RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5717
(351 letters)
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 44.5 bits (105), Expect = 6e-05
Identities = 27/178 (15%), Positives = 49/178 (27%), Gaps = 13/178 (7%)
Query: 2 SERPMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSE 61
+ + + ++ E+ + E P ++ R RP +
Sbjct: 123 KPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKK 182
Query: 62 RPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSE--------- 112
P ++ E +R + + +P E + + E S
Sbjct: 183 PPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQS 242
Query: 113 ----RPSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSERPMSERPLKDRLK 166
R S + + M+ E R PS RP S RP R+K
Sbjct: 243 SEISRRSSSSLKKPDPSPSMASPETRESSKRTETRPRTSLRPPSARPASARPAPPRVK 300
Score = 41.4 bits (97), Expect = 5e-04
Identities = 26/162 (16%), Positives = 46/162 (28%), Gaps = 9/162 (5%)
Query: 2 SERPMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSER----PSERPMSE 57
E+ ++ + E +R +R RP + P ++ ++ +
Sbjct: 141 RPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAA 200
Query: 58 RPSERPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERP-----MSE 112
R + + E P E+ + E + E + R S S
Sbjct: 201 REAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLKKPDPSP 260
Query: 113 RPSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSER 154
+ E R PS RP S RP R +
Sbjct: 261 SMASPETRESSKRTETRPRTSLRPPSARPASARPAPPRVKRK 302
Score = 40.3 bits (94), Expect = 0.001
Identities = 26/158 (16%), Positives = 44/158 (27%), Gaps = 1/158 (0%)
Query: 2 SERPMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSER-PMSERPS 60
RP P ++ +R + R + + E P E+ + E +
Sbjct: 172 KSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTT 231
Query: 61 ERPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMS 120
+ R S PS + E R PS RP S
Sbjct: 232 SPMEEDESRQSSEISRRSSSSLKKPDPSPSMASPETRESSKRTETRPRTSLRPPSARPAS 291
Query: 121 ERPSERPMSERPMSERPSERPMSERPMSERPSERPMSE 158
RP+ + + + + + +S E SE
Sbjct: 292 ARPAPPRVKRKEIVTVLQDAQGVGKIVSNVILEGKKSE 329
Score = 37.6 bits (87), Expect = 0.008
Identities = 25/177 (14%), Positives = 52/177 (29%), Gaps = 2/177 (1%)
Query: 8 ERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPMSER 67
+ ++ P E + + ++ E+P E +P E +RP E+
Sbjct: 87 GPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEK 146
Query: 68 P-MSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMSERPSER 126
E+ E P +R R R ++ E +R + R + +
Sbjct: 147 EKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQ-AAREAVK 205
Query: 127 PMSERPMSERPSERPMSERPMSERPSERPMSERPLKDRLKLFSPLRAVATVKISPNK 183
E P E+ + E + + + ++ SP+
Sbjct: 206 GKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLKKPDPSPSM 262
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein;
Provisional.
Length = 617
Score = 40.2 bits (94), Expect = 0.001
Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 8/144 (5%)
Query: 23 PMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPMSERPMSERPSERPMSERP 82
P + P+ P + P RP E R +RP + P+ RP P
Sbjct: 90 PSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAY--P 147
Query: 83 MSERPSE-----RPSERLMSERPMSERPSERPMSERPSERPMSERPSERPMSERPMSERP 137
++ E R ++ ++ P P + S P ER E + RP ++
Sbjct: 148 AYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQR 207
Query: 138 SERPMSERPMSERPSERPMSERPL 161
RP +RP R ++RP
Sbjct: 208 RRDYDHPRPDWDRPR-RDRTDRPE 230
Score = 36.0 bits (83), Expect = 0.028
Identities = 40/179 (22%), Positives = 58/179 (32%), Gaps = 12/179 (6%)
Query: 5 PMSERPSDRPMSERPSERPMSERPSLRPSE-----RPMSERPSERPMSERPSERPMSERP 59
P + P+ P R + P RP RP E R P + P+ RP P
Sbjct: 90 PSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAY--P 147
Query: 60 SERPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPM 119
+ + E R ++ ++ P P S P ER E + RP
Sbjct: 148 AYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQR 207
Query: 120 SERPS-ERPMSERP---MSERPSERPMSERPMSERPSERPMSERPLKD-RLKLFSPLRA 173
RP +RP ++RP P + P + P+ R PL A
Sbjct: 208 RRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAPGPLAA 266
Score = 35.2 bits (81), Expect = 0.053
Identities = 36/176 (20%), Positives = 57/176 (32%), Gaps = 18/176 (10%)
Query: 1 MSERPMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPS-------------ERPMS 47
+ P RP RP R P L ++ + RP+ R
Sbjct: 104 RTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPEPGAWPRAAD 163
Query: 48 ERPSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSERPSERLMS-ERPMSERPS 106
+ ++ P P + P S P + E + RP R RP +RP
Sbjct: 164 DYGWQQQRLGFPPRAPYAS-PASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWDRPR 222
Query: 107 ERPMSERPSERPMSERPSE--RPMSERPMSERPSERPMSERPMSERPSERPMSERP 160
R ++RP P + ER + RP + P++ +P+ P P
Sbjct: 223 -RDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAPGPLAAQPAPAPGPGEP 277
>gnl|CDD|221188 pfam11725, AvrE, Pathogenicity factor. This family is secreted by
gram-negative Gammaproteobacteria such as Pseudomonas
syringae of tomato and the fire blight plant pathogen
Erwinia amylovora, amongst others. It is an essential
pathogenicity factor of approximately 198 kDa. Its
injection into the host-plant is dependent upon the
bacterial type III or Hrp secretion system. The family
is long and carries a number of predicted functional
regions, including an ERMS or endoplasmic reticulum
membrane retention signal at both the C- and the
N-termini, a leucine-zipper motif from residues 539-560,
and a nuclear localisation signal at 1358-1361. this
conserved AvrE-family of effectors is among the few that
are required for full virulence of many phytopathogenic
pseudomonads, erwinias and pantoeas.
Length = 1771
Score = 39.0 bits (91), Expect = 0.003
Identities = 30/188 (15%), Positives = 64/188 (34%), Gaps = 14/188 (7%)
Query: 10 PSDRPMSERPSERPMSERPSLR-----PSERPMSERPSERPMSERPSERPMSERPSERPM 64
P + + S P+LR P + ++ P P + R + R +
Sbjct: 72 PQALNPTAAAPQ--SSRGPTLRELLALPEDDGETQAPESSPSARRLTRSEGVARHEMEDL 129
Query: 65 SERPMSERPSERPMSERPMSERPSERP-----SERLMSERPMSERPSERPMSERPSERPM 119
+ RP+ + ++R + + +++ S R E S+ P + S + + +
Sbjct: 130 AGRPVVKPDADRQLRQDILNKSSSSRRPPVSKEEGTSSKMPATALASAALFKDDEIRQEV 189
Query: 120 SERPSERPMSERPMSERPSERPMSERPMSERPS-ERPMSERPLKDRLKLFSPLRAVATVK 178
S++ R R + + +P R R + L L+ + +
Sbjct: 190 DAARSDQASQSRLSRSRGNPPAIPPDAAPRQPMLTRSAGGRFEGEDENLERNLQPQSPIT 249
Query: 179 I-SPNKLD 185
+ KLD
Sbjct: 250 LDKKGKLD 257
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 38.9 bits (90), Expect = 0.004
Identities = 42/169 (24%), Positives = 65/169 (38%), Gaps = 14/169 (8%)
Query: 5 PMSERPSDRPMSERPSERPMSERPSLRPSERPMSER---PSERPMSERPSERPMSERPSE 61
P+ E SD+ E P S P P ++ E S+ + +P + E
Sbjct: 498 PIEEEDSDK-HDEPPEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGE 556
Query: 62 RPMSERPMSE-RPSERPM----SERPMSERPSERPSERLMSERPMS-ERPSERPMSERP- 114
P E +PS+ P E P + + P E +RP S +RP+ + P
Sbjct: 557 VGKKPGPAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPE 616
Query: 115 -SERPMSERPSERPMSER--PMSERPSERPMSERPMSERPSERPMSERP 160
+ P S + E P S + P +RPS E P + + P S +P
Sbjct: 617 LLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKP 665
Score = 36.6 bits (84), Expect = 0.021
Identities = 35/187 (18%), Positives = 66/187 (35%), Gaps = 21/187 (11%)
Query: 1 MSERPMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPS 60
+S++P + P ++P R + RP+ + P + + P + P
Sbjct: 575 LSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPK 634
Query: 61 ERPMSERPMSERPSERPMSER----PMSERPSERPS--ERLMSE-------------RPM 101
P +RP S E P + P S +P P E+ + +
Sbjct: 635 RPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVV 694
Query: 102 SERPSERPMSERPSERPMSERPSERPM-SERPMSERPSERPMSERPMSERPSERPMSERP 160
+ E + E E P + + RP+ + P E P+ + P +E+P + P
Sbjct: 695 LDESFESILKETLPETPGTPFTTPRPLPPKLPRDEEFPFEPIGD-PDAEQPDDIEFFTPP 753
Query: 161 LKDRLKL 167
++R
Sbjct: 754 EEERTFF 760
Score = 35.4 bits (81), Expect = 0.053
Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 9/111 (8%)
Query: 31 RPSERPMSERPSERPMSERPSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSER 90
+PS+ P + E P + + P + +RP S ++RP+ + P +
Sbjct: 568 KPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRS----AQRPTRPKSPKLPEL---LDI 620
Query: 91 PSERLMSERPMSERPSERPMSERPSERPMSERPSERPMSERPMSERPSERP 141
P E P S P P +RPS E P + P S +P P
Sbjct: 621 PKSPKRPESPKS--PKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPFDP 669
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 37.8 bits (88), Expect = 0.007
Identities = 28/160 (17%), Positives = 41/160 (25%), Gaps = 10/160 (6%)
Query: 1 MSERPMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSE----RPMSERPSERPMS 56
++ P S P+ + R R P+ R S+R S
Sbjct: 767 KLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRK-----S 821
Query: 57 ERPSERPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSE 116
+ SE RP P S + R + RP P
Sbjct: 822 RSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRA 881
Query: 117 RP-MSERPSERPMSERPMSERPSERPMSERPMSERPSERP 155
RP + P + + P RP + P P
Sbjct: 882 RPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPPGGP 921
Score = 37.8 bits (88), Expect = 0.010
Identities = 34/183 (18%), Positives = 38/183 (20%), Gaps = 26/183 (14%)
