Query psy5718
Match_columns 720
No_of_seqs 366 out of 2010
Neff 6.1
Searched_HMMs 46136
Date Sat Aug 17 00:50:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5718.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5718hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0240|consensus 100.0 1.6E-89 3.5E-94 748.3 32.4 461 11-527 3-554 (607)
2 KOG0243|consensus 100.0 3.1E-66 6.8E-71 600.7 46.1 439 12-474 46-579 (1041)
3 KOG4280|consensus 100.0 1.2E-61 2.6E-66 542.4 15.8 288 14-301 4-368 (574)
4 KOG0245|consensus 100.0 2.5E-60 5.5E-65 541.8 17.4 286 14-301 3-380 (1221)
5 PLN03188 kinesin-12 family pro 100.0 2.5E-57 5.4E-62 530.8 22.9 283 14-302 97-466 (1320)
6 cd01370 KISc_KIP3_like Kinesin 100.0 2.8E-55 6E-60 475.9 17.9 252 16-270 1-338 (338)
7 KOG0242|consensus 100.0 1.4E-55 3.1E-60 510.1 14.7 287 13-301 4-364 (675)
8 cd01373 KISc_KLP2_like Kinesin 100.0 1.1E-54 2.5E-59 471.0 17.8 254 15-270 1-337 (337)
9 KOG0241|consensus 100.0 4.3E-53 9.3E-58 474.2 20.1 288 14-301 3-383 (1714)
10 cd01369 KISc_KHC_KIF5 Kinesin 100.0 3.6E-53 7.8E-58 457.1 18.8 253 15-270 2-325 (325)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 3.5E-53 7.5E-58 462.6 18.4 261 15-277 1-356 (356)
12 cd01364 KISc_BimC_Eg5 Kinesin 100.0 6.6E-53 1.4E-57 459.8 18.3 265 14-278 1-351 (352)
13 cd01368 KISc_KIF23_like Kinesi 100.0 7.4E-53 1.6E-57 458.1 17.9 251 15-268 1-345 (345)
14 cd01367 KISc_KIF2_like Kinesin 100.0 3.1E-52 6.8E-57 449.3 18.2 250 15-268 1-322 (322)
15 cd01371 KISc_KIF3 Kinesin moto 100.0 5.1E-52 1.1E-56 449.7 18.6 255 15-270 1-333 (333)
16 cd01372 KISc_KIF4 Kinesin moto 100.0 6.1E-52 1.3E-56 450.2 18.4 255 15-271 1-341 (341)
17 cd01374 KISc_CENP_E Kinesin mo 100.0 4.1E-51 8.9E-56 440.5 18.1 249 16-270 1-321 (321)
18 cd01376 KISc_KID_like Kinesin 100.0 5.4E-51 1.2E-55 439.2 18.2 249 16-268 1-319 (319)
19 cd01366 KISc_C_terminal Kinesi 100.0 2.4E-50 5.3E-55 435.7 19.5 257 14-273 1-329 (329)
20 KOG0239|consensus 100.0 3.6E-50 7.7E-55 463.7 14.5 262 13-276 312-646 (670)
21 cd01375 KISc_KIF9_like Kinesin 100.0 1.3E-49 2.8E-54 431.0 17.6 246 16-268 1-334 (334)
22 smart00129 KISc Kinesin motor, 100.0 2.3E-49 5E-54 428.9 18.8 261 16-277 1-335 (335)
23 KOG0247|consensus 100.0 8.3E-48 1.8E-52 430.0 26.9 265 8-278 24-444 (809)
24 KOG0244|consensus 100.0 2.2E-49 4.9E-54 454.1 12.5 276 23-301 1-349 (913)
25 cd00106 KISc Kinesin motor dom 100.0 3.6E-47 7.8E-52 410.3 18.7 249 16-268 1-328 (328)
26 KOG0246|consensus 100.0 2.4E-46 5.1E-51 408.4 15.1 260 9-274 202-545 (676)
27 PF00225 Kinesin: Kinesin moto 100.0 1.2E-46 2.6E-51 407.4 11.4 249 22-270 1-335 (335)
28 COG5059 KIP1 Kinesin-like prot 100.0 9.5E-40 2.1E-44 374.8 27.6 280 14-300 21-368 (568)
29 cd01363 Motor_domain Myosin an 100.0 6.4E-34 1.4E-38 284.2 6.8 145 72-249 8-186 (186)
30 PF07888 CALCOCO1: Calcium bin 97.6 0.076 1.6E-06 61.3 29.0 61 336-413 136-196 (546)
31 PRK02224 chromosome segregatio 97.5 0.25 5.5E-06 60.9 35.5 7 234-240 139-145 (880)
32 KOG0161|consensus 97.5 0.18 4E-06 65.8 33.8 106 396-501 1007-1115(1930)
33 PRK02224 chromosome segregatio 97.5 0.47 1E-05 58.6 36.7 6 71-76 38-43 (880)
34 KOG0161|consensus 97.3 0.58 1.2E-05 61.4 36.1 81 399-479 1034-1114(1930)
35 TIGR02168 SMC_prok_B chromosom 97.2 0.34 7.3E-06 61.0 32.5 77 422-498 276-352 (1179)
36 TIGR00606 rad50 rad50. This fa 97.2 0.81 1.7E-05 59.2 35.8 25 543-567 935-959 (1311)
37 COG5059 KIP1 Kinesin-like prot 97.2 3.1E-05 6.8E-10 90.3 -3.6 76 140-219 486-561 (568)
38 PRK03918 chromosome segregatio 97.1 1.2 2.6E-05 54.9 39.1 22 487-508 402-423 (880)
39 COG1196 Smc Chromosome segrega 97.1 0.57 1.2E-05 59.8 33.1 92 420-511 828-919 (1163)
40 PRK11637 AmiB activator; Provi 97.1 0.036 7.8E-07 62.9 19.6 48 467-514 87-134 (428)
41 TIGR02169 SMC_prok_A chromosom 97.1 0.48 1E-05 59.8 31.5 10 546-555 559-568 (1164)
42 PRK03918 chromosome segregatio 97.1 0.51 1.1E-05 58.1 31.1 20 619-638 456-475 (880)
43 TIGR02169 SMC_prok_A chromosom 97.1 0.54 1.2E-05 59.4 31.8 6 62-67 28-33 (1164)
44 COG1196 Smc Chromosome segrega 97.1 0.19 4.1E-06 64.1 27.7 11 160-170 77-87 (1163)
45 KOG0977|consensus 97.0 0.22 4.7E-06 57.7 24.9 250 382-659 100-370 (546)
46 KOG0996|consensus 96.9 0.92 2E-05 56.1 30.3 79 436-515 530-608 (1293)
47 PF10174 Cast: RIM-binding pro 96.8 2.1 4.5E-05 52.2 31.6 96 547-643 292-399 (775)
48 PF00038 Filament: Intermediat 96.6 0.86 1.9E-05 49.2 24.7 89 410-498 213-305 (312)
49 PF00038 Filament: Intermediat 96.6 1.2 2.7E-05 48.0 25.7 88 461-561 201-288 (312)
50 TIGR00606 rad50 rad50. This fa 96.5 4.5 9.7E-05 52.5 38.7 78 447-524 880-960 (1311)
51 KOG4674|consensus 96.5 3.7 8E-05 53.7 32.7 107 570-676 324-461 (1822)
52 PF05667 DUF812: Protein of un 96.5 0.14 3E-06 60.4 19.2 165 391-555 359-544 (594)
53 PRK09039 hypothetical protein; 96.5 0.23 5E-06 54.9 19.7 109 412-520 80-195 (343)
54 KOG0250|consensus 96.4 0.76 1.7E-05 56.6 24.9 106 412-518 357-463 (1074)
55 PF04849 HAP1_N: HAP1 N-termin 96.3 1.1 2.4E-05 48.5 22.7 107 255-366 72-183 (306)
56 PRK04778 septation ring format 96.2 4 8.7E-05 48.2 30.6 168 380-556 285-462 (569)
57 KOG1029|consensus 96.1 2 4.4E-05 51.1 25.1 28 541-568 471-498 (1118)
58 KOG0977|consensus 96.1 2.4 5.1E-05 49.4 25.7 140 387-526 161-346 (546)
59 KOG0933|consensus 96.0 2.1 4.6E-05 52.4 25.4 123 383-509 810-932 (1174)
60 PF05622 HOOK: HOOK protein; 96.0 0.0018 3.8E-08 78.0 0.0 122 547-676 457-597 (713)
61 PF00261 Tropomyosin: Tropomyo 96.0 2.6 5.6E-05 44.1 28.7 151 369-519 83-236 (237)
62 PRK11637 AmiB activator; Provi 95.9 4.2 9.2E-05 46.2 30.7 22 336-357 110-131 (428)
63 PF05384 DegS: Sensor protein 95.9 0.91 2E-05 44.8 18.3 130 397-526 4-151 (159)
64 PF13851 GAS: Growth-arrest sp 95.9 2.5 5.4E-05 43.3 23.8 87 381-467 48-140 (201)
65 KOG0976|consensus 95.8 0.95 2.1E-05 53.8 20.8 98 422-519 115-212 (1265)
66 KOG0996|consensus 95.8 6 0.00013 49.4 28.2 65 450-514 530-594 (1293)
67 PF10174 Cast: RIM-binding pro 95.8 6.7 0.00015 47.9 34.4 137 415-569 438-582 (775)
68 KOG0971|consensus 95.8 2 4.3E-05 51.9 23.4 198 285-527 227-447 (1243)
69 PF09726 Macoilin: Transmembra 95.7 4.6 0.0001 48.8 27.1 94 418-511 543-650 (697)
70 PF15070 GOLGA2L5: Putative go 95.7 1.2 2.5E-05 53.0 21.7 42 467-508 85-126 (617)
71 smart00787 Spc7 Spc7 kinetocho 95.6 4.3 9.4E-05 44.4 26.2 121 397-518 163-287 (312)
72 PF15070 GOLGA2L5: Putative go 95.5 7.6 0.00016 46.3 29.3 30 334-363 85-114 (617)
73 PF08317 Spc7: Spc7 kinetochor 95.4 5.2 0.00011 43.9 26.5 89 412-500 176-268 (325)
74 PF12128 DUF3584: Protein of u 95.4 12 0.00027 48.1 33.4 66 447-512 468-533 (1201)
75 KOG0612|consensus 95.4 2.2 4.8E-05 53.2 22.5 22 672-693 789-810 (1317)
76 PRK04863 mukB cell division pr 95.4 14 0.00031 48.4 34.6 41 667-707 1230-1270(1486)
77 PRK04863 mukB cell division pr 95.3 5.9 0.00013 51.8 27.3 8 54-61 20-27 (1486)
78 KOG0250|consensus 95.1 13 0.00027 46.4 29.1 82 416-497 347-429 (1074)
79 PF07888 CALCOCO1: Calcium bin 95.0 9.6 0.00021 44.5 31.1 13 180-192 90-102 (546)
80 TIGR03185 DNA_S_dndD DNA sulfu 95.0 1.9 4.2E-05 51.6 20.8 38 415-452 218-255 (650)
81 PF05701 WEMBL: Weak chloropla 94.9 10 0.00022 44.4 36.8 32 538-569 284-315 (522)
82 PF08317 Spc7: Spc7 kinetochor 94.9 3 6.6E-05 45.7 20.3 110 399-508 170-283 (325)
83 KOG4643|consensus 94.8 14 0.00031 45.5 27.8 101 391-492 498-601 (1195)
84 PRK10884 SH3 domain-containing 94.5 0.48 1E-05 48.7 12.1 44 456-499 126-169 (206)
85 PF12718 Tropomyosin_1: Tropom 94.4 4.9 0.00011 39.0 18.3 96 412-511 27-122 (143)
86 KOG0933|consensus 94.3 18 0.0004 44.7 32.6 143 413-565 251-422 (1174)
87 KOG0980|consensus 94.3 17 0.00038 44.3 28.0 23 279-301 330-352 (980)
88 PHA02562 46 endonuclease subun 94.3 14 0.0003 43.1 26.2 22 334-355 260-281 (562)
89 PF10498 IFT57: Intra-flagella 94.2 2 4.2E-05 47.9 16.8 112 412-526 233-353 (359)
90 KOG0976|consensus 94.0 18 0.0004 43.6 31.0 59 424-482 180-238 (1265)
91 PF06785 UPF0242: Uncharacteri 93.9 8 0.00017 42.2 19.8 167 385-571 89-263 (401)
92 COG1340 Uncharacterized archae 93.9 11 0.00025 40.6 29.4 85 421-505 173-257 (294)
93 KOG0994|consensus 93.8 12 0.00025 46.9 23.0 71 412-482 1674-1744(1758)
94 PF04849 HAP1_N: HAP1 N-termin 93.8 12 0.00026 40.7 25.2 121 376-513 165-292 (306)
95 PHA02562 46 endonuclease subun 93.7 18 0.00038 42.3 30.6 17 209-225 123-140 (562)
96 PRK01156 chromosome segregatio 93.7 25 0.00054 43.8 38.8 33 423-455 412-444 (895)
97 KOG4674|consensus 93.6 34 0.00074 45.3 36.3 27 541-567 857-883 (1822)
98 KOG0994|consensus 93.6 26 0.00057 44.0 27.9 66 412-477 1583-1655(1758)
99 KOG4302|consensus 93.6 21 0.00046 42.8 25.9 132 438-569 100-253 (660)
100 PF08614 ATG16: Autophagy prot 93.5 1 2.2E-05 45.7 12.2 38 463-500 138-175 (194)
101 COG5185 HEC1 Protein involved 93.4 18 0.00038 41.3 22.2 39 479-517 378-416 (622)
102 COG1579 Zn-ribbon protein, pos 93.4 12 0.00026 39.4 21.0 127 384-520 48-179 (239)
103 KOG0971|consensus 93.3 26 0.00057 43.0 27.5 37 396-432 369-408 (1243)
104 smart00787 Spc7 Spc7 kinetocho 93.2 6.5 0.00014 43.1 18.6 87 408-501 167-257 (312)
105 PF12325 TMF_TATA_bd: TATA ele 93.2 3.4 7.5E-05 38.9 14.2 98 383-502 18-115 (120)
106 KOG4360|consensus 93.0 9.7 0.00021 43.7 19.6 84 413-496 219-302 (596)
107 PF05667 DUF812: Protein of un 92.9 23 0.00049 42.3 23.7 86 391-476 397-482 (594)
108 KOG0018|consensus 92.9 10 0.00022 47.2 20.9 173 396-591 653-826 (1141)
109 KOG0288|consensus 92.9 5.5 0.00012 44.6 17.2 113 392-518 17-137 (459)
110 PF12128 DUF3584: Protein of u 92.9 38 0.00082 43.8 33.4 61 460-520 821-881 (1201)
111 PF10186 Atg14: UV radiation r 92.8 15 0.00032 39.0 23.1 128 396-523 28-159 (302)
112 KOG0964|consensus 92.5 34 0.00074 42.4 29.2 138 374-511 335-502 (1200)
113 PF05701 WEMBL: Weak chloropla 92.3 28 0.00061 40.8 29.1 134 374-508 197-334 (522)
114 PF04111 APG6: Autophagy prote 92.1 2.5 5.4E-05 46.3 13.5 21 618-638 236-256 (314)
115 KOG0995|consensus 91.9 31 0.00067 40.4 25.5 184 387-591 265-451 (581)
116 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.9 12 0.00026 35.6 17.6 98 423-520 20-117 (132)
117 PF10168 Nup88: Nuclear pore c 91.8 11 0.00024 45.8 19.8 14 499-512 683-696 (717)
118 KOG4643|consensus 91.7 43 0.00093 41.7 36.4 29 243-271 54-82 (1195)
119 COG2433 Uncharacterized conser 91.5 2.8 6E-05 49.0 13.4 81 419-499 428-511 (652)
120 PF10473 CENP-F_leu_zip: Leuci 91.5 14 0.00031 35.8 18.5 86 409-494 20-105 (140)
121 PF04156 IncA: IncA protein; 91.5 8 0.00017 38.7 15.6 57 441-497 123-179 (191)
122 COG4942 Membrane-bound metallo 91.3 30 0.00066 39.3 26.0 31 283-313 60-90 (420)
123 PF05010 TACC: Transforming ac 91.1 20 0.00044 36.9 21.6 155 390-567 32-186 (207)
124 PF15397 DUF4618: Domain of un 91.1 24 0.00052 37.6 21.1 98 375-478 35-136 (258)
125 PF15619 Lebercilin: Ciliary p 91.0 20 0.00044 36.6 21.9 40 422-461 120-159 (194)
126 PF09789 DUF2353: Uncharacteri 90.9 28 0.00061 38.2 22.3 69 464-541 128-196 (319)
127 PF06005 DUF904: Protein of un 90.7 3.8 8.1E-05 35.2 10.4 65 449-513 5-69 (72)
128 PF04156 IncA: IncA protein; 90.7 12 0.00026 37.4 16.1 25 429-453 125-149 (191)
129 KOG0964|consensus 90.7 24 0.00053 43.6 20.5 138 424-569 675-812 (1200)
130 KOG4593|consensus 90.7 44 0.00096 40.0 29.6 55 450-504 239-296 (716)
131 KOG0980|consensus 90.7 50 0.0011 40.6 23.8 59 433-491 423-481 (980)
132 PF06160 EzrA: Septation ring 90.4 44 0.00095 39.6 32.4 26 472-497 309-334 (560)
133 PRK12704 phosphodiesterase; Pr 90.4 31 0.00068 40.5 21.1 6 522-527 224-229 (520)
134 PRK09039 hypothetical protein; 90.4 28 0.0006 38.6 19.8 63 412-474 122-184 (343)
135 PF06160 EzrA: Septation ring 90.2 46 0.00099 39.4 29.2 138 414-555 314-457 (560)
136 KOG0946|consensus 90.1 54 0.0012 40.0 23.8 123 381-507 650-775 (970)
137 PF09726 Macoilin: Transmembra 90.0 54 0.0012 39.9 26.5 31 282-316 418-448 (697)
138 PF10186 Atg14: UV radiation r 89.9 29 0.00064 36.7 20.3 87 421-514 71-157 (302)
139 PF05483 SCP-1: Synaptonemal c 89.7 53 0.0011 39.4 26.8 172 442-638 588-762 (786)
140 KOG1853|consensus 89.3 32 0.0007 36.3 19.6 30 422-451 135-164 (333)
141 PF00769 ERM: Ezrin/radixin/mo 89.2 27 0.00059 36.9 17.8 50 462-511 82-131 (246)
142 KOG0946|consensus 88.8 39 0.00085 41.1 20.0 70 450-520 808-877 (970)
143 TIGR03319 YmdA_YtgF conserved 88.7 49 0.0011 38.8 21.0 8 521-528 217-224 (514)
144 PF08614 ATG16: Autophagy prot 88.7 3.4 7.4E-05 41.9 10.2 87 425-511 107-193 (194)
145 KOG1937|consensus 88.6 40 0.00087 38.4 18.9 142 407-548 280-434 (521)
146 PRK04778 septation ring format 88.5 60 0.0013 38.5 29.7 14 546-559 415-428 (569)
147 PF12325 TMF_TATA_bd: TATA ele 88.3 23 0.0005 33.5 15.1 46 434-479 68-113 (120)
148 COG1579 Zn-ribbon protein, pos 88.2 38 0.00082 35.8 22.4 44 461-504 95-138 (239)
149 KOG0995|consensus 88.2 61 0.0013 38.1 35.7 23 616-638 536-558 (581)
150 KOG2129|consensus 88.1 3.8 8.2E-05 45.7 10.6 93 539-638 153-276 (552)
151 KOG0612|consensus 87.6 94 0.002 39.7 27.5 67 456-522 571-637 (1317)
152 PF07926 TPR_MLP1_2: TPR/MLP1/ 87.5 27 0.00058 33.3 16.1 63 444-509 55-117 (132)
153 PF12718 Tropomyosin_1: Tropom 87.2 30 0.00065 33.6 16.5 75 390-464 37-117 (143)
154 PF12072 DUF3552: Domain of un 87.1 36 0.00079 34.7 16.7 74 403-476 61-134 (201)
155 TIGR01843 type_I_hlyD type I s 86.4 59 0.0013 36.1 20.1 19 283-301 82-100 (423)
156 PF04111 APG6: Autophagy prote 86.3 13 0.00027 40.8 13.6 19 390-408 18-36 (314)
157 PRK00106 hypothetical protein; 86.2 78 0.0017 37.3 21.1 29 450-478 127-155 (535)
158 KOG4438|consensus 85.9 52 0.0011 37.3 17.9 96 469-569 180-275 (446)
159 PF10168 Nup88: Nuclear pore c 85.6 50 0.0011 40.3 19.3 31 474-504 637-667 (717)
160 COG4372 Uncharacterized protei 85.5 68 0.0015 36.0 26.7 75 424-498 207-281 (499)
161 PF11559 ADIP: Afadin- and alp 85.4 37 0.0008 32.8 15.4 94 382-478 53-149 (151)
162 PRK10884 SH3 domain-containing 85.4 11 0.00024 38.9 11.8 14 389-402 101-114 (206)
163 PRK12704 phosphodiesterase; Pr 85.3 33 0.00071 40.3 17.1 19 673-691 355-373 (520)
164 PRK11281 hypothetical protein; 85.2 1.3E+02 0.0027 38.8 32.6 35 464-498 280-314 (1113)
165 PF04912 Dynamitin: Dynamitin 85.1 37 0.00081 38.2 17.0 24 500-527 205-228 (388)
166 PF05010 TACC: Transforming ac 85.1 50 0.0011 34.1 24.3 105 412-517 89-201 (207)
167 TIGR01843 type_I_hlyD type I s 85.0 69 0.0015 35.6 19.3 16 286-301 78-93 (423)
168 PF05622 HOOK: HOOK protein; 84.7 0.83 1.8E-05 55.3 3.9 77 418-494 272-357 (713)
169 KOG0249|consensus 84.7 60 0.0013 39.1 18.4 45 438-482 213-257 (916)
170 PF10498 IFT57: Intra-flagella 84.7 31 0.00068 38.6 15.8 91 419-509 251-347 (359)
171 PF10146 zf-C4H2: Zinc finger- 84.5 20 0.00043 37.6 13.4 69 381-449 32-103 (230)
172 PRK00106 hypothetical protein; 84.5 74 0.0016 37.5 19.3 7 685-691 382-388 (535)
173 COG0419 SbcC ATPase involved i 84.4 1.2E+02 0.0027 38.0 35.9 19 287-305 230-248 (908)
174 TIGR02680 conserved hypothetic 84.1 1.5E+02 0.0033 39.0 24.6 111 413-527 283-401 (1353)
175 PF06637 PV-1: PV-1 protein (P 83.7 32 0.0007 38.3 14.8 96 386-487 283-388 (442)
176 COG1382 GimC Prefoldin, chaper 83.5 22 0.00048 33.5 11.8 35 422-456 15-49 (119)
177 KOG0804|consensus 83.3 64 0.0014 36.8 17.2 27 472-498 424-450 (493)
178 TIGR03319 YmdA_YtgF conserved 83.3 49 0.0011 38.8 17.4 10 682-691 358-367 (514)
179 TIGR03185 DNA_S_dndD DNA sulfu 82.9 1.2E+02 0.0025 36.6 30.2 17 285-301 219-235 (650)
180 PF13851 GAS: Growth-arrest sp 82.1 64 0.0014 33.1 20.7 77 422-498 81-158 (201)
181 COG4477 EzrA Negative regulato 81.8 1.1E+02 0.0025 35.7 24.8 51 396-446 275-335 (570)
182 PF09738 DUF2051: Double stran 81.5 10 0.00022 41.3 10.2 39 385-423 95-136 (302)
183 PF06005 DUF904: Protein of un 81.2 35 0.00075 29.4 11.5 63 385-451 8-70 (72)
184 KOG0243|consensus 81.1 1.5E+02 0.0032 37.6 20.7 96 430-525 479-588 (1041)
185 PF06818 Fez1: Fez1; InterPro 81.0 30 0.00065 35.5 12.7 99 398-500 6-104 (202)
186 KOG0963|consensus 80.9 1.3E+02 0.0028 35.8 22.1 30 539-568 387-416 (629)
187 PF10211 Ax_dynein_light: Axon 80.9 62 0.0013 32.9 15.1 31 424-454 124-154 (189)
188 PF10481 CENP-F_N: Cenp-F N-te 80.7 83 0.0018 33.8 16.0 112 328-443 10-132 (307)
189 PF13863 DUF4200: Domain of un 80.6 49 0.0011 30.7 15.8 38 475-513 80-117 (126)
190 PF00261 Tropomyosin: Tropomyo 80.5 78 0.0017 33.1 28.6 28 468-495 175-202 (237)
191 PF14662 CCDC155: Coiled-coil 80.3 72 0.0016 32.6 22.5 68 386-453 58-128 (193)
192 TIGR00634 recN DNA repair prot 80.2 1.3E+02 0.0029 35.5 24.0 46 470-518 347-392 (563)
193 PF09730 BicD: Microtubule-ass 80.2 1.5E+02 0.0033 36.2 22.4 49 450-498 407-455 (717)
194 TIGR02680 conserved hypothetic 80.2 2.1E+02 0.0045 37.8 29.7 26 626-651 1121-1146(1353)
195 KOG4302|consensus 80.1 1.3E+02 0.0029 36.2 19.4 34 420-453 160-193 (660)
196 COG4372 Uncharacterized protei 79.9 1.1E+02 0.0024 34.4 17.2 74 424-497 99-172 (499)
197 KOG0979|consensus 79.7 1.8E+02 0.0038 36.7 24.1 93 416-508 244-343 (1072)
198 COG0419 SbcC ATPase involved i 79.6 1.8E+02 0.0038 36.6 34.7 23 668-690 660-682 (908)
199 cd07651 F-BAR_PombeCdc15_like 79.2 84 0.0018 32.7 23.3 93 425-517 98-198 (236)
200 PF11932 DUF3450: Protein of u 79.2 47 0.001 35.0 14.2 43 466-508 88-135 (251)
201 KOG0249|consensus 79.1 1.1E+02 0.0023 37.1 17.7 68 443-514 208-275 (916)
202 PF15254 CCDC14: Coiled-coil d 78.9 1.7E+02 0.0036 35.9 22.1 18 284-301 389-406 (861)
203 KOG1962|consensus 78.3 33 0.00072 35.6 12.1 61 425-485 149-209 (216)
204 PF15619 Lebercilin: Ciliary p 77.3 90 0.002 31.9 23.6 30 334-363 10-39 (194)
205 PF06008 Laminin_I: Laminin Do 77.0 1.1E+02 0.0023 32.6 30.0 99 412-510 152-257 (264)
206 KOG0804|consensus 76.8 1.3E+02 0.0028 34.6 16.9 56 422-477 356-411 (493)
207 PF11932 DUF3450: Protein of u 76.5 1.1E+02 0.0023 32.3 16.9 41 421-461 57-97 (251)
208 COG2433 Uncharacterized conser 76.0 40 0.00088 39.8 13.2 52 415-466 417-468 (652)
209 PF01920 Prefoldin_2: Prefoldi 75.8 58 0.0013 29.0 12.6 79 420-498 5-98 (106)
210 PF01576 Myosin_tail_1: Myosin 75.4 0.9 2E-05 56.1 0.0 17 284-300 69-85 (859)
211 PF13514 AAA_27: AAA domain 75.3 2.5E+02 0.0055 36.1 25.5 12 653-664 1082-1093(1111)
212 PF05557 MAD: Mitotic checkpoi 74.6 55 0.0012 40.0 14.8 102 419-520 502-639 (722)
213 TIGR02449 conserved hypothetic 74.6 25 0.00055 29.7 8.3 56 451-513 3-58 (65)
214 COG4026 Uncharacterized protei 74.4 89 0.0019 32.6 13.7 86 419-511 134-220 (290)
215 PRK11281 hypothetical protein; 74.1 2.5E+02 0.0053 36.3 20.5 49 461-509 212-260 (1113)
216 PF09738 DUF2051: Double stran 73.7 59 0.0013 35.5 13.2 49 449-497 120-168 (302)
217 KOG2991|consensus 73.2 1.3E+02 0.0029 32.0 15.6 16 226-241 93-108 (330)
218 PF15035 Rootletin: Ciliary ro 73.0 1.1E+02 0.0024 30.9 15.9 151 390-559 4-165 (182)
219 PF15254 CCDC14: Coiled-coil d 72.6 1.1E+02 0.0024 37.3 15.8 91 424-518 459-560 (861)
220 KOG1029|consensus 72.6 2.4E+02 0.0052 34.6 26.1 154 334-494 435-588 (1118)
221 PF14662 CCDC155: Coiled-coil 72.6 1.2E+02 0.0026 31.1 21.6 42 417-458 78-119 (193)
222 PF00435 Spectrin: Spectrin re 72.6 59 0.0013 27.8 11.0 70 383-452 36-105 (105)
223 PF10473 CENP-F_leu_zip: Leuci 72.5 98 0.0021 30.1 20.0 12 497-508 87-98 (140)
224 PF15294 Leu_zip: Leucine zipp 72.3 73 0.0016 34.4 13.2 43 393-435 130-175 (278)
225 KOG0978|consensus 72.2 2.4E+02 0.0052 34.4 29.4 137 382-522 466-622 (698)
226 PRK10929 putative mechanosensi 71.9 3E+02 0.0066 35.5 31.6 34 464-497 260-293 (1109)
227 PLN02939 transferase, transfer 71.8 2.8E+02 0.0061 35.1 21.4 18 283-300 164-181 (977)
228 PF13863 DUF4200: Domain of un 71.2 88 0.0019 29.0 16.5 39 457-495 69-107 (126)
229 PF06120 Phage_HK97_TLTM: Tail 70.9 1.7E+02 0.0036 32.1 19.4 110 413-526 74-188 (301)
230 PF09744 Jnk-SapK_ap_N: JNK_SA 70.0 92 0.002 30.9 12.5 13 502-514 136-148 (158)
231 PF12777 MT: Microtubule-bindi 69.7 20 0.00044 39.6 8.9 80 422-501 223-302 (344)
232 PRK01156 chromosome segregatio 68.8 3.1E+02 0.0066 34.3 39.5 6 71-76 38-43 (895)
233 KOG1962|consensus 68.5 35 0.00075 35.5 9.5 57 412-468 150-206 (216)
234 PF00769 ERM: Ezrin/radixin/mo 68.4 1.6E+02 0.0036 31.1 17.0 6 623-628 190-195 (246)
235 PF13870 DUF4201: Domain of un 67.8 1.3E+02 0.0029 29.8 19.7 94 431-525 46-139 (177)
236 PF04136 Sec34: Sec34-like fam 67.5 92 0.002 30.7 12.0 74 422-495 2-75 (157)
237 TIGR03007 pepcterm_ChnLen poly 67.4 2.4E+02 0.0052 32.5 18.7 21 488-508 353-373 (498)
238 PF07851 TMPIT: TMPIT-like pro 67.0 50 0.0011 36.5 10.9 126 426-552 3-131 (330)
239 PF15450 DUF4631: Domain of un 66.8 2.6E+02 0.0057 32.8 30.7 74 489-567 400-473 (531)
240 PF09787 Golgin_A5: Golgin sub 66.5 2.6E+02 0.0057 32.7 22.6 18 616-633 414-431 (511)
241 PF14915 CCDC144C: CCDC144C pr 66.5 2E+02 0.0044 31.4 20.7 73 425-497 156-228 (305)
242 TIGR00634 recN DNA repair prot 66.1 2.8E+02 0.006 32.8 20.8 112 412-523 272-394 (563)
243 KOG1853|consensus 65.8 1.9E+02 0.0041 30.8 18.1 54 396-449 67-120 (333)
244 COG3883 Uncharacterized protei 64.9 63 0.0014 34.6 10.9 28 617-644 178-205 (265)
245 COG4026 Uncharacterized protei 64.7 48 0.001 34.5 9.5 66 376-445 123-188 (290)
246 PF12761 End3: Actin cytoskele 64.4 61 0.0013 33.2 10.2 33 464-496 162-194 (195)
247 KOG0978|consensus 64.4 3.4E+02 0.0073 33.2 27.7 92 412-503 530-621 (698)
248 KOG0018|consensus 64.2 4E+02 0.0087 34.0 24.8 13 58-70 26-38 (1141)
249 PRK15422 septal ring assembly 63.9 1E+02 0.0022 27.0 10.6 66 386-451 9-77 (79)
250 KOG4657|consensus 63.2 2E+02 0.0043 30.2 19.2 30 474-503 98-127 (246)
251 PRK00409 recombination and DNA 63.0 2.4E+02 0.0053 34.9 17.0 16 464-479 579-594 (782)
252 PF00015 MCPsignal: Methyl-acc 62.7 1.7E+02 0.0036 29.1 16.6 24 440-463 127-150 (213)
253 PF07106 TBPIP: Tat binding pr 62.5 54 0.0012 32.3 9.5 20 426-445 85-104 (169)
254 TIGR01069 mutS2 MutS2 family p 62.4 2.4E+02 0.0053 34.9 16.9 16 464-479 574-589 (771)
255 COG3883 Uncharacterized protei 62.1 2.3E+02 0.005 30.5 21.9 127 390-517 68-206 (265)
256 PF01576 Myosin_tail_1: Myosin 61.7 2.6 5.7E-05 52.2 0.0 22 570-591 509-530 (859)
257 PRK15422 septal ring assembly 61.6 50 0.0011 28.9 7.7 46 464-509 27-72 (79)
258 PF05557 MAD: Mitotic checkpoi 61.4 13 0.00028 45.3 5.8 21 282-302 305-325 (722)
259 KOG0993|consensus 61.3 94 0.002 35.1 11.6 59 393-451 105-165 (542)
260 TIGR03752 conj_TIGR03752 integ 60.6 69 0.0015 37.0 10.9 28 419-446 79-106 (472)
261 KOG4360|consensus 60.4 3.4E+02 0.0073 31.8 21.3 208 343-567 159-410 (596)
262 PF10211 Ax_dynein_light: Axon 60.3 2E+02 0.0043 29.2 14.4 65 428-492 121-186 (189)
263 KOG4673|consensus 60.0 3.9E+02 0.0085 32.5 27.0 20 282-301 423-442 (961)
264 PF15066 CAGE1: Cancer-associa 59.8 3.3E+02 0.0071 31.5 21.1 57 405-461 365-431 (527)
265 COG1340 Uncharacterized archae 59.4 2.7E+02 0.0058 30.4 25.3 109 399-514 162-275 (294)
266 KOG2751|consensus 59.1 2.5E+02 0.0053 32.2 14.5 76 390-478 152-227 (447)
267 PF15294 Leu_zip: Leucine zipp 59.0 1.8E+02 0.0039 31.5 13.0 22 424-445 129-150 (278)
268 PLN02939 transferase, transfer 58.2 2.3E+02 0.0049 36.0 15.4 88 359-453 165-252 (977)
269 KOG0239|consensus 57.6 4.3E+02 0.0094 32.2 18.7 31 422-452 243-273 (670)
270 PF06156 DUF972: Protein of un 57.5 98 0.0021 28.7 9.5 38 473-510 19-56 (107)
271 PF12761 End3: Actin cytoskele 57.4 50 0.0011 33.8 8.2 41 407-447 133-180 (195)
272 PF06705 SF-assemblin: SF-asse 57.2 2.5E+02 0.0055 29.4 25.2 73 483-567 121-193 (247)
273 PF05837 CENP-H: Centromere pr 57.1 1.6E+02 0.0034 27.1 10.9 35 487-527 55-89 (106)
274 PF02403 Seryl_tRNA_N: Seryl-t 57.1 97 0.0021 28.0 9.5 34 421-454 68-101 (108)
275 PF06156 DUF972: Protein of un 56.4 1E+02 0.0023 28.5 9.5 45 393-448 13-57 (107)
276 PF07106 TBPIP: Tat binding pr 56.4 73 0.0016 31.4 9.2 12 442-453 124-135 (169)
277 PF06632 XRCC4: DNA double-str 56.2 1.8E+02 0.0038 32.5 12.9 23 476-498 187-209 (342)
278 PF00015 MCPsignal: Methyl-acc 56.0 2.2E+02 0.0047 28.3 17.0 23 385-407 83-105 (213)
279 PF09755 DUF2046: Uncharacteri 55.4 3.2E+02 0.007 30.1 29.0 17 285-301 30-46 (310)
280 cd00176 SPEC Spectrin repeats, 55.4 2E+02 0.0044 27.8 17.5 71 383-453 35-105 (213)
281 PF11559 ADIP: Afadin- and alp 54.8 2E+02 0.0044 27.6 17.0 29 416-444 62-90 (151)
282 PF05529 Bap31: B-cell recepto 54.6 85 0.0018 31.6 9.5 21 468-488 160-180 (192)
283 PF06637 PV-1: PV-1 protein (P 54.5 3.6E+02 0.0079 30.4 15.8 27 378-404 321-347 (442)
284 PF06785 UPF0242: Uncharacteri 54.4 3.4E+02 0.0075 30.1 15.4 38 412-449 133-170 (401)
285 KOG0999|consensus 54.1 4.4E+02 0.0095 31.2 20.1 62 456-521 115-176 (772)
286 PF04420 CHD5: CHD5-like prote 54.0 58 0.0013 32.1 8.0 57 459-515 37-105 (161)
287 PF10267 Tmemb_cc2: Predicted 53.5 3.1E+02 0.0066 31.3 14.4 96 415-510 214-318 (395)
288 PRK10869 recombination and rep 53.0 4.6E+02 0.0099 31.1 23.7 18 442-459 300-317 (553)
289 KOG4603|consensus 52.9 2.6E+02 0.0056 28.2 13.5 37 414-450 80-116 (201)
290 TIGR03007 pepcterm_ChnLen poly 52.9 4.1E+02 0.009 30.6 24.1 28 481-508 353-380 (498)
291 KOG0288|consensus 52.8 3.9E+02 0.0086 30.5 14.7 58 406-463 13-70 (459)
292 KOG4807|consensus 52.7 3.9E+02 0.0085 30.3 25.9 68 452-519 509-583 (593)
293 PF12004 DUF3498: Domain of un 52.3 4.7 0.0001 46.7 0.0 76 422-497 417-493 (495)
294 KOG0982|consensus 52.2 4.2E+02 0.0091 30.4 17.6 137 347-490 301-438 (502)
295 PF12329 TMF_DNA_bd: TATA elem 52.1 1.5E+02 0.0034 25.4 9.5 55 443-497 14-68 (74)
296 COG3074 Uncharacterized protei 51.6 1.6E+02 0.0034 25.3 10.4 26 422-447 48-73 (79)
297 KOG0999|consensus 51.5 4.8E+02 0.01 30.9 26.8 124 376-503 102-231 (772)
298 TIGR03495 phage_LysB phage lys 51.3 2.4E+02 0.0052 27.3 11.5 57 429-485 21-77 (135)
299 PF04012 PspA_IM30: PspA/IM30 50.8 2.9E+02 0.0063 28.2 17.2 21 543-563 166-186 (221)
300 PF05384 DegS: Sensor protein 50.4 2.7E+02 0.0058 27.7 15.5 88 422-509 22-110 (159)
301 KOG2751|consensus 49.8 1.8E+02 0.0039 33.2 11.7 41 423-463 193-233 (447)
302 PF05130 FlgN: FlgN protein; 49.8 2.1E+02 0.0045 26.3 12.7 50 391-440 8-57 (143)
303 PF09177 Syntaxin-6_N: Syntaxi 49.7 65 0.0014 28.9 7.0 84 475-561 7-96 (97)
304 COG3074 Uncharacterized protei 49.7 1.7E+02 0.0036 25.2 9.9 48 463-510 26-73 (79)
305 PF05769 DUF837: Protein of un 49.7 2.9E+02 0.0063 27.9 17.9 82 426-520 69-150 (181)
306 PF14197 Cep57_CLD_2: Centroso 49.7 1.6E+02 0.0036 25.0 9.2 28 412-439 11-38 (69)
307 PF10224 DUF2205: Predicted co 49.6 1E+02 0.0022 27.2 7.8 50 435-484 17-66 (80)
308 KOG1760|consensus 49.4 2.4E+02 0.0053 26.9 10.9 76 423-498 26-117 (131)
309 PF04871 Uso1_p115_C: Uso1 / p 49.2 2.5E+02 0.0055 27.0 14.8 32 486-518 80-111 (136)
310 PRK10361 DNA recombination pro 48.3 5.1E+02 0.011 30.3 21.2 15 550-564 283-297 (475)
311 KOG4403|consensus 48.2 1.7E+02 0.0037 33.4 11.1 152 415-569 254-424 (575)
312 PF05377 FlaC_arch: Flagella a 47.8 78 0.0017 26.0 6.3 45 473-525 4-48 (55)
313 KOG1003|consensus 47.7 3.3E+02 0.0072 28.0 25.2 35 281-315 3-37 (205)
314 PF02183 HALZ: Homeobox associ 47.3 77 0.0017 24.8 6.0 19 424-442 16-34 (45)
315 KOG0972|consensus 47.0 4.2E+02 0.0091 28.9 14.5 112 412-526 240-360 (384)
316 PF05266 DUF724: Protein of un 46.7 3.3E+02 0.0072 27.7 12.3 7 440-446 130-136 (190)
317 PRK10636 putative ABC transpor 46.5 1.1E+02 0.0024 36.8 10.2 74 422-496 558-632 (638)
318 PF10481 CENP-F_N: Cenp-F N-te 46.4 4.1E+02 0.009 28.7 13.7 67 423-496 56-122 (307)
319 PRK07857 hypothetical protein; 46.1 74 0.0016 29.5 6.7 64 462-525 28-94 (106)
320 COG5283 Phage-related tail pro 45.9 8E+02 0.017 31.9 17.4 68 396-463 30-100 (1213)
321 PF09730 BicD: Microtubule-ass 45.8 6.6E+02 0.014 30.9 29.8 105 464-569 267-386 (717)
322 PF06248 Zw10: Centromere/kine 45.6 5.9E+02 0.013 30.3 17.5 84 396-485 15-99 (593)
323 TIGR02894 DNA_bind_RsfA transc 45.4 1.7E+02 0.0038 29.1 9.5 46 463-508 98-143 (161)
324 TIGR03545 conserved hypothetic 45.2 3.2E+02 0.007 32.5 13.6 26 484-509 245-270 (555)
325 PF04899 MbeD_MobD: MbeD/MobD 45.0 1.3E+02 0.0028 25.9 7.5 14 447-460 9-22 (70)
326 PF07412 Geminin: Geminin; In 45.0 47 0.001 34.1 5.8 52 463-515 119-170 (200)
327 KOG0962|consensus 44.9 8.6E+02 0.019 31.9 24.5 29 428-456 886-914 (1294)
328 PF02183 HALZ: Homeobox associ 44.8 75 0.0016 24.8 5.6 28 419-446 4-31 (45)
329 PF04977 DivIC: Septum formati 44.8 80 0.0017 26.5 6.5 24 423-446 27-50 (80)
330 PF03999 MAP65_ASE1: Microtubu 44.5 8.5 0.00018 46.0 0.5 87 439-525 82-184 (619)
331 TIGR03017 EpsF chain length de 44.0 5.2E+02 0.011 29.2 19.7 43 438-480 258-300 (444)
332 COG1322 Predicted nuclease of 43.8 5.7E+02 0.012 29.6 17.2 56 440-502 134-190 (448)
333 PF07798 DUF1640: Protein of u 43.6 3.5E+02 0.0075 27.0 17.2 129 340-480 16-156 (177)
334 KOG2010|consensus 43.5 73 0.0016 34.9 7.1 50 385-434 130-182 (405)
335 PF05335 DUF745: Protein of un 43.2 3.8E+02 0.0082 27.4 17.1 109 383-498 62-173 (188)
336 PF15112 DUF4559: Domain of un 43.0 3.7E+02 0.008 29.5 12.3 65 431-495 226-293 (307)
337 TIGR02231 conserved hypothetic 43.0 2.3E+02 0.005 33.1 12.0 22 472-493 134-155 (525)
