BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5717
(351 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24UI6|IF2_DESHY Translation initiation factor IF-2 OS=Desulfitobacterium hafniense
(strain Y51) GN=infB PE=3 SV=1
Length = 971
Score = 128 bits (322), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 110/167 (65%), Gaps = 16/167 (9%)
Query: 2 SERPMSERP-SDRPMSERP-SERPMSERPSLRPSERPMSERP-SERPMSERP-SERPMSE 57
+RPM +RP RPM +RP +RPM +RP +RPM +RP +RPM +RP +RPM +
Sbjct: 163 GQRPMGDRPQGQRPMGDRPQGQRPMGDRPQ---GQRPMGDRPQGQRPMGDRPQGQRPMGD 219
Query: 58 RP-SERPMSERPMSERP-SERPMSERPMSERP-SERP-SERLMSERPMSERP-SERPMSE 112
RP +RPM +RP +RP +RP +RPM +RP +RP +R +RPM +RP +RPM +
Sbjct: 220 RPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGD 279
Query: 113 RP-SERPMSERP-SERPMSERPMSERP-SERPMSERPMSERP-SERP 155
RP +RPM +RP +RPM +RP +RP +RP +RPM +RP +RP
Sbjct: 280 RPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRP 326
Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 75/118 (63%), Gaps = 13/118 (11%)
Query: 60 SERPMSERPMSERP-SERPMSERPMSERP-SERP-SERLMSERPMSERP-SERPMSERP- 114
+RPM +RP +RP +RP +RPM +RP +RP +R +RPM +RP +RPM +RP
Sbjct: 103 GQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQ 162
Query: 115 SERPMSERP-SERPMSERPMSERP-SERPMSERPMSERP------SERPMSERPLKDR 164
+RPM +RP +RPM +RP +RP +RP +RPM +RP +RP +RP+ DR
Sbjct: 163 GQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDR 220
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 87/145 (60%), Gaps = 22/145 (15%)
Query: 2 SERPMSERP-SDRPMSERP-SERPMSERPSLRPSERPMSERP-SERPMSERP-SERPMSE 57
+RPM +RP RPM +RP +RPM +RP +RPM +RP +RPM +RP +RPM +
Sbjct: 213 GQRPMGDRPQGQRPMGDRPQGQRPMGDRPQ---GQRPMGDRPQGQRPMGDRPQGQRPMGD 269
Query: 58 RP-SERPMSERPMSERP-SERPMSERPMSERP-SERP-SERLMSERPMSERPSERPMSER 113
RP +RPM +RP +RP +RP +RPM +RP +RP +R +RPM +RP +R
Sbjct: 270 RPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQGQRPMGDRPQ----GQR 325
Query: 114 PSER-------PMSERPSERPMSER 131
P +R P E+P +R + E+
Sbjct: 326 PPQRPPATPGTPAVEQPPKRQIGEK 350
>sp|Q5XGC9|SRFB1_XENTR Serum response factor-binding protein 1 OS=Xenopus tropicalis
GN=srfbp1 PE=2 SV=1
Length = 535
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 83/127 (65%), Gaps = 12/127 (9%)
Query: 52 ERPMSERPS-ERPMSERPMSERPS-ERPMSERPMSERPS-ERPSERLMSERPMSERPS-E 107
ERP ERP+ ERP ERP ERP+ ERP ERP ERP+ ERP+ ERP ERP+ E
Sbjct: 217 ERPAVERPAVERPAVERPAVERPAVERPAVERPAVERPAVERPA----VERPAVERPAVE 272
Query: 108 RPMSERPS-ERPMSERPS-ERPMSERPMSERPS-ERPMSERPMSERPS-ERPMSERPLKD 163
RP ERP+ ERP ERP+ ERP ERP ERP+ ERP ERP ERP+ ERP+ E P +
Sbjct: 273 RPAVERPAVERPAVERPAVERPAVERPAVERPAVERPAVERPAVERPAVERPVVESPAVE 332
Query: 164 RLKLFSP 170
R + SP
Sbjct: 333 RPPVESP 339
>sp|P53353|ASPX_VULVU Sperm acrosomal protein FSA-ACR.1 (Fragment) OS=Vulpes vulpes PE=2
SV=1
Length = 349
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 100/165 (60%), Gaps = 18/165 (10%)
Query: 2 SERPMSERPS-DRPMSERPS-ERPMSERPSLRPSERPMSERPS-ERPMSERPS-ERPMSE 57
SE SE S ++P E+PS E+ E+PS E+ E+PS E+ + E+PS E+ E
Sbjct: 105 SEHATSEHTSGEQPSGEQPSGEKSSGEQPS---GEKSSGEQPSGEKSLGEQPSGEQSSGE 161
Query: 58 RPS-ERPMSERPMSERPS-ERPMSERPMSERP-SERPS-ERLMSERPMSERP-SERPMSE 112
+ S E+ E+ ++E+PS E ++E+P E+ +ERPS E+ ++E+P+ E+ +ERP E
Sbjct: 162 KSSAEQTSGEQAVAEKPSGEHAVAEKPSGEQAVAERPSGEQAVAEKPLGEQAVAERPSGE 221
Query: 113 RPS-ERPMSERPS-ERPMSERPMSERPSERPMSERPMSERPSERP 155
+ S E+ SE+ S E+ +E+ SE+ S E+P+ E+PS P
Sbjct: 222 QASIEKASSEQASAEQASAEQASSEQAS----GEKPLGEQPSGIP 262
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 30/169 (17%)
Query: 20 SERPMSERPSLRPSERPMSERPS-ERPMSERPSERPMSERPSERPMSERPMSERPS-ERP 77
ER E S SE SE S E+P E+PS S E+P E+ E+PS E+
Sbjct: 95 GERATGEHTS---SEHATSEHTSGEQPSGEQPSGEKSS---GEQPSGEKSSGEQPSGEKS 148
Query: 78 MSERPMSERPSERPS--ERLMSERPMSERPS-ERPMSERPS-ERPMSERPS------ERP 127
+ E+P E+ S S E+ E+ ++E+PS E ++E+PS E+ ++ERPS E+P
Sbjct: 149 LGEQPSGEQSSGEKSSAEQTSGEQAVAEKPSGEHAVAEKPSGEQAVAERPSGEQAVAEKP 208
Query: 128 MSERPMSERPS------ERPMSERPMSERP------SERPMSERPLKDR 164
+ E+ ++ERPS E+ SE+ +E+ SE+ E+PL ++
Sbjct: 209 LGEQAVAERPSGEQASIEKASSEQASAEQASAEQASSEQASGEKPLGEQ 257
>sp|P04922|CSP_PLAKU Circumsporozoite protein OS=Plasmodium knowlesi (strain nuri) PE=3
SV=1
Length = 351
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 58/129 (44%), Gaps = 4/129 (3%)
Query: 3 ERPMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSER 62
E+P + ++P + E+P + +P+ E+P+ E+P+ E+P+
Sbjct: 98 EQPAAGAGGEQPAAGAGGEQPAAGAGGEQPAAGARGEQPAAGAGGEQPAAGAGGEQPAAG 157
Query: 63 PMSERPMSERPSERPMS----ERPMSERPSERPSERLMSERPMSERPSERPMSERPSERP 118
E+P + E+P + E+P + E+P+ E+P + E+P + E+P
Sbjct: 158 AGGEQPAAGAGGEQPAAGAGGEQPAAGARGEQPAAGAGGEQPAAGAGGEQPAAGARGEQP 217
Query: 119 MSERPSERP 127
+ E+P
Sbjct: 218 AAGAGGEQP 226
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 30 LRPSERPMSERPSERPMSERPSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSE 89
L+ E+P + E+P + E+P + E+P + E+P+ E+P + E
Sbjct: 94 LKQPEQPAAGAGGEQPAAGAGGEQPAAGAGGEQPAA-GARGEQPAAGAGGEQPAAGAGGE 152
Query: 90 RPSERLMSERPMSERPSERPMSERPSERPMS----ERPSERPMSERPMSERPSERPMS-- 143
+P+ E+P + E+P + E+P + E+P+ E+P + E+P +
Sbjct: 153 QPAAGAGGEQPAAGAGGEQPAAGAGGEQPAAGARGEQPAAGAGGEQPAAGAGGEQPAAGA 212
Query: 144 --ERPMSERPSERP 155
E+P + E+P
Sbjct: 213 RGEQPAAGAGGEQP 226
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/152 (19%), Positives = 58/152 (38%), Gaps = 30/152 (19%)
Query: 35 RPMSERPSERPMS-------------------------ERPSERPMSERPSERPMSERPM 69
R + E+P E E+P+ E+P+ E+P
Sbjct: 60 RGLGEKPKEGADKEKKKEKEKEKEEEPKKPNENKLKQPEQPAAGAGGEQPAAGAGGEQPA 119
Query: 70 SERPSERPMS----ERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMSERPSE 125
+ E+P + E+P + E+P+ E+P + E+P + E+P + E