Query: 5 PMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPM 64
P +E P RP R PS RP S P PS P S P
Sbjct: 251 PENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPS 310
Query: 65 SERPMSER----------PSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERP 114
S R S S S R + P PS RP P
Sbjct: 311 SPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPR 370
Query: 115 SERPMSERPSERPMSERP-----------MSERPSERPMSERP-----MSERPSERPMSE 158
R S + R + P
Sbjct: 371 PSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARY 430
Query: 159 RPL 161
L
Sbjct: 431 PLL 433
Score = 37.1 bits (86), Expect = 0.014
Identities = 38/160 (23%), Positives = 44/160 (27%), Gaps = 2/160 (1%)
Query: 2 SERPMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERP-- 59
+ S S S P +E P RP+ + R E PS RP
Sbjct: 230 DDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSS 289
Query: 60 SERPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPM 119
S R S P P P P + S E S S S
Sbjct: 290 SPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSR 349
Query: 120 SERPSERPMSERPMSERPSERPMSERPMSERPSERPMSER 159
S PS P P S R RP + RP R
Sbjct: 350 SPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRR 389
Score = 34.4 bits (79), Expect = 0.10
Identities = 29/156 (18%), Positives = 43/156 (27%), Gaps = 1/156 (0%)
Query: 1 MSERPMSERPSDRPMSERPSE-RPMSERPSLRPSERPMSERPSERPMSERPSERPMSERP 59
+E P +E S S + S P + P P P P +
Sbjct: 76 GTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLS 135
Query: 60 SERPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPM 119
P + P + + S+ S R + S + R S P+E P
Sbjct: 136 EMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPP 195
Query: 120 SERPSERPMSERPMSERPSERPMSERPMSERPSERP 155
S P+ S S S P R +
Sbjct: 196 STPPAAASPRPPRRSSPISASASSPAPAPGRSAADD 231
Score = 34.4 bits (79), Expect = 0.11
Identities = 24/162 (14%), Positives = 37/162 (22%), Gaps = 3/162 (1%)
Query: 13 RPMSERPS--ERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPMSERPMS 70
S P+ ++ P S P + R R P+ + R S
Sbjct: 759 SNPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAA-DAASRTAS 817
Query: 71 ERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMSERPSERPMSE 130
+R S + RP P S + R + RP
Sbjct: 818 KRKSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPP 877
Query: 131 RPMSERPSERPMSERPMSERPSERPMSERPLKDRLKLFSPLR 172
P + + P + RP P
Sbjct: 878 EPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPPG 919
Score = 33.6 bits (77), Expect = 0.20
Identities = 25/170 (14%), Positives = 40/170 (23%), Gaps = 12/170 (7%)
Query: 2 SERPMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPS-ERPMSERPSERPMSERPS 60
E P P + R + + S P P P + P+
Sbjct: 65 FEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPA 124
Query: 61 ERPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSER---------PMS 111
P P + P + P+ S+ S R +
Sbjct: 125 SPP--PSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEET 182
Query: 112 ERPSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSERPMSERPL 161
R P +E P P + P+S S P+ +
Sbjct: 183 ARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDA 232
Score = 32.8 bits (75), Expect = 0.35
Identities = 24/124 (19%), Positives = 29/124 (23%), Gaps = 10/124 (8%)
Query: 2 SERPMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSE 61
S E S S S R + P PS P RP P +RP R
Sbjct: 317 SSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPS 376
Query: 62 RPMSERPMSERPSERPM--SERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPM 119
P + R R + P+ R RPS
Sbjct: 377 SPAASAGRPTRRRARAAVAGRARRRDATGRFPAGR--------PRPSPLDAGAASGAFYA 428
Query: 120 SERP 123
Sbjct: 429 RYPL 432
Score = 32.5 bits (74), Expect = 0.43
Identities = 29/148 (19%), Positives = 36/148 (24%), Gaps = 9/148 (6%)
Query: 14 PMSERPSERPMSERPSLRPSERPMSERPSERPMSE-----RPSERPMSERPSERPMSERP 68
E + P S PS P + P S S P R +
Sbjct: 177 SSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASS 236
Query: 69 MSERPSERPMS-ERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMSERPSERP 127
SE P +E P RP+ P + P S S R
Sbjct: 237 SDSSSSESSGCGWGPENECPLPRPA---PITLPTRIWEASGWNGPSSRPGPASSSSSPRE 293
Query: 128 MSERPMSERPSERPMSERPMSERPSERP 155
S P P P P + S
Sbjct: 294 RSPSPSPSSPGSGPAPSSPRASSSSSSS 321
Score = 32.5 bits (74), Expect = 0.44
Identities = 16/93 (17%), Positives = 22/93 (23%), Gaps = 3/93 (3%)
Query: 2 SERPMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSE 61
RP P S + R + RP RP + +
Sbjct: 835 PARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAA 894
Query: 62 RPMSERPMSERPSERPMSERPMSERPSERPSER 94
P + P RP + P P R
Sbjct: 895 AP---PAGAPAPRPRPAPRVKLGPMPPGGPDPR 924
Score = 31.7 bits (72), Expect = 0.62
Identities = 25/161 (15%), Positives = 32/161 (19%), Gaps = 7/161 (4%)
Query: 4 RPMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERP 63
P P P P S S S S R + P S PS
Sbjct: 297 SPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPG-PSPSRSPSPSR 355
Query: 64 MSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMSERP 123
P +RP R S + R + + P
Sbjct: 356 PPPPADPSSPRKRPRPSRAPSSPAASAGRPT--RRRARAAVAGRARRRDATGRFPAGRPR 413
Query: 124 SERPMSERPMSERPSERPMSERPMSERPSERPMSERPLKDR 164
S ++ P S P R
Sbjct: 414 P----SPLDAGAASGAFYARYPLLTPSGEPWPGSPPPPPGR 450
Score = 31.7 bits (72), Expect = 0.67
Identities = 32/158 (20%), Positives = 37/158 (23%), Gaps = 3/158 (1%)
Query: 4 RPMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERP 63
P R S + S P R + + S S S P +E P RP
Sbjct: 203 SPRPPRRSSPISASASSPAPAPGRSAADDAGA--SSSDSSSSESSGCGWGPENECPLPRP 260
Query: 64 -MSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMSER 122
P + S S R S P P P P S
Sbjct: 261 APITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSS 320
Query: 123 PSERPMSERPMSERPSERPMSERPMSERPSERPMSERP 160
E S S S S S P P
Sbjct: 321 SRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPP 358
Score = 31.7 bits (72), Expect = 0.70
Identities = 31/151 (20%), Positives = 44/151 (29%), Gaps = 5/151 (3%)
Query: 5 PMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPM 64
E P+ P R + S ++ R S P P P P
Sbjct: 63 DRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTP---PGPSSPDPPPP 119
Query: 65 SERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMSERPS 124
+ P S P P + RP P + P + S+ S R + S
Sbjct: 120 TPPPAS--PPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLS 177
Query: 125 ERPMSERPMSERPSERPMSERPMSERPSERP 155
+ R S P+E P S P + P
Sbjct: 178 SPEETARAPSSPPAEPPPSTPPAAASPRPPR 208
Score = 30.5 bits (69), Expect = 1.5
Identities = 26/161 (16%), Positives = 37/161 (22%), Gaps = 14/161 (8%)
Query: 3 ERPMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSER 62
+ S P + P P P P + P P + P+
Sbjct: 97 PASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAA- 155
Query: 63 PMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMSER 122
S + + P P E + R S P+E P S P+
Sbjct: 156 -----GASPAAVASDAASSRQAALPLSSPEE---TARAPSSPPAEPPPSTPPAAASPRPP 207
Query: 123 PSERP-----MSERPMSERPSERPMSERPMSERPSERPMSE 158
P S P R + SE
Sbjct: 208 RRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCG 248
Score = 30.1 bits (68), Expect = 2.4
Identities = 28/163 (17%), Positives = 41/163 (25%), Gaps = 13/163 (7%)
Query: 1 MSERPMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPS 60
R S P + P P P P + P P + P+
Sbjct: 99 SPAREGSPTPPGPS----SPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPA 154
Query: 61 ERPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMS 120
S + + P P E + R S P+E P S P+
Sbjct: 155 A------GASPAAVASDAASSRQAALPLSSPEE---TARAPSSPPAEPPPSTPPAAASPR 205
Query: 121 ERPSERPMSERPMSERPSERPMSERPMSERPSERPMSERPLKD 163
P+S S P+ + S+ SE
Sbjct: 206 PPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCG 248
Score = 29.8 bits (67), Expect = 3.0
Identities = 29/163 (17%), Positives = 35/163 (21%), Gaps = 14/163 (8%)
Query: 4 RPMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSER-----PMSERPSERPMSER 58
S RP + P+ P + + S P +E
Sbjct: 196 STPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENEC 255
Query: 59 PSERP-MSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSER 117
P RP P + S S R S P P P P
Sbjct: 256 PLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRAS 315
Query: 118 PMSERPSERPMSERPMSERPSERPMSERPMSERPSERPMSERP 160
S E S S SE S P R
Sbjct: 316 SSSSSSRE--------SSSSSTSSSSESSRGAAVSPGPSPSRS 350
Score = 29.4 bits (66), Expect = 3.2
Identities = 28/175 (16%), Positives = 39/175 (22%), Gaps = 18/175 (10%)
Query: 3 ERPMSERPSDRPM--SERPSERPMSERPSLRPSERPMSERPSERPM--------SERPSE 52
P + S P P+ S + + R
Sbjct: 128 PSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPS 187
Query: 53 RPMSERPSERPMSERPMSERPSERPMSERPMSERPS-------ERPSERLMSERPMSERP 105
P +E P P + P+S S P+ + + S S
Sbjct: 188 SPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGC 247
Query: 106 SERPMSERPSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSERPMSERP 160
P +E P RP R PS RP S P
Sbjct: 248 GWGPENECPLPRPAPITLPTRIWEASG-WNGPSSRPGPASSSSSPRERSPSPSPS 301
>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72
family. Members of this protein family occur in
Mycoplasma mycoides, Mycoplasma hyopneumoniae, and
related Mycoplasmas in small paralogous families that
may also include truncated forms and/or pseudogenes.