338 cd07657 F-BAR_Fes_Fer The F-BA 42.8 4.3E+02 0.0092 27.8 19.7 28 493-520 186-213 (237)
339 KOG3809|consensus 42.6 4.5E+02 0.0098 30.2 13.2 63 387-449 506-568 (583)
340 PRK11519 tyrosine kinase; Prov 42.1 7.3E+02 0.016 30.4 18.9 81 439-523 316-399 (719)
341 KOG3915|consensus 41.9 31 0.00067 39.3 4.2 56 612-675 539-597 (641)
342 PF05278 PEARLI-4: Arabidopsis 41.8 4.8E+02 0.01 28.2 14.3 46 463-508 194-239 (269)
343 COG3599 DivIVA Cell division i 41.8 4.3E+02 0.0092 27.5 16.3 39 373-411 22-60 (212)
344 KOG2264|consensus 41.4 1.5E+02 0.0033 34.9 9.6 35 441-475 107-141 (907)
345 PF05262 Borrelia_P83: Borreli 41.4 6.5E+02 0.014 29.6 17.1 7 235-241 84-90 (489)
346 KOG2891|consensus 41.3 4.9E+02 0.011 28.1 13.7 34 419-452 396-429 (445)
347 PF10212 TTKRSYEDQ: Predicted 41.2 6.7E+02 0.014 29.6 18.1 29 469-497 487-515 (518)
348 PF09728 Taxilin: Myosin-like 40.8 5.2E+02 0.011 28.3 26.0 45 419-463 113-157 (309)
349 PF13870 DUF4201: Domain of un 40.4 3.8E+02 0.0082 26.5 18.5 23 457-479 147-169 (177)
350 PF07889 DUF1664: Protein of u 40.2 3.4E+02 0.0074 26.0 11.1 40 412-451 81-120 (126)
351 COG3879 Uncharacterized protei 40.1 2.1E+02 0.0045 30.5 9.8 75 451-527 33-108 (247)
352 TIGR00996 Mtu_fam_mce virulenc 40.0 4.8E+02 0.01 27.7 14.6 81 441-525 188-272 (291)
353 PF06103 DUF948: Bacterial pro 39.8 2.6E+02 0.0056 24.5 9.9 28 441-468 47-74 (90)
354 PF06810 Phage_GP20: Phage min 39.5 2.7E+02 0.0058 27.4 10.0 35 421-455 14-48 (155)
355 KOG0979|consensus 39.4 9.2E+02 0.02 30.7 22.8 137 391-527 244-396 (1072)
356 PF05335 DUF745: Protein of un 39.0 4.4E+02 0.0095 26.9 16.9 58 463-520 110-167 (188)
357 PRK14127 cell division protein 38.7 1.2E+02 0.0025 28.4 6.9 36 413-448 30-65 (109)
358 TIGR03752 conj_TIGR03752 integ 38.5 2.8E+02 0.0061 32.2 11.2 18 422-439 75-92 (472)
359 PF04949 Transcrip_act: Transc 38.5 4E+02 0.0087 26.3 15.4 71 444-514 66-136 (159)
360 cd00632 Prefoldin_beta Prefold 38.3 3.1E+02 0.0066 24.9 13.1 29 467-495 68-96 (105)
361 PF02994 Transposase_22: L1 tr 38.0 67 0.0015 36.0 6.3 80 441-521 105-188 (370)
362 PF12711 Kinesin-relat_1: Kine 37.8 80 0.0017 28.2 5.4 31 381-411 28-60 (86)
363 PF04977 DivIC: Septum formati 37.8 1.5E+02 0.0032 24.9 7.1 50 457-506 12-61 (80)
364 PF05911 DUF869: Plant protein 37.5 9E+02 0.02 30.1 20.2 190 287-505 43-236 (769)
365 PRK12705 hypothetical protein; 37.5 7.5E+02 0.016 29.2 18.5 17 501-517 173-189 (508)
366 PF02403 Seryl_tRNA_N: Seryl-t 37.3 2.1E+02 0.0046 25.8 8.5 27 467-493 72-98 (108)
367 KOG2391|consensus 36.4 1.9E+02 0.0041 32.1 9.0 60 393-452 223-285 (365)
368 TIGR03495 phage_LysB phage lys 36.3 4.1E+02 0.0088 25.8 10.9 36 462-497 61-96 (135)
369 TIGR03545 conserved hypothetic 36.2 3.3E+02 0.0072 32.4 11.8 25 620-644 510-536 (555)
370 PF14197 Cep57_CLD_2: Centroso 35.9 2.8E+02 0.006 23.7 8.8 13 426-438 11-23 (69)
371 PF07200 Mod_r: Modifier of ru 35.8 4E+02 0.0087 25.5 12.3 6 519-524 110-115 (150)
372 PF04728 LPP: Lipoprotein leuc 35.7 2.5E+02 0.0055 23.1 8.3 35 423-457 20-54 (56)
373 PF10205 KLRAQ: Predicted coil 35.7 3.6E+02 0.0078 24.9 10.6 45 468-512 25-69 (102)
374 TIGR01005 eps_transp_fam exopo 35.5 9.1E+02 0.02 29.5 22.7 30 484-513 370-399 (754)
375 PF09304 Cortex-I_coil: Cortex 35.0 3.8E+02 0.0082 25.0 12.4 89 412-515 1-90 (107)
376 KOG4460|consensus 34.9 8.5E+02 0.018 29.0 16.6 81 408-488 597-681 (741)
377 PF10458 Val_tRNA-synt_C: Valy 34.9 2.2E+02 0.0048 23.7 7.5 50 388-437 4-63 (66)
378 COG0497 RecN ATPase involved i 34.7 8.6E+02 0.019 29.0 21.3 15 507-521 374-388 (557)
379 TIGR01010 BexC_CtrB_KpsE polys 34.6 6.6E+02 0.014 27.7 18.7 83 438-520 218-308 (362)
380 KOG0982|consensus 34.6 7.7E+02 0.017 28.4 20.5 66 412-477 317-389 (502)
381 PF12709 Kinetocho_Slk19: Cent 34.6 3.4E+02 0.0074 24.4 9.9 27 424-450 46-72 (87)
382 KOG0240|consensus 34.6 8.7E+02 0.019 29.0 17.8 83 412-494 420-502 (607)
383 PF14362 DUF4407: Domain of un 34.5 6.1E+02 0.013 27.2 15.5 68 419-486 134-213 (301)
384 PRK00888 ftsB cell division pr 34.4 1.3E+02 0.0028 27.7 6.4 19 426-444 40-58 (105)
385 KOG2391|consensus 33.4 3.8E+02 0.0082 29.9 10.7 28 481-508 251-278 (365)
386 cd07686 F-BAR_Fer The F-BAR (F 33.2 6.1E+02 0.013 26.8 19.7 68 450-517 129-207 (234)
387 PRK06569 F0F1 ATP synthase sub 32.9 5E+02 0.011 25.7 16.3 37 399-435 55-92 (155)
388 PF11802 CENP-K: Centromere-as 32.7 6.6E+02 0.014 27.1 12.9 20 503-522 163-182 (268)
389 KOG3758|consensus 32.6 3.7E+02 0.0079 32.3 11.0 115 445-567 68-182 (655)
390 KOG2115|consensus 32.5 1.1E+03 0.024 29.7 16.5 74 387-463 238-311 (951)
391 TIGR01005 eps_transp_fam exopo 32.5 1E+03 0.022 29.2 23.9 21 283-303 195-215 (754)
392 PF04799 Fzo_mitofusin: fzo-li 32.5 3.5E+02 0.0077 27.2 9.5 32 430-461 140-171 (171)
393 PF05377 FlaC_arch: Flagella a 32.2 1.9E+02 0.0041 23.7 6.2 42 421-462 8-49 (55)
394 PRK00888 ftsB cell division pr 32.0 1.5E+02 0.0033 27.2 6.5 37 463-499 28-64 (105)
395 PRK13169 DNA replication intia 32.0 2.2E+02 0.0047 26.6 7.5 25 484-508 30-54 (110)
396 PF13874 Nup54: Nucleoporin co 32.0 2.7E+02 0.0058 26.8 8.6 13 356-368 15-27 (141)
397 PF06193 Orthopox_A5L: Orthopo 31.9 2E+02 0.0044 28.7 7.6 49 463-518 108-156 (166)
398 PRK13169 DNA replication intia 31.8 2.1E+02 0.0046 26.7 7.5 50 444-500 4-53 (110)
399 KOG0962|consensus 31.4 1.3E+03 0.029 30.3 30.2 55 620-676 838-892 (1294)
400 KOG1850|consensus 31.0 7.7E+02 0.017 27.3 22.9 143 419-569 115-263 (391)
401 PF05816 TelA: Toxic anion res 30.9 7.5E+02 0.016 27.2 14.0 26 490-515 169-194 (333)
402 PRK09343 prefoldin subunit bet 30.9 4.5E+02 0.0098 24.6 14.7 33 422-454 16-48 (121)
403 TIGR02231 conserved hypothetic 30.8 4.7E+02 0.01 30.5 12.0 27 469-495 145-171 (525)
404 TIGR02894 DNA_bind_RsfA transc 30.8 2.3E+02 0.005 28.2 7.8 29 470-498 119-147 (161)
405 KOG4005|consensus 30.6 3.8E+02 0.0082 28.4 9.6 50 540-595 209-262 (292)
406 cd00179 SynN Syntaxin N-termin 30.4 4.7E+02 0.01 24.7 16.8 68 388-456 6-73 (151)
407 PF13166 AAA_13: AAA domain 30.3 1E+03 0.022 28.6 21.4 57 461-518 416-472 (712)
408 PRK10869 recombination and rep 30.2 9.9E+02 0.021 28.3 25.8 86 423-518 299-387 (553)
409 PF05483 SCP-1: Synaptonemal c 30.2 1.1E+03 0.024 28.9 27.7 60 450-510 407-477 (786)
410 PF06818 Fez1: Fez1; InterPro 30.1 6.4E+02 0.014 26.1 15.8 32 421-452 67-98 (202)
411 PRK14140 heat shock protein Gr 30.0 3.5E+02 0.0076 27.7 9.3 62 463-524 38-100 (191)
412 PRK05431 seryl-tRNA synthetase 29.8 83 0.0018 36.0 5.4 74 613-688 33-106 (425)
413 PF09403 FadA: Adhesion protei 29.8 5E+02 0.011 24.8 16.6 37 461-497 88-124 (126)
414 PF03961 DUF342: Protein of un 29.8 3.5E+02 0.0075 31.1 10.5 12 15-26 8-19 (451)
415 KOG4572|consensus 29.6 1.1E+03 0.025 29.3 14.4 21 618-638 1207-1227(1424)
416 PF10205 KLRAQ: Predicted coil 29.2 4.6E+02 0.01 24.2 10.2 68 426-493 4-71 (102)
417 PF13514 AAA_27: AAA domain 28.8 1.4E+03 0.03 29.6 31.6 43 373-415 603-645 (1111)
418 PF09755 DUF2046: Uncharacteri 28.8 8.2E+02 0.018 27.0 23.8 46 464-509 144-190 (310)
419 PF01496 V_ATPase_I: V-type AT 28.8 1.1E+02 0.0024 37.5 6.6 25 667-691 259-283 (759)
420 KOG1103|consensus 28.1 8.9E+02 0.019 27.1 13.5 39 460-498 243-281 (561)
421 KOG4572|consensus 28.1 1.3E+03 0.028 29.0 17.0 31 483-513 1059-1089(1424)
422 PF09403 FadA: Adhesion protei 27.7 5.5E+02 0.012 24.6 13.4 90 385-479 31-120 (126)
423 PF07851 TMPIT: TMPIT-like pro 27.5 5.9E+02 0.013 28.3 11.1 46 464-509 6-51 (330)
424 COG1463 Ttg2C ABC-type transpo 27.5 8.8E+02 0.019 26.9 14.6 29 492-520 273-301 (359)
425 PF13935 Ead_Ea22: Ead/Ea22-li 27.5 4.8E+02 0.01 25.0 9.4 11 499-509 128-138 (139)
426 PF06428 Sec2p: GDP/GTP exchan 27.4 54 0.0012 30.0 2.7 33 469-501 51-83 (100)
427 PF04728 LPP: Lipoprotein leuc 27.3 3.6E+02 0.0077 22.3 8.5 49 462-510 3-51 (56)
428 PF04949 Transcrip_act: Transc 27.2 6.2E+02 0.013 25.0 16.9 16 464-479 121-136 (159)
429 PRK09841 cryptic autophosphory 27.1 1.2E+03 0.027 28.5 20.6 81 441-525 318-401 (726)
430 PRK10698 phage shock protein P 26.4 7.5E+02 0.016 25.7 17.2 63 444-511 95-157 (222)
431 PF07246 Phlebovirus_NSM: Phle 26.4 7.4E+02 0.016 26.7 11.2 17 285-301 76-92 (264)
432 PRK14155 heat shock protein Gr 26.3 2.7E+02 0.0059 28.8 7.9 63 462-524 13-76 (208)
433 TIGR00219 mreC rod shape-deter 26.3 1.8E+02 0.0039 31.4 7.0 37 464-500 68-108 (283)
434 KOG3091|consensus 26.3 1.1E+03 0.024 27.6 16.8 37 354-390 317-353 (508)
435 PF10805 DUF2730: Protein of u 26.2 4E+02 0.0087 24.4 8.3 29 462-490 65-93 (106)
436 COG1842 PspA Phage shock prote 26.1 7.8E+02 0.017 25.8 18.0 11 586-596 207-217 (225)
437 KOG2264|consensus 26.1 3.8E+02 0.0083 31.8 9.5 23 466-488 111-133 (907)
438 PF13166 AAA_13: AAA domain 26.0 1.2E+03 0.026 28.0 22.5 26 427-452 322-347 (712)
439 PF07989 Microtub_assoc: Micro 25.9 4.4E+02 0.0095 22.8 9.4 28 425-452 5-32 (75)
440 PF09311 Rab5-bind: Rabaptin-l 25.8 65 0.0014 32.4 3.2 45 406-450 8-52 (181)
441 PF07200 Mod_r: Modifier of ru 25.7 5.9E+02 0.013 24.3 15.6 44 423-466 44-87 (150)
442 smart00150 SPEC Spectrin repea 25.7 4E+02 0.0087 22.3 8.6 55 383-437 33-87 (101)
443 PF03961 DUF342: Protein of un 25.6 5.1E+02 0.011 29.7 10.9 26 424-449 379-404 (451)
444 cd07676 F-BAR_FBP17 The F-BAR 25.4 8.3E+02 0.018 25.9 18.6 145 381-525 93-242 (253)
445 COG3352 FlaC Putative archaeal 25.1 6.3E+02 0.014 25.0 9.5 59 423-481 54-112 (157)
446 PF13874 Nup54: Nucleoporin co 25.0 3.6E+02 0.0078 25.9 8.1 59 451-509 33-91 (141)
447 PRK10929 putative mechanosensi 25.0 1.6E+03 0.035 29.2 31.1 42 466-509 200-241 (1109)
448 TIGR02338 gimC_beta prefoldin, 25.0 5.4E+02 0.012 23.5 12.8 29 424-452 14-42 (110)
449 COG5420 Uncharacterized conser 24.9 3.7E+02 0.0079 22.8 6.7 39 420-461 6-44 (71)
450 PF12072 DUF3552: Domain of un 24.9 7.5E+02 0.016 25.2 18.3 26 456-481 93-118 (201)
451 TIGR00414 serS seryl-tRNA synt 24.8 1.2E+02 0.0025 34.7 5.4 76 611-688 33-109 (418)
452 smart00338 BRLZ basic region l 24.8 3.1E+02 0.0068 22.5 6.7 16 481-496 45-60 (65)
453 PF09744 Jnk-SapK_ap_N: JNK_SA 24.6 7E+02 0.015 24.7 15.7 73 423-498 53-125 (158)
454 PF12777 MT: Microtubule-bindi 24.5 9.8E+02 0.021 26.4 14.0 74 622-695 235-313 (344)
455 PF11570 E2R135: Coiled-coil r 24.4 6.5E+02 0.014 24.3 11.6 36 464-499 79-114 (136)
456 KOG4466|consensus 24.3 9.4E+02 0.02 26.1 12.8 51 399-449 61-119 (291)
457 PLN02320 seryl-tRNA synthetase 24.3 4.8E+02 0.011 30.7 10.3 32 423-454 133-164 (502)
458 PLN02678 seryl-tRNA synthetase 24.2 1.2E+02 0.0026 35.0 5.4 76 611-688 36-111 (448)
459 PF15397 DUF4618: Domain of un 24.2 9.1E+02 0.02 25.9 27.6 50 375-424 68-117 (258)
460 COG1570 XseA Exonuclease VII, 24.0 1.2E+03 0.025 27.1 15.5 52 401-452 271-324 (440)
461 KOG4571|consensus 23.9 2.3E+02 0.005 30.8 7.0 36 463-505 256-292 (294)
462 PF15272 BBP1_C: Spindle pole 23.9 8.1E+02 0.018 25.2 18.1 55 463-520 101-155 (196)
463 PRK10361 DNA recombination pro 23.8 1.2E+03 0.026 27.3 23.1 16 485-500 167-182 (475)
464 PRK14162 heat shock protein Gr 23.8 4.9E+02 0.011 26.7 9.1 56 468-523 45-101 (194)
465 COG4942 Membrane-bound metallo 23.8 1.2E+03 0.025 27.0 30.0 30 453-482 215-244 (420)
466 PLN02678 seryl-tRNA synthetase 23.7 5.7E+02 0.012 29.7 10.6 32 423-454 74-105 (448)
467 KOG2896|consensus 23.6 1.1E+03 0.024 26.7 15.1 75 377-451 76-151 (377)
468 smart00503 SynN Syntaxin N-ter 23.6 5.3E+02 0.012 23.0 15.0 64 389-453 9-72 (117)
469 PRK14148 heat shock protein Gr 23.6 5.5E+02 0.012 26.3 9.4 59 466-524 44-103 (195)
470 PRK11677 hypothetical protein; 23.4 4.6E+02 0.01 25.3 8.3 50 382-431 30-79 (134)
471 PF05700 BCAS2: Breast carcino 23.3 8.4E+02 0.018 25.2 12.4 8 227-234 11-18 (221)
472 PRK13729 conjugal transfer pil 23.3 2.3E+02 0.005 32.9 7.3 18 425-442 102-119 (475)
473 PF00804 Syntaxin: Syntaxin; 23.2 4.9E+02 0.011 22.4 13.3 63 389-452 8-70 (103)
474 PRK14163 heat shock protein Gr 23.2 4.6E+02 0.01 27.3 8.9 61 464-524 42-103 (214)
475 KOG3809|consensus 23.1 1.2E+03 0.026 27.0 13.9 30 486-515 542-571 (583)
476 PF09325 Vps5: Vps5 C terminal 23.0 8E+02 0.017 24.9 25.0 29 285-313 34-62 (236)
477 TIGR00414 serS seryl-tRNA synt 22.9 6.9E+02 0.015 28.5 11.2 11 394-404 50-60 (418)
478 PF01540 Lipoprotein_7: Adhesi 22.8 9.9E+02 0.021 25.9 12.8 131 422-563 85-224 (353)
479 PRK13729 conjugal transfer pil 22.7 2.7E+02 0.0059 32.4 7.7 17 482-498 103-119 (475)
480 PF10475 DUF2450: Protein of u 22.7 9.7E+02 0.021 25.7 16.6 73 398-470 38-110 (291)
481 PRK05431 seryl-tRNA synthetase 22.6 6.1E+02 0.013 29.0 10.7 29 424-452 70-98 (425)
482 cd07647 F-BAR_PSTPIP The F-BAR 22.3 8.9E+02 0.019 25.2 20.2 33 434-466 106-138 (239)
483 PF09798 LCD1: DNA damage chec 22.2 3.6E+02 0.0077 32.8 8.9 46 401-446 14-59 (654)
484 PF09728 Taxilin: Myosin-like 22.2 1.1E+03 0.023 26.0 25.9 33 484-517 273-305 (309)
485 PRK14154 heat shock protein Gr 22.2 5.1E+02 0.011 26.9 8.9 55 470-524 60-115 (208)
486 PF10458 Val_tRNA-synt_C: Valy 22.0 3.9E+02 0.0085 22.2 6.8 60 427-488 4-65 (66)
487 PRK14147 heat shock protein Gr 21.9 4E+02 0.0087 26.7 8.0 63 462-524 18-81 (172)
488 PF05103 DivIVA: DivIVA protei 21.9 59 0.0013 30.2 2.0 104 403-506 22-130 (131)
489 PF14257 DUF4349: Domain of un 21.9 3.8E+02 0.0082 28.2 8.3 64 384-449 128-191 (262)
490 PF09789 DUF2353: Uncharacteri 21.9 1.1E+03 0.024 26.1 22.2 206 279-504 20-231 (319)
491 PF14931 IFT20: Intraflagellar 21.8 6.9E+02 0.015 23.6 13.4 93 417-509 17-120 (120)
492 PF06148 COG2: COG (conserved 21.6 1.9E+02 0.0042 27.2 5.5 95 382-477 18-112 (133)
493 PF03980 Nnf1: Nnf1 ; InterPr 21.6 6.1E+02 0.013 23.0 9.7 97 400-497 8-108 (109)
494 PF05812 Herpes_BLRF2: Herpesv 21.4 1.3E+02 0.0027 28.5 4.0 24 421-444 4-27 (118)
495 PF07334 IFP_35_N: Interferon- 21.3 1.6E+02 0.0035 25.7 4.3 29 429-457 2-30 (76)
496 PF10267 Tmemb_cc2: Predicted 21.2 1.3E+03 0.027 26.5 18.3 135 390-524 214-354 (395)
497 PRK13922 rod shape-determining 21.0 7.1E+02 0.015 26.4 10.2 70 429-498 36-108 (276)
498 PF01025 GrpE: GrpE; InterPro 21.0 2E+02 0.0044 27.9 5.6 64 461-524 10-74 (165)
499 KOG4603|consensus 20.9 7.3E+02 0.016 25.1 9.2 68 418-490 77-144 (201)
500 PF04048 Sec8_exocyst: Sec8 ex 20.8 7.5E+02 0.016 23.7 14.3 104 392-495 37-142 (142)
No 1
>KOG0240|consensus
Probab=100.00 E-value=1.6e-89 Score=748.28 Aligned_cols=461 Identities=46% Similarity=0.602 Sum_probs=406.7
Q ss_pred CCCCCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeCC----eeeecceecCCCCChHHHHHHhhhhcceeeec
Q psy5718 11 IAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGG----KFYLFDKVFKPNATQEKVYDEAAKSIVSVQFV 86 (720)
Q Consensus 11 ~~~~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~~----k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~ 86 (720)
+.++|+|+|+||+||.+..|...++.+++.+.+.. .++.+.+ ++|.||+||+|+++|.+||..++.|+|++||.
T Consensus 3 d~~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~--~~v~~~~~~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~ 80 (607)
T KOG0240|consen 3 DSAECSIKVVCRFRPLNGLENNLGSKFIDCFENGE--NTVVLETTKETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLL 80 (607)
T ss_pred CCCCCceEEEEEeecCCchhhhcCCcCccCCCCCc--ceEEEecccccccceeeeecCCCccHHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999999888842 3777765 89999999999999999999999999999999
Q ss_pred C------------------------CCCceeehhhhhhhhhhhhhhcccccceeE-------------------------
Q psy5718 87 D------------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL------------------------- 117 (720)
Q Consensus 87 G------------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v------------------------- 117 (720)
| ++...|||||++++||++|+.+..+.+|+|
T Consensus 81 GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~nlsv 160 (607)
T KOG0240|consen 81 GYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKTNLSV 160 (607)
T ss_pred ccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccCCcee
Confidence 8 445779999999999999999999989888
Q ss_pred -------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccceeeeeeccCC
Q psy5718 118 -------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGS 190 (720)
Q Consensus 118 -------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL~lVDLAGS 190 (720)
+||+|+++++|.++++++++|+.|..+|++++|+||.+|||||+||+|+|.|.+..+.....|+|+|||||||
T Consensus 161 heDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~~~gkLyLVDLaGS 240 (607)
T KOG0240|consen 161 HEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRKLSGKLYLVDLAGS 240 (607)
T ss_pred ecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccchhhccccEEEEEcccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcccchHHhhhhccCCccccCc--ccccCC-cccccccchhhhhhhh--------hhhccccCCcccHHHHHh
Q psy5718 191 EKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF-TVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKK 259 (720)
Q Consensus 191 Er~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~-~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETls 259 (720)
|+++++|+.|..+.|+++||+||+|||+| ||++|. +||||||||||||||| ++|+||||+..|..||.+
T Consensus 241 EkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~S 320 (607)
T KOG0240|consen 241 EKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKS 320 (607)
T ss_pred cccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCcccccccccc
Confidence 99999999999999999999999999999 999995 9999999999999999 899999999999999999
Q ss_pred HHHHHHHhccccccchhhhHH---------HHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccccccccccC
Q psy5718 260 AIEYEKELGETRLLLQTNERR---------EQAR---KDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESED 327 (720)
Q Consensus 260 TL~fa~rak~Ikn~~~vN~~~---------~~~~---~~Lk~ei~~Lk~EL~~l~nlrk~~~qdl~~r~g~~~~~~e~~~ 327 (720)
||+||.||+.|+|.+.+|... +.+. ..+...++.+..+|.+| +.|..++.+++..
T Consensus 321 Tl~fg~rak~ikN~v~~n~e~~~e~~~r~~e~~kd~~~~~~~~~~~~~~sl~~~-------------~~~E~~~~de~~~ 387 (607)
T KOG0240|consen 321 TLRFGNRAKTIKNTVWVNLELTAEEWKRKLEKKKDKNVALKEELEKLRNSLKRW-------------RNGEEVKEDEDFS 387 (607)
T ss_pred chhhccccccccchhhhhhHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh-------------cccCcccchhhhh
Confidence 999999999999999999922 2222 34445555556666667 7788777666554
Q ss_pred CCCchHHHhHHHHHhhhhHHHHHHHHHHHhhhhcccccchhHHHhh--hhhHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q psy5718 328 DGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRL--RATMERVKLITTARRDYEQLQG---EMTRLTQ 402 (720)
Q Consensus 328 ~~~~~~~~qki~~le~~Le~L~~~~~qLv~dn~~l~~elp~~~~~~--~~~~Er~k~~ee~~~l~~ql~~---Ei~~~~q 402 (720)
.... .+... ..++.......+ ..+.+..++.+++..+|+|+|+ ++|+++|
T Consensus 388 ~~~~----~k~~~---------------------~~~~~~~~i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sq 442 (607)
T KOG0240|consen 388 LKEE----AKMSA---------------------ILSEEEMSITKLKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQ 442 (607)
T ss_pred HHHH----HHhhh---------------------hhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 10000 000000000111 2567788899999999999888 9999999
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy5718 403 ENESAKEEV---KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELT 479 (720)
Q Consensus 403 ~~ekLkeq~---eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~ 479 (720)
+.++|+.|+ +++++..+++|+..|.++.++|++++.++++++++++||++|++|||+++++.+.+...+
T Consensus 443 L~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~~~~~~~~~~~~~~~~~n-------- 514 (607)
T KOG0240|consen 443 LMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTALEELAVNYDQKSEEKESKLSQN-------- 514 (607)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhh--------
Confidence 999999999 899999999999999999999999999999999999999999999999999988877666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhhhhcCC
Q psy5718 480 LKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSE 527 (720)
Q Consensus 480 ~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~~~~~~ 527 (720)
+.+||+.+++.++||++||+++++.|++|+++||..+|++
T Consensus 515 --------~~sel~sl~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~ 554 (607)
T KOG0240|consen 515 --------LKSELQSLQEPSEHQSKRITELLSELRKDLGEIGWKIGTS 554 (607)
T ss_pred --------hHHHHHhhhhcccchhHHHHHHHHHHHhhhccccccccCC
Confidence 8899999999999999999999999999999999999998
No 2
>KOG0243|consensus
Probab=100.00 E-value=3.1e-66 Score=600.69 Aligned_cols=439 Identities=25% Similarity=0.314 Sum_probs=342.0
Q ss_pred CCCCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeC------CeeeecceecCCCCChHHHHHHhhhhcceeee
Q psy5718 12 AAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLG------GKFYLFDKVFKPNATQEKVYDEAAKSIVSVQF 85 (720)
Q Consensus 12 ~~~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~------~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl 85 (720)
..+.||+|+|||||+++.|....+..+|..++...++.+..+ .+.|+||+||||.+.|.+||+.++.|+|..|+
T Consensus 46 e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl 125 (1041)
T KOG0243|consen 46 EKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVL 125 (1041)
T ss_pred CCCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHh
Confidence 344799999999999999999899999998886544444433 47899999999999999999999999999999
Q ss_pred cC-----------------------------CCCceeehhhhhhhhhhhhhhcccccceeE-------------------
Q psy5718 86 VD-----------------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL------------------- 117 (720)
Q Consensus 86 ~G-----------------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v------------------- 117 (720)
.| .+...|||||++.+||+.+......+.+.|
T Consensus 126 ~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~~EYsvKVSfLELYNEEl~DLLa~~~~ 205 (1041)
T KOG0243|consen 126 EGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQGAEYSVKVSFLELYNEELTDLLASEDT 205 (1041)
T ss_pred ccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHHhcCCccc
Confidence 99 578899999999999999987665444444
Q ss_pred -------------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCC---c
Q psy5718 118 -------------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLEN---E 175 (720)
Q Consensus 118 -------------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~---~ 175 (720)
++|+|+.+++|.|+.|++.+|..|...|++++|.||.+|||||+||+|+|.-+.... +
T Consensus 206 ~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~gee 285 (1041)
T KOG0243|consen 206 SDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEE 285 (1041)
T ss_pred cccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcchh
Confidence 899999999999999999999999999999999999999999999999997654432 3
Q ss_pred ccccceeeeeeccCCcccccCCCcccchHHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh--------hhhc
Q psy5718 176 KKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN--------LVAR 245 (720)
Q Consensus 176 ~~~~skL~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd--------~mI~ 245 (720)
.+..|||+||||||||.++++|+.+.|.+|+..||+||++||+| ||.++.+|||||+||||||||| +||+
T Consensus 286 lvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iIA 365 (1041)
T KOG0243|consen 286 LVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCIIA 365 (1041)
T ss_pred hHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEEE
Confidence 57789999999999999999999999999999999999999999 9999999999999999999999 8999
Q ss_pred cccCCcccHHHHHhHHHHHHHhccccccchhhhHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccccccc
Q psy5718 246 CTSMESSQAEEHKKAIEYEKELGETRLLLQTNERREQAR--KDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAE 323 (720)
Q Consensus 246 ~iSPs~~~~~ETlsTL~fa~rak~Ikn~~~vN~~~~~~~--~~Lk~ei~~Lk~EL~~l~nlrk~~~qdl~~r~g~~~~~~ 323 (720)
||||+..+++||+|||.||.|||+|+|+|.+|.+..+.. ++|-.+|++|+.+|... +.++|.+.+.+
T Consensus 366 TiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~Aa-----------ReKnGvyisee 434 (1041)
T KOG0243|consen 366 TISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAA-----------REKNGVYISEE 434 (1041)
T ss_pred EeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHh-----------HhhCceEechH
Confidence 999999999999999999999999999999999776655 99999999999999887 44678887765
Q ss_pred cccC-CCCchHHHhHHHHHhhhhHHHHHHHHHHHhhhhcccccchhHHHhhhhhHHHHHHHHHHHHHHHHHHH---HHHH
Q psy5718 324 ESED-DGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQG---EMTR 399 (720)
Q Consensus 324 e~~~-~~~~~~~~qki~~le~~Le~L~~~~~qLv~dn~~l~~elp~~~~~~~~~~Er~k~~ee~~~l~~ql~~---Ei~~ 399 (720)
-... ++.......+|+.++..++.+.+....+.....-. ...+...-++..+.-..|+. ++..
T Consensus 435 ~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~-------------~~~~~~l~~~~~~~k~~L~~~~~el~~ 501 (1041)
T KOG0243|consen 435 RYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQ-------------LEIKELLKEEKEKLKSKLQNKNKELES 501 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5422 12222444556666666655554444433322100 00011111111122222222 3333
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q psy5718 400 LTQENESAKEEV---KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETL 474 (720)
Q Consensus 400 ~~q~~ekLkeq~---eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l 474 (720)
...+..+++.++ ++.+.........+......|+..++.+..++..+...|..+...+|.....+.....++-..
T Consensus 502 ~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~ 579 (1041)
T KOG0243|consen 502 LKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSEN 579 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHhhhhhHH
Confidence 333333333333 444555555556777778899999999999999999988877666555555555444444333
No 3
>KOG4280|consensus
Probab=100.00 E-value=1.2e-61 Score=542.45 Aligned_cols=288 Identities=30% Similarity=0.325 Sum_probs=261.2
Q ss_pred CCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-------CCeeeecceecCCCCChHHHHHHhhhhcceeeec
Q psy5718 14 EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-------GGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFV 86 (720)
Q Consensus 14 ~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-------~~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~ 86 (720)
.++|+|+||+||++..+...+...++.+++......+.. .+++|+||+||+++++|++||+.++.|+|++|++
T Consensus 4 ~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~ 83 (574)
T KOG4280|consen 4 ACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLE 83 (574)
T ss_pred ccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhc
Confidence 478999999999999888888888887777663333322 2478999999999999999999999999999999
Q ss_pred C----------------------CCCceeehhhhhhhhhhhhhhcccccceeE---------------------------
Q psy5718 87 D----------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL--------------------------- 117 (720)
Q Consensus 87 G----------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v--------------------------- 117 (720)
| ++...|||||++.+||.+|....+...|.+
T Consensus 84 GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~lr 163 (574)
T KOG4280|consen 84 GYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPKGLELR 163 (574)
T ss_pred ccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcCCceee
Confidence 9 367899999999999999988765544444
Q ss_pred ------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEe-eec--CCcccccceeeeeecc
Q psy5718 118 ------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQ-ENL--ENEKKLSGKLYLVDLA 188 (720)
Q Consensus 118 ------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q-~~~--~~~~~~~skL~lVDLA 188 (720)
+||+|++++.|.|+++++.++..|.++|++++|+||..|||||+||+|+|++ ... +.....+|+|+|||||
T Consensus 164 e~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvDLa 243 (574)
T KOG4280|consen 164 EDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVDLA 243 (574)
T ss_pred EcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceeeeeecc
Confidence 8999999999999999999999999999999999999999999999999999 322 2346788999999999
Q ss_pred CCcccccCCCcccchHHhhhhccCCccccCc--ccccCC-cccccccchhhhhhhh--------hhhccccCCcccHHHH
Q psy5718 189 GSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF-TVARLYISKMKSEVKN--------LVARCTSMESSQAEEH 257 (720)
Q Consensus 189 GSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~-~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ET 257 (720)
||||.+++|+.|.+++||.+||+||++||+| ||+++. +||||||||||+|||| +||+||||++++++||
T Consensus 244 gsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ET 323 (574)
T KOG4280|consen 244 GSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEET 323 (574)
T ss_pred chhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHH
Confidence 9999999999999999999999999999999 999998 4999999999999999 9999999999999999
Q ss_pred HhHHHHHHHhccccccchhhhHHH-HHHHHHHHHHHHHHHHHHHH
Q psy5718 258 KKAIEYEKELGETRLLLQTNERRE-QARKDLKGLEDTVTKELQTL 301 (720)
Q Consensus 258 lsTL~fa~rak~Ikn~~~vN~~~~-~~~~~Lk~ei~~Lk~EL~~l 301 (720)
++||+||+|||.|+|.|.+|+++. .....|+.+|+.|+.++...
