BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5718
(720 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 248 bits (633), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 143/267 (53%), Positives = 164/267 (61%), Gaps = 56/267 (20%)
Query: 7 ADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPXXXXXXXXXXXXKFYLFDKVFKPN 66
A+REI AEDSI+VVCRFRPLN SEEKAGSKF+VKFP K YLFDKVFKPN
Sbjct: 3 AEREIPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLFDKVFKPN 62
Query: 67 A-------------------------------------TQEKVYDEAAKSI--------- 80
A T E V ++ K
Sbjct: 63 ASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDI 122
Query: 81 --------VSVQF-VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGK 130
V+++F + Y + +D++R + + H + + + GATERFV
Sbjct: 123 FNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFVSS 182
Query: 131 PEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGS 190
PE+VFEVIEEGK+NRHIAVTNMNEHSSRSHSVFLINVKQENLEN+KKLSGKLYLVDLAGS
Sbjct: 183 PEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGS 242
Query: 191 EKVSKTGAEGTVLDEAKNINKSLSADG 217
EKVSKTGAEGTVLDEAKNINKSLSA G
Sbjct: 243 EKVSKTGAEGTVLDEAKNINKSLSALG 269
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 188 bits (478), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 114/261 (43%), Positives = 143/261 (54%), Gaps = 59/261 (22%)
Query: 13 AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPXXXXXXXXXXXXKFYLFDKVFKPNATQE-- 70
AE +I+V+CRFRPLN SE G K+I KF K Y FD+VF+ + +QE
Sbjct: 5 AECNIKVMCRFRPLNESEVNRGDKYIAKF---QGEDTVVIASKPYAFDRVFQSSTSQEQV 61
Query: 71 ------------------------------------KVYDEAAKSIVSVQFVDADQYMVS 94
K++D I+ D Y+ S
Sbjct: 62 YNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYS 121
Query: 95 -----------------VDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGKPEEVFE 136
+D++R + + + H + + + G TERFV P+EV +
Sbjct: 122 MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMD 181
Query: 137 VIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKT 196
I+EGK+NRH+AVTNMNEHSSRSHS+FLINVKQEN + E+KLSGKLYLVDLAGSEKVSKT
Sbjct: 182 TIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKT 241
Query: 197 GAEGTVLDEAKNINKSLSADG 217
GAEG VLDEAKNINKSLSA G
Sbjct: 242 GAEGAVLDEAKNINKSLSALG 262
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 188 bits (478), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 114/261 (43%), Positives = 143/261 (54%), Gaps = 59/261 (22%)
Query: 13 AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPXXXXXXXXXXXXKFYLFDKVFKPNATQE-- 70
AE +I+V+CRFRPLN SE G K+I KF K Y FD+VF+ + +QE
Sbjct: 5 AECNIKVMCRFRPLNESEVNRGDKYIAKF---QGEDTVVIASKPYAFDRVFQSSTSQEQV 61
Query: 71 ------------------------------------KVYDEAAKSIVSVQFVDADQYMVS 94
K++D I+ D Y+ S
Sbjct: 62 YNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYS 121
Query: 95 -----------------VDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGKPEEVFE 136
+D++R + + + H + + + G TERFV P+EV +
Sbjct: 122 MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMD 181
Query: 137 VIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKT 196
I+EGK+NRH+AVTNMNEHSSRSHS+FLINVKQEN + E+KLSGKLYLVDLAGSEKVSKT
Sbjct: 182 TIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKT 241
Query: 197 GAEGTVLDEAKNINKSLSADG 217
GAEG VLDEAKNINKSLSA G
Sbjct: 242 GAEGAVLDEAKNINKSLSALG 262
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 113/261 (43%), Positives = 143/261 (54%), Gaps = 59/261 (22%)
Query: 13 AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPXXXXXXXXXXXXKFYLFDKVFKPNATQE-- 70
AE +I+V+CRFRPLN SE G K++ KF K Y FD+VF+ + +QE
Sbjct: 5 AECNIKVMCRFRPLNESEVNRGDKYVAKF---QGEDTVMIASKPYAFDRVFQSSTSQEQV 61
Query: 71 ------------------------------------KVYDEAAKSIVSVQFVDADQYMVS 94
K++D I+ D Y+ S
Sbjct: 62 YNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRIVQDIFNYIYS 121
Query: 95 -----------------VDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGKPEEVFE 136
+D++R + + + H + + + G TERFV P+EV +
