEWIKA 98
Query: 56 LQT 58
+Q
Sbjct: 99 IQM 101
>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 116
Score = 27.5 bits (60), Expect = 0.93
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 4 SCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQ 57
+ N V + ++ ++ + +T +QA A WI ++
Sbjct: 61 GSLVSALEDNGVPTGVKGNVQGNLFKVITKD-DTHYYIQASSKAERAEWIEAIK 113
>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 27.2 bits (59), Expect = 1.0
Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 5 CERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQ 57
I + +K KH++ L + + + AD W + L
Sbjct: 50 KRSIPLESCFNINKRADSKNKHLVALYTR--DEHFAIAADSEAEQDSWYQALL 100
>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein
SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 26.8 bits (58), Expect = 1.6
Identities = 7/55 (12%), Positives = 14/55 (25%), Gaps = 1/55 (1%)
Query: 3 GSCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQ 57
G+ +K++ L+S T A W+ +
Sbjct: 46 GTFLIKGYSVRMAPHLRRDSKKESCFELTSQDRRT-YEFTATSPAEARDWVDQIS 99
>d1s9ua_ a.184.1.1 (A:) Putative component of anaerobic
dehydrogenases YnfI {Salmonella typhimurium [TaxId:
90371]}
Length = 207
Score = 27.3 bits (60), Expect = 1.7
Identities = 12/64 (18%), Positives = 21/64 (32%)
Query: 193 VISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYI 252
V + +L + F P+S T L + D + + H ++L
Sbjct: 15 VTARVLGALFYYSPESHETAPLVQALLNDDWQAQWPLDAEALAPVAAMFKTHSEESLPQA 74
Query: 253 LQHL 256
Q L
Sbjct: 75 WQRL 78
>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 169
Score = 27.1 bits (59), Expect = 1.9
Identities = 6/55 (10%), Positives = 15/55 (27%), Gaps = 2/55 (3%)
Query: 3 GSCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQ 57
R + +E + + ++ L + + WI L+
Sbjct: 76 RQIPRRGEESSEMEQISIIERFPYPFQVVYD--EGPLYVFSPTEELRKRWIHQLK 128
>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 26.5 bits (57), Expect = 2.2
Identities = 7/60 (11%), Positives = 14/60 (23%), Gaps = 4/60 (6%)
Query: 1 MTGSCERIDIGHNCVEVACD---YTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQ 57
I V + K+ + +P A W++ L+
Sbjct: 49 DKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRI-YQFTAASPKDAEEWVQQLK 107
>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 26.0 bits (56), Expect = 2.7
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 14/70 (20%)
Query: 12 HNCVEVACDYTKRKHVLRLSSPSSNTE------LLLQADDTLTMAHWIRDLQTHAIAQSA 65
K V + S + +L A M W++ L +
Sbjct: 57 TIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFL------RRV 110
Query: 66 SESNISPASG 75
+ S P+SG
Sbjct: 111 AGS--GPSSG 118
>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 127
Score = 26.0 bits (56), Expect = 3.3
Identities = 7/73 (9%), Positives = 21/73 (28%), Gaps = 21/73 (28%)
Query: 12 HNCVEVACDYTKRKHVLRLSSPS--------------------SNTELLLQADDTLTMAH 51
N ++ + L +PS ++ + A
Sbjct: 51 ENLSIREVLDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEE 110
Query: 52 WIRDLQTHAIAQS 64
W++ ++ +I++
Sbjct: 111 WMKSIKA-SISRD 122
>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 26.1 bits (56), Expect = 3.3
Identities = 6/56 (10%), Positives = 14/56 (25%)
Query: 5 CERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHA 60
+ + ++R ++ E + W +QT A
Sbjct: 53 LNNFSVAQCQLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVA 108
>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein
TRIO {Human (Homo sapiens) [TaxId: 9606]}
Length = 121
Score = 25.7 bits (56), Expect = 3.6
Identities = 8/51 (15%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 15 VEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQSA 65
E + + +P+S+ +++L+A WI+ ++ I +
Sbjct: 72 TEHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIR-EVIQERT 121
>d4ubpc1 b.92.1.1 (C:1-131,C:435-483) alpha-Subunit of urease
{Bacillus pasteurii [TaxId: 1474]}
Length = 180
Score = 25.8 bits (57), Expect = 4.5
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 267 KMEARNLAIMFGPT---LVRAGDDNMVTMV 293