Sbjct: 120 AGAGGEQPAAGARGEQPAAGAGGEQPAAGAGGEQPAAGAGGEQPAAGAGGEQPAAGAGGE 179
Query: 126 RPMSERPMSERPSERPMSERPMSERPSERPMS 157
+P + E+P+ E+P + E+P +
Sbjct: 180 QPAA-GARGEQPAAGAGGEQPAAGAGGEQPAA 210
Score = 38.1 bits (87), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 16/76 (21%), Positives = 34/76 (44%)
Query: 2 SERPMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSE 61
E+P + ++P + E+P + +P+ E+P+ E+P+ E+P+
Sbjct: 151 GEQPAAGAGGEQPAAGAGGEQPAAGAGGEQPAAGARGEQPAAGAGGEQPAAGAGGEQPAA 210
Query: 62 RPMSERPMSERPSERP 77
E+P + E+P
Sbjct: 211 GARGEQPAAGAGGEQP 226
>sp|Q06990|ASPX_PAPHA Acrosomal protein SP-10 OS=Papio hamadryas GN=ACRV1 PE=1 SV=1
Length = 285
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 104/251 (41%), Gaps = 41/251 (16%)
Query: 8 ERPSD-RPMSERPSE-RPMSERPSLRPS--ERPMSER-PSERPMSERPSERPMS--ERPS 60
E PSD + E S +SE S E ++E P E SE S P +
Sbjct: 47 ENPSDAEALYETASGLNTLSEHGSSEHGSREHTVAEHTPGEHAESEHASGEPAATGHAEG 106
Query: 61 ERPMSERPMSERPSERPMS-ERPMSERPS-ERPS-ERLMSERPMSERPSERPMSERPSER 117
E + E+P E+PS +S E+ + E S E+PS E+L E E+PS S E+
Sbjct: 107 EHTVGEQPSGEQPSGEHLSGEQSLGEHASGEQPSDEQLSGEHASGEQPSGEHAS---GEQ 163
Query: 118 PMSERPS-ERPMSERPMSERPSERPMSERPMSERPSERPMSERPLKDRLKLFS------- 169
P E+PS E E+ + E +SE+P E+PS P+S L ++
Sbjct: 164 PSGEQPSGEHASGEQSLGEHA----LSEKPSGEQPSGAPISSISTGTILNCYTCAYMNDQ 219
Query: 170 --PLRAVATVKISPNKLDV---RTLILGRMEDIITKTK------AVYTHSQRPSTDEVNL 218
LR T I+ N + G+++ ++ + +++H R +
Sbjct: 220 GRCLRGEGTC-ITQNSQQCMLKKIFEGGKLQFMVQGCENMCPSMNLFSHGTRMQI----I 274
Query: 219 CCRDSVDCGRF 229
CCR+ C +
Sbjct: 275 CCRNQSFCNKI 285
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 62/136 (45%), Gaps = 25/136 (18%)
Query: 1 MSERPMSERPS-DRPMSER-PSERPMSERPSLRPS------------ERPMSERPSERPM 46
+SE SE S + ++E P E SE S P+ E+P E+PS +
Sbjct: 65 LSEHGSSEHGSREHTVAEHTPGEHAESEHASGEPAATGHAEGEHTVGEQPSGEQPSGEHL 124
Query: 47 SERPS--ERPMSERPSERPMS------ERPMSERPS-ERPMSERPMSERPSERPS--ERL 95
S S E E+PS+ +S E+P E S E+P E+P E S S E
Sbjct: 125 SGEQSLGEHASGEQPSDEQLSGEHASGEQPSGEHASGEQPSGEQPSGEHASGEQSLGEHA 184
Query: 96 MSERPMSERPSERPMS 111
+SE+P E+PS P+S
Sbjct: 185 LSEKPSGEQPSGAPIS 200
>sp|Q6H236|PEG3_BOVIN Paternally-expressed gene 3 protein OS=Bos taurus GN=PEG3 PE=2 SV=1
Length = 2387
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 80/173 (46%), Gaps = 14/173 (8%)
Query: 6 MSERPSDRPMSERPSERPMSERPSL-----RPSERPMSERPSERPMSERPSERPMSERPS 60
++ P+ +E P++ +E P+ P++ ++ P++ +E P+E +E P+
Sbjct: 1438 YAQEPAQTSYAEEPAQTSYAEEPAQTSYAEEPAQTSYTQEPAQTNYTEEPAEASYTEEPA 1497
Query: 61 ERPMSERPMS----ERPSERPMSERPMSERPSERPSERLMSERP----MSERPSERPMSE 112
+ +E P E P++ +E P +E P++ E P +E P++ ++
Sbjct: 1498 QTSYAEEPAQTSYPEEPAQTSYAEEPAQTSYAEEPAQTSYPEEPAQTSYTEEPAQTSYAK 1557
Query: 113 RPSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSERPMSERPLKDRL 165
P++ E P++ +E P +E P ++ +E P++ SE P + R
Sbjct: 1558 EPAQTSYPEEPAQTSYAEEPAQTSYAEEP-AQTSYAEEPAQTSYSEEPAQTRY 1609
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 84/178 (47%), Gaps = 21/178 (11%)
Query: 6 MSERPSDRPMSERPSERPMSERPSL-----RPSERPMSERPSERPMSERPSERPMSERPS 60
+E P+ +E P++ ++ P+ P++ +E P++ +E P++ ++ P+
Sbjct: 1357 YTEEPAQTSYTEEPAQTSYTQEPAQTSCTEEPAQTSYTEEPAQTSYTEEPAQTSYTQEPA 1416
Query: 61 ERPMSERP----MSERPSERPMSERPMSERPSERPSERLMSERP----MSERPSERPMSE 112
+ +E P +E P++ ++ P +E P++ +E P +E P++ ++
Sbjct: 1417 QTSYTEEPAQTSYTEEPAQTSYAQEPAQTSYAEEPAQTSYAEEPAQTSYAEEPAQTSYTQ 1476
Query: 113 RPSERPMSERPSERPMSERP----MSERPSERPMSERP----MSERPSERPMSERPLK 162
P++ +E P+E +E P +E P++ E P +E P++ +E P +
Sbjct: 1477 EPAQTNYTEEPAEASYTEEPAQTSYAEEPAQTSYPEEPAQTSYAEEPAQTSYAEEPAQ 1534
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 80/164 (48%), Gaps = 13/164 (7%)
Query: 7 SERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPMSE 66
+E P+ +E P++ +E P+ + ++ P++ +E P++ +E P++ +E
Sbjct: 1349 TEEPAQTSYTEEPAQTSYTEEPA----QTSYTQEPAQTSCTEEPAQTSYTEEPAQTSYTE 1404
Query: 67 RP----MSERPSERPMSERPMSERPSERPSERLMSERP----MSERPSERPMSERPSERP 118
P ++ P++ +E P +E P++ ++ P +E P++ +E P++
Sbjct: 1405 EPAQTSYTQEPAQTSYTEEPAQTSYTEEPAQTSYAQEPAQTSYAEEPAQTSYAEEPAQTS 1464
Query: 119 MSERPSERPMSERPMSERPSERPMSERPMSERPSERPMSERPLK 162
+E P++ ++ P +E P +E +E P++ +E P +
Sbjct: 1465 YAEEPAQTSYTQEPAQTNYTEEP-AEASYTEEPAQTSYAEEPAQ 1507
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 80/169 (47%), Gaps = 14/169 (8%)
Query: 7 SERPSDRPMSERPSERPMSERPSL-----RPSERPMSERPSERPMSERPSERPMSERPSE 61
+E P+ +E P++ +E P+ P++ +E P++ +E P++ ++ P++
Sbjct: 1385 TEEPAQTSYTEEPAQTSYTEEPAQTSYTQEPAQTSYTEEPAQTSYTEEPAQTSYAQEPAQ 1444
Query: 62 RPMSERP----MSERPSERPMSERPMSERPSERPSERLMSERP----MSERPSERPMSER 113
+E P +E P++ +E P ++ P++ +E P +E P++ +E
Sbjct: 1445 TSYAEEPAQTSYAEEPAQTSYAEEPAQTSYTQEPAQTNYTEEPAEASYTEEPAQTSYAEE 1504
Query: 114 PSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSERPMSERPLK 162
P++ E P++ +E P +E P ++ E P++ +E P +
Sbjct: 1505 PAQTSYPEEPAQTSYAEEPAQTSYAEEP-AQTSYPEEPAQTSYTEEPAQ 1552
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/170 (20%), Positives = 80/170 (47%), Gaps = 14/170 (8%)
Query: 6 MSERPSDRPMSERPSERPMSERPSL-----RPSERPMSERPSERPMSERPSERPMSERPS 60
+E P+ +E P++ ++ P+ P++ +E P++ ++ P++ +E P+
Sbjct: 1393 YTEEPAQTSYTEEPAQTSYTQEPAQTSYTEEPAQTSYTEEPAQTSYAQEPAQTSYAEEPA 1452
Query: 61 ERPMSERP----MSERPSERPMSERPMSERPSERPSERLMSERP----MSERPSERPMSE 112
+ +E P +E P++ ++ P +E P+E +E P +E P++ E
Sbjct: 1453 QTSYAEEPAQTSYAEEPAQTSYTQEPAQTNYTEEPAEASYTEEPAQTSYAEEPAQTSYPE 1512
Query: 113 RPSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSERPMSERPLK 162
P++ +E P++ +E P E P ++ +E P++ ++ P +
Sbjct: 1513 EPAQTSYAEEPAQTSYAEEPAQTSYPEEP-AQTSYTEEPAQTSYAKEPAQ 1561
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/169 (19%), Positives = 82/169 (48%), Gaps = 14/169 (8%)