Sbjct: 122 MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMD 181
Query: 137 VIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKT 196
I+EGK+NRH+AVTNMNEHSSRSHS+FLINVKQEN + E+KLSGKLYLVDLAGSEKVSKT
Sbjct: 182 TIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKT 241
Query: 197 GAEGTVLDEAKNINKSLSADG 217
GAEG VLDEAKNINKSLSA G
Sbjct: 242 GAEGAVLDEAKNINKSLSALG 262
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 97/237 (40%), Positives = 126/237 (53%), Gaps = 58/237 (24%)
Query: 13 AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPXXXXXXXXXXXXKFYLFDKVFKPNATQE-- 70
AE SI+V+CRFRPLN +E G KFI KF K Y+FD+V PN TQE
Sbjct: 4 AECSIKVMCRFRPLNEAEILRGDKFIPKF--KGEETVVIGQGKPYVFDRVLPPNTTQEQV 61
Query: 71 ------------------------------------KVYDEAAKSIV------------- 81
K++D I+
Sbjct: 62 YNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDHIYS 121
Query: 82 ---SVQF-VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGKPEEVFE 136
+++F + + + +D++R + + + H + + + G TERFV PEEV +
Sbjct: 122 MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTERFVSSPEEVMD 181
Query: 137 VIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKV 193
VI+EGKANRH+AVTNMNEHSSRSHS+FLIN+KQEN+E EKKLSGKLYLVDLAGSEKV
Sbjct: 182 VIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLAGSEKV 238
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 122/264 (46%), Gaps = 58/264 (21%)
Query: 12 AAEDSIRVVCRFRPLNHSEEKAGSKFIVKF--PXXXXXXXXXXXXKFY------------ 57
++ +SI+VV RFRP N E ++G + IV F P F
Sbjct: 3 SSANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQS 62
Query: 58 -LFDKVFKP---------NATQ--------------------------------EKVYDE 75
+FD KP N T E+++
Sbjct: 63 DIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTS 122
Query: 76 AAKSIVSVQFVDADQYM-VSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGKPEE 133
S ++++ YM + ++R+R + + H + V+ G E +V +E
Sbjct: 123 ILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQE 182
Query: 134 VFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKV 193
V+EV+ G R +A TNMN+ SSRSHS+F+I + Q+N+E SG+L+LVDLAGSEKV
Sbjct: 183 VYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEKV 242
Query: 194 SKTGAEGTVLDEAKNINKSLSADG 217
KTGA G L+EAK INKSLSA G
Sbjct: 243 GKTGASGQTLEEAKKINKSLSALG 266
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 71/109 (65%), Gaps = 1/109 (0%)
Query: 109 MCEHSLMHLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVK 168
+C L V PG TE V +++ +V E G NR TN+NEHSSRSH++ ++ V+
Sbjct: 158 LCPDGSGQLYV-PGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVR 216
Query: 169 QENLENEKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
+ + +GKL LVDLAGSE+V K+GAEG+ L EA++INKSLSA G
Sbjct: 217 GVDCSTGLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALG 265
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 113/269 (42%), Gaps = 79/269 (29%)
Query: 17 IRVVCRFRPLNHSEEKAGSK--------FIVKFPXXXXXXXXXXXXKFYLFDKVFKPNAT 68
IRV CR RPLN E K F V+ P K +++D+VF A+
Sbjct: 15 IRVYCRIRPLNEKESSEREKQMLTTVDEFTVEHPWKDDKR------KQHIYDRVFDMRAS 68
Query: 69 QEKVYDEAAKSIVSVQFVDADQYMVSV--------------------------------- 95
Q+ ++++ + S D Y V +
Sbjct: 69 QDDIFEDTKYLVQSA----VDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTPRATKELFN 124
Query: 96 ----DRLRSDHQLKAST--MCEHSLMHLIVFPGATERF---------------------V 128
D R LKA + + +L+ L++ P + R +
Sbjct: 125 ILKRDSKRFSFSLKAYMVELYQDTLVDLLL-PKSARRLKLEIKKDSKGMVFVENVTTIPI 183
Query: 129 GKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLA 188
EE+ ++E G RH++ TNMNE SSRSH + + ++ +L+ + GKL VDLA
Sbjct: 184 STLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQTQSAARGKLSFVDLA 243
Query: 189 GSEKVSKTGAEGTVLDEAKNINKSLSADG 217
GSE+V K+G+ G L EA++INKSLSA G
Sbjct: 244 GSERVKKSGSAGNQLKEAQSINKSLSALG 272
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 85/158 (53%), Gaps = 12/158 (7%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVK-QENLENEK 176
I G + V E+ ++++G ANRH+A T MN+ SSRSHS+F++ ++ E +EN++
Sbjct: 171 IYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKE 230