Members are predicted lipoproteins with a conserved
signal peptidase II processing and lipid attachment
site. Note that the name for certain characterized
members, p72, reflects an anomalous apparent molecular
weight, given a theoretical MW of about 61 kDa.
Length = 541
Score = 37.1 bits (86), Expect = 0.013
Identities = 16/81 (19%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 85 ERPSERPSERL--MSERPMSERPSERPMSERPSERPMSERPSERPMSERPMSERPSERPM 142
++P +P+E + ++P ++ PSE ++ +E E PS ++P + E
Sbjct: 36 KKPEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKKPDPSKNKEEIE 95
Query: 143 SERPMSERPSERPMSERPLKD 163
+ ++P ++P +++P
Sbjct: 96 KPKDEPKKPDKKPQADQPNNV 116
Score = 34.8 bits (80), Expect = 0.068
Identities = 15/87 (17%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 71 ERPSERPMSERPMS--ERPSERPSERLMSERPMSERPSERPMSERPSERPMSERPSERPM 128
++P +P P + ++ PSE ++ + E P S P ++P + E
Sbjct: 36 KKPEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKKPDPSKNKEEIE 95
Query: 129 SERPMSERPSERPMSERPMSERPSERP 155
+ ++P ++P +++P + +
Sbjct: 96 KPKDEPKKPDKKPQADQPNNVHADQPN 122
Score = 34.8 bits (80), Expect = 0.070
Identities = 18/98 (18%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 28 PSLRPSERPMSERPSER-PM-SERPSERPMSERPSERPMSERPMSERPSERPMSERPMSE 85
+ + E+ +P+E P ++P + SE + + +E E PS ++P
Sbjct: 29 SNSKQPEKKPEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKKP--- 85
Query: 86 RPSERPSERLMSERPMSERPSERPMSERPSERPMSERP 123
PS+ E + ++P ++P +++P+ +
Sbjct: 86 DPSKNKEEIEKPKDE-PKKPDKKPQADQPNNVHADQPN 122
Score = 34.4 bits (79), Expect = 0.075
Identities = 16/87 (18%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 8 ERPSDRPMSERP--SERPMSERPSLRPSERPMSERPSE-RPMSERPSERPMSERPSERPM 64
++P +P P ++P ++ PS + + +E E P S P ++P + E
Sbjct: 36 KKPEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKKPDPSKNKEEIE 95
Query: 65 SERPMSERPSERPMSERPMSERPSERP 91
+ ++P ++P +++P + +
Sbjct: 96 KPKDEPKKPDKKPQADQPNNVHADQPN 122
Score = 29.4 bits (66), Expect = 2.8
Identities = 13/76 (17%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 2 SERPMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSE 61
++P ++ PS+ ++ +E E PS E+ PS+ + ++P +
Sbjct: 50 PKKPDNKEPSENNNNKSNNENKDEENPSSTNPEK--KPDPSKNKEEIEKPKDE-PKKPDK 106
Query: 62 RPMSERPMSERPSERP 77
+P +++P + +
Sbjct: 107 KPQADQPNNVHADQPN 122
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 36.8 bits (85), Expect = 0.017
Identities = 30/152 (19%), Positives = 44/152 (28%), Gaps = 4/152 (2%)
Query: 5 PMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPM 64
P + + P + P+ P P S +P+ P P + S P
Sbjct: 2801 PWDPADPPAAVLAPAAALPPAASPA-GPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPG 2859
Query: 65 SERPMSERPSERPMSERP-MSERPSERPSERLMSERPMSERPSERPMSERPSERPMSERP 123
+ RP R + +P RP R R R ERP + P
Sbjct: 2860 G--DVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPP 2917
Query: 124 SERPMSERPMSERPSERPMSERPMSERPSERP 155
+P P +P P P+ P
Sbjct: 2918 QPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDP 2949
Score = 35.7 bits (82), Expect = 0.044
Identities = 31/123 (25%), Positives = 45/123 (36%), Gaps = 7/123 (5%)
Query: 5 PMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPM 64
P P+ + RP P S RP P+ +R R + P + P P
Sbjct: 2575 PRPSEPAVTSRARRPDAPPQSARPRA-----PVDDRGDPRGPAPPSPLPPDTHAPDPPPP 2629
Query: 65 SERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMSERPS 124
S P + P P P ERP + P+ +S + R + P +RP R +
Sbjct: 2630 SPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRP--RRRA 2687
Query: 125 ERP 127
RP
Sbjct: 2688 ARP 2690
Score = 33.4 bits (76), Expect = 0.20
Identities = 27/159 (16%), Positives = 39/159 (24%), Gaps = 6/159 (3%)
Query: 5 PMSERPSDRPMSERPSERPMSERPSLRP---SERPMSERPSERPMSERPSERPMSERPSE 61
RP+ +SE P P+ P + P+ P P
Sbjct: 2781 RRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPP 2840
Query: 62 RPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMSE 121
P P S + RP R + RP R ++ R
Sbjct: 2841 PPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPA---RPPVRRLARPAVSRSTES 2897
Query: 122 RPSERPMSERPMSERPSERPMSERPMSERPSERPMSERP 160
ERP + P + P +P P
Sbjct: 2898 FALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPP 2936
Score = 33.0 bits (75), Expect = 0.30
Identities = 30/168 (17%), Positives = 43/168 (25%), Gaps = 19/168 (11%)
Query: 5 PMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSE-RPSERP 63
P S +P+ P P + S+ P + RP R + +P+ R RP
Sbjct: 2831 PTSAQPTAPPPPPGPPPPSLPLGGSVAPGG-DVRRRPPSRSPAAKPAAPARPPVRRLARP 2889
Query: 64 MSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMSERP 123
R ERP + P + P +P P + P
Sbjct: 2890 AVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDP 2949
Query: 124 SERPMS-----------------ERPMSERPSERPMSERPMSERPSER 154
+ P P P E P S P
Sbjct: 2950 AGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLT 2997
Score = 32.2 bits (73), Expect = 0.47
Identities = 28/157 (17%), Positives = 42/157 (26%), Gaps = 4/157 (2%)
Query: 5 PMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPM 64
P + P P + P SL S + + P+ P
Sbjct: 2766 PPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPA 2825
Query: 65 SERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMSERPS 124
P P PS + + RP R + +P+ RP
Sbjct: 2826 GPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPA---RPP 2882
Query: 125 ERPMSERPMSERPSERPMSERPMSERPSERPMSERPL 161
R ++ RP R +E ERP + P
Sbjct: 2883 VRRLA-RPAVSRSTESFALPPDQPERPPQPQAPPPPQ 2918
Score = 31.1 bits (70), Expect = 1.2
Identities = 36/141 (25%), Positives = 50/141 (35%), Gaps = 6/141 (4%)
Query: 19 PSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPMSERPMSERPSERPM 78
P P P RP+ RP P+ + RP P S RP R + R P
Sbjct: 2560 PPAAPDRSVPPPRPAPRPSE--PAVTSRARRPDAPPQSARP--RAPVDDRGDPRGPAPPS 2615
Query: 79 SERPMSERPS-ERPSERLMSERPMSERPSERPMSERPSERPMSERPSERPMSERP-MSER 136
P + P PS + P P P ERP + P R S + R + +
Sbjct: 2616 PLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQ 2675
Query: 137 PSERPMSERPMSERPSERPMS 157
S P R + RP+ ++
Sbjct: 2676 ASSPPQRPRRRAARPTVGSLT 2696
Score = 30.7 bits (69), Expect = 1.6
Identities = 35/162 (21%), Positives = 52/162 (32%), Gaps = 11/162 (6%)
Query: 9 RPSDRPMSERPSERPMSERPSLRPSERPMSERPSE-RPMSERPSERPMSERPSERPMSER 67
RP P S RP P+ +R R P P P PS P + P P
Sbjct: 2588 RPDAPPQSARP-RAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTV 2646
Query: 68 PMSERPSERP------MSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMSE 121
P ERP + P R + + S R + RP+ ++ P
Sbjct: 2647 PPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPP 2706
Query: 122 RPSERP---MSERPMSERPSERPMSERPMSERPSERPMSERP 160
P P +S P+ P+ + + P+ + P
Sbjct: 2707 TPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGP 2748
Score = 30.3 bits (68), Expect = 2.2
Identities = 30/158 (18%), Positives = 47/158 (29%), Gaps = 6/158 (3%)
Query: 2 SERPMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSE 61
P P + + P PS +E P P ERP + P R S
Sbjct: 2605 RGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHP-PPTVPPPERPRDDPAPGRVSR 2663
Query: 62 RPMSERP-MSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMS 120
+ R + + S P R + RP+ L P P P + + P+
Sbjct: 2664 PRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSAT-PLP 2722
Query: 121 ERPSERPMSERPMSERPSERPMSE---RPMSERPSERP 155
P+ + + P+ + P RP
Sbjct: 2723 PGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARP 2760
Score = 28.0 bits (62), Expect = 9.7
Identities = 23/149 (15%), Positives = 36/149 (24%), Gaps = 10/149 (6%)
Query: 2 SERPMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSE 61
RP R + +S + RP + P +P P + P
Sbjct: 2878 PARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPP 2937
Query: 62 RPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSER--PSERPMSERPSERPM 119
RP + P+ P P + + P P E P+
Sbjct: 2938 RPQPPLAPTTDPAGAG---EPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTP 2994
Query: 120 SERPSERP-----MSERPMSERPSERPMS 143
S + E P+S
Sbjct: 2995 PLTGHSLSRVSSWASSLALHEETDPPPVS 3023
>gnl|CDD|223068 PHA03384, PHA03384, early DNA-binding protein E2A; Provisional.