Query: 7 SERPSDRPMSERPSERPMSERPSL-----RPSERPMSERPSERPMSERPSERPMSERPSE 61
+E P+ ++ P++ +E P+ P++ +E P++ ++ P++ +E P++
Sbjct: 1331 TEEPAQTSYTQEPAQTSCTEEPAQTSYTEEPAQTSYTEEPAQTSYTQEPAQTSCTEEPAQ 1390
Query: 62 RPMSERP----MSERPSERPMSERPMSERPSERPSERLMSERP----MSERPSERPMSER 113
+E P +E P++ ++ P +E P++ +E P ++ P++ +E
Sbjct: 1391 TSYTEEPAQTSYTEEPAQTSYTQEPAQTSYTEEPAQTSYTEEPAQTSYAQEPAQTSYAEE 1450
Query: 114 PSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSERPMSERPLK 162
P++ +E P++ +E P ++ P ++ +E P+E +E P +
Sbjct: 1451 PAQTSYAEEPAQTSYAEEPAQTSYTQEP-AQTNYTEEPAEASYTEEPAQ 1498
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 82/178 (46%), Gaps = 21/178 (11%)
Query: 6 MSERPSDRPMSERPSERPMSERPSL-----RPSERPMSERPSERPMSERPSERPMSERPS 60
++ P+ +E P++ +E P+ P++ +E P++ +E P++ +E P+
Sbjct: 1411 YTQEPAQTSYTEEPAQTSYTEEPAQTSYAQEPAQTSYAEEPAQTSYAEEPAQTSYAEEPA 1470
Query: 61 ERPMSERP----MSERPSERPMSERPMSERPSERPSERLMSERP----MSERPSERPMSE 112
+ ++ P +E P+E +E P +E P++ E P +E P++ +E
Sbjct: 1471 QTSYTQEPAQTNYTEEPAEASYTEEPAQTSYAEEPAQTSYPEEPAQTSYAEEPAQTSYAE 1530
Query: 113 RPSERPMSERPSERPMSERP----MSERPSERPMSERP----MSERPSERPMSERPLK 162
P++ E P++ +E P ++ P++ E P +E P++ +E P +
Sbjct: 1531 EPAQTSYPEEPAQTSYTEEPAQTSYAKEPAQTSYPEEPAQTSYAEEPAQTSYAEEPAQ 1588
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/172 (18%), Positives = 82/172 (47%), Gaps = 14/172 (8%)
Query: 7 SERPSDRPMSERPSERPMSERPSL-----RPSERPMSERPSERPMSERPSERPMSERPSE 61
+E P+ ++ P++ +E P+ P++ +E P++ +E P++ +E P++
Sbjct: 1313 TEEPAQTSYTQEPAQTSCTEEPAQTSYTQEPAQTSCTEEPAQTSYTEEPAQTSYTEEPAQ 1372
Query: 62 RPMSERPM----SERPSERPMSERPMSERPSERPSERLMSERP----MSERPSERPMSER 113
++ P +E P++ +E P +E P++ ++ P +E P++ +E
Sbjct: 1373 TSYTQEPAQTSCTEEPAQTSYTEEPAQTSYTEEPAQTSYTQEPAQTSYTEEPAQTSYTEE 1432
Query: 114 PSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSERPMSERPLKDRL 165
P++ ++ P++ +E P +E P ++ +E P++ ++ P +
Sbjct: 1433 PAQTSYAQEPAQTSYAEEPAQTSYAEEP-AQTSYAEEPAQTSYTQEPAQTNY 1483
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/178 (19%), Positives = 82/178 (46%), Gaps = 21/178 (11%)
Query: 6 MSERPSDRPMSERPSERPMSERPSL-----RPSERPMSERPSERPMSERPSERPMSERPS 60
+E P+ ++ P++ +E P+ P++ ++ P++ +E P++ +E P+
Sbjct: 1402 YTEEPAQTSYTQEPAQTSYTEEPAQTSYTEEPAQTSYAQEPAQTSYAEEPAQTSYAEEPA 1461
Query: 61 ERPMSERP----MSERPSERPMSERPMSERPSERPSERLMSERPMS----ERPSERPMSE 112
+ +E P ++ P++ +E P +E P++ +E P E P++ +E
Sbjct: 1462 QTSYAEEPAQTSYTQEPAQTNYTEEPAEASYTEEPAQTSYAEEPAQTSYPEEPAQTSYAE 1521
Query: 113 RPSERPMSERPSERPMSERP----MSERPSERPMSERPMS----ERPSERPMSERPLK 162
P++ +E P++ E P +E P++ ++ P E P++ +E P +
Sbjct: 1522 EPAQTSYAEEPAQTSYPEEPAQTSYTEEPAQTSYAKEPAQTSYPEEPAQTSYAEEPAQ 1579
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 82/169 (48%), Gaps = 14/169 (8%)
Query: 7 SERPSDRPMSERPSERPMSERPSL-----RPSERPMSERPSERPMSERPSERPMSERPSE 61
+E P+ +E P++ ++ P+ P++ ++ P++ +E P++ +E P++
Sbjct: 1304 TEEPAQTSCTEEPAQTSYTQEPAQTSCTEEPAQTSYTQEPAQTSCTEEPAQTSYTEEPAQ 1363
Query: 62 RPMSERP----MSERPSERPMSERPMSERPSERPSERLMSERP----MSERPSERPMSER 113
+E P ++ P++ +E P +E P++ +E P ++ P++ +E
Sbjct: 1364 TSYTEEPAQTSYTQEPAQTSCTEEPAQTSYTEEPAQTSYTEEPAQTSYTQEPAQTSYTEE 1423
Query: 114 PSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSERPMSERPLK 162
P++ +E P++ ++ P +E P ++ +E P++ +E P +
Sbjct: 1424 PAQTSYTEEPAQTSYAQEPAQTSYAEEP-AQTSYAEEPAQTSYAEEPAQ 1471
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/177 (18%), Positives = 85/177 (48%), Gaps = 21/177 (11%)
Query: 7 SERPSDRPMSERPSERPMSERPSL-----RPSERPMSERPSERPMSERPSERPMSERPSE 61
+E P+ +E P++ ++ P+ P++ +E P++ ++ P++ +E P++
Sbjct: 1277 TEEPAQTSCTEEPAQTSYTQEPAQTSCTEEPAQTSCTEEPAQTSYTQEPAQTSCTEEPAQ 1336
Query: 62 RPMSERPM----SERPSERPMSERPMSERPSERPSERLMSERPM----SERPSERPMSER 113
++ P +E P++ +E P +E P++ ++ P +E P++ +E
Sbjct: 1337 TSYTQEPAQTSCTEEPAQTSYTEEPAQTSYTEEPAQTSYTQEPAQTSCTEEPAQTSYTEE 1396
Query: 114 PSERPMSERPSERPMSERP----MSERPSERPMSERP----MSERPSERPMSERPLK 162
P++ +E P++ ++ P +E P++ +E P ++ P++ +E P +
Sbjct: 1397 PAQTSYTEEPAQTSYTQEPAQTSYTEEPAQTSYTEEPAQTSYAQEPAQTSYAEEPAQ 1453
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/177 (18%), Positives = 85/177 (48%), Gaps = 21/177 (11%)
Query: 7 SERPSDRPMSERPSERPMSERPSL-----RPSERPMSERPSERPMSERPSERPMSERPSE 61
+E P+ ++ P++ +E P+ P++ ++ P++ +E P++ ++ P++
Sbjct: 1286 TEEPAQTSYTQEPAQTSCTEEPAQTSCTEEPAQTSYTQEPAQTSCTEEPAQTSYTQEPAQ 1345
Query: 62 RPMSERP----MSERPSERPMSERPMSERPSERPSERLMSERP----MSERPSERPMSER 113
+E P +E P++ +E P ++ P++ +E P +E P++ +E
Sbjct: 1346 TSCTEEPAQTSYTEEPAQTSYTEEPAQTSYTQEPAQTSCTEEPAQTSYTEEPAQTSYTEE 1405
Query: 114 PSERPMSERPSERPMSERP----MSERPSERPMSERP----MSERPSERPMSERPLK 162
P++ ++ P++ +E P +E P++ ++ P +E P++ +E P +
Sbjct: 1406 PAQTSYTQEPAQTSYTEEPAQTSYTEEPAQTSYAQEPAQTSYAEEPAQTSYAEEPAQ 1462
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/173 (18%), Positives = 83/173 (47%), Gaps = 20/173 (11%)
Query: 6 MSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPMS 65
++ +D +E P++ +E P+ + ++ P++ +E P++ +E P++ +
Sbjct: 1267 YTDSAADTSCTEEPAQTSCTEEPA----QTSYTQEPAQTSCTEEPAQTSCTEEPAQTSYT 1322
Query: 66 ERPM----SERPSERPMSERPMSERPSERPSERLMSERP----MSERPSERPMSERPSER 117
+ P +E P++ ++ P +E P++ +E P +E P++ ++ P++
Sbjct: 1323 QEPAQTSCTEEPAQTSYTQEPAQTSCTEEPAQTSYTEEPAQTSYTEEPAQTSYTQEPAQT 1382
Query: 118 PMSERPSERPMSERP----MSERPSERPMSERP----MSERPSERPMSERPLK 162
+E P++ +E P +E P++ ++ P +E P++ +E P +
Sbjct: 1383 SCTEEPAQTSYTEEPAQTSYTEEPAQTSYTQEPAQTSYTEEPAQTSYTEEPAQ 1435
Score = 39.7 bits (91), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 72/162 (44%), Gaps = 7/162 (4%)
Query: 6 MSERPSDRPMSERPSERPMSERPSLRPSERP-----MSERPSERPMSERPSERPMSERPS 60
+E P++ +E P++ E P+ P +E P++ +E P+E +E P+
Sbjct: 988 YTEAPAEASYTEEPAQTSCIEEPAQTSYTNPAAETSYAEEPAQTSYTEAPAEASYTEEPA 1047