Query: 177 KLS-GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG--AGKLEEEFT------- 226
+ GKL LVDLAGSE+ SKTGA G L E IN SLSA G KL E T
Sbjct: 231 VIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDS 290
Query: 227 -VARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEY 263
+ RL + K L+ S S+ +E + Y
Sbjct: 291 KLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRY 328
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 64/95 (67%), Gaps = 4/95 (4%)
Query: 127 FVGKP-EEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVK--QENLENEKKLS-GKL 182
FV K +E+ V+ G NR + TNMNEHSSRSH++F+I ++ + L+ E + GKL
Sbjct: 195 FVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKL 254
Query: 183 YLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
LVDLAGSE+ +KTGA+G L EA IN SLSA G
Sbjct: 255 NLVDLAGSERQAKTGAQGERLKEATKINLSLSALG 289
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 12 AAEDSIRVVCRFRPLNHSEEKAGSKFIV-------KFPXXXXXXXXXXXXKFYLFDKVFK 64
+ +S+RVV R RP+N E+ A +V + K + FD V+
Sbjct: 18 GSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYD 77
Query: 65 PNATQEKVYDEAAKSIV 81
NA Q ++YDE + +V
Sbjct: 78 WNAKQFELYDETFRPLV 94
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 64/99 (64%), Gaps = 2/99 (2%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQEN--LENE 175
+ G + + E+ F ++ EG+ NR IA MN++SSRSH +F I ++ + L E
Sbjct: 194 VFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEE 253
Query: 176 KKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLS 214
K ++ K+ LVDLAGSE++ K+G+EG VL EA INKSLS
Sbjct: 254 KYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLS 292
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 74/133 (55%), Gaps = 15/133 (11%)
Query: 111 EHSLMHLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQE 170
EHS++ V G ++ V +++ ++ EG +R +A TNMNE SSRSH+VF I +
Sbjct: 172 EHSVLGPYV-DGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHT 230
Query: 171 NLENEKKLSG----KLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG--------- 217
+ + SG KL LVDLAGSE+ +KTGA G L E NINKSL+ G
Sbjct: 231 LYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQ 290
Query: 218 -AGKLEEEFTVAR 229
AGK + +F R
Sbjct: 291 SAGKNKNKFVPYR 303
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 56/86 (65%)
Query: 132 EEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSE 191
EE+ +I+ G RH T MNE SSRSH + + ++ NL+ + GKL VDLAGSE
Sbjct: 179 EELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSE 238
Query: 192 KVSKTGAEGTVLDEAKNINKSLSADG 217
+V K+G+ G L EA++INKSLSA G
Sbjct: 239 RVKKSGSAGNQLKEAQSINKSLSALG 264
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 17 IRVVCRFRPLNHSE----EKAGSKFIVKFPXXXXXXXXXXXXKFYLFDKVFKPNATQEKV 72
IRV CR RPL E E+ + + +F K +++D+VF NATQ+ V
Sbjct: 7 IRVYCRLRPLCEKEIIAKERNAIRSVDEF--TVEHLWKDDKAKQHMYDRVFDGNATQDDV 64
Query: 73 YDE 75
+++
Sbjct: 65 FED 67
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 4/89 (4%)
Query: 133 EVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLS----GKLYLVDLA 188
++ ++++ G R +A TNMNE SSRSH+VF I Q+ + E ++ K+ LVDLA
Sbjct: 207 DIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLA 266
Query: 189 GSEKVSKTGAEGTVLDEAKNINKSLSADG 217
GSE+ TGA+GT L E NINKSL+ G
Sbjct: 267 GSERADSTGAKGTRLKEGANINKSLTTLG 295
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 3/103 (2%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVF--LINVKQENLENE 175
++ G E V +EV++++E+G A R A T MN +SSRSHSVF I++K+ ++ E
Sbjct: 194 VIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE 253
Query: 176 KKLS-GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
+ + GKL LVDLAGSE + ++GA EA NIN+SL G
Sbjct: 254 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLG 296
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 3/103 (2%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVF--LINVKQENLENE 175
++ G E V +EV++++E+G A R A T MN +SSRSHSVF I++K+ ++ E
Sbjct: 185 VIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE 244