T Consensus 324 lsTLrfA~Rak~I~nk~~ined~~~~~~~~lq~ei~~Lk~~l~~~ 368 (574)
T KOG4280|consen 324 LSTLRFAQRAKAIKNKPVINEDPKDALLRELQEEIERLKKELDPG 368 (574)
T ss_pred HHHHHHHHHHHHhhccccccCCcchhhHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999887 66699999999999999876
No 4
>KOG0245|consensus
Probab=100.00 E-value=2.5e-60 Score=541.77 Aligned_cols=286 Identities=25% Similarity=0.312 Sum_probs=255.3
Q ss_pred CCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeC-----CeeeecceecCCC-------CChHHHHHHhhhhcc
Q psy5718 14 EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLG-----GKFYLFDKVFKPN-------ATQEKVYDEAAKSIV 81 (720)
Q Consensus 14 ~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~-----~k~F~FD~VF~~~-------asQeeVY~~~~~plV 81 (720)
..+|+|+||||||+..|....++.++.+.++.. ++..+ ...|+||++||.. ++|..||+.++.|++
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~t--tii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL 80 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTT--TIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREML 80 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCce--eeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHH
Confidence 467999999999999999988999999988873 33222 2569999999873 889999999999999
Q ss_pred eeeecC-----------------------CCCceeehhhhhhhhhhhhhhcc-cccceeE--------------------
Q psy5718 82 SVQFVD-----------------------ADQYMVSVDRLRSDHQLKASTMC-EHSLMHL-------------------- 117 (720)
Q Consensus 82 ~~vl~G-----------------------~~~~~GIIpRav~~LF~~i~~~~-~~~~~~v-------------------- 117 (720)
+++|+| .++++|||||+|++||.+|.... ....|.|
T Consensus 81 ~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~ 160 (1221)
T KOG0245|consen 81 DHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPK 160 (1221)
T ss_pred HHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCC
Confidence 999999 45899999999999999997643 2344444
Q ss_pred --------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCc----cccc
Q psy5718 118 --------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENE----KKLS 179 (720)
Q Consensus 118 --------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~----~~~~ 179 (720)
|||.+|+.+.|+|+.|+.++|..|++.|++++|+||..|||||+||+|.+.|+..... ....
T Consensus 161 ~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~ 240 (1221)
T KOG0245|consen 161 SKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKV 240 (1221)
T ss_pred CCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceee
Confidence 9999999999999999999999999999999999999999999999999999776532 5678
Q ss_pred ceeeeeeccCCcccccCCCcccchHHhhhhccCCccccCc--ccccCC-------cccccccchhhhhhhh--------h
Q psy5718 180 GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF-------TVARLYISKMKSEVKN--------L 242 (720)
Q Consensus 180 skL~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~-------~hIPYRdSKLTrLLqd--------~ 242 (720)
|+|+|||||||||.+.+|+.|.|++||.+|||||++||.| ||++.. .+||||||.|||||++ .
T Consensus 241 SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTa 320 (1221)
T KOG0245|consen 241 SKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTA 320 (1221)
T ss_pred eeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhh
Confidence 9999999999999999999999999999999999999999 887632 5999999999999999 8
Q ss_pred hhccccCCcccHHHHHhHHHHHHHhccccccchhhhHHHH-HHHHHHHHHHHHHHHHHHH
Q psy5718 243 VARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNERREQ-ARKDLKGLEDTVTKELQTL 301 (720)
Q Consensus 243 mI~~iSPs~~~~~ETlsTL~fa~rak~Ikn~~~vN~~~~~-~~~~Lk~ei~~Lk~EL~~l 301 (720)
||+++||++.||+||||||+||.|||.|+|.++||+++.. .|++|+.+|.+|+.-|..-
T Consensus 321 MIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rLksll~~~ 380 (1221)
T KOG0245|consen 321 MIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARLKSLLRAQ 380 (1221)
T ss_pred hhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999998764 4599999999988877554
No 5
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=2.5e-57 Score=530.84 Aligned_cols=283 Identities=25% Similarity=0.327 Sum_probs=246.0
Q ss_pred CCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeCCeeeecceecCCCCChHHHHHHhhhhcceeeecC------
Q psy5718 14 EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD------ 87 (720)
Q Consensus 14 ~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G------ 87 (720)
.++|+|||||||+++.| .+...++.+ .++ .+.+.++.|.||+||+++++|.+||+.++.|+|+++|+|
T Consensus 97 ds~VkV~VRVRPl~~~E--~g~~iV~~~-s~d---sl~I~~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaTIF 170 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGE--EGEMIVQKM-SND---SLTINGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVF 170 (1320)
T ss_pred CCCeEEEEEcCCCCCcc--CCCeeEEEc-CCC---eEEEeCcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcceee
Confidence 57999999999999875 344444443 333 677788999999999999999999999999999999999
Q ss_pred --------------C-----------CCceeehhhhhhhhhhhhhhcc-----cccceeE--------------------
Q psy5718 88 --------------A-----------DQYMVSVDRLRSDHQLKASTMC-----EHSLMHL-------------------- 117 (720)
Q Consensus 88 --------------~-----------~~~~GIIpRav~~LF~~i~~~~-----~~~~~~v-------------------- 117 (720)
+ ...+|||||++.+||..+.... ..+.|.+
T Consensus 171 AYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~~ 250 (1320)
T PLN03188 171 AYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQ 250 (1320)
T ss_pred cCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceecccccc
Confidence 1 2468999999999999886421 1112211
Q ss_pred ------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecC----Ccccccce
Q psy5718 118 ------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLE----NEKKLSGK 181 (720)
Q Consensus 118 ------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~----~~~~~~sk 181 (720)
+||.|++++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|+|.+.... ......|+
T Consensus 251 k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~r~Sk 330 (1320)
T PLN03188 251 KNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKTSR 330 (1320)
T ss_pred CCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcceEEEE
Confidence 79999999999999999999999999999999999999999999999999875432 12356799
Q ss_pred eeeeeccCCcccccCCCcccchHHhhhhccCCccccCc--cccc-----CCcccccccchhhhhhhh--------hhhcc
Q psy5718 182 LYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEE-----EFTVARLYISKMKSEVKN--------LVARC 246 (720)
Q Consensus 182 L~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~-----~~~hIPYRdSKLTrLLqd--------~mI~~ 246 (720)
|+|||||||||+.++++.|.+++|+++||+||++||+| +|+. +..||||||||||+|||| +||+|
T Consensus 331 LnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMIa~ 410 (1320)
T PLN03188 331 INLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCA 410 (1320)
T ss_pred EEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEEEEe
Confidence 99999999999999999999999999999999999999 8864 237999999999999999 89999
Q ss_pred ccCCcccHHHHHhHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 247 TSMESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLH 302 (720)
Q Consensus 247 iSPs~~~~~ETlsTL~fa~rak~Ikn~~~vN~~~~~~~~~Lk~ei~~Lk~EL~~l~ 302 (720)
|||+..+++||++||+||+||+.|+|.|.+|......++.|+..|..|+.||.++.
T Consensus 411 VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL~rLK 466 (1320)
T PLN03188 411 ISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQRVK 466 (1320)
T ss_pred cCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999777777778888888888888774
No 6
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=2.8e-55 Score=475.95 Aligned_cols=252 Identities=32% Similarity=0.396 Sum_probs=230.5
Q ss_pred CEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-----------------CCeeeecceecCCCCChHHHHHHhhh
Q psy5718 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-----------------GGKFYLFDKVFKPNATQEKVYDEAAK 78 (720)
Q Consensus 16 ~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-----------------~~k~F~FD~VF~~~asQeeVY~~~~~ 78 (720)
+|+|||||||+++.|...+...++.+.++. ++.+ ..+.|.||+||+++++|++||+.++.
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~ 77 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDR---MLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTK 77 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCC---EEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHH
Confidence 599999999999999888888888887764 2222 24789999999999999999999999
Q ss_pred hcceeeecC---------------------CCCceeehhhhhhhhhhhhhhcccccceeE--------------------
Q psy5718 79 SIVSVQFVD---------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL-------------------- 117 (720)
Q Consensus 79 plV~~vl~G---------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v-------------------- 117 (720)
|+|+++++| ++..+|||||++++||..+........+.+
T Consensus 78 plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~ 157 (338)
T cd01370 78 PLVDGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSS 157 (338)
T ss_pred HHHHHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCC
Confidence 999999999 557899999999999999987654444333
Q ss_pred ------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecC---Cccccccee
Q psy5718 118 ------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLE---NEKKLSGKL 182 (720)
Q Consensus 118 ------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~---~~~~~~skL 182 (720)
++|+|++++.|.|+++++.+|..|.++|++++|.+|..|||||+||+|+|.+.+.. +.....|+|
T Consensus 158 ~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l 237 (338)
T cd01370 158 GPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKL 237 (338)
T ss_pred CCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEE
Confidence 79999999999999999999999999999999999999999999999999998876 456788999
Q ss_pred eeeeccCCcccccCCCcccchHHhhhhccCCccccCc--ccccCC---cccccccchhhhhhhh--------hhhccccC
Q psy5718 183 YLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF---TVARLYISKMKSEVKN--------LVARCTSM 249 (720)
Q Consensus 183 ~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~---~hIPYRdSKLTrLLqd--------~mI~~iSP 249 (720)
+|||||||||.+++++.|.+++|+++||+||++|++| +|+.+. .||||||||||+||+| +||+||||
T Consensus 238 ~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp 317 (338)
T cd01370 238 SLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISP 317 (338)
T ss_pred EEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCC
Confidence 9999999999999999999999999999999999999 998887 8999999999999999 89999999
Q ss_pred CcccHHHHHhHHHHHHHhccc
Q psy5718 250 ESSQAEEHKKAIEYEKELGET 270 (720)
Q Consensus 250 s~~~~~ETlsTL~fa~rak~I 270 (720)
+..+++||++||+||+|||+|
T Consensus 318 ~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 318 SSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred chhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999987
No 7
>KOG0242|consensus
Probab=100.00 E-value=1.4e-55 Score=510.12 Aligned_cols=287 Identities=31% Similarity=0.359 Sum_probs=251.9
Q ss_pred CCCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeC-------CeeeecceecCCCCChHHHHHHhhhhcceeee
Q psy5718 13 AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLG-------GKFYLFDKVFKPNATQEKVYDEAAKSIVSVQF 85 (720)
Q Consensus 13 ~~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~-------~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl 85 (720)
....|.|+|||||+++.+...+....|...++......... ...|.||+||+++++|++||+..++|+|.+|+
T Consensus 4 ~~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l 83 (675)
T KOG0242|consen 4 TEEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVL 83 (675)
T ss_pred ccceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHh
Confidence 45789999999999998766666666666666521111111 27899999999999999999999999999999
Q ss_pred cC---------------------CCCceeehhhhhhhhhhhhhhcccccceeE---------------------------
Q psy5718 86 VD---------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL--------------------------- 117 (720)
Q Consensus 86 ~G---------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v--------------------------- 117 (720)
.| ....|||||+++.+||..|.... ...|.+
T Consensus 84 ~G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~irE 162 (675)
T KOG0242|consen 84 EGFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPDGGDLRLRE 162 (675)
T ss_pred cCcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCCCCCceEeE
Confidence 99 56789999999999999998755 333333
Q ss_pred -----EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccceeeeeeccCCcc
Q psy5718 118 -----IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEK 192 (720)
Q Consensus 118 -----~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL~lVDLAGSEr 192 (720)
++|+||+++.|.|++++..+|..|..+|+++.|++|..|||||+||+|.|.+.....+. ..|+|+|||||||||
T Consensus 163 D~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~-~~s~L~lIDLAGSER 241 (675)
T KOG0242|consen 163 DSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREASS-RVSKLNLIDLAGSER 241 (675)
T ss_pred cCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEeccccccc-hhheehhhhhhhhhh
Confidence 89999999999999999999999999999999999999999999999999998766543 779999999999999
Q ss_pred cccCCCcccchHHhhhhccCCccccCc--ccccCC--cccccccchhhhhhhh--------hhhccccCCcccHHHHHhH
Q psy5718 193 VSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF--TVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKKA 260 (720)
Q Consensus 193 ~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~--~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETlsT 260 (720)
++++++.|.|++||++||+||++||+| +|+++. .||||||||||||||+ .|||||+|+..+++||.+|
T Consensus 242 as~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nT 321 (675)
T KOG0242|consen 242 ASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNT 321 (675)
T ss_pred hhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHH
Confidence 999999999999999999999999999 999984 8999999999999999 8999999999999999999
Q ss_pred HHHHHHhccccccchhhhHH--HHHHHHHHHHHHHHHHHHHHH
Q psy5718 261 IEYEKELGETRLLLQTNERR--EQARKDLKGLEDTVTKELQTL 301 (720)
Q Consensus 261 L~fa~rak~Ikn~~~vN~~~--~~~~~~Lk~ei~~Lk~EL~~l 301 (720)
|.||+|||.|++.+.+|... ......++.++..|+.++..+
T Consensus 322 L~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~ 364 (675)
T KOG0242|consen 322 LKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERL 364 (675)
T ss_pred HHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhh
Confidence 99999999999999999822 233355688999999998876
No 8
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=1.1e-54 Score=470.98 Aligned_cols=254 Identities=28% Similarity=0.327 Sum_probs=221.9
Q ss_pred CCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee--CCeeeecceecCCCCChHHHHHHhhhhcceeeecC-----
Q psy5718 15 DSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL--GGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD----- 87 (720)
Q Consensus 15 ~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~--~~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G----- 87 (720)
++|+|+|||||+++.|...+...++....++. .+.. ..+.|.||+||+++++|++||+.++.|+|+++|+|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~--~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti 78 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDT--LVWHSHPPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSI 78 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCc--EEeeCCCCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeE
Confidence 47999999999999987766777777665541 2222 24899999999999999999999999999999999
Q ss_pred ----------------C--------CCceeehhhhhhhhhhhhhhcc----cccceeE----------------------
Q psy5718 88 ----------------A--------DQYMVSVDRLRSDHQLKASTMC----EHSLMHL---------------------- 117 (720)
Q Consensus 88 ----------------~--------~~~~GIIpRav~~LF~~i~~~~----~~~~~~v---------------------- 117 (720)
+ ...+|||||++++||..+.... ....|.+
T Consensus 79 ~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~~~ 158 (337)
T cd01373 79 FAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSRN 158 (337)
T ss_pred EEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCCCC
Confidence 1 1368999999999999886431 1122221
Q ss_pred ----------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCc--ccccceeeee
Q psy5718 118 ----------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENE--KKLSGKLYLV 185 (720)
Q Consensus 118 ----------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~--~~~~skL~lV 185 (720)
++|+|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+.+.... ....|+|+||
T Consensus 159 l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s~l~~V 238 (337)
T cd01373 159 LKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTSRLNLV 238 (337)
T ss_pred ceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEEEEEEEEE
Confidence 7899999999999999999999999999999999999999999999999998765443 3567999999
Q ss_pred eccCCcccccCCCcccchHHhhhhccCCccccCc--cccc----CCcccccccchhhhhhhh--------hhhccccCCc
Q psy5718 186 DLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEE----EFTVARLYISKMKSEVKN--------LVARCTSMES 251 (720)
Q Consensus 186 DLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~----~~~hIPYRdSKLTrLLqd--------~mI~~iSPs~ 251 (720)
|||||||..++++.|.+++|+++||+||++|++| +|++ +..||||||||||+||+| +||+||||+.
T Consensus 239 DLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~~ 318 (337)
T cd01373 239 DLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSS 318 (337)
T ss_pred ECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCCc
Confidence 9999999999999999999999999999999999 8864 348999999999999999 8999999999
Q ss_pred ccHHHHHhHHHHHHHhccc
Q psy5718 252 SQAEEHKKAIEYEKELGET 270 (720)
Q Consensus 252 ~~~~ETlsTL~fa~rak~I 270 (720)
.+++||++||+||+|||.|
T Consensus 319 ~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 319 KCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred ccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999987
No 9
>KOG0241|consensus
Probab=100.00 E-value=4.3e-53 Score=474.15 Aligned_cols=288 Identities=27% Similarity=0.326 Sum_probs=254.2
Q ss_pred CCCEEEEEeeCCCCchhhccCCceEEEecCCCccceee---------eCCeeeecceecCCC-------CChHHHHHHhh
Q psy5718 14 EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLS---------LGGKFYLFDKVFKPN-------ATQEKVYDEAA 77 (720)
Q Consensus 14 ~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~---------~~~k~F~FD~VF~~~-------asQeeVY~~~~ 77 (720)
..+|||+|||||++.+|.+-..+++|.++.++...... -++++|.||++|++. ++|++||..++
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 46799999999999999988888888888776221111 125899999999874 78999999999
Q ss_pred hhcceeeecC---------------------CCCceeehhhhhhhhhhhhhhcc-cccceeE------------------
Q psy5718 78 KSIVSVQFVD---------------------ADQYMVSVDRLRSDHQLKASTMC-EHSLMHL------------------ 117 (720)
Q Consensus 78 ~plV~~vl~G---------------------~~~~~GIIpRav~~LF~~i~~~~-~~~~~~v------------------ 117 (720)
..+|+.+|+| ....+|||||++..||..|.... ++..|.|
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdP 162 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDP 162 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCC
Confidence 9999999999 56899999999999999997643 3344444
Q ss_pred ----------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCC----ccc
Q psy5718 118 ----------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLEN----EKK 177 (720)
Q Consensus 118 ----------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~----~~~ 177 (720)
+||.||++..|.|++++-.++..|+++|++++|+||..|||||+||.|.|.|.-.+. ...
T Consensus 163 k~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~Sge 242 (1714)
T KOG0241|consen 163 KGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGE 242 (1714)
T ss_pred CCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchh
Confidence 899999999999999999999999999999999999999999999999999865442 235
Q ss_pred ccceeeeeeccCCcccccCCCcccchHHhhhhccCCccccCc--ccccCC------cccccccchhhhhhhh--------
Q psy5718 178 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF------TVARLYISKMKSEVKN-------- 241 (720)
Q Consensus 178 ~~skL~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~------~hIPYRdSKLTrLLqd-------- 241 (720)
..|+|.|||||||||.+++|+.|.+++||.+||+||++||.| ||++.. ++||||||.||+||+|
T Consensus 243 KvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrT 322 (1714)
T KOG0241|consen 243 KVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRT 322 (1714)
T ss_pred heeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCcee
Confidence 579999999999999999999999999999999999999999 887643 6999999999999999
Q ss_pred hhhccccCCcccHHHHHhHHHHHHHhccccccchhhhHHHHHH-HHHHHHHHHHHHHHHHH
Q psy5718 242 LVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNERREQAR-KDLKGLEDTVTKELQTL 301 (720)
Q Consensus 242 ~mI~~iSPs~~~~~ETlsTL~fa~rak~Ikn~~~vN~~~~~~~-~~Lk~ei~~Lk~EL~~l 301 (720)
+||+||||+..||+||++||+||.|||.|+|+..+|.++...+ ++|+.+++.|...|...
T Consensus 323 vMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarvirElReEve~lr~qL~~a 383 (1714)
T KOG0241|consen 323 VMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARVIRELREEVEKLREQLEQA 383 (1714)
T ss_pred EEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHHHHHHHHHHHHHHHHHhhh
Confidence 8999999999999999999999999999999999999877655 88888888888777553
No 10
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=3.6e-53 Score=457.10 Aligned_cols=253 Identities=49% Similarity=0.655 Sum_probs=234.1
Q ss_pred CCEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeC----CeeeecceecCCCCChHHHHHHhhhhcceeeecC---
Q psy5718 15 DSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLG----GKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD--- 87 (720)
Q Consensus 15 ~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~----~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G--- 87 (720)
++|+|+|||||+++.|..++...++.++++. ++.+. .+.|.||+||+++++|++||+.++.|+|+.+++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~---~v~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~ 78 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGED---TVSIAGSDDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNG 78 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCC---EEEecCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccc
Confidence 6899999999999999878888999998875 55554 5899999999999999999999999999999999
Q ss_pred ------------------CC---CceeehhhhhhhhhhhhhhcccccceeE-----------------------------
Q psy5718 88 ------------------AD---QYMVSVDRLRSDHQLKASTMCEHSLMHL----------------------------- 117 (720)
Q Consensus 88 ------------------~~---~~~GIIpRav~~LF~~i~~~~~~~~~~v----------------------------- 117 (720)
+. ..+|||||++++||..+........|.+
T Consensus 79 ~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~ 158 (325)
T cd01369 79 TIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHEDK 158 (325)
T ss_pred eEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccCCceEEEcC
Confidence 22 3789999999999999877655444333
Q ss_pred ---EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccceeeeeeccCCcccc
Q psy5718 118 ---IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVS 194 (720)
Q Consensus 118 ---~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL~lVDLAGSEr~~ 194 (720)
++++|++++.|.|++++..+|..|.++|++++|.+|..|||||+||+|+|.+.+........|+|+||||||||+..
T Consensus 159 ~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~s~l~~VDLAGsE~~~ 238 (325)
T cd01369 159 NRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDLAGSEKVS 238 (325)
T ss_pred CCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCCCEEEEEEEEEECCCCCccc
Confidence 78999999999999999999999999999999999999999999999999999888888889999999999999999
Q ss_pred cCCCcccchHHhhhhccCCccccCc--ccccCC-cccccccchhhhhhhh--------hhhccccCCcccHHHHHhHHHH
Q psy5718 195 KTGAEGTVLDEAKNINKSLSADGAG--KLEEEF-TVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKKAIEY 263 (720)
Q Consensus 195 kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~-~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETlsTL~f 263 (720)
++++.|.+++|++.||+||++|++| +|+++. .|||||||+||+||+| +||+||||+..+++||++||+|
T Consensus 239 ~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~ 318 (325)
T cd01369 239 KTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRF 318 (325)
T ss_pred ccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHH
Confidence 9999999999999999999999999 999988 9999999999999999 9999999999999999999999
Q ss_pred HHHhccc
Q psy5718 264 EKELGET 270 (720)
Q Consensus 264 a~rak~I 270 (720)
|+|||+|
T Consensus 319 a~r~~~i 325 (325)
T cd01369 319 GARAKTI 325 (325)
T ss_pred HHHhhcC
Confidence 9999986
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=3.5e-53 Score=462.65 Aligned_cols=261 Identities=30% Similarity=0.375 Sum_probs=232.9
Q ss_pred CCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee---------CCeeeecceecCCC-------CChHHHHHHhhh
Q psy5718 15 DSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL---------GGKFYLFDKVFKPN-------ATQEKVYDEAAK 78 (720)
Q Consensus 15 ~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~---------~~k~F~FD~VF~~~-------asQeeVY~~~~~ 78 (720)
++|+|+|||||++..|...+...++.+++.. .++.. ..+.|.||+|||+. ++|++||+.++.
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~--v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~ 78 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKV--TTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGR 78 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCE--EEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHH
Confidence 4799999999999999888888888888743 23222 24689999999999 999999999999
Q ss_pred hcceeeecC---------------------CCCceeehhhhhhhhhhhhhhccc-ccceeE-------------------
Q psy5718 79 SIVSVQFVD---------------------ADQYMVSVDRLRSDHQLKASTMCE-HSLMHL------------------- 117 (720)
Q Consensus 79 plV~~vl~G---------------------~~~~~GIIpRav~~LF~~i~~~~~-~~~~~v------------------- 117 (720)
|+|++++.| +...+|||||++++||..+..... ...+.+
T Consensus 79 p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~ 158 (356)
T cd01365 79 ELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPK 158 (356)
T ss_pred HHHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCC
Confidence 999999999 456899999999999998865433 112211
Q ss_pred ----------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecC----Cccc
Q psy5718 118 ----------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLE----NEKK 177 (720)
Q Consensus 118 ----------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~----~~~~ 177 (720)
++|+|++++.|.|++++..+|..|.++|.+++|.+|..|||||+||+|+|.+.... ....
T Consensus 159 ~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~ 238 (356)
T cd01365 159 KKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTE 238 (356)
T ss_pred ccCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCce
Confidence 78999999999999999999999999999999999999999999999999987655 3457
Q ss_pred ccceeeeeeccCCcccccCCCcccchHHhhhhccCCccccCc--ccccC--------Ccccccccchhhhhhhh------
Q psy5718 178 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEE--------FTVARLYISKMKSEVKN------ 241 (720)
Q Consensus 178 ~~skL~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~--------~~hIPYRdSKLTrLLqd------ 241 (720)
..|+|+|||||||||..+++..|.+++|+.+||+||++|++| +|+.+ ..||||||||||+||+|
T Consensus 239 ~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s 318 (356)
T cd01365 239 KVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNS 318 (356)
T ss_pred EEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCc
Confidence 789999999999999999999999999999999999999999 77653 38999999999999999
Q ss_pred --hhhccccCCcccHHHHHhHHHHHHHhccccccchhh
Q psy5718 242 --LVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTN 277 (720)
Q Consensus 242 --~mI~~iSPs~~~~~ETlsTL~fa~rak~Ikn~~~vN 277 (720)
+||+||||+..+++||++||+||+|+++|+|.|++|
T Consensus 319 ~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 319 KTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred eEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 899999999999999999999999999999999876
No 12
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=6.6e-53 Score=459.77 Aligned_cols=265 Identities=32% Similarity=0.379 Sum_probs=235.1
Q ss_pred CCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee------CCeeeecceecCCCCChHHHHHHhhhhcceeeecC
Q psy5718 14 EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL------GGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD 87 (720)
Q Consensus 14 ~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~------~~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G 87 (720)
+++|+|+|||||+.+.|..+++..++.++++.....+.. ..+.|.||+||+++++|++||+.++.|+|+++++|
T Consensus 1 ~~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (352)
T cd01364 1 ESNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMG 80 (352)
T ss_pred CCCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 368999999999999998888888888887653333322 35789999999999999999999999999999998
Q ss_pred ---------------------C-----------CCceeehhhhhhhhhhhhhhcccccceeE------------------
Q psy5718 88 ---------------------A-----------DQYMVSVDRLRSDHQLKASTMCEHSLMHL------------------ 117 (720)
Q Consensus 88 ---------------------~-----------~~~~GIIpRav~~LF~~i~~~~~~~~~~v------------------ 117 (720)
+ +..+|||||++.+||..+......+.+.+
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~ 160 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQNTEYSVKVSYLELYNEELFDLLSSES 160 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhccceeEEEEEEEEeeCCeeeeCCCCcc
Confidence 1 34589999999999998876422221111
Q ss_pred -----------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCC---ccc
Q psy5718 118 -----------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLEN---EKK 177 (720)
Q Consensus 118 -----------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~---~~~ 177 (720)
++|+|++++.|.|++++..+|..|.++|.+++|.+|..|||||+||+|+|.+..... ...
T Consensus 161 ~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~~~ 240 (352)
T cd01364 161 DLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEELV 240 (352)
T ss_pred ccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCccE
Confidence 689999999999999999999999999999999999999999999999999876542 345
Q ss_pred ccceeeeeeccCCcccccCCCcccchHHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh--------hhhccc
Q psy5718 178 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN--------LVARCT 247 (720)
Q Consensus 178 ~~skL~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd--------~mI~~i 247 (720)
..|+|+||||||||+..+.++.+.+++|+++||+||++|++| +|+.+..|||||+|+||+||+| +||+||
T Consensus 241 ~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~v 320 (352)
T cd01364 241 KIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTKTSIIATI 320 (352)
T ss_pred EEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCceEEEEEEe
Confidence 679999999999999999999999999999999999999999 9999999999999999999999 899999
Q ss_pred cCCcccHHHHHhHHHHHHHhccccccchhhh
Q psy5718 248 SMESSQAEEHKKAIEYEKELGETRLLLQTNE 278 (720)
Q Consensus 248 SPs~~~~~ETlsTL~fa~rak~Ikn~~~vN~ 278 (720)
||+..+++||++||+||+||++|+|.|.+|.
T Consensus 321 sp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 321 SPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred CCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 9999999999999999999999999999985
No 13
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=7.4e-53 Score=458.11 Aligned_cols=251 Identities=29% Similarity=0.323 Sum_probs=220.9
Q ss_pred CCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-----------------CCeeeecceecCCCCChHHHHHHhh
Q psy5718 15 DSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-----------------GGKFYLFDKVFKPNATQEKVYDEAA 77 (720)
Q Consensus 15 ~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-----------------~~k~F~FD~VF~~~asQeeVY~~~~ 77 (720)
.+|+|||||||+++.|...+...++.+.++. ++.+ ..+.|.||+||+++++|++||+.++
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~ 77 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVINST---TIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTA 77 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEcCCC---EEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHH
Confidence 4799999999999998877777777776654 3322 2468999999999999999999999
Q ss_pred hhcceeeecC---------------------CCCceeehhhhhhhhhhhhhhccccc-----------------------
Q psy5718 78 KSIVSVQFVD---------------------ADQYMVSVDRLRSDHQLKASTMCEHS----------------------- 113 (720)
Q Consensus 78 ~plV~~vl~G---------------------~~~~~GIIpRav~~LF~~i~~~~~~~----------------------- 113 (720)
.|+|+++++| ++..+|||||++++||..+....-..
T Consensus 78 ~p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~~~v~~S~~EIyne~v~DLL~~~~~~~~~ 157 (345)
T cd01368 78 LPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGGYSVFVSYVEIYNNYIYDLLEDSPSSTKK 157 (345)
T ss_pred HHHHHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHheeEEEEEEEEeCCEeEeCCCCccccccC
Confidence 9999999998 56889999999999999764411000
Q ss_pred --ceeE-------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCC--------cc
Q psy5718 114 --LMHL-------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLEN--------EK 176 (720)
Q Consensus 114 --~~~v-------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~--------~~ 176 (720)
...+ ++|+|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+.+... ..
T Consensus 158 ~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~ 237 (345)
T cd01368 158 RQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDKDQ 237 (345)
T ss_pred CCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCCCc
Confidence 1111 799999999999999999999999999999999999999999999999999866532 45
Q ss_pred cccceeeeeeccCCcccccCCCcccchHHhhhhccCCccccCc--cccc------CCcccccccchhhhhhhh-------
Q psy5718 177 KLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEE------EFTVARLYISKMKSEVKN------- 241 (720)
Q Consensus 177 ~~~skL~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~------~~~hIPYRdSKLTrLLqd------- 241 (720)
...|+|+|||||||||..++++.|.+++|+.+||+||++|++| +|.+ +..||||||||||+||+|
T Consensus 238 ~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~s~ 317 (345)
T cd01368 238 ITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGK 317 (345)
T ss_pred eEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCCCe
Confidence 6789999999999999999999999999999999999999999 8876 348999999999999999
Q ss_pred -hhhccccCCcccHHHHHhHHHHHHHhc
Q psy5718 242 -LVARCTSMESSQAEEHKKAIEYEKELG 268 (720)
Q Consensus 242 -~mI~~iSPs~~~~~ETlsTL~fa~rak 268 (720)
+||+||||+..+++||++||+||.+|+
T Consensus 318 t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 318 ARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred EEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999985
No 14
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=3.1e-52 Score=449.34 Aligned_cols=250 Identities=27% Similarity=0.325 Sum_probs=222.3
Q ss_pred CCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-----------CCeeeecceecCCCCChHHHHHHhhhhccee
Q psy5718 15 DSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-----------GGKFYLFDKVFKPNATQEKVYDEAAKSIVSV 83 (720)
Q Consensus 15 ~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-----------~~k~F~FD~VF~~~asQeeVY~~~~~plV~~ 83 (720)
.+|+|+|||||+++.|...+...++.+++++ ...+.. ..+.|.||+||+++++|++||+.++.|+|+.
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~ 79 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNP-TVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPH 79 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCC-EEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHH
Confidence 4799999999999999877777788877763 112211 1478999999999999999999999999999
Q ss_pred eecC---------------------CCCceeehhhhhhhhhhhhhhcccccceeE-------------------------
Q psy5718 84 QFVD---------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL------------------------- 117 (720)
Q Consensus 84 vl~G---------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v------------------------- 117 (720)
+++| +...+|||||++++||..+......+.+.+
T Consensus 80 ~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~l~i~~~ 159 (322)
T cd01367 80 VFEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPNDDLGVTVSFFEIYGGKLFDLLNDRKRLSVLED 159 (322)
T ss_pred HhCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccccccEEEEEEEeeecCchhhhccCccceeEEEc
Confidence 9999 557889999999999999876442222222
Q ss_pred ----EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccceeeeeeccCCccc
Q psy5718 118 ----IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKV 193 (720)
Q Consensus 118 ----~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL~lVDLAGSEr~ 193 (720)
++|+|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+.+. ....|+|+|||||||||.
T Consensus 160 ~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~---~~~~s~l~~vDLAGsE~~ 236 (322)
T cd01367 160 GKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL---NKLLGKLSFIDLAGSERG 236 (322)
T ss_pred CCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC---CeeEEEEEEeecCCcccc
Confidence 7999999999999999999999999999999999999999999999999998765 556899999999999999
Q ss_pred ccCC-CcccchHHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh--------hhhccccCCcccHHHHHhHHH
Q psy5718 194 SKTG-AEGTVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKKAIE 262 (720)
Q Consensus 194 ~kt~-~~g~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETlsTL~ 262 (720)
.+++ ..+.++.|+++||+||++|++| +|+.+..||||||||||++|+| +||+||||+..+++||++||+
T Consensus 237 ~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~ 316 (322)
T cd01367 237 ADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLR 316 (322)
T ss_pred ccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHH
Confidence 8876 4688999999999999999999 9999999999999999999999 899999999999999999999
Q ss_pred HHHHhc
Q psy5718 263 YEKELG 268 (720)
Q Consensus 263 fa~rak 268 (720)
||+|+|
T Consensus 317 fa~r~k 322 (322)
T cd01367 317 YADRVK 322 (322)
T ss_pred HHHhhC
Confidence 999986
No 15
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=5.1e-52 Score=449.66 Aligned_cols=255 Identities=30% Similarity=0.377 Sum_probs=227.7
Q ss_pred CCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-------CCeeeecceecCCCCChHHHHHHhhhhcceeeecC
Q psy5718 15 DSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-------GGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD 87 (720)
Q Consensus 15 ~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-------~~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G 87 (720)
++|+|+|||||+++.|...++..++.++++.....+.. ..+.|.||+||+++++|++||+.++.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 47999999999999998888888888876664333332 24789999999999999999999999999999999
Q ss_pred ---------------------C---CCceeehhhhhhhhhhhhhhcccccceeE--------------------------
Q psy5718 88 ---------------------A---DQYMVSVDRLRSDHQLKASTMCEHSLMHL-------------------------- 117 (720)
Q Consensus 88 ---------------------~---~~~~GIIpRav~~LF~~i~~~~~~~~~~v-------------------------- 117 (720)
+ ...+|||||++++||..+..... ..|.+
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~-~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~i 159 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAEN-VQFLVRVSYLEIYNEEVRDLLGKDQKKKLEL 159 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccC-ccEEEEEEEEEeeCCeeeeCCCCCCCCceeE
Confidence 2 23899999999999998866432 11211
Q ss_pred -------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecC---Ccccccceeeeeec
Q psy5718 118 -------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLE---NEKKLSGKLYLVDL 187 (720)
Q Consensus 118 -------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~---~~~~~~skL~lVDL 187 (720)
++|+|++++.|.|++++..+|..|.++|.+++|.+|..|||||+||+|+|.+.+.. ......|+|+||||
T Consensus 160 ~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VDL 239 (333)
T cd01371 160 KERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDL 239 (333)
T ss_pred EEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEEC
Confidence 78999999999999999999999999999999999999999999999999987764 34567899999999
Q ss_pred cCCcccccCCCcccchHHhhhhccCCccccCc--ccccCC-cccccccchhhhhhhh--------hhhccccCCcccHHH
Q psy5718 188 AGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF-TVARLYISKMKSEVKN--------LVARCTSMESSQAEE 256 (720)
Q Consensus 188 AGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~-~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~E 256 (720)
|||||..++++.|.+++|+++||+||.+|++| +|+.+. .|||||||+||++|+| +||+||||+..+++|
T Consensus 240 AGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~e 319 (333)
T cd01371 240 AGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDE 319 (333)
T ss_pred CCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHH
Confidence 99999999999999999999999999999999 999888 5999999999999999 899999999999999
Q ss_pred HHhHHHHHHHhccc
Q psy5718 257 HKKAIEYEKELGET 270 (720)
Q Consensus 257 TlsTL~fa~rak~I 270 (720)
|++||+||+|||.|
T Consensus 320 Tl~TL~fa~r~r~I 333 (333)
T cd01371 320 TLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHHhhcC
Confidence 99999999999987
No 16
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=6.1e-52 Score=450.25 Aligned_cols=255 Identities=32% Similarity=0.454 Sum_probs=229.9
Q ss_pred CCEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeC-CeeeecceecCCCCChHHHHHHhhhhcceeeecC------
Q psy5718 15 DSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLG-GKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD------ 87 (720)
Q Consensus 15 ~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~-~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G------ 87 (720)
.+|+|+||+||+++.|...+...++.+.+.+ ..+.++ .+.|.||+||+++++|++||+.++.|+|+++|+|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~--~~v~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ 78 (341)
T cd01372 1 SSVRVAVRVRPLLPKELLEGCQVCVSVVPGE--PQVTVGTDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVL 78 (341)
T ss_pred CCeEEEEECCCCCchhcccCCCeEEEEeCCC--CEEEecCCcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCcccee
Confidence 4799999999999999888888888887765 244444 7899999999999999999999999999999999
Q ss_pred ---------------C------CCceeehhhhhhhhhhhhhhcccccceeE-----------------------------
Q psy5718 88 ---------------A------DQYMVSVDRLRSDHQLKASTMCEHSLMHL----------------------------- 117 (720)
Q Consensus 88 ---------------~------~~~~GIIpRav~~LF~~i~~~~~~~~~~v----------------------------- 117 (720)
+ ...+|||||++++||..+........|.+
T Consensus 79 ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l~i~ 158 (341)
T cd01372 79 AYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQIR 158 (341)
T ss_pred eecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCCCceEE
Confidence 1 35799999999999999876544222222
Q ss_pred ------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecC----------Ccccccce
Q psy5718 118 ------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLE----------NEKKLSGK 181 (720)
Q Consensus 118 ------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~----------~~~~~~sk 181 (720)
++|.|++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|+|.+.+.. ......|+
T Consensus 159 e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~ 238 (341)
T cd01372 159 EDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSK 238 (341)
T ss_pred ECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeEE
Confidence 78999999999999999999999999999999999999999999999999998763 34567899
Q ss_pred eeeeeccCCcccccCCCcccchHHhhhhccCCccccCc--ccccCC---cccccccchhhhhhhh--------hhhcccc
Q psy5718 182 LYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF---TVARLYISKMKSEVKN--------LVARCTS 248 (720)
Q Consensus 182 L~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~---~hIPYRdSKLTrLLqd--------~mI~~iS 248 (720)
|+||||||||+..++++.|.+++|+.+||+||++|++| +|+.+. .|||||+|+||+||+| +||+|||
T Consensus 239 l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~vs 318 (341)
T cd01372 239 FHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVS 318 (341)
T ss_pred EEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeC
Confidence 99999999999999999999999999999999999999 998876 7999999999999999 8999999
Q ss_pred CCcccHHHHHhHHHHHHHhcccc
Q psy5718 249 MESSQAEEHKKAIEYEKELGETR 271 (720)
Q Consensus 249 Ps~~~~~ETlsTL~fa~rak~Ik 271 (720)
|+..+++||++||+||+||++||
T Consensus 319 p~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 319 PADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred CChhhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999986
No 17
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=4.1e-51 Score=440.46 Aligned_cols=249 Identities=30% Similarity=0.408 Sum_probs=224.5
Q ss_pred CEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeC----CeeeecceecCCCCChHHHHHHhhhhcceeeecC----
Q psy5718 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLG----GKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD---- 87 (720)
Q Consensus 16 ~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~----~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G---- 87 (720)
+|+|+||+||++..|.. +...++.++++. ++.+. ++.|.||+||+++++|++||+.++.|+|++++.|
T Consensus 1 ~V~V~vRvRP~~~~e~~-~~~~~~~~~~~~---~v~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~ 76 (321)
T cd01374 1 KIKVSVRVRPLNPRESD-NEQVAWSIDNDN---TISLEESTPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGT 76 (321)
T ss_pred CeEEEEEcCcCCccccc-CCcceEEECCCC---EEEEcCCCCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCcee
Confidence 59999999999998873 566788888774 44443 5899999999999999999999999999999999
Q ss_pred -----------------CCCceeehhhhhhhhhhhhhhcccccceeE--------------------------------E
Q psy5718 88 -----------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL--------------------------------I 118 (720)
Q Consensus 88 -----------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v--------------------------------~ 118 (720)
+...+|||||++++||..+..... ..|.+ +
T Consensus 77 i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~~-~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~~~~~~~ 155 (321)
T cd01374 77 IFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPD-REFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKGV 155 (321)
T ss_pred EEeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhcccC-ceEEEEEEEEEEEcCEeEEccCCCCCCceEEECCCCCE
Confidence 457789999999999999865431 12211 7
Q ss_pred EecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCC---cccccceeeeeeccCCccccc
Q psy5718 119 VFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLEN---EKKLSGKLYLVDLAGSEKVSK 195 (720)
Q Consensus 119 ~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~---~~~~~skL~lVDLAGSEr~~k 195 (720)
+++|++++.|.|++++..+|..|.++|++++|.+|.+|||||+||+|+|.+.+... +....|+|+|||||||||..+
T Consensus 156 ~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~~~~ 235 (321)
T cd01374 156 VVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERASQ 235 (321)
T ss_pred EeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCcccc
Confidence 89999999999999999999999999999999999999999999999999987665 567789999999999999999
Q ss_pred CCCcccchHHhhhhccCCccccCc--ccccCC--cccccccchhhhhhhh--------hhhccccCCcccHHHHHhHHHH
Q psy5718 196 TGAEGTVLDEAKNINKSLSADGAG--KLEEEF--TVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKKAIEY 263 (720)
Q Consensus 196 t~~~g~rl~E~~~INkSL~aLg~V--aL~~~~--~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETlsTL~f 263 (720)
.+ .+.+++|+++||+||++|++| +|+.+. .|||||||+||+||+| +||+||||...+++||++||+|
T Consensus 236 ~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~ 314 (321)
T cd01374 236 TG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKF 314 (321)
T ss_pred CC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHH
Confidence 98 899999999999999999999 999985 9999999999999999 8999999999999999999999
Q ss_pred HHHhccc
Q psy5718 264 EKELGET 270 (720)
Q Consensus 264 a~rak~I 270 (720)
|+||++|
T Consensus 315 a~r~~~i 321 (321)
T cd01374 315 ASRAKKV 321 (321)
T ss_pred HHHHhcC
Confidence 9999986
No 18
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=5.4e-51 Score=439.20 Aligned_cols=249 Identities=27% Similarity=0.336 Sum_probs=217.9
Q ss_pred CEEEEEeeCCCCchhhccCCceEEEecCCCc--cceeee-------CCeeeecceecCCCCChHHHHHHhhhhcceeeec
Q psy5718 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGE--ENGLSL-------GGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFV 86 (720)
Q Consensus 16 ~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~--~~~v~~-------~~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~ 86 (720)
+|+|+|||||+.+.|. +...++.+.+.+. ...+.+ ..+.|.||+||+++++|++||+.++.|+|+.+++
T Consensus 1 ~i~V~vRvRP~~~~e~--~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~ 78 (319)
T cd01376 1 NVRVVVRVRPFLDCEE--DSSSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLS 78 (319)
T ss_pred CcEEEEEeCcCCcccc--CCCceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhC
Confidence 6999999999998883 3445565543321 112222 2478999999999999999999999999999999
Q ss_pred C---------------------CCCceeehhhhhhhhhhhhhhcccccceeE----------------------------
Q psy5718 87 D---------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL---------------------------- 117 (720)
Q Consensus 87 G---------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v---------------------------- 117 (720)
| +...+|||||++++||..+........+.+
T Consensus 79 G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~ 158 (319)
T cd01376 79 GQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQAWTGAFSMSYYEIYNEKVYDLLEPAKKELPIREDKD 158 (319)
T ss_pred CCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhccccceEEEEEEEEECCEeeEccCCCCCCceEEEcCC
Confidence 9 556899999999999998765432222222
Q ss_pred --EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccceeeeeeccCCccccc
Q psy5718 118 --IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSK 195 (720)
Q Consensus 118 --~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL~lVDLAGSEr~~k 195 (720)
++|+|++++.|.|++++..++..|.++|.+++|.+|..|||||+||+|+|.+.+.. ....|+|+||||||||+..+
T Consensus 159 ~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~--~~~~s~l~~VDLAGsE~~~~ 236 (319)
T cd01376 159 GNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN--IQLEGKLNLIDLAGSEDNRR 236 (319)
T ss_pred CCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC--ceEEEEEEEEECCCCCcccc
Confidence 78999999999999999999999999999999999999999999999999987543 36789999999999999999
Q ss_pred CCCcccchHHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh--------hhhccccCCcccHHHHHhHHHHHH
Q psy5718 196 TGAEGTVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKKAIEYEK 265 (720)
Q Consensus 196 t~~~g~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETlsTL~fa~ 265 (720)
+++.|.+++|+++||+||++|++| +|+.+..|||||||+||+||+| +||+||||+..+++||++||+||+
T Consensus 237 ~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~ 316 (319)
T cd01376 237 TGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFAS 316 (319)
T ss_pred cCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHH
Confidence 999999999999999999999999 9999989999999999999999 899999999999999999999999
Q ss_pred Hhc
Q psy5718 266 ELG 268 (720)
Q Consensus 266 rak 268 (720)
|||
T Consensus 317 r~~ 319 (319)
T cd01376 317 RSK 319 (319)
T ss_pred hhC
Confidence 986
No 19
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=2.4e-50 Score=435.68 Aligned_cols=257 Identities=34% Similarity=0.451 Sum_probs=229.5
Q ss_pred CCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-C----CeeeecceecCCCCChHHHHHHhhhhcceeeecC-
Q psy5718 14 EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-G----GKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD- 87 (720)
Q Consensus 14 ~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-~----~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G- 87 (720)
+|+|+|+|||||+.+.|. .....++.+++++.. ++.+ + .+.|.||+||+++++|++||+.+ .|+|+++++|
T Consensus 1 ~~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~-~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~v-~p~v~~~~~G~ 77 (329)
T cd01366 1 KGNIRVFCRVRPLLPSES-TEYSSVISFPDEDGG-TIELSKGTGKKKSFSFDRVFDPDASQEDVFEEV-SPLVQSALDGY 77 (329)
T ss_pred CCCEEEEEEcCcCCcccc-CCCccEEEEcCCCce-EEEEeCCCCCceEEecCEEECCCCCHHHHHHHH-HHHHHHHhCCC
Confidence 478999999999998875 345567777776422 3333 2 37899999999999999999985 8999999998
Q ss_pred --------------------CCCceeehhhhhhhhhhhhhhccc-ccceeE-----------------------------
Q psy5718 88 --------------------ADQYMVSVDRLRSDHQLKASTMCE-HSLMHL----------------------------- 117 (720)
Q Consensus 88 --------------------~~~~~GIIpRav~~LF~~i~~~~~-~~~~~v----------------------------- 117 (720)
+...+|||||++++||..+..... ...|.+
T Consensus 78 ~~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~ 157 (329)
T cd01366 78 NVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIK 157 (329)
T ss_pred ceEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEEE
Confidence 457799999999999998876543 222222
Q ss_pred ------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccceeeeeeccCCc
Q psy5718 118 ------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSE 191 (720)
Q Consensus 118 ------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL~lVDLAGSE 191 (720)
++++|++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|+|.+.+..++....|+|+||||||||
T Consensus 158 ~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~s~l~~VDLaGsE 237 (329)
T cd01366 158 HDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVDLAGSE 237 (329)
T ss_pred ECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCCcEEEEEEEEEECCCCc
Confidence 68999999999999999999999999999999999999999999999999998888788889999999999999
Q ss_pred ccccCCCcccchHHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh--------hhhccccCCcccHHHHHhHH
Q psy5718 192 KVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKKAI 261 (720)
Q Consensus 192 r~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETlsTL 261 (720)
+..+.++.+.+++|+.+||+||++|++| +|+.+..|||||+|+||++|+| +||+||||...+++||++||
T Consensus 238 ~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL 317 (329)
T cd01366 238 RLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSL 317 (329)
T ss_pred ccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHH
Confidence 9999999999999999999999999999 9999999999999999999999 89999999999999999999
Q ss_pred HHHHHhcccccc
Q psy5718 262 EYEKELGETRLL 273 (720)
Q Consensus 262 ~fa~rak~Ikn~ 273 (720)
+||+|+++|++.