Query: 61 ERPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMS 120
+ E P ++ P +E +E P++ +E E P++ +E +E +
Sbjct: 1048 QTSCIEEP-AQTSYTNPAAETSYTEEPAQTSYTEAPAEASGIEEPAQTNYTEESAEVSYT 1106
Query: 121 ERPSERPMSERPMSERPSERPMSERPMSERPSERPMSERPLK 162
E PS+ E P ++ P +E +E P++ ++ P +
Sbjct: 1107 EEPSQTSCIEEPAQTSYTD-PAAETSYTEEPAQTSYTQEPAQ 1147
Score = 38.5 bits (88), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 78/175 (44%), Gaps = 14/175 (8%)
Query: 1 MSERPMSERPSDRPMSERPSERPMSERPSL-----RPSERPMSERPSERPMSERPSERPM 55
+E +E P+ +E P+E +E P+ P++ + +E +E P++
Sbjct: 1019 AAETSYAEEPAQTSYTEAPAEASYTEEPAQTSCIEEPAQTSYTNPAAETSYTEEPAQTSY 1078
Query: 56 SERPSERPMSERP----MSERPSERPMSERPMS----ERPSERPSERLMSERPMSERPSE 107
+E P+E E P +E +E +E P E P++ +E +E P++
Sbjct: 1079 TEAPAEASGIEEPAQTNYTEESAEVSYTEEPSQTSCIEEPAQTSYTDPAAETSYTEEPAQ 1138
Query: 108 RPMSERPSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSERPMSERPLK 162
++ P++ +E P++ +E P ++ P ++ ++ P+E +E P +
Sbjct: 1139 TSYTQEPAQTSCTEEPAQTSCTEEPAQTSYTQEP-AQTSYTKEPAEASYTEEPAQ 1192
Score = 38.5 bits (88), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 68/160 (42%), Gaps = 18/160 (11%)
Query: 20 SERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSE-------------RPMSE 66
+E P ++ P++ +E P++ +E P+E +E P++ P +E
Sbjct: 962 AEEPAQTSYAVEPAQTSYAEEPAQTSYTEAPAEASYTEEPAQTSCIEEPAQTSYTNPAAE 1021
Query: 67 RPMSERPSERPMSERPMSERPSERPSERLMSERP----MSERPSERPMSERPSERPMSER 122
+E P++ +E P +E P++ E P + +E +E P++ +E
Sbjct: 1022 TSYAEEPAQTSYTEAPAEASYTEEPAQTSCIEEPAQTSYTNPAAETSYTEEPAQTSYTEA 1081
Query: 123 PSERPMSERPMSERPSERPMSERPMSERPSERPMSERPLK 162
P+E E P +E +E +E PS+ E P +
Sbjct: 1082 PAEASGIEEPAQTNYTEE-SAEVSYTEEPSQTSCIEEPAQ 1120
Score = 36.6 bits (83), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/170 (18%), Positives = 76/170 (44%), Gaps = 9/170 (5%)
Query: 1 MSERPMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPS 60
+E P +D +E P ++ +E +E PS+ E P++ ++ +
Sbjct: 1213 YTEEPAQTSYTDPAAETSYTEEPAQTNYTVESAEASYTEEPSQTSCIEEPAQTSYTDSAA 1272
Query: 61 ERPMSERPM----SERPSERPMSERPMSERPSERPSERLMSERP----MSERPSERPMSE 112
+ +E P +E P++ ++ P +E P++ +E P ++ P++ +E
Sbjct: 1273 DTSCTEEPAQTSCTEEPAQTSYTQEPAQTSCTEEPAQTSCTEEPAQTSYTQEPAQTSCTE 1332
Query: 113 RPSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSERPMSERPLK 162
P++ ++ P++ +E P +E P ++ +E P++ ++ P +
Sbjct: 1333 EPAQTSYTQEPAQTSCTEEPAQTSYTEEP-AQTSYTEEPAQTSYTQEPAQ 1381
Score = 36.2 bits (82), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 2 SERPMSERPSDRPMSERPSERPMSERPSL-----RPSERPMSERPSERPMSERPSERPMS 56
+E +E P+ +E P++ E P+ P++ +E P++ E P++ +
Sbjct: 1488 AEASYTEEPAQTSYAEEPAQTSYPEEPAQTSYAEEPAQTSYAEEPAQTSYPEEPAQTSYT 1547
Query: 57 ERPSERPMSERPMS----ERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSE 112
E P++ ++ P E P++ +E P +E P++ +E P SE P
Sbjct: 1548 EEPAQTSYAKEPAQTSYPEEPAQTSYAEEPAQTSYAEEPAQTSYAEEPAQTSYSEEPAQT 1607
Query: 113 R 113
R
Sbjct: 1608 R 1608
>sp|A1VG83|IF2_DESVV Translation initiation factor IF-2 OS=Desulfovibrio vulgaris subsp.
vulgaris (strain DP4) GN=infB PE=3 SV=1
Length = 1079
Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 2/124 (1%)
Query: 31 RPSERPMSERPSERPMSERPSERPMSERPSERPMSERPMSERPSERPMSERPMSER--PS 88
R +R + ++ P E + P + P +++P +P++ P +E R P
Sbjct: 75 RDGDRASARAEAKAPEQEATAAMPETSAPERAEEADKPAVAKPAKAPETEAHARARKEPQ 134
Query: 89 ERPSERLMSERPMSERPSERPMSERPSERPMSERPSERPMSERPMSERPSERPMSERPMS 148
P + + RP P + + P+E P E P+ + + + P SERP +
Sbjct: 135 AEPVKARIIRRPDEPAPVAKVVEAAPAETPAPEAPAVKATVTAEAAPAKTVEPESERPQA 194
Query: 149 ERPS 152
++P+
Sbjct: 195 DKPA 198
Score = 37.0 bits (84), Expect = 0.21, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 2 SERPMSERPSDRPMSE---RPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSER 58
+++P +P+ P +E R + P +E R RP P + + P+E P E
Sbjct: 109 ADKPAVAKPAKAPETEAHARARKEPQAEPVKARIIRRPDEPAPVAKVVEAAPAETPAPEA 168
Query: 59 PSERPMSERPMSERPSERPMSERPMSERPS 88
P+ + + + P SERP +++P+
Sbjct: 169 PAVKATVTAEAAPAKTVEPESERPQADKPA 198
Score = 32.0 bits (71), Expect = 6.5, Method: Composition-based stats.
Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 7/131 (5%)
Query: 2 SERPMSERPSDRPMSERPSERPMSERPSL-RPSERPMSE---RPSERPMSERPSERPMSE 57
++ P E + P + P +++P++ +P++ P +E R + P +E P + +
Sbjct: 86 AKAPEQEATAAMPETSAPERAEEADKPAVAKPAKAPETEAHARARKEPQAE-PVKARIIR 144
Query: 58 RPSERPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERP-SERPMSERPSE 116
RP E + + P+E P E P + + + P SERP +++P + R
Sbjct: 145 RPDEPAPVAKVVEAAPAETPAPEAPAVKATVTAEAAPAKTVEPESERPQADKPATARVV- 203
Query: 117 RPMSERPSERP 127
RP + S P
Sbjct: 204 RPATPDASAVP 214
>sp|Q72ER1|IF2_DESVH Translation initiation factor IF-2 OS=Desulfovibrio vulgaris
(strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=infB
PE=3 SV=1
Length = 1079
Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 2/124 (1%)
Query: 31 RPSERPMSERPSERPMSERPSERPMSERPSERPMSERPMSERPSERPMSERPMSER--PS 88
R +R + ++ P E + P + P +++P +P++ P +E R P
Sbjct: 75 RDGDRASARAEAKAPEQEATAAMPETSAPERAEEADKPAVAKPAKAPETEAHARARKEPQ 134
Query: 89 ERPSERLMSERPMSERPSERPMSERPSERPMSERPSERPMSERPMSERPSERPMSERPMS 148
P + + RP P + + P+E P E P+ + + + P SERP +
Sbjct: 135 AEPVKARIIRRPDEPAPVAKVVEAAPAETPAPEAPAVKATVTAEAAPAKTVEPESERPQA 194
Query: 149 ERPS 152
++P+
Sbjct: 195 DKPA 198
Score = 37.0 bits (84), Expect = 0.21, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 2 SERPMSERPSDRPMSE---RPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSER 58
+++P +P+ P +E R + P +E R RP P + + P+E P E
Sbjct: 109 ADKPAVAKPAKAPETEAHARARKEPQAEPVKARIIRRPDEPAPVAKVVEAAPAETPAPEA 168
Query: 59 PSERPMSERPMSERPSERPMSERPMSERPS 88
P+ + + + P SERP +++P+
Sbjct: 169 PAVKATVTAEAAPAKTVEPESERPQADKPA 198
Score = 32.0 bits (71), Expect = 6.5, Method: Composition-based stats.
Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 7/131 (5%)
Query: 2 SERPMSERPSDRPMSERPSERPMSERPSL-RPSERPMSE---RPSERPMSERPSERPMSE 57
++ P E + P + P +++P++ +P++ P +E R + P +E P + +
Sbjct: 86 AKAPEQEATAAMPETSAPERAEEADKPAVAKPAKAPETEAHARARKEPQAE-PVKARIIR 144
Query: 58 RPSERPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERP-SERPMSERPSE 116
RP E + + P+E P E P + + + P SERP +++P + R
Sbjct: 145 RPDEPAPVAKVVEAAPAETPAPEAPAVKATVTAEAAPAKTVEPESERPQADKPATARVV- 203
Query: 117 RPMSERPSERP 127
RP + S P
Sbjct: 204 RPATPDASAVP 214
>sp|A5GF86|IF2_GEOUR Translation initiation factor IF-2 OS=Geobacter uraniireducens
(strain Rf4) GN=infB PE=3 SV=1
Length = 882
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 7/71 (9%)
Query: 26 ERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPMSERPMSERPSERPM----SER 81
E P L+P ERP +R ++RP + PS P ERP+ +P +ERP S+R +RP +ER
Sbjct: 146 EIPGLKPKERPPVQREAQRP-AVAPSRAP--ERPAAKPGTERPASQRYPDRPAPPRGTER 202
Query: 82 PMSERPSERPS 92
P + R ER +
Sbjct: 203 PSTSRVPERVT 213
Score = 35.0 bits (79), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 10/68 (14%)
Query: 104 RPSERPMSERPSERPMS------ERPSERPMSERPMSERPSERPM----SERPMSERPSE 153
+P ERP +R ++RP ERP+ +P +ERP S+R +RP +ERP + R E
Sbjct: 151 KPKERPPVQREAQRPAVAPSRAPERPAAKPGTERPASQRYPDRPAPPRGTERPSTSRVPE 210
Query: 154 RPMSERPL 161
R PL
Sbjct: 211 RVTPIVPL 218
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 15/101 (14%)
Query: 43 ERPMSERPSERPMSERPSERPMSERPMSERPSERPM---SERPMSERPSERPSERLMSER 99
E+P + R E P +P ERP +R ++RP S P ERP+ +P +ER
Sbjct: 132 EKPTANRARILGRMEIPGLKP-KERPPVQREAQRPAVAPSRAP--ERPAAKPG----TER 184
Query: 100 PMSERPSERPMSERPSERPMSERPSER-----PMSERPMSE 135
P S+R +RP R +ERP + R ER P++ P+ E
Sbjct: 185 PASQRYPDRPAPPRGTERPSTSRVPERVTPIVPLAVPPVGE 225
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 7/57 (12%)
Query: 18 RPSERP----MSERPSLRPS---ERPMSERPSERPMSERPSERPMSERPSERPMSER 67
+P ERP ++RP++ PS ERP ++ +ERP S+R +RP R +ERP + R
Sbjct: 151 KPKERPPVQREAQRPAVAPSRAPERPAAKPGTERPASQRYPDRPAPPRGTERPSTSR 207
>sp|Q06852|SLAP1_CLOTH Cell surface glycoprotein 1 OS=Clostridium thermocellum (strain ATCC
27405 / DSM 1237) GN=olpB PE=4 SV=2
Length = 2313
Score = 42.7 bits (99), Expect = 0.004, Method: Composition-based stats.
Identities = 51/161 (31%), Positives = 71/161 (44%), Gaps = 18/161 (11%)
Query: 2 SERPMSERPSDRPMSE-RPSERPM-SERPSLRPSERPMSERPSERPMSERPSERPMSERP 59
SE P P+D P E PS+ P S+ P+ PS+ P PS+ P PSE P P
Sbjct: 1654 SETPEEPIPTDTPSDEPTPSDEPTPSDEPT--PSDEPT---PSDEPT---PSETPEEPIP 1705
Query: 60 SERPMSERPMSERPS---ERPMSERPMSE---RPSERPSERLMSERPMSE-RPSERPMSE 112
++ P E S+ P+ E S+ P PSE P E + ++ P E PS+ P
Sbjct: 1706 TDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPS 1765
Query: 113 RPSERPMSERPSERPM-SERPMSERPSERPMSERPMSERPS 152
PS+ P SE P P++ P E S+ P+
Sbjct: 1766 DEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPT 1806
Score = 42.7 bits (99), Expect = 0.004, Method: Composition-based stats.
Identities = 51/161 (31%), Positives = 71/161 (44%), Gaps = 18/161 (11%)
Query: 2 SERPMSERPSDRPMSE-RPSERPM-SERPSLRPSERPMSERPSERPMSERPSERPMSERP 59
SE P P+D P E PS+ P S+ P+ PS+ P PS+ P PSE P P
Sbjct: 1740 SETPEEPIPTDTPSDEPTPSDEPTPSDEPT--PSDEPT---PSDEPT---PSETPEEPIP 1791
Query: 60 SERPMSERPMSERPS---ERPMSERPMSE---RPSERPSERLMSERPMSE-RPSERPMSE 112
++ P E S+ P+ E S+ P PSE P E + ++ P E PS+ P
Sbjct: 1792 TDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPS 1851
Query: 113 RPSERPMSERPSERPM-SERPMSERPSERPMSERPMSERPS 152
PS+ P SE P P++ P E S+ P+
Sbjct: 1852 DEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPT 1892
Score = 42.0 bits (97), Expect = 0.006, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 69/163 (42%), Gaps = 17/163 (10%)
Query: 2 SERPMSERPSDRPMSE-RPSERPM-SERPSLRPSERPMSERPSERPMSERPSERPMSERP 59
SE P P+D P E PS+ P S+ P+ PS+ P PS+ P PSE P P
Sbjct: 1458 SETPEEPIPTDTPSDEPTPSDEPTPSDEPT--PSDEPT---PSDEPT---PSETPEEPIP 1509
Query: 60 SERPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPM-SERPSERPMSERPSERP 118
++ P E S+ P+ PS+ P+ E P+ ++ PS+ P PS+ P
Sbjct: 1510 TDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPT---PSDEP 1566
Query: 119 MSERPSERPMSERPMSERPSERPMSERPMSERPSERPMSERPL 161
PS+ P + P E S+ P+ E P+
Sbjct: 1567 T---PSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPI 1606
Score = 42.0 bits (97), Expect = 0.006, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 69/163 (42%), Gaps = 17/163 (10%)
Query: 2 SERPMSERPSDRPMSE-RPSERPM-SERPSLRPSERPMSERPSERPMSERPSERPMSERP 59
SE P P+D P E PS+ P S+ P+ PS+ P PS+ P PSE P P
Sbjct: 1826 SETPEEPIPTDTPSDEPTPSDEPTPSDEPT--PSDEPT---PSDEPT---PSETPEEPIP 1877
Query: 60 SERPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPM-SERPSERPMSERPSERP 118
++ P E S+ P+ PS+ P+ E P+ ++ PS+ P PS+ P
Sbjct: 1878 TDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPT---PSDEP 1934
Query: 119 MSERPSERPMSERPMSERPSERPMSERPMSERPSERPMSERPL 161
PS+ P + P E S+ P+ E P+
Sbjct: 1935 T---PSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPI 1974
Score = 42.0 bits (97), Expect = 0.007, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 59/153 (38%), Gaps = 10/153 (6%)
Query: 10 PSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPM-SERP 68
PSD P PSE P P+ PS+ P PS+ P PS+ P SE P
Sbjct: 1647 PSDEPT---PSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPT---PSDEPTPSETP 1700
Query: 69 MSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMSERPSERPM 128
P++ P E S+ P+ E S+ P+ SE P E ++ PS+ P
Sbjct: 1701 EEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTP---SETPEEPIPTDTPSDEPT 1757
Query: 129 SERPMSERPSERPMSERPMSERPSERPMSERPL 161
+ P E S+ P+ E P+
Sbjct: 1758 PSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPI 1790
Score = 42.0 bits (97), Expect = 0.007, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 59/153 (38%), Gaps = 10/153 (6%)
Query: 10 PSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPM-SERP 68
PSD P PSE P P+ PS+ P PS+ P PS+ P SE P
Sbjct: 1733 PSDEPT---PSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPT---PSDEPTPSETP 1786
Query: 69 MSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMSERPSERPM 128
P++ P E S+ P+ E S+ P+ SE P E ++ PS+ P
Sbjct: 1787 EEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTP---SETPEEPIPTDTPSDEPT 1843
Query: 129 SERPMSERPSERPMSERPMSERPSERPMSERPL 161
+ P E S+ P+ E P+
Sbjct: 1844 PSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPI 1876
Score = 41.2 bits (95), Expect = 0.011, Method: Composition-based stats.
Identities = 46/166 (27%), Positives = 66/166 (39%), Gaps = 11/166 (6%)
Query: 2 SERPMSERPSDRPMSE-RPSERPM-SERPSLRPSERPMSERPSERPM-SERPSERPMSER 58
SE P P+D P E PS+ P S+ P+ PS+ P PS+ P SE P E ++
Sbjct: 1501 SETPEEPIPTDTPSDEPTPSDEPTPSDEPT--PSDEPT---PSDEPTPSETPEEPIPTDT 1555
Query: 59 PSERPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERP 118
PS+ P + P E S+ P+ E SE P E ++ PS+ P
Sbjct: 1556 PSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEP 1615
Query: 119 MSE---RPSERPMSERPMSERPSERPMSERPMSERPSERPMSERPL 161
PS+ P + P E S+ P+ E P+
Sbjct: 1616 TPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPI 1661
Score = 40.4 bits (93), Expect = 0.020, Method: Composition-based stats.