Query: 176 KKLS-GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
+ + GKL LVDLAGSE + ++GA EA NIN+SL G
Sbjct: 245 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLG 287
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 3/103 (2%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVF--LINVKQENLENE 175
++ G E V +EV++++E+G A R A T MN +SSRSHSVF I++K+ ++ E
Sbjct: 194 VIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE 253
Query: 176 KKLS-GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
+ + GKL LVDLAGSE + ++GA EA NIN+SL G
Sbjct: 254 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLG 296
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 64/99 (64%), Gaps = 3/99 (3%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVF--LINVKQENLENE 175
++ G E V +EV++++E+G A R A T MN +SSRSHSVF I++K+ ++ E
Sbjct: 193 VIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE 252
Query: 176 KKLS-GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSL 213
+ + GKL LVDLAGSE + ++GA EA NIN+SL
Sbjct: 253 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSL 291
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 64/99 (64%), Gaps = 3/99 (3%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVF--LINVKQENLENE 175
++ G E V +EV++++E+G A R A T MN +SSRSHSVF I++K+ ++ E
Sbjct: 194 VIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE 253
Query: 176 KKLS-GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSL 213
+ + GKL LVDLAGSE + ++GA EA NIN+SL
Sbjct: 254 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSL 292
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 4/89 (4%)
Query: 133 EVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLS----GKLYLVDLA 188
++ ++++ G R +A TNMNE SSRSH+VF I Q+ + E ++ K+ LVDLA
Sbjct: 191 DIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLA 250
Query: 189 GSEKVSKTGAEGTVLDEAKNINKSLSADG 217
GSE+ TGA+GT L E NINKSL+ G
Sbjct: 251 GSERADSTGAKGTRLKEGANINKSLTTLG 279
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 64/99 (64%), Gaps = 3/99 (3%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVF--LINVKQENLENE 175
++ G E V +EV++++E+G A R A T MN +SSRSHSVF I++K+ ++ E
Sbjct: 194 VIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE 253
Query: 176 KKLS-GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSL 213
+ + GKL LVDLAGSE + ++GA EA NIN+SL
Sbjct: 254 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSL 292
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 64/99 (64%), Gaps = 3/99 (3%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVF--LINVKQENLENE 175
++ G E V +EV++++E+G A R A T MN +SSRSHSVF I++K+ ++ E
Sbjct: 194 VIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE 253
Query: 176 KKLS-GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSL 213
+ + GKL LVDLAGSE + ++GA EA NIN+SL
Sbjct: 254 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSL 292
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 3/103 (2%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVF--LINVKQENLENE 175
++ G E V +EV++++E+G A R A T MN +SSRSHSVF I++K+ ++ E
Sbjct: 179 VIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE 238
Query: 176 KKLS-GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
+ + GKL LVDLAGSE + ++GA EA NIN+SL G
Sbjct: 239 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLG 281
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 64/99 (64%), Gaps = 3/99 (3%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVF--LINVKQENLENE 175
++ G E V +EV++++E+G A R A T MN +SSRSHSVF I++K+ ++ E
Sbjct: 196 VIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE 255
Query: 176 KKLS-GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSL 213
+ + GKL LVDLAGSE + ++GA EA NIN+SL
Sbjct: 256 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSL 294
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 4/89 (4%)
Query: 133 EVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLS----GKLYLVDLA 188
++ ++++ G R +A TNMNE SSRSH+VF I Q+ + E ++ K+ LVDLA