Length = 445
Score = 35.1 bits (81), Expect = 0.051
Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 7/103 (6%)
Query: 1 MSERPMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPS 60
M R S + P E P L P ++ E ++ S
Sbjct: 1 MRGRGSSSDSPY-----SSDDSPSLEPPELPPKKKGRRRVSPVEEEEEEEEAEVVAVGFS 55
Query: 61 ERPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSE 103
P+ R + +RP+ + ++ S P+S+
Sbjct: 56 YPPV--RISRGKDGKRPVRPLKEEKDSEKKASTEAAVRNPLSD 96
Score = 34.3 bits (79), Expect = 0.079
Identities = 15/104 (14%), Positives = 25/104 (24%), Gaps = 8/104 (7%)
Query: 64 MSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMSERP 123
M R S + ++ E ++
Sbjct: 1 MRGRGSSSDSPYSSDDSPSLEPPELPPK------KKGRRRVSPVEEEEEEEEAEVVAVGF 54
Query: 124 SERPM--SERPMSERPSERPMSERPMSERPSERPMSERPLKDRL 165
S P+ S +RP E+ ++ S PL D L
Sbjct: 55 SYPPVRISRGKDGKRPVRPLKEEKDSEKKASTEAAVRNPLSDPL 98
>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI. This minor capsid
protein may act as a link between the external capsid
and the internal DNA-protein core. The C-terminal 11
residues may function as a protease cofactor leading to
enzyme activation.
Length = 238
Score = 33.6 bits (77), Expect = 0.12
Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 4/91 (4%)
Query: 5 PMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPM 64
+ +P RP E E PS + +P P E P+ P + P +
Sbjct: 126 IQALQPRPRPDVEEVLVPAAPEPPSYEETIKPGP-APVEEPVDSMAIAVPAIDTPVTLEL 184
Query: 65 SERPMSERPSER-PMSERPMSERPSERPSER 94
P + P P + R S R
Sbjct: 185 --PPAPQPPPPVVPQPSTMVVHRRSRIKRTR 213
Score = 32.5 bits (74), Expect = 0.26
Identities = 21/111 (18%), Positives = 31/111 (27%), Gaps = 7/111 (6%)
Query: 50 PSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERP 109
E P P E +++ + +P RP E + E PS P E P
Sbjct: 111 GEEEPA---PQEETVADPIQALQPRPRPDVEEVLVPAAPEPPS--YEETIKPGPAPVEEP 165
Query: 110 MSERPSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSERPMSERP 160
+ P + P + P + P M R R
Sbjct: 166 VDSMAIAVPAIDTPVTLEL--PPAPQPPPPVVPQPSTMVVHRRSRIKRTRS 214
>gnl|CDD|165564 PHA03309, PHA03309, transcriptional regulator ICP4; Provisional.
Length = 2033
Score = 33.7 bits (76), Expect = 0.17
Identities = 24/69 (34%), Positives = 32/69 (46%)
Query: 6 MSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPMS 65
+++R +DR S + +RP +RP S S S S R RP S R R MS
Sbjct: 1543 LADRHADRRRSTKGPQRPGGKRPRSSSSSSSASHDRSPSSSSRRRDGRPSSRRRPSRRMS 1602
Query: 66 ERPMSERPS 74
RP S P+
Sbjct: 1603 ARPPSRPPA 1611
Score = 31.4 bits (70), Expect = 0.85
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 41 PSERPMSERPSERPMSERPSERPMSERPMSERPSERPMSER---PMSERPSERPSERLMS 97
P +++R ++R S + +RP +RP S S +R S R RPS R
Sbjct: 1538 PPGPELADRHADRRRSTKGPQRPGGKRPRSSSSSSSASHDRSPSSSSRRRDGRPSSRRRP 1597
Query: 98 ERPMSERPSERP 109
R MS RP RP
Sbjct: 1598 SRRMSARPPSRP 1609
Score = 30.2 bits (67), Expect = 2.0
Identities = 22/62 (35%), Positives = 26/62 (41%)
Query: 2 SERPMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSE 61
++R S + RP +RP S S S S R RP S R R MS RP
Sbjct: 1548 ADRRRSTKGPQRPGGKRPRSSSSSSSASHDRSPSSSSRRRDGRPSSRRRPSRRMSARPPS 1607
Query: 62 RP 63
RP
Sbjct: 1608 RP 1609
Score = 29.8 bits (66), Expect = 3.0
Identities = 33/108 (30%), Positives = 42/108 (38%), Gaps = 6/108 (5%)
Query: 60 SERPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPM 119
S S S PS RP S PS P R +R S R ER +RPS P
Sbjct: 1818 SSSSSSSSSSSSSPSSRPSRSATPSLSPSPSPPRRAPVDRSRSGRRRER---DRPSANPF 1874
Query: 120 SERPSERPMSER-PMSERPSERPMS--ERPMSERPSERPMSERPLKDR 164
P +R ++ P P + P++ + P RP P S L R
Sbjct: 1875 RWAPRQRSRADHSPDGTAPGDAPLNLEDGPGRGRPIWTPSSATTLPSR 1922
Score = 29.1 bits (64), Expect = 5.3
Identities = 48/172 (27%), Positives = 61/172 (35%), Gaps = 19/172 (11%)
Query: 7 SERPSDRPMSERPSERP-MSERPSLRPSERPMSERPSERPMS------ERPSERPMSERP 59
S S S PS RP S PSL PS P P +R S +RPS P P
Sbjct: 1819 SSSSSSSSSSSSPSSRPSRSATPSLSPSPSPPRRAPVDRSRSGRRRERDRPSANPFRWAP 1878
Query: 60 SERPMSER-PMSERPSERPMS--ERPMSERPSERPSERLMSERPMSERPSERPMSERPSE 116
+R ++ P P + P++ + P RP PS S S
Sbjct: 1879 RQRSRADHSPDGTAPGDAPLNLEDGPGRGRPIWTPSSATTLPSRSGPEDSVDETETEDSA 1938
Query: 117 RPMSERPSERPMSERPMSERPSERPMSERP--------MSERPSERPMSERP 160
P PS S SE SE P P + R + RP S++P
Sbjct: 1939 PPARLAPSPLETSRAEDSE-DSEYPEYSNPRLGKSPPALKSREARRPSSKQP 1989
>gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed.
Length = 413
Score = 33.3 bits (76), Expect = 0.20
Identities = 24/136 (17%), Positives = 56/136 (41%), Gaps = 20/136 (14%)
Query: 17 ERPSERPMSERPSLRPSERPMSE-RPSERPMSERPSERPMSERPSERPMSERPMSERPSE 75
P+ + P+ P+ PM+ R + + ER +P + +++P++
Sbjct: 279 AAPAATAAAAAPAEEPAVAPMAAIRAAHVETAADKGERA------AKPAAADKAADKPAD 332
Query: 76 RPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMSERPSERPMSERPMSE 135
RP + +E+ +E+P+E + R +++P + + P S + S +
Sbjct: 333 RPDA----AEKAAEKPAEA-------APRAADKPAGQ--AADPASSSADKPGASADAAAR 379
Query: 136 RPSERPMSERPMSERP 151
P+ + P ++ P
Sbjct: 380 TPARARDAAAPDADTP 395
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 32.9 bits (75), Expect = 0.24
Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 14 PMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPMSERPMSERP 73
P + PS + PS RP + P + P+ E + P+ RP P+ P S
Sbjct: 371 PTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPK 430
Query: 74 SER---PMSERPMSERPSERPSERLMSERPMS 102
R P+ E+P P+ E
Sbjct: 431 LTRAAIPVDEKPKYTPPAPPKEEEKALIADGD 462
Score = 28.2 bits (63), Expect = 8.4
Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 12/112 (10%)
Query: 63 PMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMSER 122
P + P RP+ P S RP + + + P+ E + P+ RP P+
Sbjct: 371 PTAAAPSPVRPTPAP------STRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHT 424
Query: 123 PSERPMSERPMSERPSERPMSERPMSERPSERPMSERPLKDRLKLFSPLRAV 174
P P R + P+ E+P P+ E+ L + L A+
Sbjct: 425 PESAPKLTR------AAIPVDEKPKYTPPAPPKEEEKALIADGDVLEQLEAI 470
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 33.0 bits (76), Expect = 0.26
Identities = 20/172 (11%), Positives = 39/172 (22%), Gaps = 17/172 (9%)
Query: 2 SERPMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSE 61
+ E + S P + P+
Sbjct: 636 PAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAG 695
Query: 62 RPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSER----------PSERPMS 111
+ +P+ P + P + + + ++ + + S P E
Sbjct: 696 AAPA------QPAPAPAA-TPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDP 748
Query: 112 ERPSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSERPMSERPLKD 163
P+ P P P + P P SE M + +D
Sbjct: 749 PDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRD 800
>gnl|CDD|112890 pfam04094, DUF390, Protein of unknown function (DUF390). This is a
family of long proteins currently only found in the rice
genome. They have no known function. However they may be
some kind of transposable element.