Identities = 47/167 (28%), Positives = 67/167 (40%), Gaps = 13/167 (7%)
Query: 2 SERPMSERPSDRPMSE-RPSERPM-SERPSLRPSERPMSE-RPSERPMSE---RPSERPM 55
SE P P+D P E PS+ P S+ P+ P E PS+ P PSE P
Sbjct: 1544 SETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPE 1603
Query: 56 SERPSERPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPM-SERP 114
P++ P E S+ P+ PS+ P+ S+ P PS+ P SE P
Sbjct: 1604 EPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTP---SDEPT---PSDEPTPSETP 1657
Query: 115 SERPMSERPSERPMSERPMSERPSERPMSERPMSERPSERPMSERPL 161
E ++ PS+ P + P E S+ P+ E P+
Sbjct: 1658 EEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPI 1704
Score = 40.0 bits (92), Expect = 0.026, Method: Composition-based stats.
Identities = 48/163 (29%), Positives = 69/163 (42%), Gaps = 17/163 (10%)
Query: 2 SERPMSERPSDRPMSE-RPSERPM-SERPSLRPSERPMSERPSERPMSERPSERPMSERP 59
SE P P+D P E PS+ P S+ P+ PS+ P PS+ P PS+ P P
Sbjct: 1599 SETPEEPIPTDTPSDEPTPSDEPTPSDEPT--PSDEPT---PSDEPT---PSDEPT---P 1647
Query: 60 SERPM-SERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERP 118
S+ P SE P P++ P E S+ P+ E S+ P+ SE P E
Sbjct: 1648 SDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTP---SETPEEPI 1704
Query: 119 MSERPSERPMSERPMSERPSERPMSERPMSERPSERPMSERPL 161
++ PS+ P + P E S+ P+ E P+
Sbjct: 1705 PTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPI 1747
Score = 39.7 bits (91), Expect = 0.032, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 69/155 (44%), Gaps = 20/155 (12%)
Query: 7 SERPSDRPMSERPSERPM-SERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPMS 65
++ PSD P PS+ P S+ P+ PS+ P PS+ P PSE P P++ P
Sbjct: 1381 TDTPSDEPT---PSDEPTPSDEPT--PSDEPT---PSDEPT---PSETPEEPIPTDTPSD 1429
Query: 66 ERPMSERPS---ERPMSERPMSE---RPSERPSERLMSERPMSE-RPSERPMSERPSERP 118
E S+ P+ E S+ P PSE P E + ++ P E PS+ P
Sbjct: 1430 EPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPS 1489
Query: 119 MSERPSERPM-SERPMSERPSERPMSERPMSERPS 152
PS+ P SE P P++ P E S+ P+
Sbjct: 1490 DEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPT 1524
Score = 39.7 bits (91), Expect = 0.037, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 55/155 (35%), Gaps = 10/155 (6%)
Query: 10 PSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSE---RPSERPMSE 66
PSD P PSE P P+ PS+ P PS+ P PSE P
Sbjct: 1408 PSDEPT---PSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEP 1464
Query: 67 RPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMSE-RPSE 125
P E S+ P PS+ P+ PSE P P++ P E PS+
Sbjct: 1465 IPTDTPSDEPTPSDEPT---PSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSD 1521
Query: 126 RPMSERPMSERPSERPMSERPMSERPSERPMSERP 160
P + P E SE P E ++ P
Sbjct: 1522 EPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTP 1556
Score = 39.7 bits (91), Expect = 0.037, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 55/155 (35%), Gaps = 10/155 (6%)
Query: 10 PSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSE---RPSERPMSE 66
PSD P PSE P P+ PS+ P PS+ P PSE P
Sbjct: 1690 PSDEPT---PSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEP 1746
Query: 67 RPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMSE-RPSE 125
P E S+ P PS+ P+ PSE P P++ P E PS+
Sbjct: 1747 IPTDTPSDEPTPSDEPT---PSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSD 1803
Query: 126 RPMSERPMSERPSERPMSERPMSERPSERPMSERP 160
P + P E SE P E ++ P
Sbjct: 1804 EPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTP 1838
Score = 39.7 bits (91), Expect = 0.037, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 55/155 (35%), Gaps = 10/155 (6%)
Query: 10 PSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSE---RPSERPMSE 66
PSD P PSE P P+ PS+ P PS+ P PSE P
Sbjct: 1776 PSDEPT---PSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEP 1832
Query: 67 RPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMSE-RPSE 125
P E S+ P PS+ P+ PSE P P++ P E PS+
Sbjct: 1833 IPTDTPSDEPTPSDEPT---PSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSD 1889
Query: 126 RPMSERPMSERPSERPMSERPMSERPSERPMSERP 160
P + P E SE P E ++ P
Sbjct: 1890 EPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTP 1924
Score = 38.9 bits (89), Expect = 0.056, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 63/154 (40%), Gaps = 11/154 (7%)
Query: 2 SERPMSERPSDRPMSE-RPSERPM-SERPSLRPSERPMSERPSERPM-SERPSERPMSER 58
SE P P+D P E PS+ P S+ P+ PS+ P PS+ P SE P E ++
Sbjct: 1869 SETPEEPIPTDTPSDEPTPSDEPTPSDEPT--PSDEPT---PSDEPTPSETPEEPIPTDT 1923
Query: 59 PSERPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERP 118
PS+ P + P E S+ P+ E SE P E ++ PS+ P
Sbjct: 1924 PSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEP 1983
Query: 119 MSERPSERPMSERPMSERPSERPMSERPMSERPS 152
PS+ P + P E S+ P+
Sbjct: 1984 T---PSDEPTPSDEPTPSDEPTPSDEPTPSDEPT 2014
Score = 38.1 bits (87), Expect = 0.10, Method: Composition-based stats.
Identities = 50/152 (32%), Positives = 69/152 (45%), Gaps = 20/152 (13%)
Query: 10 PSDRPMSERPSERPM-SERPSLRPSERPMSERPSERPMSE-RPSERPMSERPSERPM-SE 66
PSD P PS+ P S+ P+ PSE P P++ P E PS+ P PS+ P S+
Sbjct: 1580 PSDEPT---PSDEPTPSDEPT--PSETPEEPIPTDTPSDEPTPSDEPT---PSDEPTPSD 1631
Query: 67 RPMSERPSERPM-SERPMSE---RPSERPSERLMSERPMSE-RPSERPMSERPSERPMSE 121
P PS+ P S+ P PSE P E + ++ P E PS+ P
Sbjct: 1632 EPT---PSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEP 1688
Query: 122 RPSERPM-SERPMSERPSERPMSERPMSERPS 152
PS+ P SE P P++ P E S+ P+
Sbjct: 1689 TPSDEPTPSETPEEPIPTDTPSDEPTPSDEPT 1720
Score = 36.2 bits (82), Expect = 0.40, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 61/152 (40%), Gaps = 23/152 (15%)
Query: 10 PSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPMSERPM 69
PSD P PSE P P+ PS+ P PS+ P PS+ P PS+ P
Sbjct: 1537 PSDEPT---PSETPEEPIPTDTPSDEPT---PSDEPT---PSDEPT---PSDEPTPSDEP 1584
Query: 70 SERPSERPMSERPMSERPSERPSERLMSERPMSE-RPSERPMSERPSERPMSERPSERPM 128
+ P E PSE P E + ++ P E PS+ P PS+ P PS+ P
Sbjct: 1585 TPSDEPTPSDEPT----PSETPEEPIPTDTPSDEPTPSDEPT---PSDEPT---PSDEPT 1634
Query: 129 SERPMSERPSERPMSERPMSERPSERPMSERP 160
+ P E SE P E ++ P
Sbjct: 1635 PSDEPTPSDEPTPSDEPTPSETPEEPIPTDTP 1666
>sp|B9M1G0|IF2_GEOSF Translation initiation factor IF-2 OS=Geobacter sp. (strain FRC-32)
GN=infB PE=3 SV=1
Length = 908
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 13/86 (15%)
Query: 15 MSERPSERPMSERPSLRPSERPMSERPSERP-MSERPSE-RPMSERP-------SERPMS 65
+ ERP RP +ERP+ P +RP +RP +RP RP+ RP +RP +ERP++
Sbjct: 167 VVERPEARPSAERPA--PGQRPEGQRPGQRPEGGYRPAGPRPAGQRPEGPRPGYTERPVT 224
Query: 66 ERPMSERPSERPMSERPMSERPSERP 91
P ERP + ERP P E P
Sbjct: 225 RGP--ERPGQARGPERPAPVVPLEMP 248
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 14/86 (16%)
Query: 83 MSERPSERPSERLMSERPMSERPSERPMSERPSERP-MSERPSE-RPMSERPMSERP--S 138
+ ERP RPS +ERP P +RP +RP +RP RP+ RP +RP RP +
