Query psy5717
Match_columns 351
No_of_seqs 3 out of 5
Neff 1.1
Searched_HMMs 29240
Date Sat Aug 17 00:49:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5717.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5717hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ojl_A Hypothetical protein; B 25.3 44 0.0015 26.5 2.7 66 278-343 12-85 (108)
2 2npb_A Selenoprotein W; struct 23.9 45 0.0015 25.5 2.4 40 282-321 10-50 (96)
3 1r48_A Proline/betaine transpo 17.9 45 0.0015 21.8 1.1 19 285-304 1-19 (33)
4 2oka_A Hypothetical protein; P 17.1 89 0.003 24.4 2.8 67 277-343 8-82 (104)
5 3dex_A SAV_2001; alpha-beta pr 16.7 78 0.0027 25.1 2.5 66 278-343 16-88 (107)
6 2p0g_A Selenoprotein W-related 14.4 1E+02 0.0034 24.1 2.5 67 277-343 6-80 (105)
7 2fa8_A Hypothetical protein AT 14.2 1.1E+02 0.0038 23.8 2.7 66 278-343 11-84 (105)
8 3bbp_D GRIP and coiled-coil do 7.7 1.5E+02 0.0053 22.7 1.4 12 330-341 54-65 (71)
9 2bn5_A PSI; nuclear protein, s 7.0 1.4E+02 0.0049 20.1 0.8 13 294-306 20-32 (33)
10 1g25_A CDK-activating kinase a 6.7 1.5E+02 0.0051 18.9 0.8 10 281-290 22-31 (65)
No 1
>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium; 2.10A {Bordetella parapertussis}
Probab=25.33 E-value=44 Score=26.53 Aligned_cols=66 Identities=20% Similarity=0.390 Sum_probs=46.2
Q ss_pred eEEEEeecCccchhhhhhhhhhhhhccCCcceeeehhcccceee---eeee---eccccc--hHHHHHHHHHhh
Q psy5717 278 AVRLSVECGHTLRTEWRAESIDQQIKGNDTELKFTERQRGKMEC---GFAI---SESNGL--KNELKRLERKKM 343 (351)
Q Consensus 278 avrlsvecghtlrtewraesidqqikgndtelkfterqrgkmec---gfai---sesngl--knelkrlerkkm 343 (351)
.+-...-||-.+|..|-|..|-+++.+...++.+..-..|.+|- |--| .+.+|. -.|||++-|..+
T Consensus 12 ~I~YC~~C~w~lRa~~laqeLl~tF~~~l~eV~L~P~~~G~FeV~vng~lVwsRk~~ggFPe~keLkq~Vrd~i 85 (108)
T 2ojl_A 12 AIQYCTQCQWLLRAAWMAQELLSTFGADLGEVALVPGTGGVFRIHYNGAPLWDREVDGGFPEAKVLKQRVRDHL 85 (108)
T ss_dssp EEEEETTTTCHHHHHHHHHHHHHHHGGGSSEEEEEEECTTCEEEEETTEEEEEHHHHCSCCCHHHHHHHHHHHC
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcccceEEEEeCCCceEEEEECCEEEEEEccCCCCCCHHHHHHHHHHHh
Confidence 34445569999999999999999998777778777777887765 2222 233333 467787777654
No 2
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=23.91 E-value=45 Score=25.46 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=28.6
Q ss_pred EeecCccchhhhhhhhhhhhhccC-Ccceeeehhcccceee
Q psy5717 282 SVECGHTLRTEWRAESIDQQIKGN-DTELKFTERQRGKMEC 321 (351)
Q Consensus 282 svecghtlrtewraesidqqikgn-dtelkfterqrgkmec 321 (351)
..-||-.+|..|-|..|-++.-+. +.++..+...-|.+|-
T Consensus 10 C~~C~y~~ra~~laqeLl~~Fp~~l~V~~~l~p~~~G~FEV 50 (96)
T 2npb_A 10 SGACGYKPKYLQLKEKLEHEFPGCLDICGEGTPQVTGFFEV 50 (96)
T ss_dssp CCCSCHHHHHHHHHHHHHHHSBTTEEEEECCCSSCCSCCEE
T ss_pred cCCCCCHHHHHHHHHHHHHhCCcceEEEEEEcCCCCcEEEE
Confidence 345999999999999999998653 2244555555576665
No 3