Length = 843
Score = 32.9 bits (74), Expect = 0.28
Identities = 35/157 (22%), Positives = 48/157 (30%), Gaps = 4/157 (2%)
Query: 11 SDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPMSERPMS 70
RP R + P P S RP P+ +P ER +R M
Sbjct: 97 GSRPADARGKRKQEGTPPPSPPRGGGAVRASSRRPEGAAPTSQPEGERKKKR---FCKMG 153
Query: 71 ERPSERPMSERPMSERPSERPS-ERLMSERPMSERPSERPMSERPSERPMSERPSERPMS 129
E R R ++ P+ L S RP S R + P +
Sbjct: 154 EPEHAGGNLIRLPGGRFADLPAGSSLRSPRPYSFSHLPRRVFTHPFLFVFWFFFCLSEIP 213
Query: 130 ERPMSERPSERPMSERPMSERPSERPMSERPLKDRLK 166
RP S + +E P + R R DRL+
Sbjct: 214 SRPSRHSKSGQSEAEDPAAAEARRREADRREAADRLR 250
>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau;
Validated.
Length = 709
Score = 32.8 bits (74), Expect = 0.30
Identities = 26/142 (18%), Positives = 57/142 (40%), Gaps = 6/142 (4%)
Query: 3 ERPMSERPSDRPMSERPSERPMSE---RPSLRPSERPMSERPSERPMSERPSERPMSERP 59
+ P ++ +++P RP +E P S M PSE + S + ++ P
Sbjct: 378 QSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAM---PSEGKTAGPVSNQENNDVP 434
Query: 60 SERPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPM 119
+ + + + ++ + +E P E +S+ ++ ++ P+SE PSE P+
Sbjct: 435 PWEDAPDEAQTAAGTAQTSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPI 494
Query: 120 SERPSERPMSERPMSERPSERP 141
P++ + + P
Sbjct: 495 QATPNDEAVETETFAHEAPAEP 516
Score = 30.1 bits (67), Expect = 1.9
Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 8/125 (6%)
Query: 25 SERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPMSERPMSERPSERPMSERPMS 84
+E+ + +P E + + + S M + E P + P
Sbjct: 385 AEKETAAKKPQPRPEAETAQTPVQTASAAAMP--SEGKTAGPVSNQENNDVPPWEDAP-- 440
Query: 85 ERPSERPSERLMSERPMSERPSERPMSERPSERPMSERPSERPMSERPMSERPSERPMSE 144
++ + + + SE +E P E +S+ + ++ P+SE PSE P+
Sbjct: 441 -DEAQTAAGTAQTSAKSIQTASE---AETPPENQVSKNKAADNETDAPLSEVPSENPIQA 496
Query: 145 RPMSE 149
P E
Sbjct: 497 TPNDE 501
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 32.8 bits (75), Expect = 0.33
Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 14/138 (10%)
Query: 35 RPMSERPSERPMSERPSERPMSERPSERPMSERPMSERPSERPMSE-RPMSERPSERPSE 93
+P + + P ++ RP + P+ P+++ + P+ P + + P+ P
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPA 424
Query: 94 RLMSERPMSERPSERPMSER---PSERPMSERPSERPMSE---RPMSERPSERPMSERPM 147
P++ + P + P+ ++ P + E P+ P S P
Sbjct: 425 ------PVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPA 478
Query: 148 SE-RPSERPMSERPLKDR 164
P+ ++ D
Sbjct: 479 PAAAPAAARLTPTEEGDV 496
Score = 30.8 bits (70), Expect = 1.3
Identities = 13/140 (9%), Positives = 37/140 (26%), Gaps = 17/140 (12%)
Query: 13 RPMSERPSERPMSERPSLRPS-ERPMSERPSERPMSERPSERPMSERPSERPMSERPMSE 71
+P + + P ++ RP P + ++ + P+ P + +
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPA 424
Query: 72 RPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMSERPSERPMSER 131
+ P + + P+ ++ P + E +
Sbjct: 425 PVAAPAA-AAPAAAPAAA---------------PAAVALAPAPPAQAAPETVAIPVRVAP 468
Query: 132 PMSERPSERPMSERPMSERP 151
+ + + P + R
Sbjct: 469 EPAVASAAPAPAAAPAAARL 488
Score = 30.1 bits (68), Expect = 2.2
Identities = 11/113 (9%), Positives = 32/113 (28%), Gaps = 3/113 (2%)
Query: 4 RPMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERP 63
RP + P+ P+++ + + P + P + + +
Sbjct: 383 RPEAAAPAAAPVAQAAAAPAPAAAP---AAAASAPAAPPAAAPPAPVAAPAAAAPAAAPA 439
Query: 64 MSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSE 116
+ ++ P+ + P E ++ + + P+E
Sbjct: 440 AAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 32.7 bits (74), Expect = 0.36
Identities = 31/168 (18%), Positives = 67/168 (39%), Gaps = 17/168 (10%)
Query: 17 ERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPMSERPMSERPSER 76
++P P +E+P+ +P P E+P+++P E+P++ + + + + + +
Sbjct: 404 QQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQ 463
Query: 77 PMSE--RPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMS--ERPSERPMSERP 132
+P ++ P + + + E+ P +P+ P+ E E+ ER
Sbjct: 464 TEQTYQQPAAQEPLYQQPQPV--EQQPVVEPEPVVEETKPARPPLYYFEEVEEKRARERE 521
Query: 133 MSE---RPSERPMSERPMSERPSERPMSERPLKDRLKLFSPLRAVATV 177
+P P+ E P + S + S + P+ A A V
Sbjct: 522 QLAAWYQPIPEPVKE-PEPIKSSLKAPSVAAV-------PPVEAAAAV 561
Score = 29.3 bits (65), Expect = 4.0
Identities = 24/132 (18%), Positives = 69/132 (52%), Gaps = 10/132 (7%)
Query: 1 MSERPMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPS 60
+ + + + ++P ++P++ +P + ++P++ +P + + + +P ++P
Sbjct: 750 EPVQQPQQPVAPQQQYQQP-QQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQP- 807
Query: 61 ERPMSERPMSERPSERPMSERPMSERP----SERPSERLMSERPM---SERPSERPMSER 113
++P++ +P ++P ++P++ +P ++P + +P + L+ M RP +P +
Sbjct: 808 QQPVAPQPQYQQP-QQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPL 866
Query: 114 PSERPMSERPSE 125
PS ++ PSE
Sbjct: 867 PSLDLLTPPPSE 878
>gnl|CDD|221734 pfam12722, Hid1, High-temperature-induced dauer-formation protein.
Hid1 (high-temperature-induced dauer-formation protein
1) represents proteins of approximately 800 residues
long and is conserved from fungi to humans. It contains
up to seven potential transmembrane domains separated by
regions of low complexity. Functionally it might be
involved in vesicle secretion or be an inter-cellular
signalling protein or be a novel insulin receptor.
Length = 813
Score = 32.3 bits (74), Expect = 0.37
Identities = 20/131 (15%), Positives = 38/131 (29%)
Query: 47 SERPSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPS 106
ER ++ S SE P + ++ P+ R S + PS
Sbjct: 583 DERSNQSASGSLSDNPSNDNDSRSPSLSEVPEENKSLAITDDFDPASRENSTSEAAAPPS 642
Query: 107 ERPMSERPSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSERPMSERPLKDRLK 166
+ + +R S + RP +S + E+ + K
Sbjct: 643 VNSVPLQLQGPSEKDRGKNPAGSLAFSRLNSATRPKWPSGLSSKSKEKFPPTSDWVESWK 702
Query: 167 LFSPLRAVATV 177
PL+ + +
Sbjct: 703 GKLPLQTILRL 713
Score = 28.5 bits (64), Expect = 7.0
Identities = 16/107 (14%), Positives = 26/107 (24%), Gaps = 5/107 (4%)
Query: 38 SERPSERPMSERPSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSERPSERLMS 97
ER ++ +SE P + P S S + S
Sbjct: 583 DERSNQSASGSLSDNPSNDNDSRSPSLSEVPEENKSLAITDDFDPASRENSTSEAAAPPS 642
Query: 98 ERPMSERPSERPMSERPSERPMSERPSE-----RPMSERPMSERPSE 139
+ + +R S S RP +S + E
Sbjct: 643 VNSVPLQLQGPSEKDRGKNPAGSLAFSRLNSATRPKWPSGLSSKSKE 689
>gnl|CDD|223066 PHA03379, PHA03379, EBNA-3A; Provisional.