T Consensus 318 ~~a~~~~~i~~~ 329 (329)
T cd01366 318 RFASRVRSVELG 329 (329)
T ss_pred HHHHHhhcccCC
Confidence 999999999873
No 20
>KOG0239|consensus
Probab=100.00 E-value=3.6e-50 Score=463.74 Aligned_cols=262 Identities=31% Similarity=0.356 Sum_probs=233.8
Q ss_pred CCCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeC-------CeeeecceecCCCCChHHHHHHhhhhcceeee
Q psy5718 13 AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLG-------GKFYLFDKVFKPNATQEKVYDEAAKSIVSVQF 85 (720)
Q Consensus 13 ~~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~-------~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl 85 (720)
.+|+|||||||||+.+.+.......++.++... ...+... .+.|.||+||+|.++|++||..+ .|+|.++|
T Consensus 312 LkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~-~~lv~S~l 389 (670)
T KOG0239|consen 312 LKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQG-EVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEV-SPLVQSAL 389 (670)
T ss_pred hhcCceEEEEecCCCccccccccccccccCCcc-eeEeecCCCCCCCccccceeeeecCCcccHHHHHHHH-HHHHHHHh
Confidence 479999999999999998765444444444331 1122211 13599999999999999999997 89999999
Q ss_pred cC--------------------C--CCceeehhhhhhhhhhhhhhcccccceeE--------------------------
Q psy5718 86 VD--------------------A--DQYMVSVDRLRSDHQLKASTMCEHSLMHL-------------------------- 117 (720)
Q Consensus 86 ~G--------------------~--~~~~GIIpRav~~LF~~i~~~~~~~~~~v-------------------------- 117 (720)
+| + +..+|||||++.+||..+......|.|.+
T Consensus 390 DGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~ 469 (670)
T KOG0239|consen 390 DGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKLE 469 (670)
T ss_pred cCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhcccccccccee
Confidence 99 2 46999999999999999988776666655
Q ss_pred --------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccceeeeeeccC
Q psy5718 118 --------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAG 189 (720)
Q Consensus 118 --------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL~lVDLAG 189 (720)
.+|+|++.+.|.+.+++..++..|.++|++++|.+|.+|||||+||+|+|...+..++....|.|+||||||
T Consensus 470 I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAG 549 (670)
T KOG0239|consen 470 IVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTGIRVTGVLNLVDLAG 549 (670)
T ss_pred EEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCcccccccceeEeeccc
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCcccchHHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh--------hhhccccCCcccHHHHHh
Q psy5718 190 SEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKK 259 (720)
Q Consensus 190 SEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETls 259 (720)
|||++++++.|.|++|+.+||+||++||+| ||+....||||||||||++||| +|+++|||...++.||++
T Consensus 550 SER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~ 629 (670)
T KOG0239|consen 550 SERVSKSGVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLC 629 (670)
T ss_pred CcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhh
Confidence 999999999999999999999999999999 9999999999999999999999 899999999999999999
Q ss_pred HHHHHHHhccccccchh
Q psy5718 260 AIEYEKELGETRLLLQT 276 (720)
Q Consensus 260 TL~fa~rak~Ikn~~~v 276 (720)
+|+||.|++.+...+-.
T Consensus 630 sL~FA~rv~~~~lG~a~ 646 (670)
T KOG0239|consen 630 SLRFATRVRSVELGSAR 646 (670)
T ss_pred ccchHHHhhceeccccc
Confidence 99999999999876654
No 21
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=1.3e-49 Score=430.99 Aligned_cols=246 Identities=31% Similarity=0.383 Sum_probs=211.6
Q ss_pred CEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-------------CCeeeecceecCCCCChHHHHHHhhhhcce
Q psy5718 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-------------GGKFYLFDKVFKPNATQEKVYDEAAKSIVS 82 (720)
Q Consensus 16 ~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-------------~~k~F~FD~VF~~~asQeeVY~~~~~plV~ 82 (720)
+|+|+||+||+...+.. .+.+++++...++.. ..+.|.||+||++ ++|++||+.++.|+|+
T Consensus 1 ~i~V~vRvRP~~~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~ 74 (334)
T cd01375 1 TIQVFVRVRPTPTKQGS-----SIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVD 74 (334)
T ss_pred CeEEEEECCCCCCCCCc-----cEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHH
Confidence 59999999999874322 223333322211111 1368999999999 9999999999999999
Q ss_pred eeecC------------------------CCCceeehhhhhhhhhhhhhhcccccceeE---------------------
Q psy5718 83 VQFVD------------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL--------------------- 117 (720)
Q Consensus 83 ~vl~G------------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v--------------------- 117 (720)
++|+| ....+|||||++.+||..+..... ..|.+
T Consensus 75 ~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~-~~~~v~~S~~Eiy~e~v~DLL~~~~~ 153 (334)
T cd01375 75 SALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRAT-KTYTVHVSYLEIYNEQLYDLLGDTPE 153 (334)
T ss_pred HHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhccC-cceEEEEEEEEEECCEeecCCCCCcc
Confidence 99999 124789999999999998865321 11111
Q ss_pred -----------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeee--cCCcccc
Q psy5718 118 -----------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQEN--LENEKKL 178 (720)
Q Consensus 118 -----------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~--~~~~~~~ 178 (720)
++|+|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+.+ .......
T Consensus 154 ~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~ 233 (334)
T cd01375 154 ALESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVR 233 (334)
T ss_pred ccccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceE
Confidence 799999999999999999999999999999999999999999999999999874 3445677
Q ss_pred cceeeeeeccCCcccccCCCcccchHHhhhhccCCccccCc--ccccCC-cccccccchhhhhhhh--------hhhccc
Q psy5718 179 SGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF-TVARLYISKMKSEVKN--------LVARCT 247 (720)
Q Consensus 179 ~skL~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~-~hIPYRdSKLTrLLqd--------~mI~~i 247 (720)
.|+|+|||||||||..++++.+..++|+++||+||++|++| +|+.+. .|||||||+||+||+| +||+||
T Consensus 234 ~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~v 313 (334)
T cd01375 234 LSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATI 313 (334)
T ss_pred EEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEe
Confidence 89999999999999999999999999999999999999999 999998 9999999999999999 899999
Q ss_pred cCCcccHHHHHhHHHHHHHhc
Q psy5718 248 SMESSQAEEHKKAIEYEKELG 268 (720)
Q Consensus 248 SPs~~~~~ETlsTL~fa~rak 268 (720)
||+..+++||++||+||+|++
T Consensus 314 sp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 314 WVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999985
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=2.3e-49 Score=428.87 Aligned_cols=261 Identities=37% Similarity=0.441 Sum_probs=235.1
Q ss_pred CEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-------CCeeeecceecCCCCChHHHHHHhhhhcceeeecC-
Q psy5718 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-------GGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD- 87 (720)
Q Consensus 16 ~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-------~~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G- 87 (720)
+|+|+|||||++..|...+...++.+++++.. .+.+ ..+.|.||+||+++++|++||+.++.|+|+.++.|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~ 79 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGK-TLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGY 79 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCC-EEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCC
Confidence 69999999999999988888888988777432 3332 24889999999999999999999999999999988
Q ss_pred --------------------CCCceeehhhhhhhhhhhhhhcccccceeE------------------------------
Q psy5718 88 --------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL------------------------------ 117 (720)
Q Consensus 88 --------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v------------------------------ 117 (720)
+...+|||||++++||..+........+.+
T Consensus 80 ~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i~~~~~ 159 (335)
T smart00129 80 NATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEIREDKK 159 (335)
T ss_pred ceeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCCCcEEEECCC
Confidence 557789999999999999876543333322
Q ss_pred --EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEee--ecCCcccccceeeeeeccCCccc
Q psy5718 118 --IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQE--NLENEKKLSGKLYLVDLAGSEKV 193 (720)
Q Consensus 118 --~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~--~~~~~~~~~skL~lVDLAGSEr~ 193 (720)
++++|++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|+|.+. +........|+|+||||||||+.
T Consensus 160 ~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLaGse~~ 239 (335)
T smart00129 160 GGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDLAGSERA 239 (335)
T ss_pred CCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEECCCCCcc
Confidence 79999999999999999999999999999999999999999999999999976 55556788899999999999999
Q ss_pred ccCCCcccchHHhhhhccCCccccCc--ccccC--Ccccccccchhhhhhhh--------hhhccccCCcccHHHHHhHH
Q psy5718 194 SKTGAEGTVLDEAKNINKSLSADGAG--KLEEE--FTVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKKAI 261 (720)
Q Consensus 194 ~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~--~~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETlsTL 261 (720)
.+.++.|.+++|+..||+||.+|++| +|+++ ..|||||+|+||++|++ +||+||||...+++||++||
T Consensus 240 ~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL 319 (335)
T smart00129 240 SKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTL 319 (335)
T ss_pred ccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHH
Confidence 99999999999999999999999999 88885 48999999999999999 89999999999999999999
Q ss_pred HHHHHhccccccchhh
Q psy5718 262 EYEKELGETRLLLQTN 277 (720)
Q Consensus 262 ~fa~rak~Ikn~~~vN 277 (720)
+||+++++|+|.|++|
T Consensus 320 ~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 320 RFASRAKEIKNKAIVN 335 (335)
T ss_pred HHHHHHhhcccCCCcC
Confidence 9999999999999875
No 23
>KOG0247|consensus
Probab=100.00 E-value=8.3e-48 Score=430.04 Aligned_cols=265 Identities=27% Similarity=0.340 Sum_probs=228.3
Q ss_pred CcCCCCCCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeC----------------CeeeecceecCCCCChHH
Q psy5718 8 DREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLG----------------GKFYLFDKVFKPNATQEK 71 (720)
Q Consensus 8 ~~~~~~~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~----------------~k~F~FD~VF~~~asQee 71 (720)
+.+.....+|.||||+||+.+. .++..|+.+.++. ++.+. .+.|.|.+||+|+++|.+
T Consensus 24 ~~S~~~~d~v~v~~rvrP~~~~---~~~~g~l~v~n~~---tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~d 97 (809)
T KOG0247|consen 24 GASCESKDPVLVVCRVRPLSDA---SEDEGCLRVINEE---TIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQAD 97 (809)
T ss_pred ccchhhhcchheeEeecCCCCC---ccccceEEEeccc---eeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHH
Confidence 4445667899999999999863 2344455555554 22221 268999999999999999
Q ss_pred HHHHhhhhcceeeecC---------------------CCCceeehhhhhhhhhhhhhhccc-ccc---------------
Q psy5718 72 VYDEAAKSIVSVQFVD---------------------ADQYMVSVDRLRSDHQLKASTMCE-HSL--------------- 114 (720)
Q Consensus 72 VY~~~~~plV~~vl~G---------------------~~~~~GIIpRav~~LF~~i~~~~~-~~~--------------- 114 (720)
||+.++.|+|.+++.| ++..+||+||++.-||..|..... ...
T Consensus 98 vF~~~~~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~ 177 (809)
T KOG0247|consen 98 VFDTTVAPLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEE 177 (809)
T ss_pred HHHHHhHHHHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHH
Confidence 9999999999998887 677889999999999998865210 000
Q ss_pred ------------------------------------------------eeE-----------------------------
Q psy5718 115 ------------------------------------------------MHL----------------------------- 117 (720)
Q Consensus 115 ------------------------------------------------~~v----------------------------- 117 (720)
|.|
T Consensus 178 ~alL~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ 257 (809)
T KOG0247|consen 178 DALLQLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLK 257 (809)
T ss_pred HHHHhhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhh
Confidence 000
Q ss_pred ---------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecC--Ccccccceeeeee
Q psy5718 118 ---------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLE--NEKKLSGKLYLVD 186 (720)
Q Consensus 118 ---------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~--~~~~~~skL~lVD 186 (720)
+||+|+++|+|.|.+|++.+|..|.++|++++|..|..|||||+||+|.|-+.... ...+..|.|.|||
T Consensus 258 ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvD 337 (809)
T KOG0247|consen 258 LLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVD 337 (809)
T ss_pred hhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeee
Confidence 89999999999999999999999999999999999999999999999999987766 5678889999999
Q ss_pred ccCCcccccCCCcccchHHhhhhccCCccccCc--ccccCC-----cccccccchhhhhhhh--------hhhccccCCc
Q psy5718 187 LAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF-----TVARLYISKMKSEVKN--------LVARCTSMES 251 (720)
Q Consensus 187 LAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~-----~hIPYRdSKLTrLLqd--------~mI~~iSPs~ 251 (720)
||||||..+++++|.|++||.+||.||++||+| +|.... .+|||||||||++++. .||+||+|..
T Consensus 338 LAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~ 417 (809)
T KOG0247|consen 338 LAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKA 417 (809)
T ss_pred cccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCch
Confidence 999999999999999999999999999999999 776543 8999999999999999 9999999999
Q ss_pred ccHHHHHhHHHHHHHhccccccchhhh
Q psy5718 252 SQAEEHKKAIEYEKELGETRLLLQTNE 278 (720)
Q Consensus 252 ~~~~ETlsTL~fa~rak~Ikn~~~vN~ 278 (720)
.+|+|+++.|+||.-|..|.+.+.++.
T Consensus 418 e~YdEnl~vlkFaeiaq~v~v~~~~~~ 444 (809)
T KOG0247|consen 418 EDYDENLNVLKFAEIAQEVEVARPVIK 444 (809)
T ss_pred hhHHHHHHHHHHHHhcccccccCcccc
Confidence 999999999999999999988777655
No 24
>KOG0244|consensus
Probab=100.00 E-value=2.2e-49 Score=454.11 Aligned_cols=276 Identities=29% Similarity=0.385 Sum_probs=247.2
Q ss_pred eCCCCchhhccCCceEEEecCCCccceeeeC-CeeeecceecCCCCChHHHHHHhhhhcceeeecC--------------
Q psy5718 23 FRPLNHSEEKAGSKFIVKFPSGGEENGLSLG-GKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD-------------- 87 (720)
Q Consensus 23 VRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~-~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G-------------- 87 (720)
|||+...|...|+..|+.+.+.. ..|.++ ..+|+||+||....+|.++|+.++.|+++.+|.|
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~--pqv~ig~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsg 78 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRT--PQVAIGKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSG 78 (913)
T ss_pred CCCccchHHHhcchhhcccCCCC--CceeecCCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCC
Confidence 69999999999999999855544 245554 6899999999999999999999999999999999
Q ss_pred -----------CCCceeehhhhhhhhhhhhhhcccccceeE---------------------------------EEecCc
Q psy5718 88 -----------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL---------------------------------IVFPGA 123 (720)
Q Consensus 88 -----------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v---------------------------------~~V~gl 123 (720)
.....|+|||+++.+|.+++.... ..|.+ +.+.|+
T Consensus 79 kTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e~~g~it~~gl 157 (913)
T KOG0244|consen 79 KTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSRLKANIKLREPKGEITIRGL 157 (913)
T ss_pred ceeecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhhhhhceeccccCCceEEEee
Confidence 122359999999999999987543 22222 678899
Q ss_pred EEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEee-ecCCcccccceeeeeeccCCcccccCCCcccc
Q psy5718 124 TERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQE-NLENEKKLSGKLYLVDLAGSEKVSKTGAEGTV 202 (720)
Q Consensus 124 tev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~-~~~~~~~~~skL~lVDLAGSEr~~kt~~~g~r 202 (720)
|+..|.+..++...+..|.-.|++++|+||..|||||+||||.+++. ........++||+|||||||||.+++++.|.+
T Consensus 158 te~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~kkT~a~gdr 237 (913)
T KOG0244|consen 158 TEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVKKTKAEGDR 237 (913)
T ss_pred hHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeeccccccccccccchhh
Confidence 99999999999999999999999999999999999999999999984 44455678899999999999999999999999
Q ss_pred hHHhhhhccCCccccCc--ccccCC--cccccccchhhhhhhh--------hhhccccCCcccHHHHHhHHHHHHHhccc
Q psy5718 203 LDEAKNINKSLSADGAG--KLEEEF--TVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKKAIEYEKELGET 270 (720)
Q Consensus 203 l~E~~~INkSL~aLg~V--aL~~~~--~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETlsTL~fa~rak~I 270 (720)
++||++||.+|++||+| ||+... .|||||||+||||||| +||+||||+.+|.+||++||+||.||+.|
T Consensus 238 lKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~i 317 (913)
T KOG0244|consen 238 LKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADRAKQI 317 (913)
T ss_pred hhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhHHHHh
Confidence 99999999999999999 998877 5999999999999999 99999999999999999999999999999
Q ss_pred cccchhhhHH-HHHHHHHHHHHHHHHHHHHHH
Q psy5718 271 RLLLQTNERR-EQARKDLKGLEDTVTKELQTL 301 (720)
Q Consensus 271 kn~~~vN~~~-~~~~~~Lk~ei~~Lk~EL~~l 301 (720)
+|+|.+|.++ ..++..|+.+|+.|+.+|...
T Consensus 318 knk~vvN~d~~~~~~~~lK~ql~~l~~ell~~ 349 (913)
T KOG0244|consen 318 KNKPVVNQDPKSFEMLKLKAQLEPLQVELLSK 349 (913)
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999944 566699999999999998776
No 25
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=3.6e-47 Score=410.35 Aligned_cols=249 Identities=37% Similarity=0.453 Sum_probs=223.0
Q ss_pred CEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeC---------CeeeecceecCCCCChHHHHHHhhhhcceeeec
Q psy5718 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLG---------GKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFV 86 (720)
Q Consensus 16 ~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~---------~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~ 86 (720)
+|+|+||+||+...| ..+...++.+++++ .+.+. .+.|.||+||+++++|++||+.++.|+|++++.
T Consensus 1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~ 76 (328)
T cd00106 1 NIRVVVRIRPLNGRE-SKSEESCITVDDNK---TVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLE 76 (328)
T ss_pred CeEEEEEcCCCCccc-ccCCCcEEEECCCC---EEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhC
Confidence 699999999998876 33566778888764 33332 389999999999999999999999999999999
Q ss_pred C---------------------CCCceeehhhhhhhhhhhhhhccc-ccceeE---------------------------
Q psy5718 87 D---------------------ADQYMVSVDRLRSDHQLKASTMCE-HSLMHL--------------------------- 117 (720)
Q Consensus 87 G---------------------~~~~~GIIpRav~~LF~~i~~~~~-~~~~~v--------------------------- 117 (720)
| +...+|||||++++||..+..... ...+.+
T Consensus 77 G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i 156 (328)
T cd00106 77 GYNGTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSL 156 (328)
T ss_pred CCceeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEE
Confidence 8 456799999999999999876532 111111
Q ss_pred -------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcc--cccceeeeeecc
Q psy5718 118 -------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEK--KLSGKLYLVDLA 188 (720)
Q Consensus 118 -------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~--~~~skL~lVDLA 188 (720)
++++|++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|+|.+.+..... ...|+|+|||||
T Consensus 157 ~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLa 236 (328)
T cd00106 157 REDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLA 236 (328)
T ss_pred EEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEECC
Confidence 68999999999999999999999999999999999999999999999999998877654 788999999999
Q ss_pred CCcccccCCCcccchHHhhhhccCCccccCc--ccccCC--cccccccchhhhhhhh--------hhhccccCCcccHHH
Q psy5718 189 GSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF--TVARLYISKMKSEVKN--------LVARCTSMESSQAEE 256 (720)
Q Consensus 189 GSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~--~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~E 256 (720)
|||+..+.+..+.++.|++.||+||.+|++| +|+.+. .|||||+|+||+||+| +||+||||...+++|
T Consensus 237 Gse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~e 316 (328)
T cd00106 237 GSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDE 316 (328)
T ss_pred CCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHH
Confidence 9999999999999999999999999999999 999888 9999999999999999 899999999999999
Q ss_pred HHhHHHHHHHhc
Q psy5718 257 HKKAIEYEKELG 268 (720)
Q Consensus 257 TlsTL~fa~rak 268 (720)
|++||+||+|||
T Consensus 317 Tl~tL~~a~r~~ 328 (328)
T cd00106 317 TLSTLRFASRAK 328 (328)
T ss_pred HHHHHHHHHhcC
Confidence 999999999986
No 26
>KOG0246|consensus
Probab=100.00 E-value=2.4e-46 Score=408.36 Aligned_cols=260 Identities=28% Similarity=0.297 Sum_probs=226.0
Q ss_pred cCCCCCCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-------------CCeeeecceecCCCCChHHHHHH
Q psy5718 9 REIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-------------GGKFYLFDKVFKPNATQEKVYDE 75 (720)
Q Consensus 9 ~~~~~~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-------------~~k~F~FD~VF~~~asQeeVY~~ 75 (720)
.....+..|.|+||-||++..|.......++.+|..+ .+.+ .++.|.||++|+..++++.||..
T Consensus 202 ~~~v~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~---~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrf 278 (676)
T KOG0246|consen 202 GDGVNEHRICVCVRKRPLNKKELTKKEIDVISVPSKN---VLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRF 278 (676)
T ss_pred CCCCccceEEEEeecCCCCchhccccccceEeccccc---eEEeeccccccchHHHHhhceEEEeeecccccchHHHHHH
Confidence 3456678999999999999999877777788887776 3332 25799999999999999999999
Q ss_pred hhhhcceeeecC---------------------------CCCceeehhhhhhhhhhhhhhcc-cccce-------eE---
Q psy5718 76 AAKSIVSVQFVD---------------------------ADQYMVSVDRLRSDHQLKASTMC-EHSLM-------HL--- 117 (720)
Q Consensus 76 ~~~plV~~vl~G---------------------------~~~~~GIIpRav~~LF~~i~~~~-~~~~~-------~v--- 117 (720)
+++|+|..+|+| .+...||+-.+..|+|..+.... ....+ .|
T Consensus 279 Ta~PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgG 358 (676)
T KOG0246|consen 279 TAKPLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGG 358 (676)
T ss_pred hhhHHHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCc
Confidence 999999999998 23455999999999999876521 11111 11
Q ss_pred ---------------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcc
Q psy5718 118 ---------------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEK 176 (720)
Q Consensus 118 ---------------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~ 176 (720)
+.|.||++..|.+.++++.+|..|++-|+++.|..|+.|||||+||+|.+.... +.
T Consensus 359 KvfDLL~~k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~---~~ 435 (676)
T KOG0246|consen 359 KVYDLLNDKKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG---EF 435 (676)
T ss_pred chhhhhccccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC---cc
Confidence 899999999999999999999999999999999999999999999999997632 35
Q ss_pred cccceeeeeeccCCcccccCC-CcccchHHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh---------hhh
Q psy5718 177 KLSGKLYLVDLAGSEKVSKTG-AEGTVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN---------LVA 244 (720)
Q Consensus 177 ~~~skL~lVDLAGSEr~~kt~-~~g~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd---------~mI 244 (720)
..+|++.||||||+||...+. ++.+...||+.||+||+||..| ||+.++.|+|||.||||.+|+| +||
T Consensus 436 k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMI 515 (676)
T KOG0246|consen 436 KLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMI 515 (676)
T ss_pred eeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEE
Confidence 788999999999999977664 4567778999999999999999 9999999999999999999999 999
Q ss_pred ccccCCcccHHHHHhHHHHHHHhccccccc
Q psy5718 245 RCTSMESSQAEEHKKAIEYEKELGETRLLL 274 (720)
Q Consensus 245 ~~iSPs~~~~~ETlsTL~fa~rak~Ikn~~ 274 (720)
+||||...+++.||+||+||.|+|......
T Consensus 516 A~ISPg~~ScEhTLNTLRYAdRVKeLsv~~ 545 (676)
T KOG0246|consen 516 ATISPGISSCEHTLNTLRYADRVKELSVDG 545 (676)
T ss_pred EEeCCCcchhhhhHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999876544
No 27
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=1.2e-46 Score=407.40 Aligned_cols=249 Identities=32% Similarity=0.431 Sum_probs=217.9
Q ss_pred eeCCCCchhhccCCceEEEecCCCccceee-------eCCeeeecceecCCCCChHHHHHHhhhhcceeeecC-------
Q psy5718 22 RFRPLNHSEEKAGSKFIVKFPSGGEENGLS-------LGGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD------- 87 (720)
Q Consensus 22 RVRPl~~~E~~~g~~~iv~~~~~~~~~~v~-------~~~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G------- 87 (720)
||||+++.|...+...++............ ...+.|.||+||+++++|++||+.++.|+|+++|+|
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 899999999988887777665321111111 124789999999999999999999999999999999
Q ss_pred --------------C--CCceeehhhhhhhhhhhhhhcccc--cceeE--------------------------------
Q psy5718 88 --------------A--DQYMVSVDRLRSDHQLKASTMCEH--SLMHL-------------------------------- 117 (720)
Q Consensus 88 --------------~--~~~~GIIpRav~~LF~~i~~~~~~--~~~~v-------------------------------- 117 (720)
+ ...+|||||++.+||..+...... ..+.+
T Consensus 81 yG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~ 160 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIRED 160 (335)
T ss_dssp EESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEE
T ss_pred eccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeec
Confidence 4 789999999999999999775432 22222
Q ss_pred -----EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcc----cccceeeeeecc
Q psy5718 118 -----IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEK----KLSGKLYLVDLA 188 (720)
Q Consensus 118 -----~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~----~~~skL~lVDLA 188 (720)
++|+|++++.|.|+++++.+|..|.++|.++.|.+|..|||||+||+|+|.+.+..... ...|+|+|||||
T Consensus 161 ~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLa 240 (335)
T PF00225_consen 161 SNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLA 240 (335)
T ss_dssp TTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEE
T ss_pred cccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeeecc
Confidence 68999999999999999999999999999999999999999999999999998877553 578999999999
Q ss_pred CCcccccCCC-cccchHHhhhhccCCccccCc--ccccC--Ccccccccchhhhhhhh--------hhhccccCCcccHH
Q psy5718 189 GSEKVSKTGA-EGTVLDEAKNINKSLSADGAG--KLEEE--FTVARLYISKMKSEVKN--------LVARCTSMESSQAE 255 (720)
Q Consensus 189 GSEr~~kt~~-~g~rl~E~~~INkSL~aLg~V--aL~~~--~~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ 255 (720)
|||+..+.++ .+.+++|++.||+||.+|++| +|+.+ ..|||||+|+||+||+| +||+||||...+++
T Consensus 241 GsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~ 320 (335)
T PF00225_consen 241 GSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYE 320 (335)
T ss_dssp ESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHH
T ss_pred cccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHH
Confidence 9999999886 478899999999999999999 99998 69999999999999999 89999999999999
Q ss_pred HHHhHHHHHHHhccc
Q psy5718 256 EHKKAIEYEKELGET 270 (720)
Q Consensus 256 ETlsTL~fa~rak~I 270 (720)
||++||+||.++++|
T Consensus 321 eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 321 ETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999999986
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=9.5e-40 Score=374.75 Aligned_cols=280 Identities=28% Similarity=0.348 Sum_probs=232.4
Q ss_pred CCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeC-CeeeecceecCCCCChHHHHHHhhhhcceeeecC-----
Q psy5718 14 EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLG-GKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD----- 87 (720)
Q Consensus 14 ~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~-~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G----- 87 (720)
-++++++++..|-...+ ... ...+......... ...|.||+||++.++|++||+.+++|+++.++.|
T Consensus 21 ~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~Tv 93 (568)
T COG5059 21 VSDIKSTIRIIPGELGE------RLI-NTSKKSHVSLEKSKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTV 93 (568)
T ss_pred ecCceEEEeecCCCcch------hee-ecccccccccccccceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceE
Confidence 35678888888854332 111 1222211111111 4679999999999999999999999999999998
Q ss_pred ----------------CCCceeehhhhhhhhhhhhhhcccccceeE--------------------------------EE
Q psy5718 88 ----------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL--------------------------------IV 119 (720)
Q Consensus 88 ----------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v--------------------------------~~ 119 (720)
....+||||+++.+||..+........+.+ ++
T Consensus 94 fayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~~~~~v~ 173 (568)
T COG5059 94 FAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGVK 173 (568)
T ss_pred EEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCccccccccccCCCceE
Confidence 457999999999999998766542222222 89
Q ss_pred ecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccceeeeeeccCCcccccCCCc
Q psy5718 120 FPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKTGAE 199 (720)
Q Consensus 120 V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL~lVDLAGSEr~~kt~~~ 199 (720)
|.|+++..|.+.++++.+|..|..+|+++.|.+|..|||||+||++++.+.+...+....++|+||||||||+++.+++.
T Consensus 174 v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLagSE~~~~~~~~ 253 (568)
T COG5059 174 VAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGSERAARTGNR 253 (568)
T ss_pred eecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCccceecceEEEEeeccccccchhhcc
Confidence 99999999999999999999999999999999999999999999999999988777777789999999999999999999
Q ss_pred ccchHHhhhhccCCccccCc--cccc--CCcccccccchhhhhhhh--------hhhccccCCcccHHHHHhHHHHHHHh
Q psy5718 200 GTVLDEAKNINKSLSADGAG--KLEE--EFTVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKKAIEYEKEL 267 (720)
Q Consensus 200 g~rl~E~~~INkSL~aLg~V--aL~~--~~~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETlsTL~fa~ra 267 (720)
+.++.||.+||+||.+||+| +|.. +..|||||+|||||+||+ +|||||+|...++++|.+||+||.||
T Consensus 254 ~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~ra 333 (568)
T COG5059 254 GTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRA 333 (568)
T ss_pred cchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999 9987 669999999999999999 89999999999999999999999999
Q ss_pred ccccccchhhh--HHHHHHHHHHHHHHHHHHHHHH
Q psy5718 268 GETRLLLQTNE--RREQARKDLKGLEDTVTKELQT 300 (720)
Q Consensus 268 k~Ikn~~~vN~--~~~~~~~~Lk~ei~~Lk~EL~~ 300 (720)
+.|+|.+..|. .....+..++..+...+.....
T Consensus 334 k~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 368 (568)
T COG5059 334 KSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIEI 368 (568)
T ss_pred hhcCCcccccCcCcchHHHHHHHhhhhhhhhhhhh
Confidence 99999999994 3334444444444444444333
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=6.4e-34 Score=284.16 Aligned_cols=145 Identities=39% Similarity=0.515 Sum_probs=134.6
Q ss_pred HHHHhhhhcceeeecC---------------------CCCceeehhhhhhhhhhhhhhcccccceeEEEecCcEEEEecC
Q psy5718 72 VYDEAAKSIVSVQFVD---------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVFPGATERFVGK 130 (720)
Q Consensus 72 VY~~~~~plV~~vl~G---------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v~~V~gltev~V~S 130 (720)
||+.++ |+|+.+++| +...+||||+++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~----------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD----------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH-----------------------------
Confidence 888888 888888888 45678999999887
Q ss_pred hhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCC---cccccceeeeeeccCCcccccCCCcccchHHhh
Q psy5718 131 PEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLEN---EKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAK 207 (720)
Q Consensus 131 ~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~---~~~~~skL~lVDLAGSEr~~kt~~~g~rl~E~~ 207 (720)
++.++..|.++|.+++|.+|..|||||+||+|++.+.+... .....|+|+||||||||++.++++.+.+++|++
T Consensus 58 ---~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~ 134 (186)
T cd01363 58 ---VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETA 134 (186)
T ss_pred ---HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCCccceeeeeEEEEEccccccccccCCchhhHHHHH
Confidence 78889999999999999999999999999999999987655 567789999999999999999999999999999
Q ss_pred hhccCCccccCc--ccccCCcccccccchhhhhhhh--------hhhccccC
Q psy5718 208 NINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN--------LVARCTSM 249 (720)
Q Consensus 208 ~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd--------~mI~~iSP 249 (720)
+||+||++|++| +|+++..||||||||||+||+| +||+||||
T Consensus 135 ~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 135 NINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred HHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCCeEEEEEEeCc
Confidence 999999999999 9999999999999999999999 89999999
No 30
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.55 E-value=0.076 Score=61.31 Aligned_cols=61 Identities=30% Similarity=0.484 Sum_probs=30.4
Q ss_pred hHHHHHhhhhHHHHHHHHHHHhhhhcccccchhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 336 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKE 413 (720)
Q Consensus 336 qki~~le~~Le~L~~~~~qLv~dn~~l~~elp~~~~~~~~~~Er~k~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~ee 413 (720)
.|..+++++++...+....|+..+..+..+. +.+.....+++.++....+..++|+++.++
T Consensus 136 ~ka~~lQ~qlE~~qkE~eeL~~~~~~Le~e~-----------------~~l~~~v~~l~~eL~~~~ee~e~L~~~~ke 196 (546)
T PF07888_consen 136 TKAQLLQNQLEECQKEKEELLKENEQLEEEV-----------------EQLREEVERLEAELEQEEEEMEQLKQQQKE 196 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777666555555554444432221 233333444555555555555555555533
No 31
>PRK02224 chromosome segregation protein; Provisional
Probab=97.52 E-value=0.25 Score=60.91 Aligned_cols=7 Identities=0% Similarity=0.230 Sum_probs=3.5
Q ss_pred hhhhhhh
Q psy5718 234 KMKSEVK 240 (720)
Q Consensus 234 KLTrLLq 240 (720)
.++++|.