Sbjct: 167 VVERPEARPS----AERPA---PGQRPEGQRPGQRPEGGYRPAGPRPAGQRPEGPRPGYT 219
Query: 139 ERPMS---ERPMSERPSERPMSERPL 161
ERP++ ERP R ERP PL
Sbjct: 220 ERPVTRGPERPGQARGPERPAPVVPL 245
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 50/108 (46%), Gaps = 22/108 (20%)
Query: 49 RPSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPS-E 107
+P+ R + ERP RP +ERP +RP +RP +RP RP RP+ +
Sbjct: 162 QPTAR-VVERPEARPSAERPAP--------GQRPEGQRPGQRPEG---GYRPAGPRPAGQ 209
Query: 108 RPMSERPSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSERP 155
RP RP +ERP++ P ERP + ERP P E P
Sbjct: 210 RPEGPRPGY-------TERPVTRGP--ERPGQARGPERPAPVVPLEMP 248
>sp|Q9Y6V0|PCLO_HUMAN Protein piccolo OS=Homo sapiens GN=PCLO PE=1 SV=4
Length = 5065
Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 93/163 (57%), Gaps = 24/163 (14%)
Query: 1 MSERPMSERPSDRP-MSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSE-- 57
++++P + +P +P + +P +P L P++ P + SE+P SE+P + +++
Sbjct: 342 LAQQPGTVKPPVQPPGTTKPPAQP------LGPAKPPAQQTGSEKPSSEQPGPKALAQPP 395
Query: 58 ----RPSERPMSERPMSERPSE-RPMSERPMSERPSERPSERLMSERPMSER-PSERPMS 111
P+++P +P +++ +P++++P + P++ P ++ P+ + PS++P S
Sbjct: 396 GVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGP---TKTPVQAKPPSQQPGS 452
Query: 112 ER-PSERPMSERPS-ERPMSERPMSERPSERPMSERPMSERPS 152
+ P ++P +PS ++P S +P PS++P S +P +++PS
Sbjct: 453 TKPPPQQPGPAKPSPQQPGSTKP----PSQQPGSAKPSAQQPS 491
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 79/145 (54%), Gaps = 24/145 (16%)
Query: 5 PMSERPSDRPMSERPSERPMSERPSL--RPSERPMSERP------SERPMSERP------ 50
P + S++P SE+P + +++ P + P+++P +P + +P++++P
Sbjct: 372 PAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPA 431
Query: 51 -----SERPMSERP-SERPMSERPMSERPS-ERPMSERPMSERPSERPSERLMSERPMSE 103
++ P+ +P S++P S +P ++P +P ++P S +P PS++ S +P ++
Sbjct: 432 KAPGPTKTPVQAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKP---PSQQPGSAKPSAQ 488
Query: 104 RPSERPMSERPSERPMSERPSERPM 128
+PS S + S +P+S+ S +P+
Sbjct: 489 QPSPAKPSAQQSTKPVSQTGSGKPL 513
>sp|Q67P86|IF2_SYMTH Translation initiation factor IF-2 OS=Symbiobacterium thermophilum
(strain T / IAM 14863) GN=infB PE=3 SV=1
Length = 1044
Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 20/63 (31%)
Query: 13 RPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERP-SERPMSERPMSE 71
RP+SE+ RP++ER RP++ER RP++ERP +RP++ERP++E
Sbjct: 102 RPLSEKRERRPLTER----------------RPLAER---RPLAERPLVDRPVTERPLAE 142
Query: 72 RPS 74
RP+
Sbjct: 143 RPA 145
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 34/45 (75%), Gaps = 4/45 (8%)
Query: 98 ERPMSERPSERPMSER---PSERPMSERP-SERPMSERPMSERPS 138
+RP+SE+ RP++ER RP++ERP +RP++ERP++ERP+
Sbjct: 101 QRPLSEKRERRPLTERRPLAERRPLAERPLVDRPVTERPLAERPA 145
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 16/60 (26%)
Query: 66 ERPMSERPSERPMSER-PMSERPSERPSERLMSERPMSERPSERPMSERPSERPMSERPS 124
+RP+SE+ RP++ER P++ER RP ++ERP+ +RP +ERP++ERP+
Sbjct: 101 QRPLSEKRERRPLTERRPLAER---RP----LAERPLVDRPV--------TERPLAERPA 145
>sp|Q9NZT2|OGFR_HUMAN Opioid growth factor receptor OS=Homo sapiens GN=OGFR PE=1 SV=3
Length = 677
Score = 35.4 bits (80), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 59/131 (45%), Gaps = 24/131 (18%)
Query: 14 PMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMS---ERPSERPMSERPMS 70
P + P+E P SE P RP+ P + P+E P SE P RP + P+E P S
Sbjct: 529 PAGDEPAESP-SETPGPRPA-GPAGDEPAESP-SETPGPRPAGPAGDEPAESP------S 579
Query: 71 ERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMSERPSERPMSE 130
E P P P + P+E PSE RP P + P+E P SE P RP
Sbjct: 580 ETPGPSPAG--PTRDEPAESPSE-TPGPRPAG------PAGDEPAESP-SETPGPRPAG- 628
Query: 131 RPMSERPSERP 141
P + P+E P
Sbjct: 629 -PAGDEPAESP 638
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 60/136 (44%), Gaps = 29/136 (21%)
Query: 23 PMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPMSERPMSERPSERPMSERP 82
P + P+ PSE P RP+ P + P+E P SE P RP P + P+E P
Sbjct: 529 PAGDEPAESPSETP-GPRPA-GPAGDEPAESP-SETPGPRPAG--PAGDEPAESP----- 578
Query: 83 MSERPSERPSERLMSERPMSERPSERPMSERPSER---PMSERPSERPMSERPMSERPSE 139
SE P P+ P + P+E P SE P R P + P+E P SE P
Sbjct: 579 -SETPGPSPA------GPTRDEPAESP-SETPGPRPAGPAGDEPAESP------SETPGP 624
Query: 140 RPMSERPMSERPSERP 155
RP P + P+E P
Sbjct: 625 RPAG--PAGDEPAESP 638
>sp|Q80TH2|LAP2_MOUSE Protein LAP2 OS=Mus musculus GN=Erbb2ip PE=1 SV=3
Length = 1402
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 13/127 (10%)
Query: 51 SERPMSERPS--ERPMSERPMSERPSERPMSERPMS--------ERPSERPSERLMSERP 100
S+RP+S R + P + RP S RPS + ER MS PS+RP+ R+ SE
Sbjct: 1115 SQRPLSARAYSIDGPNTSRPQSARPSINEIPERTMSVSDFNYSRTSPSKRPNTRVGSEHS 1174
Query: 101 MSERPSERPMSERPSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSE--RPMSE 158
+ + P + + E+ + +++ + + P + P E +R MSE + +S
Sbjct: 1175 LLDPPGKSKVPHDWREQVLRHIEAKK-LEKHPQTSSPGECCQDDRFMSEEQNHPSGALSH 1233
Query: 159 RPLKDRL 165
R L D L
Sbjct: 1234 RGLPDSL 1240
>sp|P22856|VL96_IRV1 Putative ubiquitin thioesterase L96 OS=Tipula iridescent virus
GN=L96 PE=3 SV=1
Length = 867
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 54/111 (48%), Gaps = 16/111 (14%)
Query: 50 PSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERP 109
PS RP S+ PS R E P P S RP S PS RP S RP S+ PS RP
Sbjct: 449 PSARPRSKSPSVRAEITDDEGETP---PSSVRPKS--PSVRPKSP--SVRPRSKSPSVRP 501
Query: 110 MSERPSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSERPMSERP 160
S PS RP S+ PS R S+ PS RP S + PS RP S+ P
Sbjct: 502 KS--PSARPRSKSPSVR-------SKSPSVRPKSPSVRPKSPSVRPRSKSP 543
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 57/121 (47%), Gaps = 36/121 (29%)
Query: 10 PSDRPMSERPSER-----------PMSERPSLRPSERPMSERPSERPMSERPSERPMSER 58
PS RP S+ PS R P S RP PS RP S PS RP S+ PS RP S
Sbjct: 449 PSARPRSKSPSVRAEITDDEGETPPSSVRPK-SPSVRPKS--PSVRPRSKSPSVRPKS-- 503
Query: 59 PSERPMSERPM--SERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSE 116
PS RP S+ P S+ PS RP S PS RP + PS RP S+ PS
Sbjct: 504 PSARPRSKSPSVRSKSPSVRPKS-------PSVRP-----------KSPSVRPRSKSPSV 545
Query: 117 R 117
R
Sbjct: 546 R 546
>sp|P13993|PRP2_SOYBN Repetitive proline-rich cell wall protein 2 OS=Glycine max GN=PRP2
PE=2 SV=1
Length = 230
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 89/183 (48%), Gaps = 27/183 (14%)
Query: 4 RPMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPS--ERPMSERPSE 61
+P +E+P P+ + P E+P +P + P+ + P E+P +P + P+ + P E
Sbjct: 31 KPPTEKP---PVYKPPVEKPPVYKPPVE--NPPIYKPPVEKPPVYKPPVEKPPVYKPPVE 85
Query: 62 RPMSERPMSERPS------ERPMSERPMSERPS--ERPSERLMSERPMSERPSERPMSER 113
+P +P E+P E+P +P E+P + P E+ +P E+P P+ +
Sbjct: 86 KPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKP---PVYKP 142
Query: 114 PSERPMSERPSERPMSERPMSERPSERPMSERPMSERPS------ERPMSERPLKDRLKL 167
P E+P +P P+ + P+ + P E+P +P E+P E+P +P ++ +
Sbjct: 143 PVEKPPVYKP---PVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPI 199