Length = 935
Score = 32.0 bits (72), Expect = 0.52
Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 15/166 (9%)
Query: 3 ERPMSERPSDRPMSERPSERPMSERPSLRPS---ERPMSERPSERPMSERPSERPMSERP 59
E +S+ P P +PM P P+ ERP+ P M + P E R
Sbjct: 510 EASLSQVPGVAFAPVMP--QPMPVEPVPVPTVALERPVCPAPPLIAM-QGPGETSGIVRV 566
Query: 60 SERPMSERPMSERPSE-RPMSERPMSERPSERPSERLMSERPMSERPSERPM--SERPSE 116
ER RP P+ R S+ + +R + +E + + +P + ++P E
Sbjct: 567 RER---WRPAPWTPNPPRSPSQMSVRDRLARLRAEAQPYQASVEVQPPQLTQVSPQQPME 623
Query: 117 RPM---SERPSERPMSERPMSERPSERPMSERPMSERPSERPMSER 159
P+ + P S+ R P + + P ++P+S+
Sbjct: 624 YPLEPEQQMFPGSPFSQVADVMRAGGVPAMQPQYFDLPLQQPISQG 669
Score = 30.0 bits (67), Expect = 2.5
Identities = 37/165 (22%), Positives = 56/165 (33%), Gaps = 21/165 (12%)
Query: 19 PSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPMSERPMSERPSERPM 78
+ P P +RP E +S+ P P P+ P ERP+ P M
Sbjct: 495 CAPVPAPAGPIVRPWEASLSQVPGVAFAPVMPQPMPVEPVPVPTVALERPVCPAPPLIAM 554
Query: 79 SERPMSERPSERPSERLMSER----PMSERPSERPMSERPSERPMSERPSERPMSERPMS 134
+ P E + ER P + P P +R R E + +
Sbjct: 555 ------QGPGETSGIVRVRERWRPAPWTPNPPRSPSQMSVRDRLARLRA-EAQPYQASVE 607
Query: 135 ERPSERPMSERPMSERPSERPMSERPLKDRLKLF--SPLRAVATV 177
+P + ++PM E PL+ ++F SP VA V
Sbjct: 608 VQPPQLTQV-------SPQQPM-EYPLEPEQQMFPGSPFSQVADV 644
Score = 29.3 bits (65), Expect = 3.9
Identities = 32/166 (19%), Positives = 66/166 (39%), Gaps = 19/166 (11%)
Query: 7 SERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPM-- 64
E + ER P + P PS+ + +R + +P + + +P +
Sbjct: 558 GETSGIVRVRERWRPAPWTPNPPRSPSQMSVRDRLARLRAEAQPYQASVEVQPPQLTQVS 617
Query: 65 SERPMSERPSERPMSERPMSER------------PSERPSERLMS-ERPMSERPSERPMS 111
++PM E P E P S P+ +P + ++P+S+ P+
Sbjct: 618 PQQPM-EYPLEPEQQMFPGSPFSQVADVMRAGGVPAMQPQYFDLPLQQPISQGAPLAPL- 675
Query: 112 ERPSERPMSERPSERPMS-ERPMSERPSERPMSERPMSERPSERPM 156
R S P+ P+ +P + P++E ++ + + ++P E P+
Sbjct: 676 -RASMGPVPPVPATQPQYFDIPLTEPINQGASAAHFLPQQPMEGPL 720
>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family. This model
represents a subfamily of RNA splicing factors
including the Pad-1 protein (N. crassa), CAPER (M.
musculus) and CC1.3 (H.sapiens). These proteins are
characterized by an N-terminal arginine-rich, low
complexity domain followed by three (or in the case of
4 H. sapiens paralogs, two) RNA recognition domains
(rrm: pfam00706). These splicing factors are closely
related to the U2AF splicing factor family (TIGR01642).
A homologous gene from Plasmodium falciparum was
identified in the course of the analysis of that genome
at TIGR and was included in the seed.
Length = 457
Score = 31.8 bits (72), Expect = 0.54
Identities = 16/84 (19%), Positives = 22/84 (26%), Gaps = 1/84 (1%)
Query: 8 ERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPMSER 67
+R R ++ ER R R S R +R R S P+
Sbjct: 4 DRERGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYRPRG 63
Query: 68 P-MSERPSERPMSERPMSERPSER 90
R R +ER
Sbjct: 64 DRSYRRDDRRSGRNTKEPLTEAER 87
Score = 30.2 bits (68), Expect = 1.7
Identities = 19/87 (21%), Positives = 27/87 (31%), Gaps = 6/87 (6%)
Query: 57 ERPSERPMSERPMSERPSERPM---SERPMSERPSERPSERLMSERPMSERPSERPMSER 113
+R R ++ S++ ER R S R +R R R S P+ R
Sbjct: 4 DRERGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYY---R 60
Query: 114 PSERPMSERPSERPMSERPMSERPSER 140
P R R +ER
Sbjct: 61 PRGDRSYRRDDRRSGRNTKEPLTEAER 87
Score = 27.9 bits (62), Expect = 7.9
Identities = 15/70 (21%), Positives = 17/70 (24%), Gaps = 3/70 (4%)
Query: 7 SERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPMSE 66
ER R S S R R S P+ RP R R
Sbjct: 21 RERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYY---RPRGDRSYRRDDRRSGRN 77
Query: 67 RPMSERPSER 76
+ER
Sbjct: 78 TKEPLTEAER 87
>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 484
Score = 31.9 bits (73), Expect = 0.56
Identities = 23/147 (15%), Positives = 43/147 (29%), Gaps = 14/147 (9%)
Query: 15 MSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPMSERPMSERPS 74
++ + P + +P + RP+ P + E + R +
Sbjct: 51 LAPPAAAAPAAAQPPPAAAP-AAVSRPAAPAAEPAP---WLVEHAKRLTAQREQLVARAA 106
Query: 75 ERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMSERPSERPMSERPMS 134
E + P+ER +E + RP + +
Sbjct: 107 APAAPEA----QAPAAPAERAAAENAARRLARAAAAAPRP---RVPADAAAAV---ADAV 156
Query: 135 ERPSERPMSERPMSERPSERPMSERPL 161
+ ER +++ M E S R M E L
Sbjct: 157 KARIERIVNDTVMQELRSLRGMLEEQL 183
Score = 28.4 bits (64), Expect = 5.9
Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 16/140 (11%)
Query: 2 SERPMSERPSDRP---MSERPSERPMSERPSL-RPSERPMSERPSERPMSERPSERPM-- 55
+ P + +P RP+ P L ++R ++R + P+
Sbjct: 56 AAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQA 115
Query: 56 SERPSERPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPS 115
P+ER +E + RP + + R + +
Sbjct: 116 PAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKAR----------IERIVN 165
Query: 116 ERPMSERPSERPMSERPMSE 135
+ M E S R M E ++
Sbjct: 166 DTVMQELRSLRGMLEEQLAS 185
>gnl|CDD|218883 pfam06075, DUF936, Plant protein of unknown function (DUF936).
This family consists of several hypothetical proteins
from Arabidopsis thaliana and Oryza sativa. The function
of this family is unknown.
Length = 564
Score = 31.3 bits (71), Expect = 0.76
Identities = 33/208 (15%), Positives = 59/208 (28%), Gaps = 16/208 (7%)
Query: 2 SERPMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSE 61
++ + + +R R S S + S S + RP
Sbjct: 118 ADSLAFFSDAVIQVIKRKKASSAPRRGSWDSSSKSASIDSSPTVIGPRPRSFSELNLTDR 177
Query: 62 RPMSERP-----MSERPSERPMSERPMSERPSERPSERL----MSERPMSERPSERPMSE 112
P R + PS R S S RL + ++ + R
Sbjct: 178 TPAKVRSSRSELGAPSPSGGTSCPSSSGGRRSSIGSRRLRGSASLRKKVAVLSAPRKPGS 237
Query: 113 RPSER----PMSERPSERPM---SERPMSERPSERPMSERPMSERPSERPMSERPLKDRL 165
R S+ ++ P +R ++ S+ + P S + P K
Sbjct: 238 RSSDCKSSPRARSSSAKSPFKSSIQRKATKALSKLSLRASPKDTSKSSKSEVAPPKKSEA 297
Query: 166 KLFSPLRAVATVKISPNKLDVRTLILGR 193
K+ S + +S + L LG+
Sbjct: 298 KVPSSSKKWTDGNVSWDSLPSSLSKLGK 325
>gnl|CDD|130009 TIGR00934, 2a38euk, potassium uptake protein, Trk family. The
proteins of the Trk family are derived from
Gram-negative and Gram-positive bacteria, yeast and
wheat. The proteins of E. coli K12 TrkH and TrkG as well
as several yeast proteins have been functionally
characterized.The E. coli TrkH and TrkG proteins are
complexed to two peripheral membrane proteins, TrkA, an
NAD-binding protein, and TrkE, an ATP-binding protein.
This complex forms the potassium uptake system. This
family is specific for the eukaryotic Trk system
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 800
Score = 31.1 bits (70), Expect = 1.2
Identities = 18/150 (12%), Positives = 32/150 (21%), Gaps = 8/150 (5%)
Query: 9 RPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPMSERP 68
RPS + + R +E + M+
Sbjct: 275 RPSTSDIERNSQSLTRRYDDKSFDKAVRL-RRSKTIDRAEACDLEELDRAKDFEKMTYDN 333
Query: 69 MSERPSERPMSERP------MSERPSERPSERLMSERPMSERPSERPMSERPSERPMSER 122
++ + S+R + S SE PS
Sbjct: 334 WKAHHRKKKNFRPRGWNLKFRKASRFPKDSDRNYEDNGNHLSASSSFGSEEPSLSSEENL 393
Query: 123 PSERPMSERPMSERPSERPMSERPMSERPS 152
S + MS +S +P+
Sbjct: 394 YPTYNKKRED-SRHTLSKTMSTNYLSWQPT 422
Score = 30.3 bits (68), Expect = 1.6
Identities = 20/141 (14%), Positives = 34/141 (24%), Gaps = 3/141 (2%)
Query: 17 ERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPMSERPMSERPSER 76
E+ S S+ S + + RPS + + R R
Sbjct: 252 EKSSANSRSDERSSESIQEQVERRPSTSDIERNSQSLTRRYDDKSFDKAVR--LRRSKTI 309
Query: 77 PMSERPMSERPSERPSERLMSERPMSERPSERPMS-ERPSERPMSERPSERPMSERPMSE 135
+E E M+ ++ R + S+R +
Sbjct: 310 DRAEACDLEELDRAKDFEKMTYDNWKAHHRKKKNFRPRGWNLKFRKASRFPKDSDRNYED 369
Query: 136 RPSERPMSERPMSERPSERPM 156
+ S SE PS
Sbjct: 370 NGNHLSASSSFGSEEPSLSSE 390
Score = 30.3 bits (68), Expect = 1.8
Identities = 18/119 (15%), Positives = 32/119 (26%), Gaps = 2/119 (1%)
Query: 8 ERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSER--PMSERPSERPMS 65
R +E + + + + RP + S
Sbjct: 304 RRSKTIDRAEACDLEELDRAKDFEKMTYDNWKAHHRKKKNFRPRGWNLKFRKASRFPKDS 363
Query: 66 ERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMSERPS 124
+R + + S SE PS E L S +S+ S +S +P+
Sbjct: 364 DRNYEDNGNHLSASSSFGSEEPSLSSEENLYPTYNKKREDSRHTLSKTMSTNYLSWQPT 422
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional.