T Consensus 139 e~~~~l~ 145 (880)
T PRK02224 139 EVNKLIN 145 (880)
T ss_pred ChHHHHc
Confidence 3555554
No 32
>KOG0161|consensus
Probab=97.47 E-value=0.18 Score=65.79 Aligned_cols=106 Identities=16% Similarity=0.273 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q psy5718 396 EMTRLTQENESAKEEVKELITTARRD---YEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFE 472 (720)
Q Consensus 396 Ei~~~~q~~ekLkeq~eell~~~~~~---~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~ 472 (720)
+.+.+.....++.++++++.....+. ..++.....++-.++..+.+.+.+....-++|.....-+.-++-....+++
T Consensus 1007 k~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e 1086 (1930)
T KOG0161|consen 1007 KAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLE 1086 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555556666666663333332222 222223333444444444555554444444444444445555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5718 473 TLTEELTLKQTTLNTTSTELQQIKDMSNH 501 (720)
Q Consensus 473 ~l~~el~~~~~~~~~l~~el~~l~~~~~~ 501 (720)
.....+++++..+..|++.+..|.+.-..
T Consensus 1087 ~e~~~~~~l~k~i~eL~~~i~el~e~le~ 1115 (1930)
T KOG0161|consen 1087 DEQAEVAQLQKQIKELEARIKELEEELEA 1115 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555544333
No 33
>PRK02224 chromosome segregation protein; Provisional
Probab=97.46 E-value=0.47 Score=58.59 Aligned_cols=6 Identities=0% Similarity=0.285 Sum_probs=2.7
Q ss_pred HHHHHh
Q psy5718 71 KVYDEA 76 (720)
Q Consensus 71 eVY~~~ 76 (720)
.|++.+
T Consensus 38 til~ai 43 (880)
T PRK02224 38 SLLEAC 43 (880)
T ss_pred HHHHHH
Confidence 444443
No 34
>KOG0161|consensus
Probab=97.34 E-value=0.58 Score=61.45 Aligned_cols=81 Identities=20% Similarity=0.309 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q psy5718 399 RLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEEL 478 (720)
Q Consensus 399 ~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el 478 (720)
+..+..++.+..++-.+.........+......++..+.....++-.+...+++......+..+.+.++...+..|.++|
T Consensus 1034 ~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~l 1113 (1930)
T KOG0161|consen 1034 RIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEEL 1113 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444442222333333334444555555555555555555555555555555555555555555555555554
Q ss_pred H
Q psy5718 479 T 479 (720)
Q Consensus 479 ~ 479 (720)
.
T Consensus 1114 e 1114 (1930)
T KOG0161|consen 1114 E 1114 (1930)
T ss_pred H
Confidence 3
No 35
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.23 E-value=0.34 Score=61.02 Aligned_cols=77 Identities=18% Similarity=0.251 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 422 YEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDM 498 (720)
Q Consensus 422 ~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~ 498 (720)
+..++.++..++.+......++......+..+...+.....+++.+..+++.+..++..+...+..+..++..++..
T Consensus 276 ~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 352 (1179)
T TIGR02168 276 VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE 352 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444555555555555544444444444444444443
No 36
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.20 E-value=0.81 Score=59.18 Aligned_cols=25 Identities=8% Similarity=-0.101 Sum_probs=12.6
Q ss_pred hhHHHHHHHhhhhhhHhhHhhhhcc
Q psy5718 543 EFTVARLYISKMKWRNGETVKEDEQ 567 (720)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (720)
+..-++-.+..+++.+..+..-+..
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~~~ 959 (1311)
T TIGR00606 935 SNKKAQDKVNDIKEKVKNIHGYMKD 959 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555544443
No 37
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=97.19 E-value=3.1e-05 Score=90.33 Aligned_cols=76 Identities=38% Similarity=0.424 Sum_probs=64.0
Q ss_pred hhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccceeeeeeccCCcccccCCCcccchHHhhhhccCCccccCc
Q psy5718 140 EGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG 219 (720)
Q Consensus 140 ~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V 219 (720)
.....+..++++.|.+++++|++|..+....+....... ++.|||||+||. -+...|.++++..++|++|..+|.+
T Consensus 486 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~---~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~ 561 (568)
T COG5059 486 KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSSTKELS---LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDV 561 (568)
T ss_pred hhccchhhcccchhhhhcccchhhhhcccchhhhhHHHH---hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhh
Confidence 457788889999999999999999888755443322222 799999999999 8888999999999999999999988
No 38
>PRK03918 chromosome segregation protein; Provisional
Probab=97.14 E-value=1.2 Score=54.90 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q psy5718 487 TTSTELQQIKDMSNHQKKRINE 508 (720)
Q Consensus 487 ~l~~el~~l~~~~~~~~kr~~e 508 (720)
.+..++..++.-...-+.++.+
T Consensus 402 ~l~~~i~~l~~~~~~~~~~i~e 423 (880)
T PRK03918 402 EIEEEISKITARIGELKKEIKE 423 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 39
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.14 E-value=0.57 Score=59.83 Aligned_cols=92 Identities=25% Similarity=0.397 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 420 RDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMS 499 (720)
Q Consensus 420 ~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~ 499 (720)
...+.++.++..++.+.......+.++...++++.........++......+..+..+...+...+..+..++.+++...
T Consensus 828 ~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 907 (1163)
T COG1196 828 QEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEI 907 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555556666666666666666666666677777777777777788888888888888888
Q ss_pred hHHHHHHHHHHH
Q psy5718 500 NHQKKRINEMLT 511 (720)
Q Consensus 500 ~~~~kr~~e~~~ 511 (720)
..+..+++.+..
T Consensus 908 ~~~~~~~~~l~~ 919 (1163)
T COG1196 908 EKLRERLEELEA 919 (1163)
T ss_pred HHHHHHHHHHHH
Confidence 888888776533
No 40
>PRK11637 AmiB activator; Provisional
Probab=97.07 E-value=0.036 Score=62.86 Aligned_cols=48 Identities=6% Similarity=0.214 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5718 467 KNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLL 514 (720)
Q Consensus 467 ~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~ 514 (720)
...++..+..++......+..++.++.++++-...+++.+...+..+-
T Consensus 87 ~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y 134 (428)
T PRK11637 87 ASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAF 134 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555555555555555555555444444333
No 41
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.07 E-value=0.48 Score=59.79 Aligned_cols=10 Identities=40% Similarity=0.388 Sum_probs=4.8
Q ss_pred HHHHHHhhhh
Q psy5718 546 VARLYISKMK 555 (720)
Q Consensus 546 ~~~~~~~~~~ 555 (720)
.|+-+|.-+|
T Consensus 559 ~a~~~i~~l~ 568 (1164)
T TIGR02169 559 VAKEAIELLK 568 (1164)
T ss_pred HHHHHHHHHH
Confidence 3555554433
No 42
>PRK03918 chromosome segregation protein; Provisional
Probab=97.06 E-value=0.51 Score=58.14 Aligned_cols=20 Identities=10% Similarity=0.227 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q psy5718 619 RLYQQLDEKDEEINQQSQYA 638 (720)
Q Consensus 619 ~~~~q~~~lrdei~~k~~~~ 638 (720)
.+..+++.|+++|..-...+
T Consensus 456 ~~~~ei~~l~~~~~~l~~~~ 475 (880)
T PRK03918 456 EYTAELKRIEKELKEIEEKE 475 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 43
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.06 E-value=0.54 Score=59.36 Aligned_cols=6 Identities=33% Similarity=0.617 Sum_probs=2.7
Q ss_pred ecCCCC
Q psy5718 62 VFKPNA 67 (720)
Q Consensus 62 VF~~~a 67 (720)
|+||+.
T Consensus 28 i~G~NG 33 (1164)
T TIGR02169 28 ISGPNG 33 (1164)
T ss_pred EECCCC
Confidence 445543
No 44
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.05 E-value=0.19 Score=64.05 Aligned_cols=11 Identities=0% Similarity=-0.025 Sum_probs=6.0
Q ss_pred eeEEEEEEEee
Q psy5718 160 HSVFLINVKQE 170 (720)
Q Consensus 160 H~IftI~v~q~ 170 (720)
+|=++|++.-.
T Consensus 77 ~A~V~l~fdN~ 87 (1163)
T COG1196 77 YAEVELTFDNS 87 (1163)
T ss_pred ceEEEEEEeCC
Confidence 45566665443
No 45
>KOG0977|consensus
Probab=97.01 E-value=0.22 Score=57.68 Aligned_cols=250 Identities=16% Similarity=0.193 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhh
Q psy5718 382 LITTARRDYEQLQGEMTRLTQENESAKEEV---KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYD 458 (720)
Q Consensus 382 ~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~---eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d 458 (720)
...+..+....++.+|.+...+++.++..+ ......++.+...+...++.++.+..-++...+.++-.+..|..+-.
T Consensus 100 ~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~ 179 (546)
T KOG0977|consen 100 LLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENS 179 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444445555555555555544 22344555555555666666666666666666665555554444433
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhhhhcCCCcccccCCccc
Q psy5718 459 QKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAG 538 (720)
Q Consensus 459 ~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~~~~~~~~~~~~~~~~~ 538 (720)
.--.++...++++++=..--...++...+|-.+|+-++ ...+..|.|.....-+|.. +.+
T Consensus 180 rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~---~~h~~eI~e~~~~~~rd~t------~~~----------- 239 (546)
T KOG0977|consen 180 RLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK---RIHKQEIEEERRKARRDTT------ADN----------- 239 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---hccHHHHHHHHHHHhhccc------ccc-----------
Confidence 33333333333333222222233344444444443333 3344667777666666663 111
Q ss_pred cchhhhH-HHHHHHhhhhhhHhhHhhhhcc-cc--cchhHHHHhh--------------hCCCCCCcchhhcccCccccc
Q psy5718 539 KLEEEFT-VARLYISKMKWRNGETVKEDEQ-VN--LADPVDMAAS--------------IAPTPESAPASILPAIPGSGL 600 (720)
Q Consensus 539 ~~e~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 600 (720)
-++|- =..+=|-.|+.+-...+.+.+. +| ....++++.. .-+..-..++.|=++|..-|.
T Consensus 240 --r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~ 317 (546)
T KOG0977|consen 240 --REYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELES 317 (546)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccc
Confidence 11111 0122344555555555555544 22 1122222220 001111223333233322222
Q ss_pred cccccchHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccccccc
Q psy5718 601 MLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQ 659 (720)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~q~~~lrdei~~k~~~~~~l~~~~~~~~~~~~~~~~~~ 659 (720)
. ......++++++-.|......-...++.|...|.+++.+ .+.-+..|+.|.-
T Consensus 318 ~----n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mRee--c~~l~~Elq~LlD 370 (546)
T KOG0977|consen 318 R----NSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREE--CQQLSVELQKLLD 370 (546)
T ss_pred c----ChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHH--HHHHHHHHHHhhc
Confidence 2 222234455555555555556777788888888888888 6666666666643
No 46
>KOG0996|consensus
Probab=96.95 E-value=0.92 Score=56.14 Aligned_cols=79 Identities=24% Similarity=0.336 Sum_probs=42.1
Q ss_pred HHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5718 436 NESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLK 515 (720)
Q Consensus 436 ~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~ 515 (720)
+.++.+..+|--.++-.+........+++.++.+++..+..+..++...++.+.++++.++...+..+.| .+++..|++
T Consensus 530 L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~-~kVl~al~r 608 (1293)
T KOG0996|consen 530 LLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSR-NKVLDALMR 608 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHH
Confidence 3333333333333344444444444455555555555555555555666666666666666655555555 556666664
No 47
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.77 E-value=2.1 Score=52.16 Aligned_cols=96 Identities=16% Similarity=0.204 Sum_probs=55.7
Q ss_pred HHHHHhhhhhhHhhHhhhhcccc------------cchhHHHHhhhCCCCCCcchhhcccCccccccccccchHHhhhHH
Q psy5718 547 ARLYISKMKWRNGETVKEDEQVN------------LADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLE 614 (720)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (720)
+++=+++=++|.-.+..++..++ |.+.+...++.+..|...+|+|=.+|-....+|.- .......++
T Consensus 292 ~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~k-k~~~~~~~q 370 (775)
T PF10174_consen 292 LKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEK-KQAQIEKLQ 370 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 44555555666666766665544 67888888999999999999984444332322111 111112333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy5718 615 EERERLYQQLDEKDEEINQQSQYAEKLKE 643 (720)
Q Consensus 615 ~~~~~~~~q~~~lrdei~~k~~~~~~l~~ 643 (720)
+-++.+.-.+..++|.++-+...|.+|..
T Consensus 371 eE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~ 399 (775)
T PF10174_consen 371 EEKSRLQGEIEDLRDMLDKKERKINVLQK 399 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555565666666666666644433
No 48
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.58 E-value=0.86 Score=49.22 Aligned_cols=89 Identities=21% Similarity=0.306 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhh----hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 410 EVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQK----SQEVETKNKEFETLTEELTLKQTTL 485 (720)
Q Consensus 410 q~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~----~~e~e~~~~e~~~l~~el~~~~~~~ 485 (720)
...+.+...+..+..++.++..|+..+.+++..+.++.+.+..-...|... -.++...+.+++....+...+...-
T Consensus 213 ~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K 292 (312)
T PF00038_consen 213 SAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVK 292 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 335556666777777777777777777777777777766665433333322 2223333444444444444444555
Q ss_pred HHHHHHHHHHHHH
Q psy5718 486 NTTSTELQQIKDM 498 (720)
Q Consensus 486 ~~l~~el~~l~~~ 498 (720)
.+|+.|+..-+.+
T Consensus 293 ~~Ld~EIatYR~L 305 (312)
T PF00038_consen 293 LALDAEIATYRKL 305 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHH
Confidence 5555555544443
No 49
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.55 E-value=1.2 Score=48.03 Aligned_cols=88 Identities=20% Similarity=0.252 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhhhhcCCCcccccCCccccc
Q psy5718 461 SQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKL 540 (720)
Q Consensus 461 ~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~~~~~~~~~~~~~~~~~~~ 540 (720)
.+.+......+..+.+|+......+.+|+.+++.|+.....-.++|.++...+-.++.++...|+.-
T Consensus 201 ~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~l------------- 267 (312)
T PF00038_consen 201 RQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAEL------------- 267 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred cccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhcc-------------
Confidence 3334455677888888999999999999999999999999999999998888888888888877554
Q ss_pred hhhhHHHHHHHhhhhhhHhhH
Q psy5718 541 EEEFTVARLYISKMKWRNGET 561 (720)
Q Consensus 541 e~~~~~~~~~~~~~~~~~~~~ 561 (720)
|.|..-+|-=|..+-.|...|
T Consensus 268 e~el~~l~~~~~~~~~ey~~L 288 (312)
T PF00038_consen 268 EEELAELREEMARQLREYQEL 288 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHH
Confidence 555554444444444444444
No 50
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.54 E-value=4.5 Score=52.52 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=38.9
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHhHHhhh
Q psy5718 447 LQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINE---MLTNLLKDLCEIGLV 523 (720)
Q Consensus 447 ~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e---~~~~l~~dl~e~~~~ 523 (720)
++....+....++...++++...++..+..++......+..+..++.+++......-..... .+...+.+|..+...
T Consensus 880 l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 959 (1311)
T TIGR00606 880 LQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKD 959 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555555555555566666666666655543333233322 234444444444444
Q ss_pred h
Q psy5718 524 I 524 (720)
Q Consensus 524 ~ 524 (720)
|
T Consensus 960 i 960 (1311)
T TIGR00606 960 I 960 (1311)
T ss_pred H
Confidence 4
No 51
>KOG4674|consensus
Probab=96.53 E-value=3.7 Score=53.65 Aligned_cols=107 Identities=17% Similarity=0.166 Sum_probs=59.2
Q ss_pred cchhHHHHhhhCCCCCCcchhhcccCcccc-------------ccccc-------c--chHHhhhHHHHHHHHHHHHHHH
Q psy5718 570 LADPVDMAASIAPTPESAPASILPAIPGSG-------------LMLGS-------L--SNEERQKLEEERERLYQQLDEK 627 (720)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~-------~--~~~~~~~~~~~~~~~~~q~~~l 627 (720)
.+|.+..+++.+..+++.++..|..|.+.- .|+.. + -+-.+.++-..+..+.+|++.+
T Consensus 324 ~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~~~~~~s~~~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~ 403 (1822)
T KOG4674|consen 324 NTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSATGESSMVSEKAALASSLIRPGSSLTKLYSKYSKLQQQLESL 403 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcccchhhhHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777766544443110 01000 0 0001122222566788899888
Q ss_pred HHHHHHHhHHHHHHHHH-------HHH--HHhhhcccccccchhHHHHHHhhhccchH
Q psy5718 628 DEEINQQSQYAEKLKEQ-------IME--QEEVSGLLVCGQTNERREQARKDLKGLED 676 (720)
Q Consensus 628 rdei~~k~~~~~~l~~~-------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (720)
--||..++..+.-.+.+ +.+ -+=.+-=..+..+++.++.+.+++.++|.
T Consensus 404 ~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~ 461 (1822)
T KOG4674|consen 404 KLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEK 461 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999998888222221 001 11111223455677788888888888875
No 52
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.52 E-value=0.14 Score=60.36 Aligned_cols=165 Identities=27% Similarity=0.384 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH-------HHHHHHHHHHHhhHHHHHHHHHHHHHHH---
Q psy5718 391 EQLQGEMTRLTQENESAKEEV------KELITTARRDYEQLQ-------GEMTRLTQENESAKEEVKEVLQALEELA--- 454 (720)
Q Consensus 391 ~ql~~Ei~~~~q~~ekLkeq~------eell~~~~~~~e~lq-------~el~~lq~e~~~~keevke~~qaleel~--- 454 (720)
+++..++++.....+.+.+++ -+++.......++|+ +.+..|+.+-+..+..+.+-...|++..
T Consensus 359 ~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~ 438 (594)
T PF05667_consen 359 KQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNR 438 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 334444444444444444333 334444444444444 3556666666666655555555555432
Q ss_pred -hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHhHHhhhhcCCCccc
Q psy5718 455 -VNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDM--SNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMK 531 (720)
Q Consensus 455 -~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~--~~~~~kr~~e~~~~l~~dl~e~~~~~~~~~~~~ 531 (720)
..+-++-++++..+.++..+..|+..|......|..+++.+-.. -....+||.||..|+=|=-.||-.|+.....+.
T Consensus 439 ~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQ 518 (594)
T PF05667_consen 439 ESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQ 518 (594)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33446667788899999999999999999999999999998776 456678999999999999999999997642221
Q ss_pred c-cCCccccchhhhHHH-HHHHhhhh
Q psy5718 532 V-TSDGAGKLEEEFTVA-RLYISKMK 555 (720)
Q Consensus 532 ~-~~~~~~~~e~~~~~~-~~~~~~~~ 555 (720)
. .-..+|+++.-|||+ -+.+...|
T Consensus 519 keiN~l~gkL~RtF~v~dElifrdAK 544 (594)
T PF05667_consen 519 KEINSLTGKLDRTFTVTDELIFRDAK 544 (594)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 1 124569999999987 34444444
No 53
>PRK09039 hypothetical protein; Validated
Probab=96.49 E-value=0.23 Score=54.88 Aligned_cols=109 Identities=17% Similarity=0.232 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 412 KELITTARRDYEQLQGEMTRLTQE-------NESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTT 484 (720)
Q Consensus 412 eell~~~~~~~e~lq~el~~lq~e-------~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~ 484 (720)
++.+...+..|+.++.+-.+|+.- ...++.....+..+|.+....|.+..-.|.-++.+++.|+..|+.+.+.
T Consensus 80 ~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~ 159 (343)
T PRK09039 80 QDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAA 159 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444432 2233444556667788888888888888888899999999888888888
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHH
Q psy5718 485 LNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEI 520 (720)
Q Consensus 485 ~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~ 520 (720)
+.+.+.+....+.....-+.+|...+..-.++|..+
T Consensus 160 L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~ 195 (343)
T PRK09039 160 LDASEKRDRESQAKIADLGRRLNVALAQRVQELNRY 195 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888887777888888776666666555
No 54
>KOG0250|consensus
Probab=96.44 E-value=0.76 Score=56.57 Aligned_cols=106 Identities=25% Similarity=0.334 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 412 KELITTARRDYEQLQGEMTRLTQENESAKEEV-KEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTST 490 (720)
Q Consensus 412 eell~~~~~~~e~lq~el~~lq~e~~~~keev-ke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~ 490 (720)
++.+..+..++.++..++..+.......+++. +++--.+++.+..+.+-.++|+...-.+..|++++.........-+.
T Consensus 357 ~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~e 436 (1074)
T KOG0250|consen 357 KEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEE 436 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 44444555555666666666666666666666 67777778888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy5718 491 ELQQIKDMSNHQKKRINEMLTNLLKDLC 518 (720)
Q Consensus 491 el~~l~~~~~~~~kr~~e~~~~l~~dl~ 518 (720)
|...++....+.+|+|..+ +.-|+||.
T Consensus 437 e~~~i~~~i~~l~k~i~~~-~~~l~~lk 463 (1074)
T KOG0250|consen 437 EKEHIEGEILQLRKKIENI-SEELKDLK 463 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 8888888888888888763 44445543
No 55
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.30 E-value=1.1 Score=48.50 Aligned_cols=107 Identities=21% Similarity=0.221 Sum_probs=52.5
Q ss_pred HHHHhHHHHHHHhcc-c--ccc--chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccccccccccCCC
Q psy5718 255 EEHKKAIEYEKELGE-T--RLL--LQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDG 329 (720)
Q Consensus 255 ~ETlsTL~fa~rak~-I--kn~--~~vN~~~~~~~~~Lk~ei~~Lk~EL~~l~nlrk~~~qdl~~r~g~~~~~~e~~~~~ 329 (720)
+|.=.-|.+|+++-+ + +|. ...|...+.....-...|..|+.+|....+|.+.+..+-......+.... +....
T Consensus 72 eEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~-~~~~~ 150 (306)
T PF04849_consen 72 EEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSEST-PLRRN 150 (306)
T ss_pred HHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCc-ccccc
Confidence 344455666666522 1 111 12233555666777777888888887766665555443322111111100 00000
Q ss_pred CchHHHhHHHHHhhhhHHHHHHHHHHHhhhhcccccc
Q psy5718 330 GSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCEL 366 (720)
Q Consensus 330 ~~~~~~qki~~le~~Le~L~~~~~qLv~dn~~l~~el 366 (720)
.+....+ --.+++.|+...+.|-.+|..++.+.
T Consensus 151 ~~~~~~~----~~~~le~Lq~Klk~LEeEN~~LR~Ea 183 (306)
T PF04849_consen 151 ESSLSSQ----KCIQLEALQEKLKSLEEENEQLRSEA 183 (306)
T ss_pred ccccccc----cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000011 23456677777777777888777765
No 56
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.17 E-value=4 Score=48.20 Aligned_cols=168 Identities=13% Similarity=0.177 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhhHHHHHHHHHH
Q psy5718 380 VKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQE----------NESAKEEVKEVLQA 449 (720)
Q Consensus 380 ~k~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e----------~~~~keevke~~qa 449 (720)
....+.+..+|..+..|+.... .+++....+...+..++.....+..++.++++. .....+++.++...
T Consensus 285 ~~i~~~Id~Lyd~lekE~~A~~-~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~ 363 (569)
T PRK04778 285 EEIQERIDQLYDILEREVKARK-YVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQ 363 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHH
Confidence 3455566777777777665443 355555666777777777777888888888777 45555555555555
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhhhhcCCCc
Q psy5718 450 LEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGD 529 (720)
Q Consensus 450 leel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~~~~~~~~ 529 (720)
+..+......+.........+.+.+.+.+.........+...++.|+.....-++++.. +-+.|+++...+-..
T Consensus 364 ~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~----~~~~L~~ikr~l~k~-- 437 (569)
T PRK04778 364 YDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLER----YRNKLHEIKRYLEKS-- 437 (569)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHc--
Confidence 55555555555555555666666666666666666666666666666665555555544 334556666665433
Q ss_pred ccccCCccccchhhhHHHHHHHhhhhh
Q psy5718 530 MKVTSDGAGKLEEEFTVARLYISKMKW 556 (720)
Q Consensus 530 ~~~~~~~~~~~e~~~~~~~~~~~~~~~ 556 (720)
..|.+....-.-|..+.=.|..++.
T Consensus 438 --~lpgip~~y~~~~~~~~~~i~~l~~ 462 (569)
T PRK04778 438 --NLPGLPEDYLEMFFEVSDEIEALAE 462 (569)
T ss_pred --CCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 1333333444445555444444433
No 57
>KOG1029|consensus
Probab=96.14 E-value=2 Score=51.09 Aligned_cols=28 Identities=7% Similarity=-0.094 Sum_probs=20.2
Q ss_pred hhhhHHHHHHHhhhhhhHhhHhhhhccc
Q psy5718 541 EEEFTVARLYISKMKWRNGETVKEDEQV 568 (720)
Q Consensus 541 e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (720)
-++....+-.+.-|-+|.+.++.|-+-+
T Consensus 471 kt~ie~~~~q~e~~isei~qlqarikE~ 498 (1118)
T KOG1029|consen 471 KTEIEEVTKQRELMISEIDQLQARIKEL 498 (1118)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3455566777788888888888887643
No 58
>KOG0977|consensus
Probab=96.13 E-value=2.4 Score=49.40 Aligned_cols=140 Identities=19% Similarity=0.266 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhh------------------------
Q psy5718 387 RRDYEQLQGEMTRLTQENESAKEEVKELIT---TARRDYEQLQGEMTRLTQENESA------------------------ 439 (720)
Q Consensus 387 ~~l~~ql~~Ei~~~~q~~ekLkeq~eell~---~~~~~~e~lq~el~~lq~e~~~~------------------------ 439 (720)
.+.++.+.++...+..++.+|-.++..... ......-++|..+..|.++++-.
T Consensus 161 krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r 240 (546)
T KOG0977|consen 161 KRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNR 240 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccch
Confidence 444556666666666666666666622222 11111123344444443333333
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHH----H-HHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5718 440 KEEVKEVLQALEELAVNYDQKSQEVET----K-NKEFETLT--------------EELTLKQTTLNTTSTELQQIKDMSN 500 (720)
Q Consensus 440 keevke~~qaleel~~n~d~~~~e~e~----~-~~e~~~l~--------------~el~~~~~~~~~l~~el~~l~~~~~ 500 (720)
...-.++-+|+.++-..||..+..-.. . .++++.++ +|+...-..+..|.+.|++|...+.
T Consensus 241 ~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~ 320 (546)
T KOG0977|consen 241 EYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNS 320 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccCh
Confidence 333458889999999999988766222 2 44455444 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhcC
Q psy5718 501 HQKKRINEMLTNLLKDLCEIGLVIGS 526 (720)
Q Consensus 501 ~~~kr~~e~~~~l~~dl~e~~~~~~~ 526 (720)
.--++|.++-..|=.|.-=+...+..
T Consensus 321 ~L~~~I~dL~~ql~e~~r~~e~~L~~ 346 (546)
T KOG0977|consen 321 ALEKRIEDLEYQLDEDQRSFEQALND 346 (546)
T ss_pred hHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 99999999666665655555555533
No 59
>KOG0933|consensus
Probab=96.04 E-value=2.1 Score=52.35 Aligned_cols=123 Identities=17% Similarity=0.259 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhH
Q psy5718 383 ITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQ 462 (720)
Q Consensus 383 ~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~ 462 (720)
.+....+|+.++-|.++..++....+.++.++... .+.+-.++..+.....++..+++.+++.|.+...+..+-..
T Consensus 810 ~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~----~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt 885 (1174)
T KOG0933|consen 810 LEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQ----ISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDT 885 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhH
Confidence 33444555555555555555555555555444333 34455666666666666667777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5718 463 EVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEM 509 (720)
Q Consensus 463 e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~ 509 (720)
++...-...+....+.+...-...-|.-|+..++.-.+.-+|++..+
T Consensus 886 ~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l 932 (1174)
T KOG0933|consen 886 EISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKL 932 (1174)
T ss_pred HHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHH
Confidence 77666666666666666666666777777777777777777775553
No 60
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.00 E-value=0.0018 Score=77.99 Aligned_cols=122 Identities=16% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhHhhHhhhhccc------ccchhHHHHhhhCCCCCCcchhh---cccCccccccccccch---HHhhhHH
Q psy5718 547 ARLYISKMKWRNGETVKEDEQV------NLADPVDMAASIAPTPESAPASI---LPAIPGSGLMLGSLSN---EERQKLE 614 (720)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~ 614 (720)
.|.=|.++..|.|.|-.+.... .|...+......+..|+...... +..|+++- ..+.+ +.....+
T Consensus 457 l~erl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~ql---e~lq~~l~~~~~~~~ 533 (713)
T PF05622_consen 457 LRERLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREANEKILELQSQL---EELQKSLQEQGSKSE 533 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhcc
Confidence 4555677888888884433222 36777777777778888777665 44443221 11110 1111121
Q ss_pred ---HHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHh-hhcccccccchhHHHHHHhhhccchH
Q psy5718 615 ---EERERLYQQLD---EKDEEINQQSQYAEKLKEQIMEQEE-VSGLLVCGQTNERREQARKDLKGLED 676 (720)
Q Consensus 615 ---~~~~~~~~q~~---~lrdei~~k~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (720)
..+..|+.+++ .+++++..+...|+.+.++ -... ..++.+|...-.+++ +|++.+|+
T Consensus 534 d~~~lk~~le~~~~~l~e~~~e~~~~~~~le~l~~~--~~~~~~~ki~~Le~~L~~k~---~e~~~~ee 597 (713)
T PF05622_consen 534 DSSELKQKLEEHLEKLRELKDELQKKREQLEELEQE--LNQSLSQKIEELEEALQKKE---EEMRAMEE 597 (713)
T ss_dssp ---------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHhH---HHHHhHHH
Confidence 25566666666 4556666666666655554 2222 334444433333333 35666665
No 61
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.96 E-value=2.6 Score=44.12 Aligned_cols=151 Identities=16% Similarity=0.257 Sum_probs=69.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy5718 369 LEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQ 448 (720)
Q Consensus 369 ~~~~~~~~~Er~k~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~q 448 (720)
++.+.....+++..++......+..-++..+-..++..-...++..+..+....+.+...+..|..++......++.+..
T Consensus 83 lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~ 162 (237)
T PF00261_consen 83 LENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEA 162 (237)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhh
Confidence 34444555555555555555555544455555555544444444445444555555555555555555555555554444
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHhH
Q psy5718 449 ALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINE---MLTNLLKDLCE 519 (720)
Q Consensus 449 aleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e---~~~~l~~dl~e 519 (720)
+.+.....-+.....+..+...+................|+.++..|.+-....|.+... -|...|.||++
T Consensus 163 ~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el~~ 236 (237)
T PF00261_consen 163 SEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNELNE 236 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 444332222222222222222222222222233344555555555555554444444444 34444555544
No 62
>PRK11637 AmiB activator; Provisional
Probab=95.91 E-value=4.2 Score=46.19 Aligned_cols=22 Identities=14% Similarity=0.135 Sum_probs=10.2
Q ss_pred hHHHHHhhhhHHHHHHHHHHHh
Q psy5718 336 QKISFLENNLDQLTKVHKQLVR 357 (720)
Q Consensus 336 qki~~le~~Le~L~~~~~qLv~ 357 (720)
..|..++..++...+...++++
T Consensus 110 ~eI~~~q~~l~~~~~~l~~rlr 131 (428)
T PRK11637 110 ASIAKLEQQQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 63
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=95.89 E-value=0.91 Score=44.83 Aligned_cols=130 Identities=24% Similarity=0.349 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHHHhhhhhhhHH------
Q psy5718 397 MTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKE-------VLQALEELAVNYDQKSQE------ 463 (720)
Q Consensus 397 i~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke-------~~qaleel~~n~d~~~~e------ 463 (720)
++..-..++.=|+++-+...+++.+++.++.+|..++.+....-++|.. ..+.|.+...||+..+.+
T Consensus 4 i~~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AY 83 (159)
T PF05384_consen 4 IKKTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAY 83 (159)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHH
Confidence 3344455566667777777777777777777777777777666666654 445677778888776654
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHhHHhhhhcC
Q psy5718 464 --VETKNKEFETLTEELTLKQTTLNTTSTELQQIKDM---SNHQKKRINEMLTNLLKDLCEIGLVIGS 526 (720)
Q Consensus 464 --~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~---~~~~~kr~~e~~~~l~~dl~e~~~~~~~ 526 (720)
+.+...++..++++-.++...-+.|+..|.+++++ ..+---+|.=+|+-|--||+.+|..+.+
T Consensus 84 e~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~ 151 (159)
T PF05384_consen 84 EEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIED 151 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 56667788888888888889999999999999888 4455567777888888999999988765
No 64
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.89 E-value=2.5 Score=43.34 Aligned_cols=87 Identities=21% Similarity=0.368 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy5718 381 KLITTARRDYEQLQGEMTRLTQENESAKEEV------KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELA 454 (720)
Q Consensus 381 k~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~------eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~ 454 (720)
+...++....++|.+-+.....+++.|..++ ...+..++..+..++.++..|.-+++.+......+.+.-.+|.
T Consensus 48 k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 48 KLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666777777777777777777776 4445556666666777777777777777777777777777777
Q ss_pred hhhhhhhHHHHHH
Q psy5718 455 VNYDQKSQEVETK 467 (720)
Q Consensus 455 ~n~d~~~~e~e~~ 467 (720)
..|....++|..+
T Consensus 128 ~kf~~~i~evqQk 140 (201)
T PF13851_consen 128 RKFESAIQEVQQK 140 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777766
No 65
>KOG0976|consensus
Probab=95.85 E-value=0.95 Score=53.81 Aligned_cols=98 Identities=26% Similarity=0.314 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5718 422 YEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNH 501 (720)
Q Consensus 422 ~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~ 501 (720)
..++..+...||+-...+.++.++....||++-.....-.+++..+.-++....+.|-.+...++++..+++++-+-.+.
T Consensus 115 c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~ 194 (1265)
T KOG0976|consen 115 CLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANR 194 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHH
Confidence 34556677788888888888888888888888888888888999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHhH
Q psy5718 502 QKKRINEMLTNLLKDLCE 519 (720)
Q Consensus 502 ~~kr~~e~~~~l~~dl~e 519 (720)
.++-..+.+..+=-|+++
T Consensus 195 en~~le~k~~k~~e~~~~ 212 (1265)
T KOG0976|consen 195 EKKALEEKLEKFKEDLIE 212 (1265)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 888877777766666553
No 66
>KOG0996|consensus
Probab=95.84 E-value=6 Score=49.42 Aligned_cols=65 Identities=23% Similarity=0.329 Sum_probs=41.3
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5718 450 LEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLL 514 (720)
Q Consensus 450 leel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~ 514 (720)
|......++++..++..+..++..+..|+.++...+..+..+..+++...+.-+.|+.|+-+++-
T Consensus 530 L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~ 594 (1293)
T KOG0996|consen 530 LLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLS 594 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444555566666666666666666677777777777777788889998776553
No 67
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.83 E-value=6.7 Score=47.90 Aligned_cols=137 Identities=20% Similarity=0.250 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 415 ITTARRDYEQLQGEMTRL--------TQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLN 486 (720)
Q Consensus 415 l~~~~~~~e~lq~el~~l--------q~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~ 486 (720)
+..+..++++++..+... +++.+..+.+++++...++.|...+..+...+...+-+...|..-.-.+
T Consensus 438 lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~----- 512 (775)
T PF10174_consen 438 LEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKK----- 512 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchh-----
Confidence 334455555555555444 2333333333444444444444333333333333333333333332233
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhhhhcCCCcccccCCccccchhhhHHHHHHHhhhhhhHhhHhhhhc
Q psy5718 487 TTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDE 566 (720)
Q Consensus 487 ~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (720)
.+++.+|.=....++.++..|.+-|-+ .-.+. + ...--+.+|.+.+-.|-=.++.+.||-.|...-+
T Consensus 513 --~s~i~~l~I~lEk~rek~~kl~~ql~k-------~~~~~-e---~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~ 579 (775)
T PF10174_consen 513 --DSEIERLEIELEKKREKHEKLEKQLEK-------LRANA-E---LRDRIQQLEQEVTRYREESEKAQAEVERLLDILR 579 (775)
T ss_pred --hhHHHHHHHHHHHhhhHHHHHHHHHHH-------HHhCH-h---hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444555565555555 11111 1 1123346777766666678888888888876655
Q ss_pred ccc
Q psy5718 567 QVN 569 (720)
Q Consensus 567 ~~~ 569 (720)
.++
T Consensus 580 ~~E 582 (775)
T PF10174_consen 580 EAE 582 (775)
T ss_pred HHH
Confidence 544
No 68
>KOG0971|consensus
Probab=95.80 E-value=2 Score=51.93 Aligned_cols=198 Identities=25% Similarity=0.377 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccccccccccCCCCchHHHhHHHHHhhhhHHHHHHHHHHHhhhhcccc
Q psy5718 285 KDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRC 364 (720)
Q Consensus 285 ~~Lk~ei~~Lk~EL~~l~nlrk~~~qdl~~r~g~~~~~~e~~~~~~~~~~~qki~~le~~Le~L~~~~~qLv~dn~~l~~ 364 (720)
..|+.++..|.++|+.+ |.+..- +.......+|+ .-.+++++.+-.+++..-++|+.
T Consensus 227 ~eLr~QvrdLtEkLetl-------------R~kR~E-------Dk~Kl~Elekm---kiqleqlqEfkSkim~qqa~Lqr 283 (1243)
T KOG0971|consen 227 EELRAQVRDLTEKLETL-------------RLKRAE-------DKAKLKELEKM---KIQLEQLQEFKSKIMEQQADLQR 283 (1243)
T ss_pred HHHHHHHHHHHHHHHHH-------------Hhhhhh-------hHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44999999999999999 665431 11111112222 23456777777777777677666
Q ss_pred cchhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy5718 365 ELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVK 444 (720)
Q Consensus 365 elp~~~~~~~~~~Er~k~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevk 444 (720)
++. ++--|. +-.-++...|++.++++..-..++ .-|-|=...+...||.|.++++|.+.
T Consensus 284 el~------raR~e~-keaqe~ke~~k~emad~ad~iEma--------------TldKEmAEERaesLQ~eve~lkEr~d 342 (1243)
T KOG0971|consen 284 ELK------RARKEA-KEAQEAKERYKEEMADTADAIEMA--------------TLDKEMAEERAESLQQEVEALKERVD 342 (1243)
T ss_pred HHH------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH--------------HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 541 111111 111111222222222222222222 22222223333444444444444444
Q ss_pred HHHHHHHHHHhhhh--------hhhHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhHH
Q psy5718 445 EVLQALEELAVNYD--------QKSQEVETKNKEFETLTEELT--------------LKQTTLNTTSTELQQIKDMSNHQ 502 (720)
Q Consensus 445 e~~qaleel~~n~d--------~~~~e~e~~~~e~~~l~~el~--------------~~~~~~~~l~~el~~l~~~~~~~ 502 (720)
|+..-||=|+.... ..+=+...+...|..|.+-|- .....+.-..+|++.|+...+.-
T Consensus 343 eletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~L 422 (1243)
T KOG0971|consen 343 ELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERL 422 (1243)
T ss_pred HHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44444444433322 123334444444444544442 23355566667777777777666
Q ss_pred HHHHHHHHHHHHHHHhH-HhhhhcCC
Q psy5718 503 KKRINEMLTNLLKDLCE-IGLVIGSE 527 (720)
Q Consensus 503 ~kr~~e~~~~l~~dl~e-~~~~~~~~ 527 (720)
++++.. +.+.+-||-| |-.++|..