Sbjct: 191 DIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLA 250
Query: 189 GSEKVSKTGAEGTVLDEAKNINKSLSADG 217
GSE+ TGA+GT L E NINKSL+ G
Sbjct: 251 GSERADSTGAKGTRLKEGANINKSLTTLG 279
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 4/89 (4%)
Query: 133 EVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLS----GKLYLVDLA 188
++ ++++ G R +A TNMNE SSRSH+VF I Q+ + E ++ K+ LVDLA
Sbjct: 191 DIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLA 250
Query: 189 GSEKVSKTGAEGTVLDEAKNINKSLSADG 217
GSE+ TGA+GT L E NINKSL+ G
Sbjct: 251 GSERADSTGAKGTRLKEGANINKSLTTLG 279
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 72/126 (57%), Gaps = 4/126 (3%)
Query: 96 DRLRSDHQLKASTMCEHSLMHLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEH 155
D L +D K + + ++ G E V ++V++++E+GK R A T MN
Sbjct: 173 DLLSTDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQ 232
Query: 156 SSRSHSVF--LINVKQENLENEKKLS-GKLYLVDLAGSEKVSKTGAE-GTVLDEAKNINK 211
SSRSH+VF ++++++ +E E L GKL LVDLAGSE VSK G E G + E NIN+
Sbjct: 233 SSRSHTVFSIVVHIRENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQ 292
Query: 212 SLSADG 217
SL G
Sbjct: 293 SLLTLG 298
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 55/87 (63%)
Query: 131 PEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGS 190
PE+ ++ + R A T N+HSSRSHS+F+I+++ N ++ G L L+DLAGS
Sbjct: 561 PEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLTKESSYGTLNLIDLAGS 620
Query: 191 EKVSKTGAEGTVLDEAKNINKSLSADG 217
E+++ + AEG L E + INKSLS G
Sbjct: 621 ERLNNSRAEGDRLKETQAINKSLSCLG 647
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 53/85 (62%)
Query: 133 EVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEK 192
+V ++++ R A T NE SSRSHSVF++++ NL + GKL LVDLAGSE+
Sbjct: 194 QVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGETSQGKLNLVDLAGSER 253
Query: 193 VSKTGAEGTVLDEAKNINKSLSADG 217
++ + G L E +NINKSLS G
Sbjct: 254 INSSAVTGERLRETQNINKSLSCLG 278
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 75/167 (44%), Gaps = 21/167 (12%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEK- 176
+V G E V +EV ++E G A RH T++N SSRSH+VF + +KQ +
Sbjct: 173 VVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRL 232
Query: 177 -------KLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA-------------D 216
L K + VDLAGSE+V KTG+ G + E+ IN SL A
Sbjct: 233 PRPAPGQLLVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRR 292
Query: 217 GAGKLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEY 263
G+ + + R+ + K ++ C S SS +E + Y
Sbjct: 293 GSNIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNY 339
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 75/167 (44%), Gaps = 21/167 (12%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEK- 176
+V G E V +EV ++E G A RH T++N SSRSH+VF + ++Q +
Sbjct: 173 VVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRL 232
Query: 177 -------KLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA-------------D 216
L K + VDLAGSE+V KTG+ G L E+ IN SL A
Sbjct: 233 PRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRR 292
Query: 217 GAGKLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEY 263
G+ + + R+ + K ++ C S SS +E + Y
Sbjct: 293 GSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNY 339
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLE---N 174
+V G T EE+ +++ G NR T+MN SSRSH+VF I ++Q++ N
Sbjct: 187 VVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASIN 246
Query: 175 EKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
+ K+ L+DLAGSE+ S +GA+GT E NIN+SL A G
Sbjct: 247 QNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALG 289
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 57/88 (64%), Gaps = 3/88 (3%)
Query: 132 EEVFEVIEEGKAN--RHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAG 189
EE+ E+I + KAN R A T NEHSSRSHS+F+I++ N + G L LVDLAG
Sbjct: 245 EEMVEIILK-KANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAG 303
Query: 190 SEKVSKTGAEGTVLDEAKNINKSLSADG 217
