Query psy5717
Match_columns 351
No_of_seqs 3 out of 5
Neff 1.1
Searched_HMMs 13730
Date Sat Aug 17 00:49:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5717.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5717hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fa8a1 c.47.1.23 (A:4-89) Hyp 15.5 47 0.0034 23.6 2.7 67 277-343 5-79 (86)
2 d1jhfa1 a.4.5.2 (A:2-72) LexA 11.2 20 0.0015 23.6 -0.4 23 325-347 36-58 (71)
3 d2j01n1 c.21.1.1 (N:1-139) Rib 10.8 68 0.005 24.0 2.5 26 183-208 15-45 (139)
4 d1ubdc2 g.37.1.1 (C:323-350) Y 10.6 23 0.0017 21.7 -0.3 15 319-333 6-20 (28)
5 d1p9oa_ c.72.3.1 (A:) Phosphop 10.2 90 0.0066 24.9 3.2 32 315-349 205-236 (290)
6 d1lr7a1 g.3.11.3 (A:64-88) Dom 8.8 47 0.0034 20.0 0.6 8 263-270 3-10 (26)
7 d1twfi2 g.41.3.1 (I:50-121) RB 8.7 1.2E+02 0.0087 20.7 2.9 12 241-252 55-66 (72)
8 d2b9da1 g.91.1.1 (A:42-93) E7 7.8 16 0.0012 24.4 -2.0 29 236-264 17-46 (52)
9 d1x4da1 d.58.7.1 (A:8-96) Matr 7.7 93 0.0068 20.1 1.9 20 164-183 26-45 (89)
10 d1zj8a1 d.58.36.1 (A:327-406) 7.6 1.1E+02 0.0081 19.6 2.3 38 277-316 16-54 (80)
No 1
>d2fa8a1 c.47.1.23 (A:4-89) Hypothetical protein Atu0228 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=15.46 E-value=47 Score=23.62 Aligned_cols=67 Identities=27% Similarity=0.448 Sum_probs=45.0
Q ss_pred eeEEEEeecCccchhhhhhhhhhhhhccCCcceeeehhcccceeeee---ee---eccccc--hHHHHHHHHHhh
Q psy5717 277 MAVRLSVECGHTLRTEWRAESIDQQIKGNDTELKFTERQRGKMECGF---AI---SESNGL--KNELKRLERKKM 343 (351)
Q Consensus 277 mavrlsvecghtlrtewraesidqqikgndtelkfterqrgkmecgf---ai---sesngl--knelkrlerkkm 343 (351)
..+....-||-.+|..|-|..|-+.....-.++.+..-..|..|--. .| .+.+|. -.|||.+-|.++
T Consensus 5 I~IeYC~~C~w~~Ra~wlaqeLl~tF~~~i~evsL~P~~~G~FeV~v~g~li~srk~~ggFPd~kelkq~VRd~i 79 (86)
T d2fa8a1 5 IAIRYCTQCNWLLRAGWMAQEILQTFASDIGEVSLIPSTGGLFEITVDGTIIWERKRDGGFPGPKELKQRIRDLI 79 (86)
T ss_dssp EEEEEETTTTCHHHHHHHHHHHHHHHGGGCSEEEEEEECTTCEEEEETTEEEEEHHHHTSCCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCCccCceEEEEECCCeEEEEEECCEEEEEeccCCCCCCHHHHHHHHHHhh
Confidence 45666778999999999999999888765567777776777644211 11 122331 357888877664
No 2
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=11.22 E-value=20 Score=23.64 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=18.9
Q ss_pred eeccccchHHHHHHHHHhhhcCC
Q psy5717 325 ISESNGLKNELKRLERKKMLRKP 347 (351)
Q Consensus 325 isesnglknelkrlerkkmlrkp 347 (351)
+.-.+...+.|+.||.|..|.+.
T Consensus 36 ~~S~stv~~~l~~Le~kG~I~r~ 58 (71)
T d1jhfa1 36 FRSPNAAEEHLKALARKGVIEIV 58 (71)
T ss_dssp CSSHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHHHHHHHCcCeecC
Confidence 34567789999999999998763
No 3
>d2j01n1 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus thermophilus [TaxId: 274]}
Probab=10.77 E-value=68 Score=23.99 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=20.9
Q ss_pred ccchhhhhhhhhhhhhh-----ccceeeecc
Q psy5717 183 KLDVRTLILGRMEDIIT-----KTKAVYTHS 208 (351)
Q Consensus 183 kldvrtlilgrmediit-----ktkavyths 208 (351)
-+|....+|||+..+|. |.|..||..
T Consensus 15 viDA~~~~lGRLAs~iA~~L~GK~kp~y~p~ 45 (139)
T d2j01n1 15 LIDAEGKTLGRLATKIATLLRGKHRPDWTPN 45 (139)
T ss_dssp EECCTTSBTTHHHHHHHHHHTTSSSSSCCTT
T ss_pred EEeCCCCchHHHHHHHHHHHhccchheeeec
Confidence 46899999999998886 567778754
No 4
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.57 E-value=23 Score=21.72 Aligned_cols=15 Identities=53% Similarity=0.738 Sum_probs=12.0
Q ss_pred eeeeeeeeccccchH
Q psy5717 319 MECGFAISESNGLKN 333 (351)
Q Consensus 319 mecgfaisesnglkn 333 (351)
.|||-|+-||..||.