Length = 475
Score = 30.7 bits (69), Expect = 1.2
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 32 PSERPMSERPSERPMSERPSERPMSERPSER--PMSERPMSERPS-ERPMSERPMSERPS 88
+E+P PS P + ++ P + P +E+P ++P ER
Sbjct: 13 EAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASL 72
Query: 89 ERPSERLMSERPMSER 104
+ + ++ + R
Sbjct: 73 WKLEDFVVEPQEGKTR 88
Score = 28.7 bits (64), Expect = 5.7
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 19 PSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPMSERPMSERP 73
+E+P PS + P + P ++ + + +E+P ++P ER
Sbjct: 13 EAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAA-AAPRAEKPKKDKPRRERK 66
Score = 28.3 bits (63), Expect = 6.0
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 7/69 (10%)
Query: 97 SERPMSERPSERPMSERPSERPMSERPSER--PMSERPMSERPSERPMSERPMSERPSER 154
+E+P PS P + ++ P + P +E+P ++P ER +
Sbjct: 14 AEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAP----RAEKPKKDKPRRERKP-K 68
Query: 155 PMSERPLKD 163
P S L+D
Sbjct: 69 PASLWKLED 77
>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog.
Length = 808
Score = 30.7 bits (69), Expect = 1.2
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 48 ERPSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSE 107
E +S PS+ E+ + P ++ P++E + P+S+ +
Sbjct: 22 ASSPETDLSLSPSQS---EQNIENDGQNSPETQSPLTELQPSPLPPNTTLDAPVSDSQGD 78
Query: 108 RPMSERPSERPMSERPSERPMSER 131
SE+ + P S P+ P R
Sbjct: 79 ESSSEQQPQNPNSTEPAPPPKKRR 102
Score = 30.0 bits (67), Expect = 2.3
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 2 SERPMSERPSDRPMSERP--SERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERP 59
SE+ + + P ++ P +P P+ + P+S+ + SE+ + P S P
Sbjct: 36 SEQNIENDGQNSPETQSPLTELQPSPLPPNT-TLDAPVSDSQGDESSSEQQPQNPNSTEP 94
Query: 60 SERPMSER 67
+ P R
Sbjct: 95 APPPKKRR 102
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 30.1 bits (68), Expect = 2.1
Identities = 12/81 (14%), Positives = 22/81 (27%), Gaps = 3/81 (3%)
Query: 76 RPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMSERPSERPMSERPMSE 135
P P+ P P+ RP + RP+ P + P +
Sbjct: 386 SAAWGAPTPAAPAAPPPAA---APPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAA 442
Query: 136 RPSERPMSERPMSERPSERPM 156
S ++ ++P
Sbjct: 443 AASAGDRWRAFVAFVKGKKPA 463
Score = 29.3 bits (66), Expect = 3.8
Identities = 11/87 (12%), Positives = 22/87 (25%), Gaps = 6/87 (6%)
Query: 5 PMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPM 64
P + + P P+ RP + RP+ P + P
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAA------APPVPPAAPARPAAARPAPAPAPPAAAAPPA 435
Query: 65 SERPMSERPSERPMSERPMSERPSERP 91
+ S ++ ++P
Sbjct: 436 RSADPAAAASAGDRWRAFVAFVKGKKP 462
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 29.6 bits (66), Expect = 2.7
Identities = 24/146 (16%), Positives = 55/146 (37%), Gaps = 4/146 (2%)
Query: 9 RPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMS---ERPSERPMSERPSERPMS 65
R ++ S + P E+ S +P ++ E+ ER E + + + P S
Sbjct: 179 RNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPAS 238
Query: 66 ERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMSERPSE 125
++E E ++ P P E +E +++ + ++ E+ ++ +
Sbjct: 239 AASVAE-ADEASLANTVSGTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKK 297
Query: 126 RPMSERPMSERPSERPMSERPMSERP 151
S+ +E+P+ + E P
Sbjct: 298 HHHHRCHHSDGGAEQPVQNGAVEEEP 323
>gnl|CDD|218658 pfam05616, Neisseria_TspB, Neisseria meningitidis TspB protein.
This family consists of several Neisseria meningitidis
TspB virulence factor proteins.
Length = 502
Score = 29.6 bits (66), Expect = 2.8
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 40 RPSERPMS-ERPSERPMSE-RPSERPMSERPMSERPSERPMSERPMSERPSERPSERLMS 97
RP P S E P +P+ E P+E P + E P RP E P P +
Sbjct: 316 RPDLTPGSAEAPEAQPLPEVSPAENPANNPNPRENPGTRPNPE----PDPDLNPDANPDT 371
Query: 98 ERPMSERPSERPMSERPSERPMSER 122
+ RP + +RP+ R ER
Sbjct: 372 DGQPGTRPDSPAVPDRPNGRHRKER 396
Score = 28.0 bits (62), Expect = 9.2
Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 16/97 (16%)
Query: 58 RPSERPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSER 117
RP P S +E P +P+ E +E P+ P+ R E P RP P
Sbjct: 316 RPDLTPGS----AEAPEAQPLPEVSPAENPANNPNPR--------ENPGTRP---NPEPD 360
Query: 118 PMSERPSERPMSERPMSERPSERPMSERPMSERPSER 154
P P P ++ RP + +RP ER
Sbjct: 361 P-DLNPDANPDTDGQPGTRPDSPAVPDRPNGRHRKER 396
>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional.
Length = 580
Score = 29.3 bits (66), Expect = 3.1
Identities = 23/144 (15%), Positives = 32/144 (22%), Gaps = 7/144 (4%)
Query: 41 PSERPMSERPSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSERPSERLMSERP 100
P S P ++P P S P + P
Sbjct: 56 PPRETGSGGGVATSTIYTVPRPPRGPEQTLDKPDSLPASRELPPGPTPVPPGGFRGASSP 115
Query: 101 MSERPSERPMSERPSERPMS------ERPSERPMSERPMSERPSERPMSERPMSERPSER 154
S P P+ S +SE RP + + +
Sbjct: 116 RLGADSTSPRFLYQVNFPVILAPIGESNSSSEELSEEEEHSRPPPSESLKVKNGGKVYPK 175
Query: 155 PMSERPLKDRLKLFSPLRAVATVK 178
S+ R FS L A K
Sbjct: 176 GFSKHKTHKR-SEFSGLTKKAARK 198
Score = 29.0 bits (65), Expect = 3.9
Identities = 20/125 (16%), Positives = 31/125 (24%), Gaps = 5/125 (4%)
Query: 14 PMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPMSERPMSERP 73
S RP P + +P P S P P + P
Sbjct: 63 GGGVATSTIYTVPRPPRGPEQTLD--KPDSLPASRELPPGPTPVPPGGFRGASSPRLGAD 120
Query: 74 SERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMSERPSERPMSERPM 133
S P ++ P SE SE RP + + + +
Sbjct: 121 STSPRFLYQVNFPVILAPIG---ESNSSSEELSEEEEHSRPPPSESLKVKNGGKVYPKGF 177
Query: 134 SERPS 138
S+ +
Sbjct: 178 SKHKT 182
>gnl|CDD|225629 COG3087, FtsN, Cell division protein [Cell division and chromosome
partitioning].
Length = 264
Score = 29.0 bits (65), Expect = 3.4
Identities = 20/125 (16%), Positives = 46/125 (36%), Gaps = 10/125 (8%)
Query: 40 RPSER-----PMSERPSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSERPS-- 92
+P E + +R P P+ +ER E+ E +P++
Sbjct: 59 KPEEVWSYIKALEDRQIGVPQPTEPAAVKDAERLTPEQRQLLEQMEVDQKAQPTQLGEQP 118
Query: 93 -ERLMSERPMSERPSERPMSERPSERPMSERPSERPMSERPMSERPSERPMSERPMSERP 151
+ + E+P ++ + + + + +P RP +P++ P+ P+ + P +E
Sbjct: 119 EQARIEEQPRTQSQKAQSQAT--TVQTQPVKPKPRPEKPQPVAPAPAPEPVEKAPKAEAA 176
Query: 152 SERPM 156
Sbjct: 177 PPPKP 181
>gnl|CDD|215556 PLN03064, PLN03064, alpha,alpha-trehalose-phosphate synthase
(UDP-forming); Provisional.