T Consensus 423 sr~~d~-aEs~iadlkEQVDAAlGAE 447 (1243)
T KOG0971|consen 423 SRELDQ-AESTIADLKEQVDAALGAE 447 (1243)
T ss_pred HHHHHH-HHHHHHHHHHHHHHhhcHH
Confidence 666555 5666677776 33444544
No 69
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.75 E-value=4.6 Score=48.79 Aligned_cols=94 Identities=18% Similarity=0.316 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH--------------H
Q psy5718 418 ARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQ--------------T 483 (720)
Q Consensus 418 ~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~--------------~ 483 (720)
.+.....+..|+.+|+.|+...+|.+..++..+.+|-.--.+..++.|.+--.+..+.++=..+. .
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfs 622 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFS 622 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34444566788888888888888888888877765543213334455555555555544443332 4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy5718 484 TLNTTSTELQQIKDMSNHQKKRINEMLT 511 (720)
Q Consensus 484 ~~~~l~~el~~l~~~~~~~~kr~~e~~~ 511 (720)
.|-+..++++-++...-.+-+=|.||=.
T Consensus 623 aLg~akrq~ei~~~~~~~~d~ei~~lk~ 650 (697)
T PF09726_consen 623 ALGDAKRQLEIAQGQLRKKDKEIEELKA 650 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666655555555555555333
No 70
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.74 E-value=1.2 Score=53.03 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy5718 467 KNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINE 508 (720)
Q Consensus 467 ~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e 508 (720)
+..+++.|..|+..+...+.+.-.+.+.|-.....+..||.+
T Consensus 85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~E 126 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAE 126 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444434444444444455555555
No 71
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.65 E-value=4.3 Score=44.38 Aligned_cols=121 Identities=20% Similarity=0.290 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q psy5718 397 MTRLTQENESAKEEVKELITTARRDYEQLQGEMTRL----TQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFE 472 (720)
Q Consensus 397 i~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~l----q~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~ 472 (720)
+....+.++.+...+.+.......+...+++....+ +++...++++++++.+.++.......+...++..+...++
T Consensus 163 L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~ 242 (312)
T smart00787 163 LMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIE 242 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555555555555555554 5578888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy5718 473 TLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLC 518 (720)
Q Consensus 473 ~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~ 518 (720)
...++..+....+.+++..+++.+..+.+.-.++..-. .+|..++
T Consensus 243 ~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~-~~Le~l~ 287 (312)
T smart00787 243 DLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQL-KLLQSLT 287 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHHHHHh
Confidence 88888888888888888877777777777777766633 3334443
No 72
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.52 E-value=7.6 Score=46.34 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=21.3
Q ss_pred HHhHHHHHhhhhHHHHHHHHHHHhhhhccc
Q psy5718 334 QRQKISFLENNLDQLTKVHKQLVRDNADLR 363 (720)
Q Consensus 334 ~~qki~~le~~Le~L~~~~~qLv~dn~~l~ 363 (720)
....+..|...++.|...+...+++|..+.
T Consensus 85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls 114 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQLQAQVENNEQLS 114 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677778888888888888877664
No 73
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.45 E-value=5.2 Score=43.93 Aligned_cols=89 Identities=22% Similarity=0.324 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 412 KELITTARRDYEQLQGEMTRLTQENE----SAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNT 487 (720)
Q Consensus 412 eell~~~~~~~e~lq~el~~lq~e~~----~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~ 487 (720)
.+++......+..|..++..|++... .-.+++..+.+.|.++......+.+.+.+++.+.+.+..++....+....
T Consensus 176 ~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~ 255 (325)
T PF08317_consen 176 DELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQE 255 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555544322 23344455555555555444455555555555555555555555555555
Q ss_pred HHHHHHHHHHHHh
Q psy5718 488 TSTELQQIKDMSN 500 (720)
Q Consensus 488 l~~el~~l~~~~~ 500 (720)
+..++++++...+
T Consensus 256 l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 256 LLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554433
No 74
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.42 E-value=12 Score=48.14 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=30.6
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy5718 447 LQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTN 512 (720)
Q Consensus 447 ~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~ 512 (720)
.+.++.+...+++..+++....+....+..++.+....-.....+|..++.--...+-++.++-..
T Consensus 468 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~ 533 (1201)
T PF12128_consen 468 KEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQ 533 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444444444444444444444445554444444444455554433
No 75
>KOG0612|consensus
Probab=95.38 E-value=2.2 Score=53.16 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=12.8
Q ss_pred ccchHhHHHHHHHhhhhHHHHH
Q psy5718 672 KGLEDTVTKELQTLHNLRKLFV 693 (720)
Q Consensus 672 ~~~~~tv~~el~~l~~l~~~~~ 693 (720)
+++|.-..+++-+|--+++.|-
T Consensus 789 ~~~Ekq~~~~~~~l~~~K~~~e 810 (1317)
T KOG0612|consen 789 KMLEKQLKKLLDELAELKKQLE 810 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666644443
No 76
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.35 E-value=14 Score=48.42 Aligned_cols=41 Identities=7% Similarity=0.004 Sum_probs=30.0
Q ss_pred HHhhhccchHhHHHHHHHhhhhHHHHHHHHHhhhhcCcccc
Q psy5718 667 ARKDLKGLEDTVTKELQTLHNLRKLFVQDQVTSSQRWPMAT 707 (720)
Q Consensus 667 ~~~~~~~~~~tv~~el~~l~~l~~~~~~~~~~~~~~~~~~~ 707 (720)
..+.|.++-++|+++|...=+==+=.|.++..-++.-+.++
T Consensus 1230 ~Er~L~~s~eEVa~~l~~rI~~a~~~V~~mN~~L~~i~f~~ 1270 (1486)
T PRK04863 1230 REQKLAISSESVANIIRKTIQREQNRIRMLNQGLQNISFGQ 1270 (1486)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 34446699999999998776666667788887777666644
No 77
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.29 E-value=5.9 Score=51.81 Aligned_cols=8 Identities=13% Similarity=0.418 Sum_probs=5.0
Q ss_pred Ceeeecce
Q psy5718 54 GKFYLFDK 61 (720)
Q Consensus 54 ~k~F~FD~ 61 (720)
+.+|.|+.
T Consensus 20 ~~~~~f~~ 27 (1486)
T PRK04863 20 ARTFDLDE 27 (1486)
T ss_pred ceEEEecC
Confidence 45677766
No 78
>KOG0250|consensus
Probab=95.11 E-value=13 Score=46.45 Aligned_cols=82 Identities=21% Similarity=0.409 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 416 TTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQK-SQEVETKNKEFETLTEELTLKQTTLNTTSTELQQ 494 (720)
Q Consensus 416 ~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~-~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~ 494 (720)
...++.+..+..+....+....+.|.+++.+.--+.++....++. ..+.++...+++.|..+.......+++|..|++.
T Consensus 347 ~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~ 426 (1074)
T KOG0250|consen 347 DDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNE 426 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555444444444433111 1122333333333333333333344444444444
Q ss_pred HHH
Q psy5718 495 IKD 497 (720)
Q Consensus 495 l~~ 497 (720)
+++
T Consensus 427 ~~~ 429 (1074)
T KOG0250|consen 427 VKE 429 (1074)
T ss_pred HHH
Confidence 433
No 79
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.01 E-value=9.6 Score=44.54 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=8.5
Q ss_pred ceeeeeeccCCcc
Q psy5718 180 GKLYLVDLAGSEK 192 (720)
Q Consensus 180 skL~lVDLAGSEr 192 (720)
-.++.||=.|+=+
T Consensus 90 YqfcYv~~~g~V~ 102 (546)
T PF07888_consen 90 YQFCYVDQKGEVR 102 (546)
T ss_pred EEEEEECCCccEE
Confidence 3567777777644
No 80
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.00 E-value=1.9 Score=51.64 Aligned_cols=38 Identities=21% Similarity=0.396 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy5718 415 ITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 452 (720)
Q Consensus 415 l~~~~~~~e~lq~el~~lq~e~~~~keevke~~qalee 452 (720)
+.......+.+..++..++.+.+.+...+.++.+++..
T Consensus 218 l~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~ 255 (650)
T TIGR03185 218 LKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRS 255 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555555555555555444
No 81
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.93 E-value=10 Score=44.43 Aligned_cols=32 Identities=16% Similarity=0.110 Sum_probs=20.3
Q ss_pred ccchhhhHHHHHHHhhhhhhHhhHhhhhcccc
Q psy5718 538 GKLEEEFTVARLYISKMKWRNGETVKEDEQVN 569 (720)
Q Consensus 538 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (720)
+.+..|+.-++.-+.+++.|+.+|-.-...|.
T Consensus 284 ~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~ 315 (522)
T PF05701_consen 284 ASAKKELEEAKKELEKAKEEASSLRASVESLR 315 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666677777777777766665554443
No 82
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.88 E-value=3 Score=45.72 Aligned_cols=110 Identities=14% Similarity=0.215 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q psy5718 399 RLTQENESAKEEVKELITTARRDYEQLQGEMTRL----TQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETL 474 (720)
Q Consensus 399 ~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~l----q~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l 474 (720)
...+.+..+..++.+..+....++..++.....+ +.+.++++.++.++...++++..+.++...+++.+..+++.+
T Consensus 170 ~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~ 249 (325)
T PF08317_consen 170 KQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEEL 249 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444555555555555555544433 567777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy5718 475 TEELTLKQTTLNTTSTELQQIKDMSNHQKKRINE 508 (720)
Q Consensus 475 ~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e 508 (720)
.++..+..+.+.+++.-++.-+-.+...-+++..
T Consensus 250 ~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~ 283 (325)
T PF08317_consen 250 EEQKQELLAEIAEAEKIREECRGWTRSEVKRLKA 283 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 7777777777777777777666665555555544
No 83
>KOG4643|consensus
Probab=94.79 E-value=14 Score=45.53 Aligned_cols=101 Identities=16% Similarity=0.231 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q psy5718 391 EQLQGEMTRLTQENESAKEEVKE---LITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETK 467 (720)
Q Consensus 391 ~ql~~Ei~~~~q~~ekLkeq~ee---ll~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~ 467 (720)
...+.++.+.....+++++|... -+.-.....+.|.+.+..+.+||..+-.+|.-+-+- ..--++++|..-..+-.
T Consensus 498 ~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t-~qn~~~LEq~~n~lE~~ 576 (1195)
T KOG4643|consen 498 NNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTT-SQNGALLEQNNNDLELI 576 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-hHHHHHHHHhhhHHHHH
Confidence 44455888888888999998833 334445566778889999999999999999887766 55566666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 468 NKEFETLTEELTLKQTTLNTTSTEL 492 (720)
Q Consensus 468 ~~e~~~l~~el~~~~~~~~~l~~el 492 (720)
..+...+.+-|.........|+.++
T Consensus 577 ~~elkk~idaL~alrrhke~LE~e~ 601 (1195)
T KOG4643|consen 577 HNELKKYIDALNALRRHKEKLEEEI 601 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666664
No 84
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.52 E-value=0.48 Score=48.74 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=35.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 456 NYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMS 499 (720)
Q Consensus 456 n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~ 499 (720)
.+++..+.+.++..+++.|.+++....+++.+++.++..+++..
T Consensus 126 ~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 126 KVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777899999999999999999999999998888743
No 85
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.43 E-value=4.9 Score=38.99 Aligned_cols=96 Identities=21% Similarity=0.342 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 412 KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTE 491 (720)
Q Consensus 412 eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~e 491 (720)
++.......++..|+..+..|..+.+.+.+.+.++..++++- +.....++.+++.++.|-++|......+..+...
T Consensus 27 e~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~----~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ek 102 (143)
T PF12718_consen 27 EQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEES----EKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEK 102 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455666677777777777777777766666653 2333456689999999999999999999999888
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q psy5718 492 LQQIKDMSNHQKKRINEMLT 511 (720)
Q Consensus 492 l~~l~~~~~~~~kr~~e~~~ 511 (720)
|.+..-...|--+++..+-.
T Consensus 103 l~e~d~~ae~~eRkv~~le~ 122 (143)
T PF12718_consen 103 LREADVKAEHFERKVKALEQ 122 (143)
T ss_pred HHHHHHHhHHHHHHHHHHHh
Confidence 88888887777777666544
No 86
>KOG0933|consensus
Probab=94.34 E-value=18 Score=44.74 Aligned_cols=143 Identities=15% Similarity=0.173 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-----------------------------HHHHhhhhhhhHH
Q psy5718 413 ELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL-----------------------------EELAVNYDQKSQE 463 (720)
Q Consensus 413 ell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qal-----------------------------eel~~n~d~~~~e 463 (720)
..+........++...+.....+.++.+++++++.++- .....+.+.-...
T Consensus 251 ~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k 330 (1174)
T KOG0933|consen 251 HEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEK 330 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 33344444556666667777777777777777766621 1122222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhhhhcCCCcccccCCccccchhh
Q psy5718 464 VETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEE 543 (720)
Q Consensus 464 ~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~~~~~~~~~~~~~~~~~~~e~~ 543 (720)
++...+.+..++.-|..+...++..+..++.+++..+...+=+++- =+++. .+-.+ ... .-+-.+-++.+
T Consensus 331 ~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~----e~~~e----slt~G-~Ss-~~~~e~~l~~q 400 (1174)
T KOG0933|consen 331 LEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKA----EELVE----SLTAG-LSS-NEDEEKTLEDQ 400 (1174)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH----HHHHH----HHhcc-ccc-CccchhhHHHH
Confidence 3344444444444444444444444444444444433333222110 01111 11111 100 11124568899
Q ss_pred hHHHHHHHhhhhhhHhhHhhhh
Q psy5718 544 FTVARLYISKMKWRNGETVKED 565 (720)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~ 565 (720)
.-.|+.-+|.+.++.|..--+-
T Consensus 401 l~~aK~~~~~~~t~~k~a~~k~ 422 (1174)
T KOG0933|consen 401 LRDAKITLSEASTEIKQAKLKL 422 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998765443
No 87
>KOG0980|consensus
Probab=94.29 E-value=17 Score=44.30 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 279 RREQARKDLKGLEDTVTKELQTL 301 (720)
Q Consensus 279 ~~~~~~~~Lk~ei~~Lk~EL~~l 301 (720)
..+..+..+..+++.++..+...
T Consensus 330 ~~~~~~~~~~~e~~~~~~~l~~~ 352 (980)
T KOG0980|consen 330 PRELQIEQLSREVAQLKAQLENL 352 (980)
T ss_pred hhhHHHHHHHHHHHHHhhhhhhH
Confidence 44455577777777777777655
No 88
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.27 E-value=14 Score=43.14 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=12.5
Q ss_pred HHhHHHHHhhhhHHHHHHHHHH
Q psy5718 334 QRQKISFLENNLDQLTKVHKQL 355 (720)
Q Consensus 334 ~~qki~~le~~Le~L~~~~~qL 355 (720)
....+..++.+++.+.+.....
T Consensus 260 l~~~~~~~~~~l~~~~~~~~~~ 281 (562)
T PHA02562 260 LNTAAAKIKSKIEQFQKVIKMY 281 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555666666666555544
No 89
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=94.15 E-value=2 Score=47.92 Aligned_cols=112 Identities=20% Similarity=0.365 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 412 KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTE 491 (720)
Q Consensus 412 eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~e 491 (720)
+..+..++..+++++.++.+--+...+-+.++ .+-|+.+-..|.+...++.+.+.++.+.+..+++++..++.+..+
T Consensus 233 ~~~~~~~~~~L~kl~~~i~~~lekI~sREk~i---N~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~Isee 309 (359)
T PF10498_consen 233 ESALPETKSQLDKLQQDISKTLEKIESREKYI---NNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEE 309 (359)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 44445555555566666655555555544444 335667777788888888888888888888888888888888888
Q ss_pred HHHHHHHHhHH---------HHHHHHHHHHHHHHHhHHhhhhcC
Q psy5718 492 LQQIKDMSNHQ---------KKRINEMLTNLLKDLCEIGLVIGS 526 (720)
Q Consensus 492 l~~l~~~~~~~---------~kr~~e~~~~l~~dl~e~~~~~~~ 526 (720)
|++.|...... --+|...++.|=.++.+|..-||-
T Consensus 310 Le~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIGV 353 (359)
T PF10498_consen 310 LEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIGV 353 (359)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhe
Confidence 88877654333 447889999999999999888874
No 90
>KOG0976|consensus
Probab=94.02 E-value=18 Score=43.59 Aligned_cols=59 Identities=20% Similarity=0.269 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy5718 424 QLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQ 482 (720)
Q Consensus 424 ~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~ 482 (720)
.+..+++.+-+|+...+-...+..+.|.+--..-|++++++-...---+.+.++..+++
T Consensus 180 ~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLs 238 (1265)
T KOG0976|consen 180 EFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLS 238 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555665555555666666666444557788776555444445555554444
No 91
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.88 E-value=8 Score=42.16 Aligned_cols=167 Identities=23% Similarity=0.289 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhh
Q psy5718 385 TARRDYEQLQGEMTRLTQENESAKEEV---KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKS 461 (720)
Q Consensus 385 e~~~l~~ql~~Ei~~~~q~~ekLkeq~---eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~ 461 (720)
.+..-.+.-+.|..+..--+++|+.|+ .+.+..+..+...+..-+.++.+||.-.+-.+.++.
T Consensus 89 ~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~-------------- 154 (401)
T PF06785_consen 89 KIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQ-------------- 154 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHH--------------
Confidence 333333444556777777788888888 778889999999998888999888877666555533
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHH---HHHHHHHHHHH-HhHHhhhhcCCCcccccCCc
Q psy5718 462 QEVETKNKEFETLTEELTLKQTTLNTTSTELQQ-IKDMSNHQKKR---INEMLTNLLKD-LCEIGLVIGSEGDMKVTSDG 536 (720)
Q Consensus 462 ~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~-l~~~~~~~~kr---~~e~~~~l~~d-l~e~~~~~~~~~~~~~~~~~ 536 (720)
++..+|..|.+.|.-||++..+.-..|..|.+. +-+..+--+|| |.. |.+=..| ++||...+....+.+-..+.
T Consensus 155 ~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~-LEsKVqDLm~EirnLLQle~~~~e~~p~ 233 (401)
T PF06785_consen 155 QECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGK-LESKVQDLMYEIRNLLQLESDMKESMPS 233 (401)
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhcCCC
Confidence 445556666667777766665555555544432 22223333444 444 3345667 48888888665222211111
Q ss_pred cccchhhhHHHHHHHhhhhhhHhhHhhhhcccccc
Q psy5718 537 AGKLEEEFTVARLYISKMKWRNGETVKEDEQVNLA 571 (720)
Q Consensus 537 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (720)
++-++++--...|-||.|..|-+....+..
T Consensus 234 -----~~~~~s~~v~~ql~selkkivf~~enie~A 263 (401)
T PF06785_consen 234 -----TPSPSSQDVPKQLVSELKKIVFKVENIEAA 263 (401)
T ss_pred -----CCcchhhhhHHHHHHHHHHHHHHHhhHHHH
Confidence 111445544478889999999999888833
No 92
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=93.86 E-value=11 Score=40.63 Aligned_cols=85 Identities=19% Similarity=0.329 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5718 421 DYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSN 500 (720)
Q Consensus 421 ~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~ 500 (720)
....+..++..|-.+...-.+++.+..+...++-..-|.-..++.+..+.+..+.++..+..+.+..+...+..|+.-..
T Consensus 173 ~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~ 252 (294)
T COG1340 173 KAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEK 252 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888888888888888888888888888888888888888888888888888888888887776544
Q ss_pred HHHHH
Q psy5718 501 HQKKR 505 (720)
Q Consensus 501 ~~~kr 505 (720)
.-+.|
T Consensus 253 ~~~~~ 257 (294)
T COG1340 253 AAKRR 257 (294)
T ss_pred HHHHH
Confidence 43333
No 93
>KOG0994|consensus
Probab=93.82 E-value=12 Score=46.86 Aligned_cols=71 Identities=20% Similarity=0.281 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy5718 412 KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQ 482 (720)
Q Consensus 412 eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~ 482 (720)
++++...-......|.+..+|+.|.+.+-.+-.+.++-|.+|.-.|+.+.+.++.+.+++..|..++.+..
T Consensus 1674 ~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl 1744 (1758)
T KOG0994|consen 1674 DRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVL 1744 (1758)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 33444444444566777778888888888888888888999999999999998888888888877765543
No 94
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.77 E-value=12 Score=40.68 Aligned_cols=121 Identities=26% Similarity=0.410 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy5718 376 TMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELIT-------TARRDYEQLQGEMTRLTQENESAKEEVKEVLQ 448 (720)
Q Consensus 376 ~~Er~k~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~-------~~~~~~e~lq~el~~lq~e~~~~keevke~~q 448 (720)
-.++.|.+++ ++.+|..|.++...+.....++-..|+. .+......|+.+|.+-.+++..-.++|--++.
T Consensus 165 Lq~Klk~LEe---EN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Lls 241 (306)
T PF04849_consen 165 LQEKLKSLEE---ENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLS 241 (306)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554443 3344444444444333333333333333 33333344455555555555555555555444
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5718 449 ALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNL 513 (720)
Q Consensus 449 aleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l 513 (720)
.+..+... +.....|++.|..-|......-..|..||..|++ |.+|++..|
T Consensus 242 qivdlQ~r-------~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqd-------kY~E~~~mL 292 (306)
T PF04849_consen 242 QIVDLQQR-------CKQLAAENEELQQHLQASKESQRQLQAELQELQD-------KYAECMAML 292 (306)
T ss_pred HHHHHHHH-------HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 44444333 3333444555555555545555555666655554 555555444
No 95
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.71 E-value=18 Score=42.31 Aligned_cols=17 Identities=6% Similarity=-0.197 Sum_probs=7.1
Q ss_pred hccCCccccCc-ccccCC
Q psy5718 209 INKSLSADGAG-KLEEEF 225 (720)
Q Consensus 209 INkSL~aLg~V-aL~~~~ 225 (720)
++.+...+.++ .++++.
T Consensus 123 ~g~~~~~f~~~v~l~q~~ 140 (562)
T PHA02562 123 LGMNYKSFKQIVVLGTAG 140 (562)
T ss_pred HCCCHHHHhHHheeccCc
Confidence 33333444444 444443
No 96
>PRK01156 chromosome segregation protein; Provisional
Probab=93.65 E-value=25 Score=43.82 Aligned_cols=33 Identities=12% Similarity=0.348 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy5718 423 EQLQGEMTRLTQENESAKEEVKEVLQALEELAV 455 (720)
Q Consensus 423 e~lq~el~~lq~e~~~~keevke~~qaleel~~ 455 (720)
+++..++..|+.+....+.++.++..++.+|..
T Consensus 412 ~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~ 444 (895)
T PRK01156 412 NEINVKLQDISSKVSSLNQRIRALRENLDELSR 444 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555555554444444443
No 97
>KOG4674|consensus
Probab=93.62 E-value=34 Score=45.31 Aligned_cols=27 Identities=15% Similarity=0.095 Sum_probs=16.7
Q ss_pred hhhhHHHHHHHhhhhhhHhhHhhhhcc
Q psy5718 541 EEEFTVARLYISKMKWRNGETVKEDEQ 567 (720)
Q Consensus 541 e~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (720)
=.+.+.++=-|.+|..++..|=++-+.
T Consensus 857 ~~~l~~~~~~~~~le~k~~eL~k~l~~ 883 (1822)
T KOG4674|consen 857 LTSLDSVSTNIAKLEIKLSELEKRLKS 883 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666665544
No 98
>KOG0994|consensus
Probab=93.60 E-value=26 Score=43.98 Aligned_cols=66 Identities=24% Similarity=0.320 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q psy5718 412 KELITTARRDYEQLQGEMTRLTQENESA-------KEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEE 477 (720)
Q Consensus 412 eell~~~~~~~e~lq~el~~lq~e~~~~-------keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~e 477 (720)
+..+..+.++.+..|+.|.+++++..++ -..+.++...+++|+.+|.|.+.+.+...+......++
T Consensus 1583 ~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~ 1655 (1758)
T KOG0994|consen 1583 QDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQ 1655 (1758)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555544 45667888888888899998888877666555544444
No 99
>KOG4302|consensus
Probab=93.56 E-value=21 Score=42.75 Aligned_cols=132 Identities=19% Similarity=0.252 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhHH
Q psy5718 438 SAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLK---------------QTTLNTTSTELQQIKDMSNHQ 502 (720)
Q Consensus 438 ~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~---------------~~~~~~l~~el~~l~~~~~~~ 502 (720)
.+++....+...|+.|-..|+++-.+..+...+++.|++++... ...++.++..|..|++.....
T Consensus 100 tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~R 179 (660)
T KOG4302|consen 100 TLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDR 179 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 67888899999999999999999999999999999999999866 388999999999999998888
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhcCCC-ccc-ccCCccc---cchhhhHHHHHH--HhhhhhhHhhHhhhhcccc
Q psy5718 503 KKRINEMLTNLLKDLCEIGLVIGSEG-DMK-VTSDGAG---KLEEEFTVARLY--ISKMKWRNGETVKEDEQVN 569 (720)
Q Consensus 503 ~kr~~e~~~~l~~dl~e~~~~~~~~~-~~~-~~~~~~~---~~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 569 (720)
.+.+-++...+....+.+|.-...-. ++. ...+..| ..=-.-|.+||- +-+|+.+.+.-.++++.|-
T Consensus 180 lekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl~~l~ 253 (660)
T KOG4302|consen 180 LEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKKQRLQKLQDLR 253 (660)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887766666555444444433110 111 0111112 111123556654 5667777777777765543
No 100
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.51 E-value=1 Score=45.74 Aligned_cols=38 Identities=32% Similarity=0.432 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5718 463 EVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSN 500 (720)
Q Consensus 463 e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~ 500 (720)
++.++.+-++.+.+|+..++-.++.++..+..|++-..
T Consensus 138 ~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~ 175 (194)
T PF08614_consen 138 ELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENR 175 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555554443
No 101
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=93.40 E-value=18 Score=41.34 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy5718 479 TLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDL 517 (720)
Q Consensus 479 ~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl 517 (720)
.++...++-+-.+.+.|......++.-+.....+|.|-+
T Consensus 378 e~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~ 416 (622)
T COG5185 378 EKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTL 416 (622)
T ss_pred HHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 334444444444445555555555555555555554443
No 102
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.37 E-value=12 Score=39.40 Aligned_cols=127 Identities=19% Similarity=0.335 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhh
Q psy5718 384 TTARRDYEQLQGEMTRLTQENESAKEEV---KELI--TTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYD 458 (720)
Q Consensus 384 ee~~~l~~ql~~Ei~~~~q~~ekLkeq~---eell--~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d 458 (720)
+.+...++.++.++-+....+.++.+++ ++.+ .+..+.|..|+.++..++++..++.+++.++.-..+.+.
T Consensus 48 ~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~---- 123 (239)
T COG1579 48 EALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLE---- 123 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3334444445555555555555555555 2222 223445556666666666666666666666555544433
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHH
Q psy5718 459 QKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEI 520 (720)
Q Consensus 459 ~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~ 520 (720)
.+++.++..+..+...+. ..-.+++.++..+.+.-......++++-.-|=.+|..+
T Consensus 124 ---~~i~~l~~~~~~~e~~~~---e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~ 179 (239)
T COG1579 124 ---KEIEDLKERLERLEKNLA---EAEARLEEEVAEIREEGQELSSKREELKEKLDPELLSE 179 (239)
T ss_pred ---HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 333444444444444332 23344555666666643333333366666665665433
No 103
>KOG0971|consensus
Probab=93.28 E-value=26 Score=42.96 Aligned_cols=37 Identities=24% Similarity=0.500 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy5718 396 EMTRLTQENESAKEEV---KELITTARRDYEQLQGEMTRL 432 (720)
Q Consensus 396 Ei~~~~q~~ekLkeq~---eell~~~~~~~e~lq~el~~l 432 (720)
+..++.+.+.+||+.+ +++.++...+..+++.++-+.
T Consensus 369 qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k 408 (1243)
T KOG0971|consen 369 QFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKK 408 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 4556666666777666 555555555555554444433
No 104
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.24 E-value=6.5 Score=43.06 Aligned_cols=87 Identities=21% Similarity=0.291 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 408 KEEVKELITTARRDYEQLQGEMTRLTQENESA----KEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQT 483 (720)
Q Consensus 408 keq~eell~~~~~~~e~lq~el~~lq~e~~~~----keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~ 483 (720)
.+.+.+++...+..+..|+.++..|++..+.. -++.+.+..+|.++. .+++.++++++.+..++..+..
T Consensus 167 ~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~-------~ei~~~~~~l~e~~~~l~~l~~ 239 (312)
T smart00787 167 LELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLL-------QEIMIKVKKLEELEEELQELES 239 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 33347777777777777777777776655443 234444444444443 3344444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHhH
Q psy5718 484 TLNTTSTELQQIKDMSNH 501 (720)
Q Consensus 484 ~~~~l~~el~~l~~~~~~ 501 (720)
.+.+...+.+.++...+.
T Consensus 240 ~I~~~~~~k~e~~~~I~~ 257 (312)
T smart00787 240 KIEDLTNKKSELNTEIAE 257 (312)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444333
No 105
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.19 E-value=3.4 Score=38.95 Aligned_cols=98 Identities=28% Similarity=0.429 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhH
Q psy5718 383 ITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQ 462 (720)
Q Consensus 383 ~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~ 462 (720)
.+.+...+++++.|+......+.++ ....+.+..|+.+|-.+++..+....++. .| ..
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l-----------~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~-~L----------~~ 75 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARL-----------EAERDELREEIVKLMEENEELRALKKEVE-EL----------EQ 75 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----------HH
Confidence 3444444455555555554444444 33345667777788777776665555533 22 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5718 463 EVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQ 502 (720)
Q Consensus 463 e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~ 502 (720)
+++++...++++-+-+.+|...+..|+..+.++|++--.|
T Consensus 76 el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Q 115 (120)
T PF12325_consen 76 ELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQ 115 (120)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888888888889999999999888886554
No 106
>KOG4360|consensus
Probab=92.99 E-value=9.7 Score=43.74 Aligned_cols=84 Identities=17% Similarity=0.231 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 413 ELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTEL 492 (720)
Q Consensus 413 ell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el 492 (720)
+++.+...++-.+|.++.+|-..+..++.+.+.+-..-|++..-.-..++.=++...|...+.+.-++.+..+...+.||
T Consensus 219 eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeEL 298 (596)
T KOG4360|consen 219 EELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEEL 298 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555555555554444444443333333333333444444444444455555555555666
Q ss_pred HHHH
Q psy5718 493 QQIK 496 (720)
Q Consensus 493 ~~l~ 496 (720)
+.|+
T Consensus 299 k~lr 302 (596)
T KOG4360|consen 299 KCLR 302 (596)
T ss_pred Hhhc
Confidence 5554
No 107
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.94 E-value=23 Score=42.27 Aligned_cols=86 Identities=19% Similarity=0.242 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q psy5718 391 EQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKE 470 (720)
Q Consensus 391 ~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e 470 (720)
.+|+.-+..-.+....|..|.+....-...+|+.|.........+...--++++++.+...++......|.+....+.++
T Consensus 397 ~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e 476 (594)
T PF05667_consen 397 AKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKE 476 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555545555555544444444444444555555555555554444444444444444
Q ss_pred HHHHHH
Q psy5718 471 FETLTE 476 (720)
Q Consensus 471 ~~~l~~ 476 (720)
++.+..
T Consensus 477 ~e~~~k 482 (594)
T PF05667_consen 477 LEKLPK 482 (594)
T ss_pred HHhCCC
Confidence 444433
No 108
>KOG0018|consensus
Probab=92.94 E-value=10 Score=47.16 Aligned_cols=173 Identities=17% Similarity=0.276 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q psy5718 396 EMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLT 475 (720)
Q Consensus 396 Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~ 475 (720)
++.++.+.-++|.+++.++-. .+......+..+..|..+...++.++..+ ...++....|++.+.
T Consensus 653 ~~~~L~~~k~rl~eel~ei~~-~~~e~~~v~~~i~~le~~~~~~~~~~~~~--------------k~~l~~~~~El~~~~ 717 (1141)
T KOG0018|consen 653 EVDQLKEKKERLLEELKEIQK-RRKEVSSVESKIHGLEMRLKYSKLDLEQL--------------KRSLEQNELELQRTE 717 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH
Confidence 677777888888888877766 45566666777777776666665554443 344556677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh-HHhhhhcCCCcccccCCccccchhhhHHHHHHHhhh
Q psy5718 476 EELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLC-EIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKM 554 (720)
Q Consensus 476 ~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~-e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 554 (720)
.++....-.+..+..+++.....-..-.+|+.++..+..+|.| .||..|+.- + +..+ -++|+--|+=+++-
T Consensus 718 ~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Y---e---e~~~--~~~~a~k~~ef~~q 789 (1141)
T KOG0018|consen 718 SEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREY---E---EREL--QQEFAKKRLEFENQ 789 (1141)
T ss_pred HHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehH---H---HHHH--HHHHHHHHHHHHHH
Confidence 7777777778888888888888888888899999999999876 455554332 1 2222 78899889888887
Q ss_pred hhhHhhHhhhhcccccchhHHHHhhhCCCCCCcchhh
Q psy5718 555 KWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASI 591 (720)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (720)
+.-+..=+.--+|-+...-+...+..-..++..++.+
T Consensus 790 ~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~~~~~~~ 826 (1141)
T KOG0018|consen 790 KAKLENQLDFEKQKDTQRRVERWERSVEDLEKEIEGL 826 (1141)
T ss_pred HHHHhhhhhheecccHHHHHHHHHHHHHHHHHhHHhh
Confidence 7766655544444334444444444445555555555
No 109
>KOG0288|consensus
Probab=92.90 E-value=5.5 Score=44.59 Aligned_cols=113 Identities=20% Similarity=0.173 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhH-HHHHH
Q psy5718 392 QLQGEMTRLTQENESAKEEV---KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQ-EVETK 467 (720)
Q Consensus 392 ql~~Ei~~~~q~~ekLkeq~---eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~-e~e~~ 467 (720)
++..++.+..+..+.+-.|. +-...+....+.....+|++||+||.-..++.-- ++.+.+|-.... ..+.+
T Consensus 17 ~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~-----~~a~~~~~t~~~~~~en~ 91 (459)
T KOG0288|consen 17 DLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR-----EEATEKTLTVDVLIAENL 91 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 34445555555555665555 3333445556666777888888888877776544 333444433322 22333
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy5718 468 NKEFETLTEELTL----KQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLC 518 (720)
Q Consensus 468 ~~e~~~l~~el~~----~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~ 518 (720)
+....+=..++.+ -.+...+|. ..-++.||+++++.-++||+
T Consensus 92 ~~r~~~eir~~~~q~~e~~n~~~~l~---------~~~~~~r~~e~la~~~~~l~ 137 (459)
T KOG0288|consen 92 RIRSLNEIRELREQKAEFENAELALR---------EMRRKMRIAERLAEALKDLG 137 (459)
T ss_pred HHHHHHHHHHHHHhhhhhccchhhHH---------HHHHHHHHHHHHHHHhhhcc
Confidence 2222222222222 222222222 33466799999999888876
No 110
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=92.90 E-value=38 Score=43.82 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHH
Q psy5718 460 KSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEI 520 (720)
Q Consensus 460 ~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~ 520 (720)
...++.+...+...+..++..+.+.+.....++++-......+.+++.+.++.|-..+..+
T Consensus 821 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~~~l 881 (1201)
T PF12128_consen 821 LEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLRDLLEKL 881 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444666677777777777777777777777777777777777777777777654444444
No 111
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=92.85 E-value=15 Score=38.99 Aligned_cols=128 Identities=18% Similarity=0.336 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q psy5718 396 EMTRLTQENESAKEEVKELITT----ARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEF 471 (720)
Q Consensus 396 Ei~~~~q~~ekLkeq~eell~~----~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~ 471 (720)
++.+.....+.++.++++.+.. .......+..++..++.++...++.+..+...++......+...+.++.....+
T Consensus 28 ~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l 107 (302)
T PF10186_consen 28 ELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRL 107 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555444442 222223333444444444444444444444444433333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhhh
Q psy5718 472 ETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLV 523 (720)
Q Consensus 472 ~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~~ 523 (720)
................+..++...+.........+...-..++++|+.|=.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI 159 (302)
T PF10186_consen 108 SASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELSEIFPI 159 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3222222222233333334444444443333444444445566677776666
No 112
>KOG0964|consensus
Probab=92.53 E-value=34 Score=42.38 Aligned_cols=138 Identities=15% Similarity=0.215 Sum_probs=86.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------HHHHHHHHHH
Q psy5718 374 RATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKE------------------------------LITTARRDYE 423 (720)
Q Consensus 374 ~~~~Er~k~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~ee------------------------------ll~~~~~~~e 423 (720)
....++.+.+.++...|..+.++-++....+..|.++..+ .+.++.....
T Consensus 335 ~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~ 414 (1200)
T KOG0964|consen 335 DKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQEN 414 (1200)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3344555555566666666655555444444444443322 2333334444
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5718 424 QLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQK 503 (720)
Q Consensus 424 ~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~ 503 (720)
.+|.++..+..+.++..++++++...+.+.....++--.+.-.++++.+.+...-..+=.+=..|+..+..+++..+.+.
T Consensus 415 ~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~ 494 (1200)
T KOG0964|consen 415 ILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAE 494 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777777777777776655555555555555666666666655565666777888888888888888
Q ss_pred HHHHHHHH
Q psy5718 504 KRINEMLT 511 (720)
Q Consensus 504 kr~~e~~~ 511 (720)
+++..+++
T Consensus 495 ~~L~~~~~ 502 (1200)
T KOG0964|consen 495 KNLRATMN 502 (1200)
T ss_pred HHHHHhcc
Confidence 88888776
No 113
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=92.31 E-value=28 Score=40.84 Aligned_cols=134 Identities=26% Similarity=0.350 Sum_probs=82.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHH---HHHH
Q psy5718 374 RATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKE-EVKE---VLQA 449 (720)
Q Consensus 374 ~~~~Er~k~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~ke-evke---~~qa 449 (720)
.+..++.....+...+...+..++.+....++.|+.++ +.......++......+..|+.+.....+ ++.. ....
T Consensus 197 eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~-~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~ 275 (522)
T PF05701_consen 197 EAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEEL-EAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEK 275 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhh
Confidence 34455555666666666667777777777777777777 33333344444444455555555554444 2221 1222
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy5718 450 LEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINE 508 (720)
Q Consensus 450 leel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e 508 (720)
...+...+.....++++.+..++...+++..+...+.+|..||+..+.-.+.-+.|...
T Consensus 276 ~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~ 334 (522)
T PF05701_consen 276 SSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKE 334 (522)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556667777777888888888888888888888888887777666666543
No 114
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.08 E-value=2.5 Score=46.26 Aligned_cols=21 Identities=5% Similarity=0.137 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q psy5718 618 ERLYQQLDEKDEEINQQSQYA 638 (720)
Q Consensus 618 ~~~~~q~~~lrdei~~k~~~~ 638 (720)
..++.-|..+=+++.+-...+
T Consensus 236 ~~Fd~am~~~L~~~~q~~~~~ 256 (314)
T PF04111_consen 236 RKFDKAMVAFLDCLQQLAEFV 256 (314)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHH
Confidence 456666666666666655555
No 115
>KOG0995|consensus
Probab=91.89 E-value=31 Score=40.42 Aligned_cols=184 Identities=18% Similarity=0.154 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q psy5718 387 RRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVET 466 (720)
Q Consensus 387 ~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~ 466 (720)
.+.+..|++.++.+...+..++.-. ......++.++.++..-.+|+++.+.++.++-..++.. +=...+|+.