T Consensus 6 ~ecgkaf~essklkr 20 (28)
T d1ubdc2 6 AECGKAFVESSKLKR 20 (28)
T ss_dssp TTTCCEESSHHHHHH
T ss_pred HHHhHHHHHHHHHHH
Confidence 589999999876653
No 5
>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.17 E-value=90 Score=24.95 Aligned_cols=32 Identities=13% Similarity=0.088 Sum_probs=23.1
Q ss_pred cccceeeeeeeeccccchHHHHHHHHHhhhcCCCC
Q psy5717 315 QRGKMECGFAISESNGLKNELKRLERKKMLRKPCS 349 (351)
Q Consensus 315 qrgkmecgfaisesnglknelkrlerkkmlrkpcs 349 (351)
+.+..-+||+. |.+ .++|..--++||.+|.|.
T Consensus 205 ~p~~~~VGFka-Etd--~e~l~~~A~~kL~~k~~D 236 (290)
T d1p9oa_ 205 APKAFIISFKL-ETD--PAIVINRARKALEIYQHQ 236 (290)
T ss_dssp CTTSEEEEEEC-CCC--HHHHHHHHHHHHHHHCCS
T ss_pred CCCceEEEEEE-ecC--hHHHHHHHHHHHHHcCCC
Confidence 45778999998 443 455677777888888774
No 6
>d1lr7a1 g.3.11.3 (A:64-88) Domain of follistatin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.76 E-value=47 Score=19.97 Aligned_cols=8 Identities=50% Similarity=1.111 Sum_probs=6.1
Q ss_pred ccCcccCc
Q psy5717 263 RDSVDCGR 270 (351)
Q Consensus 263 rdsvdcgr 270 (351)
+|.||||-
T Consensus 3 cdnvdcgp 10 (26)
T d1lr7a1 3 CENVDCGP 10 (26)
T ss_dssp STTCCCCT
T ss_pred ccccccCC
Confidence 47889984
No 7
>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.67 E-value=1.2e+02 Score=20.66 Aligned_cols=12 Identities=33% Similarity=0.908 Sum_probs=9.4
Q ss_pred eecCcccccCCC
Q psy5717 241 VECGHTLRTDQR 252 (351)
Q Consensus 241 vecghtlrtdqr 252 (351)
+.|||..|+|+-
T Consensus 55 ~~C~h~Wr~~~~ 66 (72)
T d1twfi2 55 LSCSHIFTSDQK 66 (72)
T ss_dssp TTTCCEEECCTT
T ss_pred CCCCCCcccccc
Confidence 578999988763
No 8
>d2b9da1 g.91.1.1 (A:42-93) E7 oncoprotein {Human papillomavirus type 1a [TaxId: 10583]}
Probab=7.82 E-value=16 Score=24.40 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=22.1
Q ss_pred eEEEEeecCcc-cccCCCCCcccccccccc
Q psy5717 236 AVRLSVECGHT-LRTDQRPSMDEVNLCCRD 264 (351)
Q Consensus 236 avrlsvecght-lrtdqrpsmdevnlccrd 264 (351)
.|||.|+|+|. +|+=|-==|+++++.|-.
T Consensus 17 ~vRL~V~at~~~IR~lqqLLlg~l~ivCP~ 46 (52)
T d2b9da1 17 LVRLTVLADHSAIRQLEEMLLRSLNIVCPL 46 (52)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHTCCCCCTT
T ss_pred EEEEEEEeChHHHHHHHHHhcCCccEECCc
Confidence 79999999985 566565667788888753
No 9
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.73 E-value=93 Score=20.08 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=17.4
Q ss_pred ccccccccceeeEEeecCCc
Q psy5717 164 RLKLFSPLRAVATVKISPNK 183 (351)
Q Consensus 164 RLklfsplravatvkispnk 183 (351)
=+.||+|.-.|..|+|.+++
T Consensus 26 L~~lF~~fG~I~~i~i~~~k 45 (89)
T d1x4da1 26 LLQLVEPFGVISNHLILNKI 45 (89)
T ss_dssp HHTTTGGGSCEEEEEECSSS
T ss_pred HHHHHHhhCCeEEEEeeccc
Confidence 35799999999999998876
No 10
>d1zj8a1 d.58.36.1 (A:327-406) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=7.63 E-value=1.1e+02 Score=19.58 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=25.3
Q ss_pred eeEEEEeecCccchhhhhhhhhhhhh-ccCCcceeeehhcc
Q psy5717 277 MAVRLSVECGHTLRTEWRAESIDQQI-KGNDTELKFTERQR 316 (351)
Q Consensus 277 mavrlsvecghtlrtewraesidqqi-kgndtelkfterqr 316 (351)
.+||+.+.+|..--..| ..|.+-. |-++.+++||-||.
T Consensus 16 ~~vri~~p~G~it~~ql--~~la~ia~~yg~g~i~lTtrq~ 54 (80)
T d1zj8a1 16 NAVGVAPIAGRVSGTIL--TAVADLMARAGSDRIRFTPYQK 54 (80)
T ss_dssp EEEEEBCBTTEEEHHHH--HHHHHHHHHHTCCCEEECTTSC
T ss_pred EEEEEeccCcEECHHHH--HHHHHHHHHhCCCeEEECCCCc
Confidence 57999999997533333 2333322 45578999999985
Done!