BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5717
         (351 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1K8Q|A Chain A, Crystal Structure Of Dog Gastric Lipase In Complex With A
           Phosphonate Inhibitor
 pdb|1K8Q|B Chain B, Crystal Structure Of Dog Gastric Lipase In Complex With A
           Phosphonate Inhibitor
          Length = 377

 Score = 32.0 bits (71), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 11/95 (11%)

Query: 161 LKDRLKLFSPLRAVATVKISPNKLDVRTLILGRMEDIITKTKAVYTHSQRPSTDEVNLCC 220
           L  R+K F  L  VATVK +   ++   L+   +  +I   K  Y H          +C 
Sbjct: 169 LAKRIKTFYALAPVATVKYTETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCS 228

Query: 221 RDSVD----------CGRFSRHQSMAVRLSVECGH 245
           R++VD          CG  + + +M+ RL V   H
Sbjct: 229 RETVDLLCSNALFIICGFDTMNLNMS-RLDVYLSH 262


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.126    0.367 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,059,513
Number of Sequences: 62578
Number of extensions: 351702
Number of successful extensions: 787
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 772
Number of HSP's gapped (non-prelim): 13
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)