SE+++ + G L E +NINKSLSA G
Sbjct: 304 SERINVSQVVGDRLRETQNINKSLSALG 331
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 16/157 (10%)
Query: 132 EEVFEVIEEGKAN--RHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAG 189
EE+ E+I + KAN R A T NEHSSRSHS+F+I++ N + G L LVDLAG
Sbjct: 200 EEMVEIILK-KANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAG 258
Query: 190 SEKVSKTGAEGTVLDEAKNINKSLSADG----------AGKLEEEFTVARL-YI--SKMK 236
SE+++ + G L E +NINKSLS G + K F ++L Y+ +
Sbjct: 259 SERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLT 318
Query: 237 SEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLL 273
+ K L+ S SS E ++ + ++ TRL+
Sbjct: 319 GDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLV 355
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 16/157 (10%)
Query: 132 EEVFEVIEEGKAN--RHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAG 189
EE+ E+I + KAN R A T NEHSSRSHS+F+I++ N + G L LVDLAG
Sbjct: 188 EEMVEIILK-KANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAG 246
Query: 190 SEKVSKTGAEGTVLDEAKNINKSLSADG----------AGKLEEEFTVARL-YI--SKMK 236
SE+++ + G L E +NINKSLS G + K F ++L Y+ +
Sbjct: 247 SERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLT 306
Query: 237 SEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLL 273
+ K L+ S SS E ++ + ++ TRL+
Sbjct: 307 GDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLV 343
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 4/90 (4%)
Query: 132 EEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQ--ENLENEKKL--SGKLYLVDL 187
EE+ + G +R +A T MN+ SSRSH+VF I +KQ +LE + S ++ LVDL
Sbjct: 241 EEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDL 300
Query: 188 AGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
AGSE+ T A G L E NINKSL+ G
Sbjct: 301 AGSERAKSTEATGQRLREGSNINKSLTTLG 330
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 57/105 (54%), Gaps = 9/105 (8%)
Query: 118 IVFPGATERFVGKPEEVFEVIE----EGKANRHIAVTNMNEHSSRSHSVFLINVKQ-ENL 172
I+ PG ++ KP F E NR + T +N+ SSRSH+V L+ V Q E L
Sbjct: 184 ILIPGLSQ----KPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERL 239
Query: 173 ENEKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
++ GKLYL+DLAGSE +TG +G L E+ IN SL G
Sbjct: 240 APFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLG 284
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 132 EEVFEVIEEGKAN--RHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAG 189
EE+ E+I + KAN R A T NEHSSRSHS+F+I++ N + G L LVDLAG
Sbjct: 189 EEMVEIILK-KANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAG 247
Query: 190 SEKVSKTGAEGTVLDEAKNINKSLSADG----------AGKLEEEFTVARL-YI--SKMK 236
S +++ + G L E +NINKSLS G + K F ++L Y+ +
Sbjct: 248 SARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLT 307
Query: 237 SEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLL 273
+ K L+ S SS E ++ + ++ TRL+
Sbjct: 308 GDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLV 344
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 132 EEVFEVIEEGKAN--RHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAG 189
EE+ E+I + KAN R A T NEHSS SHS+F+I++ N + G L LVDLAG
Sbjct: 189 EEMVEIILK-KANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYGTLNLVDLAG 247
Query: 190 SEKVSKTGAEGTVLDEAKNINKSLSADG----------AGKLEEEFTVARL-YI--SKMK 236
SE+++ + G L E +NINKSLS G + K F ++L Y+ +
Sbjct: 248 SERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLT 307
Query: 237 SEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLL 273
+ K L+ S SS E ++ + ++ TRL+
Sbjct: 308 GDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLV 344
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 132 EEVFEVIEEGKAN--RHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAG 189
EE+ E+I + KAN R A T NEHSSRSHS+F+I++ N + G L LVDLAG
Sbjct: 189 EEMVEIILK-KANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAG 247
Query: 190 SEKVSKTGAEGTVLDEAKNINKSLSADG----------AGKLEEEFTVARL-YI--SKMK 236
SE+++ + G L E +NI KSLS G + K F ++L Y+ +