T Consensus 265 re~~~~L~~D~nK~~~y~~~~~~k~----~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q----~iS~~dve~ 336 (581)
T KOG0995|consen 265 REKKARLQDDVNKFQAYVSQMKSKK----QHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ----GISGEDVER 336 (581)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCHHHHHH
Confidence 4445567777776666655544333 33344455566666666666666666666655444432 334556777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHhHHhhhhcCCCcccccCCccccchhh
Q psy5718 467 KNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEM---LTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEE 543 (720)
Q Consensus 467 ~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~---~~~l~~dl~e~~~~~~~~~~~~~~~~~~~~~e~~ 543 (720)
-+.|.+.|..+|......+..+..++=.++.....+.+=+... +++|.+-|+=.+...+-+ ++..| +.-
T Consensus 337 mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n--~~~~p------e~~ 408 (581)
T KOG0995|consen 337 MNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKN--LERNP------ERA 408 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCcCC------ccC
Confidence 7888888888888888777777777766665444433332222 233333332221221111 11001 222
Q ss_pred hHHHHHHHhhhhhhHhhHhhhhcccccchhHHHHhhhCCCCCCcchhh
Q psy5718 544 FTVARLYISKMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASI 591 (720)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (720)
++..+=|-+..+-=++.++. +.++.+...++++-.||+.++.+
T Consensus 409 ~~~~~d~k~~V~~~l~el~~-----ei~~~~~~~~~~~~tLq~~~~~~ 451 (581)
T KOG0995|consen 409 ATNGVDLKSYVKPLLKELLD-----EISEELHEAENELETLQEHFSNK 451 (581)
T ss_pred ccccccchhHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45455555555554554443 45677777888888888888776
No 116
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.86 E-value=12 Score=35.63 Aligned_cols=98 Identities=18% Similarity=0.291 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5718 423 EQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQ 502 (720)
Q Consensus 423 e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~ 502 (720)
+.+...+..++.+.+.--..+++.....+.--+......+.+...+.++..+..++..+.+...+....|...+.....+
T Consensus 20 ~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~q 99 (132)
T PF07926_consen 20 EDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQ 99 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33344444445555555555555555555544555556677777777888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHhHH
Q psy5718 503 KKRINEMLTNLLKDLCEI 520 (720)
Q Consensus 503 ~kr~~e~~~~l~~dl~e~ 520 (720)
|+.+..=+..+-+-+-|+
T Consensus 100 k~~le~e~~~~~~r~~dL 117 (132)
T PF07926_consen 100 KEQLEKELSELEQRIEDL 117 (132)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 877776555554444443
No 117
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.80 E-value=11 Score=45.79 Aligned_cols=14 Identities=43% Similarity=0.643 Sum_probs=10.1
Q ss_pred HhHHHHHHHHHHHH
Q psy5718 499 SNHQKKRINEMLTN 512 (720)
Q Consensus 499 ~~~~~kr~~e~~~~ 512 (720)
+..|+++|.++|..
T Consensus 683 ~~~Q~~~I~~iL~~ 696 (717)
T PF10168_consen 683 SESQKRTIKEILKQ 696 (717)
T ss_pred CHHHHHHHHHHHHH
Confidence 56788888877654
No 118
>KOG4643|consensus
Probab=91.69 E-value=43 Score=41.68 Aligned_cols=29 Identities=10% Similarity=0.132 Sum_probs=19.6
Q ss_pred hhccccCCcccHHHHHhHHHHHHHhcccc
Q psy5718 243 VARCTSMESSQAEEHKKAIEYEKELGETR 271 (720)
Q Consensus 243 mI~~iSPs~~~~~ETlsTL~fa~rak~Ik 271 (720)
+-+.-+|...-+..|+.-|.|-..++.+.
T Consensus 54 g~avqcp~kelfi~riq~ldlete~a~~~ 82 (1195)
T KOG4643|consen 54 GSAVQCPTKELFIQRIQILDLETEMAQMR 82 (1195)
T ss_pred HhhhcCCcHHHHHHHHHhhhhHHHHHHHH
Confidence 33334788888888888888766655544
No 119
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=91.52 E-value=2.8 Score=48.99 Aligned_cols=81 Identities=23% Similarity=0.410 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 419 RRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQ---KSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQI 495 (720)
Q Consensus 419 ~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~---~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l 495 (720)
++..++|+.++..|+.+++..+.++-.+...|+.+..+++. +..+++.+..++..|..+|.++......|..+|+++
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555555555555555555555543 345688889999999999999999999999999999
Q ss_pred HHHH
Q psy5718 496 KDMS 499 (720)
Q Consensus 496 ~~~~ 499 (720)
+.+.
T Consensus 508 ~k~~ 511 (652)
T COG2433 508 RKMR 511 (652)
T ss_pred HHHH
Confidence 9663
No 120
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=91.51 E-value=14 Score=35.80 Aligned_cols=86 Identities=24% Similarity=0.325 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 409 EEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTT 488 (720)
Q Consensus 409 eq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l 488 (720)
.-++..+.+..++++-.|.....+..+++.++.++..+...++.++.+..+-..++...+.+.+.|..+|..++..+..|
T Consensus 20 dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eL 99 (140)
T PF10473_consen 20 DSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSEL 99 (140)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466777888888888888888888999999998888888888888888888888888888888888888776666655
Q ss_pred HHHHHH
Q psy5718 489 STELQQ 494 (720)
Q Consensus 489 ~~el~~ 494 (720)
++-...
T Consensus 100 E~~~~~ 105 (140)
T PF10473_consen 100 ESLNSS 105 (140)
T ss_pred HHHhHH
Confidence 544433
No 121
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.46 E-value=8 Score=38.72 Aligned_cols=57 Identities=25% Similarity=0.351 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 441 EEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKD 497 (720)
Q Consensus 441 eevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~ 497 (720)
+..+.+...+..+...|....+++.+..++..+...+...+...+..+...++++.+
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 179 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEE 179 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444333333333333333333333333333333
No 122
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=91.32 E-value=30 Score=39.26 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5718 283 ARKDLKGLEDTVTKELQTLHNLRKLFVQDLQ 313 (720)
Q Consensus 283 ~~~~Lk~ei~~Lk~EL~~l~nlrk~~~qdl~ 313 (720)
....|..+|..++.++..+...+..+..++.
T Consensus 60 ~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~ 90 (420)
T COG4942 60 QRAKLEKQLKSLETEIASLEAQLIETADDLK 90 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3366666666666666666555544444443
No 123
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=91.14 E-value=20 Score=36.95 Aligned_cols=155 Identities=19% Similarity=0.298 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q psy5718 390 YEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNK 469 (720)
Q Consensus 390 ~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~ 469 (720)
+..+.....++...++.+..-+.+++....+..+....++.++..+.+.+-.++..+..+|-+|-..|..-...+++..+
T Consensus 32 ~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~ 111 (207)
T PF05010_consen 32 YEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKK 111 (207)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566666666666667777777778888888999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhhhhcCCCcccccCCccccchhhhHHHHH
Q psy5718 470 EFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARL 549 (720)
Q Consensus 470 e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 549 (720)
-=+.|...+..-...+...+..++.|+.....+-.+..+ ||..+...+ ..|.+..+.
T Consensus 112 NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANe----------ei~~v~~~~-------------~~e~~aLqa 168 (207)
T PF05010_consen 112 NEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANE----------EIAQVRSKH-------------QAELLALQA 168 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHh-------------HHHHHHHHH
Confidence 888888888887788887777777777666544443333 444444444 556777777
Q ss_pred HHhhhhhhHhhHhhhhcc
Q psy5718 550 YISKMKWRNGETVKEDEQ 567 (720)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~ 567 (720)
=+.|....+.||-....|
T Consensus 169 ~lkk~e~~~~SLe~~LeQ 186 (207)
T PF05010_consen 169 SLKKEEMKVQSLEESLEQ 186 (207)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777777655544
No 124
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=91.10 E-value=24 Score=37.63 Aligned_cols=98 Identities=14% Similarity=0.245 Sum_probs=57.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy5718 375 ATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEV----KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 450 (720)
Q Consensus 375 ~~~Er~k~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~----eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qal 450 (720)
++...++.+ ...|..+..-+.-...-..+..+++ .+--.........||.++..+..+...+.++|.-+..=
T Consensus 35 st~~~Vr~l---Lqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TY- 110 (258)
T PF15397_consen 35 STALKVRKL---LQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTY- 110 (258)
T ss_pred hHHHHHHHH---HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 344444443 3334444444444444444444444 33334445555677888888888888888777664333
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q psy5718 451 EELAVNYDQKSQEVETKNKEFETLTEEL 478 (720)
Q Consensus 451 eel~~n~d~~~~e~e~~~~e~~~l~~el 478 (720)
.-..|=-++-.+.++...++++.++.
T Consensus 111 --kD~EYPvK~vqIa~L~rqlq~lk~~q 136 (258)
T PF15397_consen 111 --KDHEYPVKAVQIANLVRQLQQLKDSQ 136 (258)
T ss_pred --hhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 22567777777777888887777763
No 125
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=90.97 E-value=20 Score=36.58 Aligned_cols=40 Identities=20% Similarity=0.345 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhh
Q psy5718 422 YEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKS 461 (720)
Q Consensus 422 ~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~ 461 (720)
.++|+.++..+....+.+...+.++...++-...+|....
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql 159 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQL 159 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4788999999999999999999998888877666665433
No 126
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=90.94 E-value=28 Score=38.21 Aligned_cols=69 Identities=13% Similarity=0.217 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhhhhcCCCcccccCCccccch
Q psy5718 464 VETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLE 541 (720)
Q Consensus 464 ~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~~~~~~~~~~~~~~~~~~~e 541 (720)
=+.+=.+++.+.....++...+.++-.|.+.+..--...|.++.-+ | .|+..++|+. +-+ ..|+.|.+.
T Consensus 128 re~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RL-N------~ELn~~L~g~-~~r-ivDIDaLi~ 196 (319)
T PF09789_consen 128 REDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRL-N------HELNYILNGD-ENR-IVDIDALIM 196 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H------HHHHHHhCCC-CCC-cccHHHHHH
Confidence 3444556666777777777777777777777766666666665543 2 2456778776 544 557776543
No 127
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=90.74 E-value=3.8 Score=35.24 Aligned_cols=65 Identities=23% Similarity=0.246 Sum_probs=49.6
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5718 449 ALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNL 513 (720)
Q Consensus 449 aleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l 513 (720)
-|+.|...|.+--..+..++.+++.|.++-..+...+..|..|.++|+.--+....||.-++..|
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35556666666666677777788888888777788888888899999988888888877766554
No 128
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.74 E-value=12 Score=37.44 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=9.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Q psy5718 429 MTRLTQENESAKEEVKEVLQALEEL 453 (720)
Q Consensus 429 l~~lq~e~~~~keevke~~qaleel 453 (720)
....+++..+.++..++....+.++
T Consensus 125 ~~~~~~~l~~l~~~~~~~~~e~~~l 149 (191)
T PF04156_consen 125 LKSVEERLDSLDESIKELEKEIREL 149 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444333333333
No 129
>KOG0964|consensus
Probab=90.72 E-value=24 Score=43.56 Aligned_cols=138 Identities=15% Similarity=0.189 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5718 424 QLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQK 503 (720)
Q Consensus 424 ~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~ 503 (720)
+.+.++..||+.++...-++.+.-|....+--+.-+..-....-..+.+.+..++.....+-..++..+.-...+-..-+
T Consensus 675 ~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~ 754 (1200)
T KOG0964|consen 675 ESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIK 754 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHH
Confidence 34445555555555555555555555444444333333333333444444444444444444444444444444433334
Q ss_pred HHHHHHHHHHHHHHhHHhhhhcCCCcccccCCccccchhhhHHHHHHHhhhhhhHhhHhhhhcccc
Q psy5718 504 KRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDEQVN 569 (720)
Q Consensus 504 kr~~e~~~~l~~dl~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (720)
-+++.+....--==+|+|+.+-+. ..+ ...|...-.+.=|++|.-+...+..+...++
T Consensus 755 ~~l~~~~~~~~~~e~el~sel~sq----Lt~----ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~ 812 (1200)
T KOG0964|consen 755 TSLHKLESQSNYFESELGSELFSQ----LTP----EELERLSKLNKEINKLSVKLRALREERIDIE 812 (1200)
T ss_pred HHHHHHHHHHHhHHHHHhHHHHhh----cCH----HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444443333333335555555333 111 2245566677788888888887777665544
No 130
>KOG4593|consensus
Probab=90.67 E-value=44 Score=40.01 Aligned_cols=55 Identities=25% Similarity=0.357 Sum_probs=27.1
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHH
Q psy5718 450 LEELAVNYDQKSQEVETKNKEFETLTEELT---LKQTTLNTTSTELQQIKDMSNHQKK 504 (720)
Q Consensus 450 leel~~n~d~~~~e~e~~~~e~~~l~~el~---~~~~~~~~l~~el~~l~~~~~~~~k 504 (720)
|+.+..+.+..-|+++...+.+..+.++++ +......-|+.|++.|+..-.+..+
T Consensus 239 le~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~ 296 (716)
T KOG4593|consen 239 LEAINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLEK 296 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555 3333444444455544444444333
No 131
>KOG0980|consensus
Probab=90.66 E-value=50 Score=40.58 Aligned_cols=59 Identities=22% Similarity=0.298 Sum_probs=23.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 433 TQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTE 491 (720)
Q Consensus 433 q~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~e 491 (720)
+.+.+..|+-.-++.+.=-+|..+||+..++++--..-+..+.++..++.-.+..++.+
T Consensus 423 e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~ 481 (980)
T KOG0980|consen 423 ENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRA 481 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444454444444333333333333333333333333333
No 132
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=90.43 E-value=44 Score=39.57 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 472 ETLTEELTLKQTTLNTTSTELQQIKD 497 (720)
Q Consensus 472 ~~l~~el~~~~~~~~~l~~el~~l~~ 497 (720)
..+.+-+.+....+..|..|++.++.
T Consensus 309 ~~l~~~l~~~~~~~~~l~~e~~~v~~ 334 (560)
T PF06160_consen 309 KELYEYLEHAKEQNKELKEELERVSQ 334 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444
No 133
>PRK12704 phosphodiesterase; Provisional
Probab=90.40 E-value=31 Score=40.47 Aligned_cols=6 Identities=50% Similarity=0.827 Sum_probs=2.4
Q ss_pred hhhcCC
Q psy5718 522 LVIGSE 527 (720)
Q Consensus 522 ~~~~~~ 527 (720)
-+||-.
T Consensus 224 riigre 229 (520)
T PRK12704 224 RIIGRE 229 (520)
T ss_pred ceeCCC
Confidence 334443
No 134
>PRK09039 hypothetical protein; Validated
Probab=90.40 E-value=28 Score=38.65 Aligned_cols=63 Identities=6% Similarity=0.135 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q psy5718 412 KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETL 474 (720)
Q Consensus 412 eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l 474 (720)
...+...+..|.+.+.++..|+.+.++++..+-.+..+|.............++++..+++..
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666667777777788888888887777777777776666655555555555444444
No 135
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=90.20 E-value=46 Score=39.42 Aligned_cols=138 Identities=20% Similarity=0.277 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 414 LITTARRDYEQLQGEMTRLTQENESAK---EEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTST 490 (720)
Q Consensus 414 ll~~~~~~~e~lq~el~~lq~e~~~~k---eevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~ 490 (720)
.+..+......+..++.+++....-.. +.++.+...+..+...|+.-.+.+++...-.-.+.+++......+..++.
T Consensus 314 ~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~ 393 (560)
T PF06160_consen 314 YLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEE 393 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444332222 12245555666677777777777776666666666666666666666666
Q ss_pred HHHHHHHHHhHHH---HHHHHHHHHHHHHHhHHhhhhcCCCcccccCCccccchhhhHHHHHHHhhhh
Q psy5718 491 ELQQIKDMSNHQK---KRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMK 555 (720)
Q Consensus 491 el~~l~~~~~~~~---kr~~e~~~~l~~dl~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 555 (720)
+...+.+.-..-+ +++.+-+..+-.+|.+|=.-+-.. ..|.+......-|..+.=+|..+.
T Consensus 394 ~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~----nLPGlp~~y~~~~~~~~~~i~~l~ 457 (560)
T PF06160_consen 394 EQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKS----NLPGLPEDYLDYFFDVSDEIEELS 457 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 6666666644443 356667777888888888887654 244454445556665555444443
No 136
>KOG0946|consensus
Probab=90.08 E-value=54 Score=40.01 Aligned_cols=123 Identities=18% Similarity=0.182 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhh--
Q psy5718 381 KLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYD-- 458 (720)
Q Consensus 381 k~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d-- 458 (720)
|+.++.....+.|-+.|..+...++.++++..++- -+.++++.++.....+....++++..+...|...-..-+
T Consensus 650 k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~----~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~ 725 (970)
T KOG0946|consen 650 KYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQ----VENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDL 725 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhH
Confidence 44444444444444455555555555544332222 222333333333333333334443333333331111111
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy5718 459 -QKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRIN 507 (720)
Q Consensus 459 -~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~ 507 (720)
|-.+..+....++..+..|-........-+..+|+.-..+...+|+.+.
T Consensus 726 ~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~ 775 (970)
T KOG0946|consen 726 LQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQR 775 (970)
T ss_pred HhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 2222344456677777777777777777777777766666666666655
No 137
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.01 E-value=54 Score=39.93 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q psy5718 282 QARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARI 316 (720)
Q Consensus 282 ~~~~~Lk~ei~~Lk~EL~~l~nlrk~~~qdl~~r~ 316 (720)
..+.+|..+|+.|+.+|+.. +..-++|+...
T Consensus 418 ~a~~rLE~dvkkLraeLq~~----Rq~E~ELRsqi 448 (697)
T PF09726_consen 418 DAISRLEADVKKLRAELQSS----RQSEQELRSQI 448 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHH
Confidence 34467888888888888776 44455555543
No 138
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=89.88 E-value=29 Score=36.72 Aligned_cols=87 Identities=21% Similarity=0.374 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5718 421 DYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSN 500 (720)
Q Consensus 421 ~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~ 500 (720)
....+..++.+++.+++..++.+.+...++. .....+.......+.....+.+....+......+..+.....
T Consensus 71 r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 143 (302)
T PF10186_consen 71 RLERLRERIERLRKRIEQKRERLEELRESLE-------QRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLA 143 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444 333333322333333444444445555566666666666666
Q ss_pred HHHHHHHHHHHHHH
Q psy5718 501 HQKKRINEMLTNLL 514 (720)
Q Consensus 501 ~~~kr~~e~~~~l~ 514 (720)
+.|+++...+..+.
T Consensus 144 ~~r~~l~~~l~~if 157 (302)
T PF10186_consen 144 RRRRQLIQELSEIF 157 (302)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666555544
No 139
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=89.70 E-value=53 Score=39.36 Aligned_cols=172 Identities=15% Similarity=0.175 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHh
Q psy5718 442 EVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIG 521 (720)
Q Consensus 442 evke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~ 521 (720)
.++-+...+-.|......+++-++++.+++..|.....--...++.++..++.|+.-...-++.-.++...+.+||-+=+
T Consensus 588 q~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~ 667 (786)
T PF05483_consen 588 QMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKS 667 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Confidence 34455555667778888889999999999999999999999999999999999999988888889999999999987433
Q ss_pred hhhcCCCcccccCCccccchhhhHHHHHHHh---hhhhhHhhHhhhhcccccchhHHHHhhhCCCCCCcchhhcccCccc
Q psy5718 522 LVIGSEGDMKVTSDGAGKLEEEFTVARLYIS---KMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGS 598 (720)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (720)
..- ..+..|+-=+|+-.- |++-|. =-||.+ -.+|-+.-||.-|-| ||.++.- +.+
T Consensus 668 ~~e-------------~~L~~EveK~k~~a~EAvK~q~Et---dlrCQh-KIAeMVALMEKHK~q----YDkiVEE-kDa 725 (786)
T PF05483_consen 668 ISE-------------EELLGEVEKAKLTADEAVKLQEET---DLRCQH-KIAEMVALMEKHKHQ----YDKIVEE-KDA 725 (786)
T ss_pred hhH-------------HHHHHHHHHHHHHHHHHHHhHHHH---HHHHHH-HHHHHHHHHHHhHHH----HHHHHHH-HHH
Confidence 221 122334333333221 222221 224544 356666667766643 4443211 111
Q ss_pred cccccccchHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5718 599 GLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYA 638 (720)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~lrdei~~k~~~~ 638 (720)
|.. . .+...++.-..+++|+..+-.|+.||..-...+
T Consensus 726 EL~--~-~k~KE~E~~s~k~sLE~ELs~lk~el~slK~QL 762 (786)
T PF05483_consen 726 ELG--L-YKKKEQEQSSHKASLELELSNLKNELSSLKKQL 762 (786)
T ss_pred HHH--H-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 111 0 111112222378889988888998888766555
No 140
>KOG1853|consensus
Probab=89.25 E-value=32 Score=36.31 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy5718 422 YEQLQGEMTRLTQENESAKEEVKEVLQALE 451 (720)
Q Consensus 422 ~e~lq~el~~lq~e~~~~keevke~~qale 451 (720)
++.+.+++++.-++|.-++.|+.|-.-+|+
T Consensus 135 leDfeqrLnqAIErnAfLESELdEke~lle 164 (333)
T KOG1853|consen 135 LEDFEQRLNQAIERNAFLESELDEKEVLLE 164 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344555555555555555555555444444
No 141
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=89.19 E-value=27 Score=36.89 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy5718 462 QEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLT 511 (720)
Q Consensus 462 ~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~ 511 (720)
+++.+...++..|.++...+......++.++..-++....-+.+...+++
T Consensus 82 ~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~~~ 131 (246)
T PF00769_consen 82 QELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLEVMS 131 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666667777777777777777777777777777766666666555443
No 142
>KOG0946|consensus
Probab=88.82 E-value=39 Score=41.10 Aligned_cols=70 Identities=23% Similarity=0.280 Sum_probs=30.3
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHH
Q psy5718 450 LEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEI 520 (720)
Q Consensus 450 leel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~ 520 (720)
+.++...|.+-.++.+++.....+..+.+.........+..+...+..--..-+.|+.. .+++.+.+.|=
T Consensus 808 l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~-~~nli~~ltEk 877 (970)
T KOG0946|consen 808 LQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKF-GNNLIKELTEK 877 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhh-hhhHHHHHhhh
Confidence 34444444444444444444444444444444433333333333333322222334333 45555555554
No 143
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=88.74 E-value=49 Score=38.79 Aligned_cols=8 Identities=63% Similarity=1.169 Sum_probs=3.5
Q ss_pred hhhhcCCC
Q psy5718 521 GLVIGSEG 528 (720)
Q Consensus 521 ~~~~~~~~ 528 (720)
|-|||-.|
T Consensus 217 griigreG 224 (514)
T TIGR03319 217 GRIIGREG 224 (514)
T ss_pred ccccCCCc
Confidence 44444443
No 144
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=88.66 E-value=3.4 Score=41.91 Aligned_cols=87 Identities=15% Similarity=0.250 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy5718 425 LQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKK 504 (720)
Q Consensus 425 lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~k 504 (720)
+..++............++..+...+..+......+..-++..+-|+..|..+++....++..|+.|-..|=+-.-..+.
T Consensus 107 l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~ 186 (194)
T PF08614_consen 107 LEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKA 186 (194)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444455666677888888888888888888888888888888887777777
Q ss_pred HHHHHHH
Q psy5718 505 RINEMLT 511 (720)
Q Consensus 505 r~~e~~~ 511 (720)
+-++.||
T Consensus 187 ~eAe~mN 193 (194)
T PF08614_consen 187 QEAERMN 193 (194)
T ss_dssp HHHHH--
T ss_pred HHHHHhc
Confidence 7777665
No 145
>KOG1937|consensus
Probab=88.59 E-value=40 Score=38.40 Aligned_cols=142 Identities=19% Similarity=0.305 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHhhhhhhhHHHHHHH-HHHHHHHHHHHH---
Q psy5718 407 AKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE--LAVNYDQKSQEVETKN-KEFETLTEELTL--- 480 (720)
Q Consensus 407 Lkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qalee--l~~n~d~~~~e~e~~~-~e~~~l~~el~~--- 480 (720)
+++.+=+.+......+++|+..+..++...........++.+.|.+ +...-..+..+++++. .+++.+..+|..
T Consensus 280 lkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~e 359 (521)
T KOG1937|consen 280 LKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDE 359 (521)
T ss_pred hHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 3333444555556666677777777766666666666666666554 3333444555555555 445544444443
Q ss_pred ----HHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHhHHhhhhcCCCcccccC-CccccchhhhHHHH
Q psy5718 481 ----KQTTLNTTSTELQQIKDM--SNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTS-DGAGKLEEEFTVAR 548 (720)
Q Consensus 481 ----~~~~~~~l~~el~~l~~~--~~~~~kr~~e~~~~l~~dl~e~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~ 548 (720)
...-...|..||+.+-+- --....||.|+..|.=|-=.||--++|..-++...- ..+|++.--|.|.=
T Consensus 360 ei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtd 434 (521)
T KOG1937|consen 360 EIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTD 434 (521)
T ss_pred HHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 334444556666655442 123345888988888888888888887642322221 24567777777653
No 146
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=88.49 E-value=60 Score=38.47 Aligned_cols=14 Identities=14% Similarity=0.079 Sum_probs=6.8
Q ss_pred HHHHHHhhhhhhHh
Q psy5718 546 VARLYISKMKWRNG 559 (720)
Q Consensus 546 ~~~~~~~~~~~~~~ 559 (720)
-||=.+.+++..+.
T Consensus 415 eAr~kL~~~~~~L~ 428 (569)
T PRK04778 415 EAREKLERYRNKLH 428 (569)
T ss_pred HHHHHHHHHHHHHH
Confidence 35555555544433
No 147
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=88.33 E-value=23 Score=33.46 Aligned_cols=46 Identities=28% Similarity=0.346 Sum_probs=27.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy5718 434 QENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELT 479 (720)
Q Consensus 434 ~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~ 479 (720)
.+...++.+++++.+....+-.=|=+|+.+|++++..++++.+-..
T Consensus 68 ~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 68 KEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYR 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555566677777777777777766543
No 148
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=88.22 E-value=38 Score=35.79 Aligned_cols=44 Identities=16% Similarity=0.319 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy5718 461 SQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKK 504 (720)
Q Consensus 461 ~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~k 504 (720)
..++.........|..++..+......++.++..+++....+.+
T Consensus 95 ~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~ 138 (239)
T COG1579 95 NIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333333333333333333333333
No 149
>KOG0995|consensus
Probab=88.15 E-value=61 Score=38.10 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q psy5718 616 ERERLYQQLDEKDEEINQQSQYA 638 (720)
Q Consensus 616 ~~~~~~~q~~~lrdei~~k~~~~ 638 (720)
-+..+.+|+.++=|.|....-.|
T Consensus 536 er~ki~~ql~~~i~~i~~~k~~i 558 (581)
T KOG0995|consen 536 ERQKIAKQLFAVIDQISDFKVSI 558 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666655544333
No 150
>KOG2129|consensus
Probab=88.10 E-value=3.8 Score=45.72 Aligned_cols=93 Identities=17% Similarity=0.190 Sum_probs=56.4
Q ss_pred cchhhhHHHHHHHhhhhhhHhhHhhhh--cccc--------------------cchhHHHHhhhCCCCCCcchhh-----
Q psy5718 539 KLEEEFTVARLYISKMKWRNGETVKED--EQVN--------------------LADPVDMAASIAPTPESAPASI----- 591 (720)
Q Consensus 539 ~~e~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~----- 591 (720)
..|.||-|-.|.=+-=|-|.+++.+.. +||- |-..|+..|+.||-|.+-+|.=
T Consensus 153 eqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~ 232 (552)
T KOG2129|consen 153 EQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPS 232 (552)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 346678888877666677888877765 4432 5577888899999888888864
Q ss_pred ----cccCccccccccccchHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5718 592 ----LPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYA 638 (720)
Q Consensus 592 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~lrdei~~k~~~~ 638 (720)
++++.+-+ .+...-..-+-..|....++||-.+...|+..
T Consensus 233 ~prdia~~~~~~-------gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~ 276 (552)
T KOG2129|consen 233 LPRDIAKIPDVH-------GDEAAAEKLHIDKLQAEVERLRTYLSRAQKSY 276 (552)
T ss_pred chhhhhcCcccc-------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554322 11111111122344555567777666555544
No 151
>KOG0612|consensus
Probab=87.62 E-value=94 Score=39.68 Aligned_cols=67 Identities=15% Similarity=0.281 Sum_probs=32.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhh
Q psy5718 456 NYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGL 522 (720)
Q Consensus 456 n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~ 522 (720)
+|.-.-+.+.......++-...+......+.....++....+..-+++..+.++.+.+=.+.+..-.
T Consensus 571 e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~ 637 (1317)
T KOG0612|consen 571 ELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEE 637 (1317)
T ss_pred hhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3333333333333334444444444444444445555555555666666666666666555444433
No 152
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=87.49 E-value=27 Score=33.25 Aligned_cols=63 Identities=19% Similarity=0.307 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5718 444 KEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEM 509 (720)
Q Consensus 444 ke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~ 509 (720)
-+..++|..+...+..-..++..++.+.+.....|......+..- -..|..-...-++||.++
T Consensus 55 a~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~q---k~~le~e~~~~~~r~~dL 117 (132)
T PF07926_consen 55 AEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQ---KEQLEKELSELEQRIEDL 117 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHH
Confidence 344445555555555556666666666666666666555544332 223333334444555553
No 153
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=87.21 E-value=30 Score=33.56 Aligned_cols=75 Identities=27% Similarity=0.334 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHH
Q psy5718 390 YEQLQGEMTRLTQENESAKEEVKELITTAR------RDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQE 463 (720)
Q Consensus 390 ~~ql~~Ei~~~~q~~ekLkeq~eell~~~~------~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e 463 (720)
+..|+..+..+...++++..++.+...... ...+.++.++.-|.++++.+..-++++...|++.-++-++.-..
T Consensus 37 I~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRk 116 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERK 116 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 334444444444444444444422222111 22346777777777777777777777777777654444443333
Q ss_pred H
Q psy5718 464 V 464 (720)
Q Consensus 464 ~ 464 (720)
|
T Consensus 117 v 117 (143)
T PF12718_consen 117 V 117 (143)
T ss_pred H
Confidence 3
No 154
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=87.12 E-value=36 Score=34.74 Aligned_cols=74 Identities=19% Similarity=0.393 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q psy5718 403 ENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTE 476 (720)
Q Consensus 403 ~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~ 476 (720)
+..+++.+++..+...+.++..+..++..-.+-++.-.+.+..-.+.|+......++....++.+..+++.+..
T Consensus 61 e~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~ 134 (201)
T PF12072_consen 61 EAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIE 134 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444333333333333333333333333333333333333343333333333
No 155
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=86.38 E-value=59 Score=36.12 Aligned_cols=19 Identities=16% Similarity=0.170 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5718 283 ARKDLKGLEDTVTKELQTL 301 (720)
Q Consensus 283 ~~~~Lk~ei~~Lk~EL~~l 301 (720)
+...++.++..++.++..+
T Consensus 82 ~l~~l~~~~~~l~a~~~~l 100 (423)
T TIGR01843 82 DAAELESQVLRLEAEVARL 100 (423)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455566666666555544
No 156
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=86.29 E-value=13 Score=40.82 Aligned_cols=19 Identities=16% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5718 390 YEQLQGEMTRLTQENESAK 408 (720)
Q Consensus 390 ~~ql~~Ei~~~~q~~ekLk 408 (720)
+.++..|.+.+.....++.
T Consensus 18 ~~~~~~E~~~Y~~fL~~l~ 36 (314)
T PF04111_consen 18 LEQAEKERDTYQEFLKKLE 36 (314)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445555555444443
No 157
>PRK00106 hypothetical protein; Provisional
Probab=86.20 E-value=78 Score=37.33 Aligned_cols=29 Identities=24% Similarity=0.420 Sum_probs=11.3
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q psy5718 450 LEELAVNYDQKSQEVETKNKEFETLTEEL 478 (720)
Q Consensus 450 leel~~n~d~~~~e~e~~~~e~~~l~~el 478 (720)
|+......+.+.++++.+.++++.+..+.
T Consensus 127 Le~kekeLe~reeeLee~~~~~~~~~~~~ 155 (535)
T PRK00106 127 LESKEQSLTDKSKHIDEREEQVEKLEEQK 155 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444433333
No 158
>KOG4438|consensus
Probab=85.90 E-value=52 Score=37.28 Aligned_cols=96 Identities=19% Similarity=0.156 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhhhhcCCCcccccCCccccchhhhHHHH
Q psy5718 469 KEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVAR 548 (720)
Q Consensus 469 ~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 548 (720)
..++.|...+.+....-.++..+.+..+..+..-+-++-..+.-|.--|-|+...+-+. -+.-|....|+++| .+
T Consensus 180 e~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~Lktq-IV~sPeKL~~~lee----mk 254 (446)
T KOG4438|consen 180 ENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQ-IVQSPEKLKEALEE----MK 254 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHH----HH
Confidence 34455555555555566667778888887777767777777888888888887765443 22224456677776 56
Q ss_pred HHHhhhhhhHhhHhhhhcccc
Q psy5718 549 LYISKMKWRNGETVKEDEQVN 569 (720)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~ 569 (720)
+-|-|-|+=...++...+.|+
T Consensus 255 ~~l~k~k~~~~~l~~K~~iL~ 275 (446)
T KOG4438|consen 255 DLLQKEKSAMVELQEKAKILE 275 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777776666654
No 159
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.64 E-value=50 Score=40.34 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy5718 474 LTEELTLKQTTLNTTSTELQQIKDMSNHQKK 504 (720)
Q Consensus 474 l~~el~~~~~~~~~l~~el~~l~~~~~~~~k 504 (720)
..+||......+..+..-+++++...+.|+.
T Consensus 637 ~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~ 667 (717)
T PF10168_consen 637 FKKELERMKDQLQDLKASIEQLKKKLDYQQR 667 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555555543
No 160
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=85.46 E-value=68 Score=35.98 Aligned_cols=75 Identities=15% Similarity=0.197 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 424 QLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDM 498 (720)
Q Consensus 424 ~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~ 498 (720)
.-++-+....+|......-....-|+.-......+++.+++..+...+..-...|..+.+...-|+.|..+|..-
T Consensus 207 ~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~y 281 (499)
T COG4372 207 TRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAY 281 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555556666667777777788888877776666666666666667777777777777655
No 161
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=85.42 E-value=37 Score=32.84 Aligned_cols=94 Identities=24% Similarity=0.378 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhh
Q psy5718 382 LITTARRDYEQLQGEMTRLTQENESAKEEV---KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYD 458 (720)
Q Consensus 382 ~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~---eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d 458 (720)
..+.+......++.++.++...+++|+.++ +..+.........++.++..++.-+...++++.-+...+.....
T Consensus 53 ~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~t--- 129 (151)
T PF11559_consen 53 QREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKT--- 129 (151)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 344445555666667777777777777666 33334444444455555555555555556655554444443333
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q psy5718 459 QKSQEVETKNKEFETLTEEL 478 (720)
Q Consensus 459 ~~~~e~e~~~~e~~~l~~el 478 (720)
+...++.-+..|++.|.+.|
T Consensus 130 q~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 130 QYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33445556666666666554
No 162
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.41 E-value=11 Score=38.89 Aligned_cols=14 Identities=7% Similarity=0.321 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q psy5718 389 DYEQLQGEMTRLTQ 402 (720)
Q Consensus 389 l~~ql~~Ei~~~~q 402 (720)
+++.+.+++++..+
T Consensus 101 el~~l~~~l~~~~~ 114 (206)
T PRK10884 101 QVKTLTDKLNNIDN 114 (206)
T ss_pred HHHHHHHHHHHHHh
Confidence 33334444443333
No 163
>PRK12704 phosphodiesterase; Provisional
Probab=85.26 E-value=33 Score=40.31 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=8.5
Q ss_pred cchHhHHHHHHHhhhhHHH
Q psy5718 673 GLEDTVTKELQTLHNLRKL 691 (720)
Q Consensus 673 ~~~~tv~~el~~l~~l~~~ 691 (720)
||....+.=---||.+=|+
T Consensus 355 gld~~~a~~AgLLHDIGK~ 373 (520)
T PRK12704 355 GLDVKLAKRAGLLHDIGKA 373 (520)
T ss_pred CcCHHHHHHHHHHHccCcC
Confidence 4433334444445554443
No 164
>PRK11281 hypothetical protein; Provisional
Probab=85.18 E-value=1.3e+02 Score=38.81 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 464 VETKNKEFETLTEELTLKQTTLNTTSTELQQIKDM 498 (720)
Q Consensus 464 ~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~ 498 (720)
+......|..|+++|.+....++.+..+..+.+..
T Consensus 280 i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~ 314 (1113)
T PRK11281 280 VAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNW 314 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556778888888888888888887666555443
No 165
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=85.10 E-value=37 Score=38.16 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhhhhcCC
Q psy5718 500 NHQKKRINEMLTNLLKDLCEIGLVIGSE 527 (720)
Q Consensus 500 ~~~~kr~~e~~~~l~~dl~e~~~~~~~~ 527 (720)
.++-.|++++-..|-+ +=.+||.+
T Consensus 205 ~~~la~~a~LE~RL~~----LE~~lG~~ 228 (388)
T PF04912_consen 205 SQQLARAADLEKRLAR----LESALGID 228 (388)
T ss_pred hhHHHHHHHHHHHHHH----HHHHhCCC
Confidence 3566788887777655 88888885
No 166
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=85.08 E-value=50 Score=34.13 Aligned_cols=105 Identities=19% Similarity=0.324 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHH----HHHHHHHHHHHHH----HHHHHHH
Q psy5718 412 KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQE----VETKNKEFETLTE----ELTLKQT 483 (720)
Q Consensus 412 eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e----~e~~~~e~~~l~~----el~~~~~ 483 (720)
+--.....+.|+++..-+.-++..-+.++..+.+.+..+......|..-..- ++.-+.+++.++. ++.-+.+
T Consensus 89 E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa 168 (207)
T PF05010_consen 89 EKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQA 168 (207)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4444556666777777888888877888888877777777766666643322 3333555555544 3445666
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy5718 484 TLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDL 517 (720)
Q Consensus 484 ~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl 517 (720)
.+.-.+-.++.|.+.-..-.|...| |+.++-||
T Consensus 169 ~lkk~e~~~~SLe~~LeQK~kEn~E-LtkICDeL 201 (207)
T PF05010_consen 169 SLKKEEMKVQSLEESLEQKTKENEE-LTKICDEL 201 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 6666677777777777777777777 88888887
No 167
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=84.96 E-value=69 Score=35.60 Aligned_cols=16 Identities=13% Similarity=0.237 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy5718 286 DLKGLEDTVTKELQTL 301 (720)
Q Consensus 286 ~Lk~ei~~Lk~EL~~l 301 (720)
.+..++..++.++.++
T Consensus 78 ~~~~~l~~l~~~~~~l 93 (423)
T TIGR01843 78 DVEADAAELESQVLRL 93 (423)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 3444444454444444
No 168
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=84.70 E-value=0.83 Score=55.34 Aligned_cols=77 Identities=21% Similarity=0.365 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH---HHHHhhHHHHHHH------HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 418 ARRDYEQLQGEMTRLT---QENESAKEEVKEV------LQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTT 488 (720)
Q Consensus 418 ~~~~~e~lq~el~~lq---~e~~~~keevke~------~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l 488 (720)
...+..+|+.++..|+ ++..+.++|+.++ ...+|.-..+|.+|-+++...++++..|.+...........|
T Consensus 272 le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~L 351 (713)
T PF05622_consen 272 LEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAML 351 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555554443 4455556666554 455777788999999999999999988888777666666666
Q ss_pred HHHHHH
Q psy5718 489 STELQQ 494 (720)
Q Consensus 489 ~~el~~ 494 (720)
+.++..