>1r48_A Proline/betaine transporter; osmosensor, cytoplasmic, coiled-coil, antiparallel, two- stranded homodimer, transport protein; NMR {Synthetic} SCOP: h.4.15.1
Probab=17.95 E-value=45 Score=21.82 Aligned_cols=19 Identities=32% Similarity=0.592 Sum_probs=16.1
Q ss_pred cCccchhhhhhhhhhhhhcc
Q psy5717 285 CGHTLRTEWRAESIDQQIKG 304 (351)
Q Consensus 285 cghtlrtewraesidqqikg 304 (351)
||| ---||.-|.|++||.+
T Consensus 1 ~~~-Dnie~~iedi~~ei~~ 19 (33)
T 1r48_A 1 CGG-DNIEQKIDDIDHEIAD 19 (33)
T ss_dssp CCT-THHHHHHHHHHHHHHH
T ss_pred CCc-ccHHHhhhhHHHHHHH
Confidence 888 5679999999999864
No 4
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=17.05 E-value=89 Score=24.40 Aligned_cols=67 Identities=16% Similarity=0.390 Sum_probs=45.5
Q ss_pred eeEEEEeecCccchhhhhhhhhhhhhccCCcceeeehhcccceee---eeee---eccccc--hHHHHHHHHHhh
Q psy5717 277 MAVRLSVECGHTLRTEWRAESIDQQIKGNDTELKFTERQRGKMEC---GFAI---SESNGL--KNELKRLERKKM 343 (351)
Q Consensus 277 mavrlsvecghtlrtewraesidqqikgndtelkfterqrgkmec---gfai---sesngl--knelkrlerkkm 343 (351)
+.+-...-||-.+|..|-|..|-+++-+.-.++....-..|.+|- |--| -+.+|. -.|||++-|..+
T Consensus 8 V~I~YC~~C~~~~Ra~~laqeLl~tF~~~l~~v~l~P~~~G~FEV~vng~lV~SKk~~ggFPe~~eLkq~Vrd~i 82 (104)
T 2oka_A 8 IVITYCTQCQWLLRAAWLAQELLSTFADDLGKVCLEPGTGGVFRITCDGVQVWERKADGGFPEAKALKQRVRDRI 82 (104)
T ss_dssp EEEEEETTTTCHHHHHHHHHHHHHHSTTTCSEEEEEEECTTCEEEEETTEEEEEHHHHTSCCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHcCcccceEEEEeCCCceEEEEECCEEEEEEecCCCCCCHHHHHHHHHHHh
Confidence 445556679999999999999999987755567776667777765 2222 122332 357777776654
No 5
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=16.73 E-value=78 Score=25.11 Aligned_cols=66 Identities=20% Similarity=0.370 Sum_probs=42.8
Q ss_pred eEEEEeecCccchhhhhhhhhhhhhccCCcceeeehhcccceee---eeeeec--cccc--hHHHHHHHHHhh
Q psy5717 278 AVRLSVECGHTLRTEWRAESIDQQIKGNDTELKFTERQRGKMEC---GFAISE--SNGL--KNELKRLERKKM 343 (351)
Q Consensus 278 avrlsvecghtlrtewraesidqqikgndtelkfterqrgkmec---gfaise--sngl--knelkrlerkkm 343 (351)
.+....-||-.+|..|-|..|-+.+.+.-.++.+.....|.+|- |--|-. .+|. -+|||++-|.++
T Consensus 16 ~I~YC~~C~w~lRa~~laqeLl~tF~~~l~eVsL~Pg~gG~FeV~vdg~lVwsRk~gGFPd~keLkq~VRd~i 88 (107)
T 3dex_A 16 QIEYCTQCRWLPRAAWLAQELLTTFETELTELALKPGTGGVFVVRVDDEVVWDRREQGFPEPTAVKRLVRDRV 88 (107)
T ss_dssp EEEEETTTTCHHHHHHHHHHHHHHSTTTEEEEEEEEESSSCEEEEETTEEEEEHHHHCSCCHHHHHHHHHHTT
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcccccceEEEEeCCCceEEEEECCEEEEEecCCCCCCHHHHHHHHHHHh
Confidence 34445569999999999999999997765566666666776554 111111 1222 357777777653
No 6
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}
Probab=14.38 E-value=1e+02 Score=24.12 Aligned_cols=67 Identities=18% Similarity=0.393 Sum_probs=44.1
Q ss_pred eeEEEEeecCccchhhhhhhhhhhhhccCCcceeeehhcccceee---eeee---eccccc--hHHHHHHHHHhh
Q psy5717 277 MAVRLSVECGHTLRTEWRAESIDQQIKGNDTELKFTERQRGKMEC---GFAI---SESNGL--KNELKRLERKKM 343 (351)