Sbjct: 248 SERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLT 307
Query: 237 SEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLL 273
+ K L+ S SS E ++ + ++ TRL+
Sbjct: 308 GDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLV 344
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 56/96 (58%), Gaps = 7/96 (7%)
Query: 124 TERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQ------ENLENEKK 177
TE V E + I +G+ +RH T MN+ SSRSH++F + ++ N E K
Sbjct: 167 TEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVK 226
Query: 178 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSL 213
+S L LVDLAGSE+ ++TGA G L E NIN+SL
Sbjct: 227 VS-HLNLVDLAGSERAAQTGAAGVRLKEGCNINRSL 261
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 55/86 (63%)
Query: 132 EEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSE 191
+ V +V++ R A T NEHSSRSHS+F+I+++ +N +K G L LVDLAGSE
Sbjct: 214 DTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLEGKNEGTGEKSQGILNLVDLAGSE 273
Query: 192 KVSKTGAEGTVLDEAKNINKSLSADG 217
+++ + G L E ++INKSLS G
Sbjct: 274 RLNSSMVVGERLRETQSINKSLSCLG 299
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Query: 133 EVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEK 192
++ ++E G NR + TNMN +SSRSH++ I+VK K ++ +VDLAGSE
Sbjct: 194 DLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVK------SKTHHSRMNIVDLAGSEG 247
Query: 193 VSKTGAEGTVLDEAKNINKSL 213
V +TG EG E NIN L
Sbjct: 248 VRRTGHEGVARQEGVNINLGL 268
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Query: 133 EVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEK 192
++ ++E G NR + TNMN +SSRSH++ I+VK K ++ +VDLAGSE
Sbjct: 194 DLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVK------SKTHHSRMNIVDLAGSEG 247
Query: 193 VSKTGAEGTVLDEAKNINKSL 213
V +TG EG E NIN L
Sbjct: 248 VRRTGHEGVARQEGVNINLGL 268
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 6/95 (6%)
Query: 122 GATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGK 181
G ER V E+V ++I+ G + R T+ N HSSRSH+VF I ++++ KL GK
Sbjct: 265 GLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKG-----KLHGK 319
Query: 182 LYLVDLAGSEKVSKT-GAEGTVLDEAKNINKSLSA 215
L+DLAG+E+ + T A+ E INKSL A
Sbjct: 320 FSLIDLAGNERGADTSSADRQTRLEGAEINKSLLA 354
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 132 EEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSE 191
+EV ++ + NR +A T NE SSRSHSVF + + E+ + L LVDLAGSE
Sbjct: 224 KEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQISGEHSSRGLQCGAPLSLVDLAGSE 283
Query: 192 KVSKTGAEGTV----LDEAKNINKSLSADG 217
++ A G L E + IN SLS G
Sbjct: 284 RLDPGLALGPGERERLRETQAINSSLSTLG 313
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKK 177
I TE V P + ++ K NR A T NE SSRSH+V + + + E ++
Sbjct: 221 IYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEI 280
Query: 178 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLS 214
G + LVDLAGSE KT T + E KNIN+SLS
Sbjct: 281 SVGSINLVDLAGSES-PKT---STRMTETKNINRSLS 313
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKK 177
I TE V P + ++ K NR A T NE SSRSH+V + + + E ++
Sbjct: 232 IYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEI 291
Query: 178 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLS 214
G + LVDLAGSE + T + E KNIN+SLS
Sbjct: 292 SVGSINLVDLAGSE----SPKTSTRMTETKNINRSLS 324
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKK 177
I TE V P + ++ K NR A T NE SSRSH+V + + + E ++
Sbjct: 218 IYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEI 277
Query: 178 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLS 214
G + LVDLAGSE KT T + E KNIN+SLS
Sbjct: 278 SVGSINLVDLAGSES-PKT---STRMTETKNINRSLS 310
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKK 177
I TE V P + ++ K NR A T NE SSRSH+V + + + E ++
Sbjct: 224 IYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEI 283
Query: 178 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLS 214
G + LVDLAGSE KT T + E KNIN+SLS
Sbjct: 284 SVGSINLVDLAGSES-PKT---STRMTETKNINRSLS 316