K+ + A +GPT VR D ++ V
Sbjct: 2 KINRQQYAESYGPTVGDEVRLADTDLWIEV 31
>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1,
STAP-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 136
Score = 25.7 bits (55), Expect = 4.6
Identities = 8/76 (10%), Positives = 23/76 (30%)
Query: 5 CERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIAQS 64
+ + + K+ + + E+ L+ ++T + W + T
Sbjct: 50 YVDKLDIVDLTCLTEQNSTEKNCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVTELSV 109
Query: 65 ASESNISPASGQKNRK 80
++ P K +
Sbjct: 110 PQNVSLLPGQVIKLHE 125
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH
{Bacillus subtilis [TaxId: 1423]}
Length = 83
Score = 24.7 bits (54), Expect = 5.0
Identities = 10/56 (17%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 231 MATIKKLVHELPEHHFQTLKYILQHLKRVVDNSEVNKMEARNLAIMFG---PTLVR 283
+A I+ + H+LP + YIL H + ++++ ++ + ++R
Sbjct: 6 LAIIQSMKHKLPPSERKLADYILAHPHKAIEST------VNEISALANSSDAAVIR 55
>d2ha9a1 c.7.1.5 (A:1-440) Uncharacterized protein SP0239
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 440
Score = 26.3 bits (58), Expect = 5.5
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 160 PGNTAAVSSLTEAVNKG 176
G TAA++ L + V KG
Sbjct: 296 HGTTAALALLNDQVKKG 312
>d1otka_ a.25.1.2 (A:) Phenylacetic acid degradation protein PaaC
{Escherichia coli [TaxId: 562]}
Length = 244
Score = 25.6 bits (56), Expect = 6.6
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 39 LLLQADDTLTMAHWIRDLQTHA 60
L D+ L ++ + + HA
Sbjct: 9 TLRLGDNCLVLSQRLGEWCGHA 30
>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8
(ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 25.3 bits (54), Expect = 6.9
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 3 GSCERIDIGHNCVEVACDYTKRKHVLRLSSPSSNTELLLQADDTLTMAHWIRDLQTHAIA 62
G C ++ A K + V ++ P ++ L+++A W+ L+ A+
Sbjct: 66 GFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALEL-ALK 124
Query: 63 QSAS 66
S
Sbjct: 125 SGPS 128
>d1e9yb1 b.92.1.1 (B:1-131,B:432-480) alpha-Subunit of urease
{Helicobacter pylori [TaxId: 210]}
Length = 180
Score = 25.5 bits (56), Expect = 7.3
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 267 KMEARNLAIMFGPT---LVRAGDDNMVTMV 293
K+ + M+GPT VR GD +++ V
Sbjct: 3 KISRKEYVSMYGPTTGDKVRLGDTDLIAEV 32
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS)
{Escherichia coli [TaxId: 562]}
Length = 162
Score = 25.0 bits (54), Expect = 7.9
Identities = 20/100 (20%), Positives = 29/100 (29%), Gaps = 11/100 (11%)
Query: 193 VISSLLKSFFRRLPDSLLTTELYPHFIQADKIEDPATRMATIKKLVHELPEHHFQTLKYI 252
+ K F L L +LY F A ++ A K V E+ +Y+
Sbjct: 8 NAGFINKRFDGVLASELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYV 67
Query: 253 LQHLKRVVDNSEVNKMEA-----------RNLAIMFGPTL 281
+ VV E + R L P L
Sbjct: 68 DEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVL 107
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 25.2 bits (54), Expect = 8.9
Identities = 9/39 (23%), Positives = 12/39 (30%)
Query: 183 EQDPRWSDVNVISSLLKSFFRRLPDSLLTTELYPHFIQA 221
E + + + L FR LY HF A
Sbjct: 139 EFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTA 177
>d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein
{Bacteroides fragilis [TaxId: 817]}
Length = 161
Score = 25.1 bits (54), Expect = 9.2
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 228 ATRMATIKKLVHELPEHH 245
+ +K+L+ LP HH
Sbjct: 141 ISATVVLKRLLENLPHHH 158
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.129 0.382
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,029,230
Number of extensions: 44163
Number of successful extensions: 139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 40
Length of query: 294
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 209
Effective length of database: 1,240,546
Effective search space: 259274114
Effective search space used: 259274114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.9 bits)