Q Consensus 277 mavrlsvecghtlrtewraesidqqikgndtelkfterqrgkmec---gfai---sesngl--knelkrlerkkm 343 (351)
+.+-...-||-.+|..|-|..|-+.+-+.-.++....-..|.+|- |--| -+.+|. -.|||++-|..+
T Consensus 6 V~I~YC~~C~w~~Ra~~laqeLl~tF~~~l~~v~l~P~~~G~FEV~vng~lV~SKk~~ggFPe~~eLkq~Vrd~i 80 (105)
T 2p0g_A 6 IEIYYCRQCNWMLRSAWLSQELLHTFSEEIEYVALHPDTGGRFEIFCNGVQIWERKQEGGFPEAKVLKQRVRDLI 80 (105)
T ss_dssp EEEEEETTTTCHHHHHHHHHHHHHHTTTTEEEEEEEEESTTCEEEEETTEEEEEHHHHTSCCCHHHHHHHHHTTC
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHcCcccceEEEEeCCCceEEEEECCEEEEEEecCCCCCCHHHHHHHHHHHh
Confidence 344555679999999999999999987655566666666777665 2222 122332 356777666543
No 7
>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23
Probab=14.19 E-value=1.1e+02 Score=23.77 Aligned_cols=66 Identities=27% Similarity=0.442 Sum_probs=43.4
Q ss_pred eEEEEeecCccchhhhhhhhhhhhhccCCcceeeehhcccceeeee---ee---eccccc--hHHHHHHHHHhh
Q psy5717 278 AVRLSVECGHTLRTEWRAESIDQQIKGNDTELKFTERQRGKMECGF---AI---SESNGL--KNELKRLERKKM 343 (351)
Q Consensus 278 avrlsvecghtlrtewraesidqqikgndtelkfterqrgkmecgf---ai---sesngl--knelkrlerkkm 343 (351)
.+-...-||-.+|..|-|+.|-+..-+.-.++....-..|.+|.-. -| -+..|. -.|||++-|..+
T Consensus 11 ~I~YC~~C~~~~Ra~~laqeLl~tF~~~l~~V~l~P~~~G~FEV~vng~lV~SKk~~ggFPe~~elkq~Vr~~i 84 (105)
T 2fa8_A 11 AIRYCTQCNWLLRAGWMAQEILQTFASDIGEVSLIPSTGGLFEITVDGTIIWERKRDGGFPGPKELKQRIRDLI 84 (105)
T ss_dssp EEEEETTTTCHHHHHHHHHHHHHHHGGGCSEEEEEEECTTCEEEEETTEEEEEHHHHTSCCCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCcccceEEEEcCCCcEEEEEECCEEEEEeccCCCCCCHHHHHHHHHHHh
Confidence 3444556999999999999999988765446666677788877622 22 122222 356777766544
No 8
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=7.72 E-value=1.5e+02 Score=22.65 Aligned_cols=12 Identities=58% Similarity=0.850 Sum_probs=10.4
Q ss_pred cchHHHHHHHHH
Q psy5717 330 GLKNELKRLERK 341 (351)
Q Consensus 330 glknelkrlerk 341 (351)
-||+|+.||||.
T Consensus 54 lLK~EIRRlERn 65 (71)
T 3bbp_D 54 LLKSEIRRLERN 65 (71)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 489999999985
No 9
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=6.98 E-value=1.4e+02 Score=20.11 Aligned_cols=13 Identities=31% Similarity=0.611 Sum_probs=10.6
Q ss_pred hhhhhhhhhccCC
Q psy5717 294 RAESIDQQIKGND 306 (351)
Q Consensus 294 raesidqqikgnd 306 (351)
-||.|.||+|.+.
T Consensus 20 eAeaIe~q~k~~q 32 (33)
T 2bn5_A 20 EAEAIEKTLKNKQ 32 (33)
T ss_dssp HHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhcc
Confidence 4889999999763
No 10
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=6.68 E-value=1.5e+02 Score=18.91 Aligned_cols=10 Identities=50% Similarity=0.869 Sum_probs=7.5
Q ss_pred EEeecCccch
Q psy5717 281 LSVECGHTLR 290 (351)
Q Consensus 281 lsvecghtlr 290 (351)
+...|||++=
T Consensus 22 ~~~~CgH~fC 31 (65)
T 1g25_A 22 MVNVCGHTLC 31 (65)
T ss_dssp EECTTCCCEE
T ss_pred ecCCCCCHhH
Confidence 4468999974
Done!