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 15 DSIRVVCRFRPLNHSEEK-------AGSKFIVKFPXXXXXXXXXXXXKFYLFDKVFKPNA 67
D+IRV CR RP SEE + V+ + + FD+VF P +
Sbjct: 59 DNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 118
Query: 68 TQEKVYDEAAKSIVS 82
+Q +++ + I S
Sbjct: 119 SQSDIFEMVSPLIQS 133
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 122 GATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGK 181
G E V ++V ++I+ G A R T N +SSRSH+ F I ++ + ++ GK
Sbjct: 227 GLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKG-----RMHGK 281
Query: 182 LYLVDLAGSEKVSKT-GAEGTVLDEAKNINKSLSA 215
LVDLAG+E+ + T A+ E INKSL A
Sbjct: 282 FSLVDLAGNERGADTSSADRQTRMEGAEINKSLLA 316
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 132 EEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVK--QENLENEKKLS-GKLYLVDLA 188
+E+ V+ G R + T+MNE SSRSH++F+I V+ + + + + GKL LVDLA
Sbjct: 201 KEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDHIRVGKLNLVDLA 260
Query: 189 GSEKVSKTG 197
GSE+ +K G
Sbjct: 261 GSERQNKAG 269
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 12 AAEDSIRVVCRFRPLNHSEEKAGSKFIV-------KFPXXXXXXXXXXXXKFYLFDKVFK 64
A ++++VV R RPL+ EE AG + I+ + K + FD V+
Sbjct: 18 GASEALKVVARCRPLSRKEEAAGHEQILTMDVKLGQVTLRNPRAAPGELPKTFTFDAVYD 77
Query: 65 PNATQEKVYDEAAKSIV 81
++ Q +YDE + ++
Sbjct: 78 ASSKQADLYDETVRPLI 94
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKK 177
I TE V P + ++ K NR A T NE SSRSH+V + + + E ++
Sbjct: 221 IYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEI 280
Query: 178 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLS 214
G + LVDLAGSE KT T + E KNI +SLS
Sbjct: 281 SVGSINLVDLAGSES-PKT---STRMTETKNIKRSLS 313
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 122 GATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGK 181
G E V ++V ++I G A R T N +SSRSH+ F Q L + +L GK
Sbjct: 247 GLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACF-----QILLRTKGRLHGK 301
Query: 182 LYLVDLAGSEKVSKT-GAEGTVLDEAKNINKSLSA 215
LVDLAG+E+ + T A+ E INKSL A
Sbjct: 302 FSLVDLAGNERGADTSSADRQTRMEGAEINKSLLA 336
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 122 GATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGK 181
G E V ++V ++I G A R T N +SSRSH+ F Q L + +L GK
Sbjct: 175 GLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACF-----QILLRTKGRLHGK 229
Query: 182 LYLVDLAGSEKVSKT-GAEGTVLDEAKNINKSLSA 215
LVDLAG+E+ + T A+ E INKSL A
Sbjct: 230 FSLVDLAGNERGADTSSADRQTRMEGAEINKSLLA 264
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 9/93 (9%)
Query: 126 RFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLS-GKLYL 184
R + K E + ++I+ G R I V + N+ SSRSH++ I++K N K S GK+
Sbjct: 180 RVLTKEELILKMID-GVLLRKIGVNSQNDESSRSHAILNIDLKDIN----KNTSLGKIAF 234
Query: 185 VDLAGSEKVSKTGAEG--TVLDEAKNINKSLSA 215
+DLAGSE+ + T ++ T D A NIN+SL A
Sbjct: 235 IDLAGSERGADTVSQNKQTQTDGA-NINRSLLA 266
>pdb|2GQF|A Chain A, Crystal Structure Of Flavoprotein Hi0933 From Haemophilus
Influenzae Rd
Length = 401
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 187 LAGSEKVSKTGAEGTVLDEAKNINKSLSADGAGKLEE---EFTVARLYISKMKSEVKNLV 243
L + +++K G TV D K I + + G G E T A Y+S+ VK+ +
Sbjct: 17 LFCAAQLAKLGKSVTVFDNGKKIGRKILXSGGGFCNFTNLEVTPAH-YLSQNPHFVKSAL 75
Query: 244 ARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLK 288
AR T+ + + +EKELG+ L +E EQ + LK
Sbjct: 76 ARYTNWDFISLVAEQGITYHEKELGQ----LFCDEGAEQIVEXLK 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.127 0.340
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,235,306
Number of Sequences: 62578
Number of extensions: 636862
Number of successful extensions: 2062
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1866
Number of HSP's gapped (non-prelim): 182
length of query: 720
length of database: 14,973,337
effective HSP length: 106
effective length of query: 614
effective length of database: 8,340,069
effective search space: 5120802366
effective search space used: 5120802366
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)