Query: 168 FSP 170
+ P
Sbjct: 200 YKP 202
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 81/159 (50%), Gaps = 16/159 (10%)
Query: 1 MSERPMSERPSDRPMSERPS-ERPMSERPSLR--PSERPMSERPS--ERPMSERPSERPM 55
+ + P+ + P +P E+P +P E+P + P E+P +P + P+ + P E+P
Sbjct: 59 IYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPP 118
Query: 56 SERPSERPMSERPMSERPSERPMSERPMSERPS--ERPSERLMSERPMSERPSERPMSER 113
+P P+ + P+ + P E+P +P E+P + P E+ +P E+P P+ +
Sbjct: 119 VYKP---PVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKP---PVYKP 172
Query: 114 PSERPMSERPSERPMSERPMSERPSERPMSERPMSERPS 152
P E+P +P P+ + P+ + P E+P +P E+P
Sbjct: 173 PVEKPPVYKP---PVEKPPVYKPPVEKPPIYKPPVEKPP 208
Score = 32.7 bits (73), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 81/157 (51%), Gaps = 17/157 (10%)
Query: 19 PSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPMSERPMSERPSERPM 78
P +P +E+P + +P E+P P+ + P E P +P P+ + P+ + P E+P
Sbjct: 28 PVYKPPTEKPPVY---KPPVEKP---PVYKPPVENPPIYKP---PVEKPPVYKPPVEKPP 78
Query: 79 SERPMSERPS--ERPSERLMSERPMSERPSERPMSERPSER-PMSERPSERPMSERPMSE 135
+P E+P + P E+ +P E+P P+ + P E+ P+ + P E+P +P E
Sbjct: 79 VYKPPVEKPPVYKPPVEKPPVYKPPVEKP---PVYKPPVEKPPVYKPPVEKPPVYKPPVE 135
Query: 136 RPS--ERPMSERPMSERPSERPMSERPLKDRLKLFSP 170
+P + P+ + P+ + P E+P +P ++ ++ P
Sbjct: 136 KPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKP 172
>sp|Q2EG98|PK1L3_MOUSE Polycystic kidney disease protein 1-like 3 OS=Mus musculus
GN=Pkd1l3 PE=2 SV=2
Length = 2201
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 73/180 (40%), Gaps = 28/180 (15%)
Query: 7 SERPSDRPMSERPSERPMSERPSLRPSERPMSERP----SERPMSERPSERPMSERPSER 62
SE P+ ++ SE P S P+ S+ P S P S+ P P++ + S
Sbjct: 426 SETPASSSPTQVTSETPASSSPTQVTSDTPASNSPPQGTSDTPGFSSPTQVTTATLVSSS 485
Query: 63 P---MSERPMSERP----SERPMSERP---MSERPSERPSERLMSERPMSERP----SER 108
P S+ P S P S+ P S P SE P+ ++ S+ S P S+
Sbjct: 486 PPQVTSDTPASSSPPQVTSDTPASSSPPQVTSETPASSSPPQVTSDTSASISPPQVISDT 545
Query: 109 PMSERP----SERPMSERPSERPMSERPMSERPSERPMSERPMSERP----SERPMSERP 160
P S P SE P S P+ S+ P S P+ S+ P S P S+ P S P
Sbjct: 546 PASSSPPQVTSETPASSSPTNM-TSDTPASSSPTNM-TSDTPASSSPTNMTSDTPASSSP 603
Score = 32.3 bits (72), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 72/185 (38%), Gaps = 33/185 (17%)
Query: 2 SERPMSERP----SDRPMSERP----SERPMSERPSLRPSERPMSERP----SERPMSER 49
S+ P S P D P S P S+ P S P SE P S P SE P
Sbjct: 348 SDTPASSSPPQGTLDTPSSSSPPQGTSDTPASSSPPQGTSETPASNSPPQGTSETPGFSS 407
Query: 50 PSERPMSERPSERP---MSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERP- 105
P + + S P SE P S P++ SE P S P++ + S+ P S P
Sbjct: 408 PPQVTTATLVSSSPPQVTSETPASSSPTQV-TSETPASSSPTQ-----VTSDTPASNSPP 461
Query: 106 ---SERPMSERPSERPMSERPSERP---MSERPMSERPSERPMSERPMSERP----SERP 155
S+ P P++ + S P S+ P S P + S+ P S P SE P
Sbjct: 462 QGTSDTPGFSSPTQVTTATLVSSSPPQVTSDTPASSSPPQV-TSDTPASSSPPQVTSETP 520
Query: 156 MSERP 160
S P
Sbjct: 521 ASSSP 525
>sp|Q40375|PRP2_MEDTR Repetitive proline-rich cell wall protein 2 OS=Medicago truncatula
GN=PRP2 PE=2 SV=1
Length = 371
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 93/180 (51%), Gaps = 16/180 (8%)
Query: 1 MSERPMSERPSDRPMSERPS-ERPMSERPSLR--PSERPMSERPS--ERPMSERPSERPM 55
+ + P+ + P +P E+P +P E+P + P E+P +P + P+ + P E+P
Sbjct: 64 VYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPP 123
Query: 56 SERPSERPMSERPMSERPSERPMSERPMSERPS--ERPSERLMSERPMSERPSERPMSER 113
+P P+ + P+ + P E+P +P E+P + P E+ +P E+P P+ +
Sbjct: 124 VYKP---PVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKP---PVYKP 177
Query: 114 PSER-PMSERPSERPMSERPMSERPS--ERPMSERPMSERPSERPMSERPLKDRLKLFSP 170
P E+ P+ + P E+P +P E+P + P+ + P+ + P E+P +P ++ ++ P
Sbjct: 178 PVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPIYKP 237
>sp|Q5HJU7|PLS_STAAC Putative surface protein SACOL0050 OS=Staphylococcus aureus (strain
COL) GN=SACOL0050 PE=4 SV=1
Length = 1548
Score = 32.7 bits (73), Expect = 3.8, Method: Composition-based stats.
Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 14/152 (9%)
Query: 12 DRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPMSERPMSE 71
+ P +E + E P +++ E P + +E +++ E P +E
Sbjct: 127 EAPKAEGTDKVETEEAPKAEETDKATEEAPKTEETDKATTEEAPKAEETDKATEEAPKTE 186
Query: 72 RPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERP----------SERPMSE 121
+ E P +E S+ +E E P +E S+ E P E P +E
Sbjct: 187 ETDKATTEEAPAAEETSKAATE----EAPKAEETSKAATEEAPKAEETEKTATEEAPKTE 242
Query: 122 RPSERPMSERPMSERPSERPMSERPMSERPSE 153
+ E P +E S+ + P +E ++
Sbjct: 243 ETDKVETEEAPKAEETSKAATEKAPKAEETNK 274
>sp|P13608|PGCA_BOVIN Aggrecan core protein OS=Bos taurus GN=ACAN PE=1 SV=3
Length = 2364
Score = 32.3 bits (72), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 53/114 (46%), Gaps = 30/114 (26%)
Query: 19 PSERPMSERPSLRPSERPMSERPSERPMSERPSERPM---SERPSERPM-SERPMSERPS 74
PSE+P PSE+P PSE P PSE+P PSE+P+ SE P PS
Sbjct: 814 PSEKPF-------PSEKPF---PSEEPF---PSEKPFPPEELFPSEKPIPSEEPF---PS 857
Query: 75 ERPMSERPMSERPSERPSERLM-SERPMSERPSERPMSERPSERPMSERPSERP 127
E P PSE+ + SE P PSE+P PSE P PSE P
Sbjct: 858 EEPFPSEKPFPPEEPFPSEKPIPSEEPF---PSEKPF---PSEEPF---PSEEP 902
Score = 31.6 bits (70), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 49/112 (43%), Gaps = 44/112 (39%)
Query: 2 SERPMSERPSDRPMSERPSERPM-SERPS----LRPSERPMSERPSERPMSERPSERPMS 56
SE+P PS++P PSE P SE+P L PSE+P+ PSE P PSE P
Sbjct: 815 SEKPF---PSEKPF---PSEEPFPSEKPFPPEELFPSEKPI---PSEEPF---PSEEPFP 862
Query: 57 ER---------------PSERPMSERPMSERPSERPM-SERPMSERPSERPS 92
PSE P PSE+P SE P PSE PS
Sbjct: 863 SEKPFPPEEPFPSEKPIPSEEPF--------PSEKPFPSEEPF---PSEEPS 903
>sp|B0T167|IF2_CAUSK Translation initiation factor IF-2 OS=Caulobacter sp. (strain K31)
GN=infB PE=3 SV=1
Length = 1045
Score = 31.6 bits (70), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 11 SDRPMSERP-SERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPMSERPM 69
DRP +RP +RP ++R + RP + P ++R + RP + P P E ++RP
Sbjct: 252 GDRPQGDRPQGDRPFNQR-APRP-DGPYNQR-TPRPDAGGPPRGPRPEGAGGF-RNDRPQ 307
Query: 70 SERP-SERPMSERPMSERPSE 89
+RP +RP +RP +RP++
Sbjct: 308 GDRPQGDRPQGDRPQGDRPTQ 328
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.126 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,797,440
Number of Sequences: 539616
Number of extensions: 5565173
Number of successful extensions: 38036
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 1272
Number of HSP's that attempted gapping in prelim test: 24234
Number of HSP's gapped (non-prelim): 7075
length of query: 351
length of database: 191,569,459
effective HSP length: 118
effective length of query: 233
effective length of database: 127,894,771
effective search space: 29799481643
effective search space used: 29799481643
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)