Length = 934
Score = 29.4 bits (66), Expect = 3.5
Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 1/74 (1%)
Query: 48 ERPSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSERPSERLM-SERPMSERPS 106
E PS+ P R + RPS + S R S+ + L+ S + +
Sbjct: 813 ELPSDSPAIARSRSPDGLKSSGDRRPSGKLPSSRSNSKNSQGKKQRSLLSSAKSGVNHAA 872
Query: 107 ERPMSERPSERPMS 120
RPS +
Sbjct: 873 SHGSDRRPSPEKIG 886
Score = 28.2 bits (63), Expect = 7.7
Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 8/82 (9%)
Query: 71 ERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMSERPSERPMSE 130
E PS+ P R S + +R RP + PS R S+ + S S
Sbjct: 813 ELPSDSPAIARSRSPDGLKSSGDR----RPSGKLPSSRSNSKNSQGKKQRSLLS----SA 864
Query: 131 RPMSERPSERPMSERPMSERPS 152
+ + RP E+
Sbjct: 865 KSGVNHAASHGSDRRPSPEKIG 886
>gnl|CDD|236658 PRK10153, PRK10153, DNA-binding transcriptional activator CadC;
Provisional.
Length = 517
Score = 28.9 bits (65), Expect = 4.3
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 13 RPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPS---ERPMSERPSERP 63
SE E ++ P P P + PSE ++ P+ R + + P++
Sbjct: 105 IWYSEEEGEEILASSPPPIPEAVPATAEPSESANAQFPAPPLTRAVCQSPAKSK 158
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional.
Length = 333
Score = 28.8 bits (65), Expect = 4.4
Identities = 22/129 (17%), Positives = 47/129 (36%), Gaps = 11/129 (8%)
Query: 18 RPSERPMSERPSLRPS----ERPMSERPSERPMSERPSERPMSERPSERPMSERPMSERP 73
+ E + RPS +P R ++P E + + + RP
Sbjct: 72 NHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRP----AQPAPQ 127
Query: 74 SERPMSERPMSERPSERPSERLMSERPM--SERPSERPMSERPSERPMSERPSERPMSER 131
+ + +P E+P ++P ++ P P + +P+E P++ E
Sbjct: 128 PVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAE-PVAAPQPEPVAEPA 186
Query: 132 PMSERPSER 140
P+ ++P +
Sbjct: 187 PVMDKPKRK 195
>gnl|CDD|140276 PTZ00249, PTZ00249, variable surface protein Vir28; Provisional.
Length = 516
Score = 28.8 bits (64), Expect = 4.6
Identities = 21/101 (20%), Positives = 33/101 (32%), Gaps = 2/101 (1%)
Query: 22 RPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPMSERPMSERPSERPMSER 81
P+ PS + +R + P+ +S S+ E+ + SER S + P+
Sbjct: 282 PPLVTVPSSKAHDRNPVQTPTPTSVSGYSSQAKGLEKQA-GGESERTSSVPSEQFPLPLP 340
Query: 82 PMSERPSERPSERLMSERPMSE-RPSERPMSERPSERPMSE 121
+ P E SE P P E E
Sbjct: 341 VLLPLGQSGPLESSESEETDEYAGPKGLPEPELELVELQEE 381
>gnl|CDD|227417 COG5085, COG5085, Predicted membrane protein [Function unknown].
Length = 230
Score = 28.3 bits (63), Expect = 5.6
Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 3/80 (3%)
Query: 69 MSERPSERPM-SERPMSERPSER-PSERLMSERPMSERPSERPMSERPSERPMSERPSER 126
M + PM E R S + + P +R E P E + PS+
Sbjct: 1 MEDMRESMPMDVEGEDGIRNSPKQRQVECLHGSPKKKRDME-PSDEELGHTQKVKYPSDA 59
Query: 127 PMSERPMSERPSERPMSERP 146
+ RPS ++ P
Sbjct: 60 LGLATKKAWRPSVVNIARVP 79
>gnl|CDD|220815 pfam10577, UPF0560, Uncharacterized protein family UPF0560. This
family of proteins has no known function.
Length = 805
Score = 28.7 bits (64), Expect = 6.1
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 11/136 (8%)
Query: 1 MSERPMSERPSDRPMSERPSERPMSERPSLRPS--------ERPMSERPSERPMSERPSE 52
M+E + + P ER + PS + + SE + E S
Sbjct: 669 MNEPKSARKLRHGPREEREQTGEKTAPPSTAYTKLVYLEDGDPSSSESRTTVCSPEDSSL 728
Query: 53 RPMSERPSERPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSE 112
RP+ + S+ + P E R ++ S R RP E +
Sbjct: 729 RPLLDEGSKVSGEQAPTVEESRGRSSTDSSREPLSSPRRRR---GRRPEDELDDDDGDDA 785
Query: 113 RPSERPMSERPSERPM 128
++ ++ ERP+
Sbjct: 786 GEDKKSPWQKREERPL 801
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast
subunit 62; Provisional.
Length = 576
Score = 28.4 bits (63), Expect = 6.5
Identities = 34/177 (19%), Positives = 54/177 (30%), Gaps = 28/177 (15%)
Query: 8 ERPSDRPMSERPSERPMSERP--------SLRPSERPMSERPSERPMSERPSE------- 52
E PS E P + + RP L+P P+ PS P S + +
Sbjct: 350 EAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPPTSPIPTPPSSSPASSKSVDAVAKPAE 409
Query: 53 ---RPMSERPSERPMSERPMSERPSERPMS--------ERPMSERPS-ERPSERLMSERP 100
P S P E E RP+S + P S P+ +S
Sbjct: 410 PDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTS 469
Query: 101 MSERPSERPMSERPSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSERPMS 157
+ + ++ + RP+S + + + P S P + P S
Sbjct: 470 SVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYD-DLKPPTSPSPAAPVGKVAPSS 525
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 28.4 bits (63), Expect = 7.1
Identities = 18/83 (21%), Positives = 25/83 (30%), Gaps = 6/83 (7%)
Query: 50 PSERPMSERPSERPMSERPMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERP 109
P+ SE ER + P+ + S P E L SE P
Sbjct: 361 PAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEE--PAALASEAHDETEPEV-- 416
Query: 110 MSERPSERPMSERPSERPMSERP 132
E+ + P +P E P
Sbjct: 417 -PEKAAPIPDPAKPDE-LAVAGP 437
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 28.2 bits (63), Expect = 7.6
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 2 SERPMSERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSE 57
+ +S P PS P + RP+ E+ + S+ + RP+ E
Sbjct: 423 TPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKI--PVSKVSSLGPSTLRPIQE 476
>gnl|CDD|236394 PRK09169, PRK09169, hypothetical protein; Validated.
Length = 2316
Score = 28.5 bits (64), Expect = 7.7
Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 13/90 (14%)
Query: 18 RPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPMSERPMSERPSERP 77
R + RP RP R + P R + P RP R ++R P
Sbjct: 8 HKRRRDAAAPADPRPRRRP---RLGDAPA-PRTARADSGATPRGRP---RAGADRE---P 57
Query: 78 MSERPMSERPSERPSERLMSERPMSERPSE 107
SE+ R ER +R + + ++R +
Sbjct: 58 TSEQ---LRDYERWLDRAAAGQLDAQREQQ 84
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 28.3 bits (63), Expect = 8.0
Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 1/116 (0%)
Query: 8 ERPSDRPMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPMSER 67
P + + +P+E+ P + S+ SE+ S + + ++ + S++ E
Sbjct: 712 GHPYKKGVPPKPAEKDSLSAPKKQTSKTA-SEKSSSKGKRKHKNDEEADKIESKKQRLEE 770
Query: 68 PMSERPSERPMSERPMSERPSERPSERLMSERPMSERPSERPMSERPSERPMSERP 123
S S S R S R E + S S E P +RP
Sbjct: 771 KSSSCSPSSSSSHHHSSSNKESRKSSRNKEEEMLPSPSSPLSSSSPKPEHPSRKRP 826
>gnl|CDD|217298 pfam02948, Amelogenin, Amelogenin. Amelogenins play a role in
biomineralisation. They seem to regulate the formation
of crystallites during the secretory stage of tooth
enamel development. thought to play a major role in the
structural organisation and mineralisation of developing
enamel. They are found in the extracellular matrix.
Mutations in X-chromosomal amelogenin can cause
Amelogenesis imperfecta.
Length = 174
Score = 27.6 bits (61), Expect = 8.2
Identities = 14/74 (18%), Positives = 28/74 (37%)
Query: 87 PSERPSERLMSERPMSERPSERPMSERPSERPMSERPSERPMSERPMSERPSERPMSERP 146
P ++P + PM ++P + P++ P+ + P ++P +P +P
Sbjct: 78 PPQQPMMPVPGHHPMVPMTGQQPHLQPPAQHPLQPTYGQNPQPQQPTHTQPPVQPQQPAD 137
Query: 147 MSERPSERPMSERP 160
PM P
Sbjct: 138 PQPGQPMFPMQPLP 151
>gnl|CDD|173184 PRK14721, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 420
Score = 28.0 bits (62), Expect = 9.2
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 14 PMSERPSERPMSERPSLRPSERPMSERPSERPMSERPSERPMSERPSERPMSERPMSERP 73
E + + +P+ P ++P S +P + ++P+ +P P+ S M E
Sbjct: 54 DTPEEATIPETTVKPTAPPRQKPASGQPQPPAIHKQPATQP----PAADIPSANIMQEIR 109
Query: 74 SERPMSERPMSERPSERPSER 94
+ R M E ++ S+R
Sbjct: 110 AMRQMLEEQLTTMGWSNFSQR 130
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.126 0.365
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,803,449
Number of extensions: 1550436
Number of successful extensions: 2252
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1626
Number of HSP's successfully gapped: 328
Length of query: 351
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 253
Effective length of database: 6,590,910
Effective search space: 1667500230
Effective search space used: 1667500230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (26.7 bits)