T Consensus 352 Eeel~~ 357 (713)
T PF05622_consen 352 EEELKK 357 (713)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 665554
No 169
>KOG0249|consensus
Probab=84.70 E-value=60 Score=39.07 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy5718 438 SAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQ 482 (720)
Q Consensus 438 ~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~ 482 (720)
++.++..-+.+.++-++.+|++-...-+.+...++.|+.++.++-
T Consensus 213 aAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 213 AALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444444555555555444444555555555544443
No 170
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=84.69 E-value=31 Score=38.56 Aligned_cols=91 Identities=21% Similarity=0.364 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH
Q psy5718 419 RRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTS------TEL 492 (720)
Q Consensus 419 ~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~------~el 492 (720)
.+.++++..+=..|....+..-.+-+.+...|.+....|.+-+.-|.+++.++..++++|.+....|.+-. +=|
T Consensus 251 ~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPl 330 (359)
T PF10498_consen 251 SKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPL 330 (359)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHH
Confidence 33344444433344444444444444444444455555555555555555555555555554444333322 445
Q ss_pred HHHHHHHhHHHHHHHHH
Q psy5718 493 QQIKDMSNHQKKRINEM 509 (720)
Q Consensus 493 ~~l~~~~~~~~kr~~e~ 509 (720)
-++|.....-|+=|.+|
T Consensus 331 v~IKqAl~kLk~EI~qM 347 (359)
T PF10498_consen 331 VKIKQALTKLKQEIKQM 347 (359)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56666666666555543
No 171
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=84.49 E-value=20 Score=37.64 Aligned_cols=69 Identities=22% Similarity=0.346 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy5718 381 KLITTARRDYEQLQGEMTRLTQENESAKE---EVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQA 449 (720)
Q Consensus 381 k~~ee~~~l~~ql~~Ei~~~~q~~ekLke---q~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qa 449 (720)
+.+++...+...|..|......++-.+.+ .|+-.+.+++.+..+.+..+.++.+|+..+|++|.++...
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443333333322222 2477888888888889999999999999999999887766
No 172
>PRK00106 hypothetical protein; Provisional
Probab=84.47 E-value=74 Score=37.52 Aligned_cols=7 Identities=43% Similarity=0.762 Sum_probs=2.9
Q ss_pred hhhhHHH
Q psy5718 685 LHNLRKL 691 (720)
Q Consensus 685 l~~l~~~ 691 (720)
||.+=|.
T Consensus 382 LHDIGK~ 388 (535)
T PRK00106 382 LHDMGKA 388 (535)
T ss_pred HHhccCc
Confidence 4444443
No 173
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=84.35 E-value=1.2e+02 Score=37.98 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q psy5718 287 LKGLEDTVTKELQTLHNLR 305 (720)
Q Consensus 287 Lk~ei~~Lk~EL~~l~nlr 305 (720)
+..++..++..+..|.+..
T Consensus 230 l~~e~e~l~~~~~el~~~~ 248 (908)
T COG0419 230 LEQEIEALEERLAELEEEK 248 (908)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333
No 174
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=84.14 E-value=1.5e+02 Score=38.95 Aligned_cols=111 Identities=14% Similarity=0.186 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 413 ELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELA--------VNYDQKSQEVETKNKEFETLTEELTLKQTT 484 (720)
Q Consensus 413 ell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~--------~n~d~~~~e~e~~~~e~~~l~~el~~~~~~ 484 (720)
+.+...+.+++..+.++..++.+.+.++.+..++...+++|. ..+++-.+++++..+..+.....+..+...
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~~~~~~~~a~~~ 362 (1353)
T TIGR02680 283 RDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQAIREAESR 362 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555555555555444444443 222222233344444444444444455555
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhhhhcCC
Q psy5718 485 LNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSE 527 (720)
Q Consensus 485 ~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~~~~~~ 527 (720)
...+..++....+-...-.+.+.+ .+.+|...+...|=.
T Consensus 363 ~e~~~~~~~~~~~r~~~~~~~l~~----~~~el~~~a~~~~~~ 401 (1353)
T TIGR02680 363 LEEERRRLDEEAGRLDDAERELRA----AREQLARAAERAGLS 401 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcCCC
Confidence 555555555554444444444333 444666555555544
No 175
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=83.67 E-value=32 Score=38.34 Aligned_cols=96 Identities=26% Similarity=0.334 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH---h
Q psy5718 386 ARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDY---E----QLQGEMTRLTQENESAKEEVKEVLQALEELA---V 455 (720)
Q Consensus 386 ~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~---e----~lq~el~~lq~e~~~~keevke~~qaleel~---~ 455 (720)
...+.++|..-|.+...++..|..|-.+.-...+... + +.|.+-.++|.| -.+...-||||-+ +
T Consensus 283 veelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqae------c~rQ~qlaLEEKaaLrk 356 (442)
T PF06637_consen 283 VEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAE------CARQTQLALEEKAALRK 356 (442)
T ss_pred HHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 3445577777888888888888777743333322222 2 333334444442 2345566666532 2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 456 NYDQKSQEVETKNKEFETLTEELTLKQTTLNT 487 (720)
Q Consensus 456 n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~ 487 (720)
.-|--.++++++.++.+++..+++-+.+.+++
T Consensus 357 erd~L~keLeekkreleql~~q~~v~~saLdt 388 (442)
T PF06637_consen 357 ERDSLAKELEEKKRELEQLKMQLAVKTSALDT 388 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 33333455555555555555555555444443
No 176
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=83.46 E-value=22 Score=33.55 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy5718 422 YEQLQGEMTRLTQENESAKEEVKEVLQALEELAVN 456 (720)
Q Consensus 422 ~e~lq~el~~lq~e~~~~keevke~~qaleel~~n 456 (720)
+..+|+++..+-..-...+.+++|+..||+||..-
T Consensus 15 ~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l 49 (119)
T COG1382 15 LQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKL 49 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44556666666666666677777777777776543
No 177
>KOG0804|consensus
Probab=83.34 E-value=64 Score=36.84 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 472 ETLTEELTLKQTTLNTTSTELQQIKDM 498 (720)
Q Consensus 472 ~~l~~el~~~~~~~~~l~~el~~l~~~ 498 (720)
+.+.+.+..+.....+|+..|.+|--.
T Consensus 424 e~~~~~~~s~d~~I~dLqEQlrDlmf~ 450 (493)
T KOG0804|consen 424 EREKEALGSKDEKITDLQEQLRDLMFF 450 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhee
Confidence 334444444444555554444444333
No 178
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=83.31 E-value=49 Score=38.81 Aligned_cols=10 Identities=30% Similarity=0.418 Sum_probs=4.6
Q ss_pred HHHhhhhHHH
Q psy5718 682 LQTLHNLRKL 691 (720)
Q Consensus 682 l~~l~~l~~~ 691 (720)
--.||.+=|+
T Consensus 358 AGLLHDIGK~ 367 (514)
T TIGR03319 358 AGLLHDIGKA 367 (514)
T ss_pred HHHHHhcCcc
Confidence 3345554443
No 179
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=82.90 E-value=1.2e+02 Score=36.64 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5718 285 KDLKGLEDTVTKELQTL 301 (720)
Q Consensus 285 ~~Lk~ei~~Lk~EL~~l 301 (720)
..+..+++.+..++..+
T Consensus 219 ~~l~~~~e~l~~~i~~l 235 (650)
T TIGR03185 219 KEQSEKYEDLAQEIAHL 235 (650)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 180
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=82.08 E-value=64 Score=33.08 Aligned_cols=77 Identities=19% Similarity=0.279 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy5718 422 YEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQ-TTLNTTSTELQQIKDM 498 (720)
Q Consensus 422 ~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~-~~~~~l~~el~~l~~~ 498 (720)
|++-...+..+.........+++++...-+.|...|.+-.++-+++...++..-.++.++. -.+.-|+..+..|.+.
T Consensus 81 y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~ 158 (201)
T PF13851_consen 81 YEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQ 158 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444444444443332 2333334444444333
No 181
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=81.79 E-value=1.1e+02 Score=35.73 Aligned_cols=51 Identities=25% Similarity=0.383 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhHHHHHHH
Q psy5718 396 EMTRLTQENESAKEEVKELITTARRDYEQ----------LQGEMTRLTQENESAKEEVKEV 446 (720)
Q Consensus 396 Ei~~~~q~~ekLkeq~eell~~~~~~~e~----------lq~el~~lq~e~~~~keevke~ 446 (720)
++++...++.-+.+.++.++...+++++. +-.-+.++.+.|..+++|+..|
T Consensus 275 eld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V 335 (570)
T COG4477 275 ELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERV 335 (570)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555442 2224445556666666555443
No 182
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=81.50 E-value=10 Score=41.33 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q psy5718 385 TARRDYEQLQGEMTRLTQENESAKEEV---KELITTARRDYE 423 (720)
Q Consensus 385 e~~~l~~ql~~Ei~~~~q~~ekLkeq~---eell~~~~~~~e 423 (720)
.+|-.+.|||.|-..+.+.|+-||+.+ +|.++...+++.
T Consensus 95 kAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~ 136 (302)
T PF09738_consen 95 KAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYR 136 (302)
T ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888777 334444444433
No 183
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=81.17 E-value=35 Score=29.38 Aligned_cols=63 Identities=30% Similarity=0.382 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy5718 385 TARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE 451 (720)
Q Consensus 385 e~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qale 451 (720)
.+...++++-+.|.....+++.|+++-..+- ...+.|..+..+|+.+-.+..+-++-++..|+
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~----~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELK----EENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333444444445555555555544433222 33444555555555555555555555554443
No 184
>KOG0243|consensus
Probab=81.11 E-value=1.5e+02 Score=37.58 Aligned_cols=96 Identities=17% Similarity=0.256 Sum_probs=55.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 430 TRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVE--------------TKNKEFETLTEELTLKQTTLNTTSTELQQI 495 (720)
Q Consensus 430 ~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e--------------~~~~e~~~l~~el~~~~~~~~~l~~el~~l 495 (720)
..|+.+.+..+..+....+.|+.++..|.+-...+. ........|+..+...+..+.+|.+.|...
T Consensus 479 ~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~ 558 (1041)
T KOG0243|consen 479 ELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRK 558 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 355555555555555555555555555555443321 223335556666666777777777777766
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhHHhhhhc
Q psy5718 496 KDMSNHQKKRINEMLTNLLKDLCEIGLVIG 525 (720)
Q Consensus 496 ~~~~~~~~kr~~e~~~~l~~dl~e~~~~~~ 525 (720)
.....+.+.-|-++-..|+.-+.-+-..+.
T Consensus 559 ~~~~d~n~~~~~~~~~~l~~~~~~~~~~v~ 588 (1041)
T KOG0243|consen 559 DRLDDDNQEVIDDFQSQLSENLSTLHGLVA 588 (1041)
T ss_pred hccccccHHHHHHHhhhhhHHHHHHHHHHh
Confidence 666666666666666666665555554443
No 185
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=80.96 E-value=30 Score=35.55 Aligned_cols=99 Identities=18% Similarity=0.255 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q psy5718 398 TRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEE 477 (720)
Q Consensus 398 ~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~e 477 (720)
-+-+-++.-||+|+.+.-+..... -.+|-.|..-+..++..+......+.++...+..++.+++.-..+++....|
T Consensus 6 Cqk~GEIsLLKqQLke~q~E~~~K----~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~E 81 (202)
T PF06818_consen 6 CQKSGEISLLKQQLKESQAEVNQK----DSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNE 81 (202)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCH
Confidence 344455666777764433322221 2233334444444444444444444444555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy5718 478 LTLKQTTLNTTSTELQQIKDMSN 500 (720)
Q Consensus 478 l~~~~~~~~~l~~el~~l~~~~~ 500 (720)
..-+..++..++.|+..|++...
T Consensus 82 a~lLrekl~~le~El~~Lr~~l~ 104 (202)
T PF06818_consen 82 AELLREKLGQLEAELAELREELA 104 (202)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHH
Confidence 55555555556666666655433
No 186
>KOG0963|consensus
Probab=80.93 E-value=1.3e+02 Score=35.83 Aligned_cols=30 Identities=30% Similarity=0.267 Sum_probs=14.3
Q ss_pred cchhhhHHHHHHHhhhhhhHhhHhhhhccc
Q psy5718 539 KLEEEFTVARLYISKMKWRNGETVKEDEQV 568 (720)
Q Consensus 539 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (720)
.+..|-+-.|.--+-.++++-.+.++..++
T Consensus 387 ~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el 416 (629)
T KOG0963|consen 387 KLQNENASLRVANSGLSGRITELSKKGEEL 416 (629)
T ss_pred hhhHHHHHHhccccccchhHHHHHhhhhhh
Confidence 445555545544444455444444444433
No 187
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=80.92 E-value=62 Score=32.87 Aligned_cols=31 Identities=29% Similarity=0.496 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy5718 424 QLQGEMTRLTQENESAKEEVKEVLQALEELA 454 (720)
Q Consensus 424 ~lq~el~~lq~e~~~~keevke~~qaleel~ 454 (720)
.+..++..|..+++....++.++....+.+.
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~e 154 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLE 154 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444333
No 188
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=80.70 E-value=83 Score=33.77 Aligned_cols=112 Identities=21% Similarity=0.322 Sum_probs=59.2
Q ss_pred CCCchHHHhHHHHHhhhhHHHHHHHHHHHhhhhcccccchhHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 328 DGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLR-ATMERVKLITTARRDYEQLQGEMTRLTQENES 406 (720)
Q Consensus 328 ~~~~~~~~qki~~le~~Le~L~~~~~qLv~dn~~l~~elp~~~~~~~-~~~Er~k~~ee~~~l~~ql~~Ei~~~~q~~ek 406 (720)
+|-+....+||..++.+||.|.+..+|.--.-..+... +.+.-. .+.++.. ...+.++.+.|.+.-+.+....++
T Consensus 10 eGL~~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAa---LqKQKqK~e~ek~e-~s~LkREnq~l~e~c~~lek~rqK 85 (307)
T PF10481_consen 10 EGLPTRALQKIQELEQQLDKLKKERQQRQFQLESLEAA---LQKQKQKVEEEKNE-YSALKRENQSLMESCENLEKTRQK 85 (307)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHhhh-hhhhhhhhhhHHHHHHHHHHHHHH
Confidence 34455778999999999999987766532111111111 111111 1111111 112234444555544444444444
Q ss_pred HHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy5718 407 AKEEV----------KELITTARRDYEQLQGEMTRLTQENESAKEEV 443 (720)
Q Consensus 407 Lkeq~----------eell~~~~~~~e~lq~el~~lq~e~~~~keev 443 (720)
|--.+ +--+.++....++|.+++.++..|++.+....
T Consensus 86 lshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~ 132 (307)
T PF10481_consen 86 LSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAA 132 (307)
T ss_pred hhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33322 55566777777788888888877777665544
No 189
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=80.59 E-value=49 Score=30.73 Aligned_cols=38 Identities=16% Similarity=0.335 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5718 475 TEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNL 513 (720)
Q Consensus 475 ~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l 513 (720)
..++..+...+..+.++++.+.+.....+ ...++|..+
T Consensus 80 ~~ei~~l~~~l~~l~~~~~k~e~~l~~~~-~Y~~fL~~v 117 (126)
T PF13863_consen 80 EAEIKKLKAELEELKSEISKLEEKLEEYK-KYEEFLEKV 117 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 33333334444444444444444433333 234444443
No 190
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=80.54 E-value=78 Score=33.08 Aligned_cols=28 Identities=11% Similarity=0.268 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 468 NKEFETLTEELTLKQTTLNTTSTELQQI 495 (720)
Q Consensus 468 ~~e~~~l~~el~~~~~~~~~l~~el~~l 495 (720)
...+..|...|..........+.....|
T Consensus 175 e~~i~~L~~~lkeaE~Rae~aE~~v~~L 202 (237)
T PF00261_consen 175 EEKIRDLEEKLKEAENRAEFAERRVKKL 202 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 191
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=80.35 E-value=72 Score=32.55 Aligned_cols=68 Identities=26% Similarity=0.310 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy5718 386 ARRDYEQLQGEMTRLTQENESAKEEVKELITTARRD---YEQLQGEMTRLTQENESAKEEVKEVLQALEEL 453 (720)
Q Consensus 386 ~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~---~e~lq~el~~lq~e~~~~keevke~~qaleel 453 (720)
+...++-+++|+..+...+-.+.++-..+.+.++.- ...|-.++..||++|.....+...+.-.-.+|
T Consensus 58 al~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 58 ALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 333444445555555555555555554444443322 22233344455555555544444444443333
No 192
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=80.25 E-value=1.3e+02 Score=35.52 Aligned_cols=46 Identities=24% Similarity=0.377 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy5718 470 EFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLC 518 (720)
Q Consensus 470 e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~ 518 (720)
.++.|..++.+....+..+-.+|...+.... +++.+-++..|+||+
T Consensus 347 ~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a---~~l~~~v~~~l~~L~ 392 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKAAVALSLIRRKAA---ERLAKRVEQELKALA 392 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhCC
Confidence 4444444444444444555455554433321 233344455555544
No 193
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=80.21 E-value=1.5e+02 Score=36.19 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=28.6
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 450 LEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDM 498 (720)
Q Consensus 450 leel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~ 498 (720)
+.-+..-+.+....+..+.+++..++.--.+....+++.+.||-.+-|-
T Consensus 407 l~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEe 455 (717)
T PF09730_consen 407 LMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEE 455 (717)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3333333444455566666666666666666666666666666665554
No 194
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=80.16 E-value=2.1e+02 Score=37.76 Aligned_cols=26 Identities=4% Similarity=0.070 Sum_probs=14.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhh
Q psy5718 626 EKDEEINQQSQYAEKLKEQIMEQEEV 651 (720)
Q Consensus 626 ~lrdei~~k~~~~~~l~~~~~~~~~~ 651 (720)
.||+-|..-...|+..-..|....=+
T Consensus 1121 ~l~~ri~~A~~~v~~mN~~l~~~~~s 1146 (1353)
T TIGR02680 1121 HLQSLILAAERQVAAMNTELAKRPTS 1146 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 66666666666665555444333333
No 195
>KOG4302|consensus
Probab=80.09 E-value=1.3e+02 Score=36.25 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy5718 420 RDYEQLQGEMTRLTQENESAKEEVKEVLQALEEL 453 (720)
Q Consensus 420 ~~~e~lq~el~~lq~e~~~~keevke~~qaleel 453 (720)
+.++.+++.|+.|+.+...-.++|.+...++..|
T Consensus 160 ~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l 193 (660)
T KOG4302|consen 160 EKLEELREHLNELQKEKSDRLEKVLELKEEIKSL 193 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888888888888888877776666543
No 196
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=79.87 E-value=1.1e+02 Score=34.40 Aligned_cols=74 Identities=19% Similarity=0.186 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 424 QLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKD 497 (720)
Q Consensus 424 ~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~ 497 (720)
....|-.....|++.+.+|-+-|.+.+.++..||---.|++...++..++|..+|..+.+.-..|..+.+.|..
T Consensus 99 ~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a 172 (499)
T COG4372 99 AAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQA 172 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566777788888888888888999999999999999999999999988888877777777766543
No 197
>KOG0979|consensus
Probab=79.73 E-value=1.8e+02 Score=36.66 Aligned_cols=93 Identities=20% Similarity=0.326 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 416 TTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAV-------NYDQKSQEVETKNKEFETLTEELTLKQTTLNTT 488 (720)
Q Consensus 416 ~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~-------n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l 488 (720)
...+++|..+-....++..+.....++++.+.-.-++|.. .|++++.++.+-.......-+.+......+..+
T Consensus 244 ~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~ 323 (1072)
T KOG0979|consen 244 KKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEK 323 (1072)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666667777777777777666666555555 333333334333444444444444444444444
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q psy5718 489 STELQQIKDMSNHQKKRINE 508 (720)
Q Consensus 489 ~~el~~l~~~~~~~~kr~~e 508 (720)
..+++.++....+.-+||.-
T Consensus 324 ~~~le~lk~~~~~rq~~i~~ 343 (1072)
T KOG0979|consen 324 KNKLESLKKAAEKRQKRIEK 343 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555444444444444
No 198
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=79.59 E-value=1.8e+02 Score=36.59 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=10.7
Q ss_pred HhhhccchHhHHHHHHHhhhhHH
Q psy5718 668 RKDLKGLEDTVTKELQTLHNLRK 690 (720)
Q Consensus 668 ~~~~~~~~~tv~~el~~l~~l~~ 690 (720)
+..++-+++.+.++++.-.++..
T Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~ 682 (908)
T COG0419 660 EEKVEELEAEIRRELQRIENEEQ 682 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455544444444443
No 199
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=79.22 E-value=84 Score=32.66 Aligned_cols=93 Identities=15% Similarity=0.226 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 425 LQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKN--------KEFETLTEELTLKQTTLNTTSTELQQIK 496 (720)
Q Consensus 425 lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~--------~e~~~l~~el~~~~~~~~~l~~el~~l~ 496 (720)
+..+...+....+.+.........+++....+|+..-++++..+ ++++.+...+......++....++...-
T Consensus 98 ~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v 177 (236)
T cd07651 98 YTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKINSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAV 177 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556667777777777788888889999998888887665 4556666666666666666666666555
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q psy5718 497 DMSNHQKKRINEMLTNLLKDL 517 (720)
Q Consensus 497 ~~~~~~~kr~~e~~~~l~~dl 517 (720)
..-+..+.+...=|...+.++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~ 198 (236)
T cd07651 178 KALRELNEIWNREWKAALDDF 198 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 554444444333344444444
No 200
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=79.15 E-value=47 Score=34.96 Aligned_cols=43 Identities=14% Similarity=0.262 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhHHHHHHHH
Q psy5718 466 TKNKEFETLTEELTLKQTTLNTTSTELQQIKD-----MSNHQKKRINE 508 (720)
Q Consensus 466 ~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~-----~~~~~~kr~~e 508 (720)
++..+++.+..-..+..--|...-.+|+++=+ ......+|+..
T Consensus 88 ~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~ 135 (251)
T PF11932_consen 88 SLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQERLAR 135 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Confidence 33333333333333334444444444444333 13334556544
No 201
>KOG0249|consensus
Probab=79.13 E-value=1.1e+02 Score=37.14 Aligned_cols=68 Identities=24% Similarity=0.372 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5718 443 VKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLL 514 (720)
Q Consensus 443 vke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~ 514 (720)
.+|..+||+.. ..-.++++...+.++.+.-.-..+.+-..+|..|+.+|+..+.++..+..+.+.+-.
T Consensus 208 lkermaAle~k----n~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~~~~~~mrd~~~~~~ 275 (916)
T KOG0249|consen 208 LKERMAALEDK----NRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSLEKEQELRDHLRTYA 275 (916)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhcchhhhhH
Confidence 45666776642 223456777777777777777777788888888999998766666655555554433
No 202
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=78.94 E-value=1.7e+02 Score=35.89 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy5718 284 RKDLKGLEDTVTKELQTL 301 (720)
Q Consensus 284 ~~~Lk~ei~~Lk~EL~~l 301 (720)
..-|+.++..|++.|..+
T Consensus 389 ~QplrsENaqLrRrLril 406 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRIL 406 (861)
T ss_pred hhhhhhhhHHHHHHHHHH
Confidence 366777777777766555
No 203
>KOG1962|consensus
Probab=78.31 E-value=33 Score=35.59 Aligned_cols=61 Identities=23% Similarity=0.315 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 425 LQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTL 485 (720)
Q Consensus 425 lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~ 485 (720)
+..++..+.++.+.+++++++....|+.....++.-.++.+++..|..+|.++-+++++.+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 5666677777777777777777777777777777777777777777777777766655544
No 204
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=77.26 E-value=90 Score=31.92 Aligned_cols=30 Identities=30% Similarity=0.484 Sum_probs=21.4
Q ss_pred HHhHHHHHhhhhHHHHHHHHHHHhhhhccc
Q psy5718 334 QRQKISFLENNLDQLTKVHKQLVRDNADLR 363 (720)
Q Consensus 334 ~~qki~~le~~Le~L~~~~~qLv~dn~~l~ 363 (720)
-..+|..|.+.+..+......+..+|..|.
T Consensus 10 r~~ki~~L~n~l~elq~~l~~l~~ENk~Lk 39 (194)
T PF15619_consen 10 RLHKIKELQNELAELQRKLQELRKENKTLK 39 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888777777777777776654
No 205
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=76.99 E-value=1.1e+02 Score=32.56 Aligned_cols=99 Identities=22% Similarity=0.294 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH----HH---HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 412 KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVL----QA---LEELAVNYDQKSQEVETKNKEFETLTEELTLKQTT 484 (720)
Q Consensus 412 eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~----qa---leel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~ 484 (720)
+..+..+..-+.+.+..+...+.+++.+++.+++.+ .. |.++-..=..+..+.+.++..++..-+++..+...
T Consensus 152 e~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~ 231 (264)
T PF06008_consen 152 EDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQE 231 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444445554444443222 22 22222222335666777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy5718 485 LNTTSTELQQIKDMSNHQKKRINEML 510 (720)
Q Consensus 485 ~~~l~~el~~l~~~~~~~~kr~~e~~ 510 (720)
+.....++...=.+...--.....++
T Consensus 232 l~~~~~~~~~~L~~a~~~L~~a~~ll 257 (264)
T PF06008_consen 232 LSEQQNEVSETLKEAEDLLDQANDLL 257 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776666666555554444443
No 206
>KOG0804|consensus
Probab=76.78 E-value=1.3e+02 Score=34.59 Aligned_cols=56 Identities=27% Similarity=0.353 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q psy5718 422 YEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEE 477 (720)
Q Consensus 422 ~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~e 477 (720)
|+.+-.+...++.++..+..+.+-++..+-.+-...+.-..++.+.+.++..|.+.
T Consensus 356 ~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~kn 411 (493)
T KOG0804|consen 356 YELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKN 411 (493)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444444444444444444444444444444444444444444444433
No 207
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=76.50 E-value=1.1e+02 Score=32.32 Aligned_cols=41 Identities=29% Similarity=0.374 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhh
Q psy5718 421 DYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKS 461 (720)
Q Consensus 421 ~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~ 461 (720)
+|+.+..++..|+..|+.....|....+.+.+|....++-.
T Consensus 57 e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 57 EYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555554444443333
No 208
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=75.99 E-value=40 Score=39.81 Aligned_cols=52 Identities=27% Similarity=0.440 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q psy5718 415 ITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVET 466 (720)
Q Consensus 415 l~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~ 466 (720)
+....+...++...+.+|+.+|..++.++.++...+++|....++-..++..
T Consensus 417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~ 468 (652)
T COG2433 417 ITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRD 468 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555667777777777777777777777776666666666665555553
No 209
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=75.80 E-value=58 Score=28.99 Aligned_cols=79 Identities=22% Similarity=0.378 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhh---------------hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 420 RDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQ---------------KSQEVETKNKEFETLTEELTLKQTT 484 (720)
Q Consensus 420 ~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~---------------~~~e~e~~~~e~~~l~~el~~~~~~ 484 (720)
..+..++.++..+.......+.++++..-++++|..--+. +....+.+....+.+..++..+...
T Consensus 5 ~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~ 84 (106)
T PF01920_consen 5 NKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQ 84 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777888887788887765444 3444667777777777777777777
Q ss_pred HHHHHHHHHHHHHH
Q psy5718 485 LNTTSTELQQIKDM 498 (720)
Q Consensus 485 ~~~l~~el~~l~~~ 498 (720)
+..+..+++.++..
T Consensus 85 ~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 85 LKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777776654
No 210
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=75.43 E-value=0.9 Score=56.14 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5718 284 RKDLKGLEDTVTKELQT 300 (720)
Q Consensus 284 ~~~Lk~ei~~Lk~EL~~ 300 (720)
..+|..++..|..+|..
T Consensus 69 r~dL~~ELe~l~~~Lee 85 (859)
T PF01576_consen 69 RRDLSEELEELKERLEE 85 (859)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555544433
No 211
>PF13514 AAA_27: AAA domain
Probab=75.35 E-value=2.5e+02 Score=36.13 Aligned_cols=12 Identities=17% Similarity=-0.191 Sum_probs=6.2
Q ss_pred cccccccchhHH
Q psy5718 653 GLLVCGQTNERR 664 (720)
Q Consensus 653 ~~~~~~~~~~~~ 664 (720)
+-|.|.|++.++
T Consensus 1082 ~~QVI~FTch~~ 1093 (1111)
T PF13514_consen 1082 RRQVIYFTCHEH 1093 (1111)
T ss_pred CCeEEEEeccHH
Confidence 345555555444
No 212
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=74.64 E-value=55 Score=39.96 Aligned_cols=102 Identities=24% Similarity=0.382 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--hhh-------------------hhhhHHHHHHHHHHHHHHHH
Q psy5718 419 RRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELA--VNY-------------------DQKSQEVETKNKEFETLTEE 477 (720)
Q Consensus 419 ~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~--~n~-------------------d~~~~e~e~~~~e~~~l~~e 477 (720)
...+..|+.++..|+.++..+..++..+...|+.+. -.| ..+...++.+++|++.|...
T Consensus 502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~ 581 (722)
T PF05557_consen 502 SEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLAR 581 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888888888888888888888888887621 233 33556788888888888887
Q ss_pred HHHHH------------HHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHhHH
Q psy5718 478 LTLKQ------------TTLNTTSTELQQIKDMSNHQK---KRINEMLTNLLKDLCEI 520 (720)
Q Consensus 478 l~~~~------------~~~~~l~~el~~l~~~~~~~~---kr~~e~~~~l~~dl~e~ 520 (720)
+..+. ..+.....|+.+|+.....-. .|+.++++.-..+.-++
T Consensus 582 l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~a 639 (722)
T PF05557_consen 582 LRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKSQEFREA 639 (722)
T ss_dssp HHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 73322 112344556666666544333 35556666555555443
No 213
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=74.61 E-value=25 Score=29.69 Aligned_cols=56 Identities=20% Similarity=0.274 Sum_probs=39.3
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5718 451 EELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNL 513 (720)
Q Consensus 451 eel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l 513 (720)
..|+...|+-..-.+.++.||..|+.+ ..++..|-.+|.+....=+.||.-|++.|
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q-------~~~~~~ER~~L~ekne~Ar~rvEamI~RL 58 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQ-------EKTWREERAQLLEKNEQARQKVEAMITRL 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555555555666666666666665 45666777778888888889999998876
No 214
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=74.44 E-value=89 Score=32.62 Aligned_cols=86 Identities=21% Similarity=0.351 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 419 RRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDM 498 (720)
Q Consensus 419 ~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~ 498 (720)
+++|+.+...+..++.|++.+.++ |++|...|..-+..++.+..++..|.+.+..+--....|...+..|-+-
T Consensus 134 ke~~ee~kekl~E~~~EkeeL~~e-------leele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 134 KEDYEELKEKLEELQKEKEELLKE-------LEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 444555555555555555444333 4444444445555566666666666666666555555666555555544
Q ss_pred -HhHHHHHHHHHHH
Q psy5718 499 -SNHQKKRINEMLT 511 (720)
Q Consensus 499 -~~~~~kr~~e~~~ 511 (720)
.--.--+|.+++.
T Consensus 207 ~El~e~~~i~dl~~ 220 (290)
T COG4026 207 VELPEEELISDLVK 220 (290)
T ss_pred ccchHHHHHHHHHH
Confidence 2223345666555
No 215
>PRK11281 hypothetical protein; Provisional
Probab=74.11 E-value=2.5e+02 Score=36.32 Aligned_cols=49 Identities=12% Similarity=0.221 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5718 461 SQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEM 509 (720)
Q Consensus 461 ~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~ 509 (720)
.+++..-+.-.+-++....-.......++.+++.|++..+.+|..-+|.
T Consensus 212 ~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~ 260 (1113)
T PRK11281 212 RKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEK 260 (1113)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555566777788888888888888776665553
No 216
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=73.66 E-value=59 Score=35.54 Aligned_cols=49 Identities=24% Similarity=0.271 Sum_probs=25.1
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 449 ALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKD 497 (720)
Q Consensus 449 aleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~ 497 (720)
.|+++...|-+...++.+|.++++.+......+...+..|..+|.+..+
T Consensus 120 ~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rde 168 (302)
T PF09738_consen 120 KLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDE 168 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555556665555555555444445555555543333
No 217
>KOG2991|consensus
Probab=73.20 E-value=1.3e+02 Score=31.97 Aligned_cols=16 Identities=6% Similarity=0.040 Sum_probs=12.6
Q ss_pred cccccccchhhhhhhh
Q psy5718 226 TVARLYISKMKSEVKN 241 (720)
Q Consensus 226 ~hIPYRdSKLTrLLqd 241 (720)
.+||--.++-||+|-|
T Consensus 93 ~~v~a~e~~~~rll~d 108 (330)
T KOG2991|consen 93 AYVQALEGKYTRLLSD 108 (330)
T ss_pred HHHHHhcCcccchhHH
Confidence 5777778888888877
No 218
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=72.98 E-value=1.1e+02 Score=30.95 Aligned_cols=151 Identities=16% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------HHHHHHHHHHHHHHHhhhhhh
Q psy5718 390 YEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESA---------KEEVKEVLQALEELAVNYDQK 460 (720)
Q Consensus 390 ~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~---------keevke~~qaleel~~n~d~~ 460 (720)
++.++++...+.+++.+|...+ ..+......|.....+. ..-..+....|++....+++.
T Consensus 4 l~a~qe~Qq~qa~Lv~~LQ~KV-----------~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEE 72 (182)
T PF15035_consen 4 LDAYQEEQQRQAQLVQRLQAKV-----------LQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEE 72 (182)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhhhhcCCCcccccCCccccc
Q psy5718 461 SQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKL 540 (720)
Q Consensus 461 ~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~~~~~~~~~~~~~~~~~~~ 540 (720)
.+-.+++..-|.-|++.|.+....+.+|..++..|..--..-+.-+..=-.-.=.----|...+++. -++.+
T Consensus 73 qqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~e--------h~rll 144 (182)
T PF15035_consen 73 QQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSE--------HSRLL 144 (182)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--------ccHHH
Q ss_pred h--hhhHHHHHHHhhhhhhHh
Q psy5718 541 E--EEFTVARLYISKMKWRNG 559 (720)
Q Consensus 541 e--~~~~~~~~~~~~~~~~~~ 559 (720)
. .++...|-++.-||+...
T Consensus 145 ~LWr~v~~lRr~f~elr~~Te 165 (182)
T PF15035_consen 145 SLWREVVALRRQFAELRTATE 165 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 219
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=72.64 E-value=1.1e+02 Score=37.31 Aligned_cols=91 Identities=22% Similarity=0.317 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhH----HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q psy5718 424 QLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQ----EVETKNKEFETLTEELTL-------KQTTLNTTSTEL 492 (720)
Q Consensus 424 ~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~----e~e~~~~e~~~l~~el~~-------~~~~~~~l~~el 492 (720)
+|..-+..+.+||...-...+|-.+.|-+....||-... ||++--...+.+.-.|.. +.-++..-++|+
T Consensus 459 ellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi 538 (861)
T PF15254_consen 459 ELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEI 538 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHH
Confidence 333444444555555555555555555554444443221 223322222222222222 223344445677
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy5718 493 QQIKDMSNHQKKRINEMLTNLLKDLC 518 (720)
Q Consensus 493 ~~l~~~~~~~~kr~~e~~~~l~~dl~ 518 (720)
..|+++.-.-.. -|+.||-||+
T Consensus 539 ~RL~eLtR~LQ~----Sma~lL~dls 560 (861)
T PF15254_consen 539 ERLRELTRTLQN----SMAKLLSDLS 560 (861)
T ss_pred HHHHHHHHHHHH----HHHHHhhhcc
Confidence 777777544333 3445555544
No 220
>KOG1029|consensus
Probab=72.60 E-value=2.4e+02 Score=34.63 Aligned_cols=154 Identities=21% Similarity=0.262 Sum_probs=69.3
Q ss_pred HHhHHHHHhhhhHHHHHHHHHHHhhhhcccccchhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 334 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKE 413 (720)
Q Consensus 334 ~~qki~~le~~Le~L~~~~~qLv~dn~~l~~elp~~~~~~~~~~Er~k~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~ee 413 (720)
+..+...|.-.|+.|...+.+|-..--+.++.+.... ..-++-.+..+-.+..+.+|+..|.++++.+-+|-..-.+
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~k---t~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~ 511 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQK---TEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQE 511 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHH---HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 4444555666667777777776655555555442111 1112222333334444555555555555544444332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 414 LITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQ 493 (720)
Q Consensus 414 ll~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~ 493 (720)
+-...... .-....-+.-+.+++++......+.|++++ ..|.-++|.+.+-.+++.+.-.+.++.+..++.+.-.+
T Consensus 512 l~~qlkq~-q~a~~~~~~~~s~L~aa~~~ke~irq~ikd---qldelskE~esk~~eidi~n~qlkelk~~~~~q~lake 587 (1118)
T KOG1029|consen 512 LNHQLKQK-QSAHKETTQRKSELEAARRKKELIRQAIKD---QLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKE 587 (1118)
T ss_pred HHHHHHHh-hhhccCcchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 000111112234455555555555555443 33444555555555555555555555544444444333
Q ss_pred H
Q psy5718 494 Q 494 (720)
Q Consensus 494 ~ 494 (720)
+
T Consensus 588 ~ 588 (1118)
T KOG1029|consen 588 E 588 (1118)
T ss_pred H
Confidence 3
No 221
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=72.57 E-value=1.2e+02 Score=31.06 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhh
Q psy5718 417 TARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYD 458 (720)
Q Consensus 417 ~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d 458 (720)
+....+..|..+...+..|+.+.-.++..+...-..+-.+.|
T Consensus 78 ~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~ 119 (193)
T PF14662_consen 78 SLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERD 119 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Confidence 333444444444444445555444444444444333333333
No 222
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=72.57 E-value=59 Score=27.75 Aligned_cols=70 Identities=29% Similarity=0.360 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy5718 383 ITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 452 (720)
Q Consensus 383 ~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qalee 452 (720)
.+.....++.+..++......++.+.+....+......+...++..+..|+..-+.....+.+-.+.|++
T Consensus 36 ~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~Lee 105 (105)
T PF00435_consen 36 LEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELVEERRQKLEE 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4445556677778888888888888888888877777777888889999999888888888888888774
No 223
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=72.54 E-value=98 Score=30.11 Aligned_cols=12 Identities=8% Similarity=0.340 Sum_probs=5.3
Q ss_pred HHHhHHHHHHHH
Q psy5718 497 DMSNHQKKRINE 508 (720)
Q Consensus 497 ~~~~~~~kr~~e 508 (720)
.+...-+.||.+
T Consensus 87 k~lq~~q~kv~e 98 (140)
T PF10473_consen 87 KELQKKQEKVSE 98 (140)
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 224
>PF15294 Leu_zip: Leucine zipper
Probab=72.26 E-value=73 Score=34.40 Aligned_cols=43 Identities=33% Similarity=0.504 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 393 LQGEMTRLTQENESAKEEV---KELITTARRDYEQLQGEMTRLTQE 435 (720)
Q Consensus 393 l~~Ei~~~~q~~ekLkeq~---eell~~~~~~~e~lq~el~~lq~e 435 (720)
+..||.++..++++|+..+ +..-..+-++..+++.++..++..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~ 175 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDE 175 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678999999999998888 555555555666777777777663
No 225
>KOG0978|consensus
Probab=72.16 E-value=2.4e+02 Score=34.40 Aligned_cols=137 Identities=23% Similarity=0.277 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH---HHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHH
Q psy5718 382 LITTARRDYEQLQG----------EMTRLTQENESAKEEV---KELITTARRDYE-------QLQGEMTRLTQENESAKE 441 (720)
Q Consensus 382 ~~ee~~~l~~ql~~----------Ei~~~~q~~ekLkeq~---eell~~~~~~~e-------~lq~el~~lq~e~~~~ke 441 (720)
+++.+.++++++.+ +.....|....|.+.+ ++.+........ +++.++..++........
T Consensus 466 ~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~ 545 (698)
T KOG0978|consen 466 MQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIK 545 (698)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHH
Confidence 56666666666655 3334444444443333 333333333333 455555555666666666
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHh
Q psy5718 442 EVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIG 521 (720)
Q Consensus 442 evke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~ 521 (720)
+..-..++++.+..+--.--+.++.+..+.+.....|.+......++..||..++ -.++|+.|=+.-|=+=|..+|
T Consensus 546 el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~----~k~~rleEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 546 ELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEK----FKRKRLEEELERLKRKLERLK 621 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhc
Confidence 6666666666554443333333444444444444443333334444433333332 234788887777777666654
Q ss_pred h
Q psy5718 522 L 522 (720)
Q Consensus 522 ~ 522 (720)
.
T Consensus 622 ~ 622 (698)
T KOG0978|consen 622 K 622 (698)
T ss_pred c
Confidence 3
No 226
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=71.90 E-value=3e+02 Score=35.50 Aligned_cols=34 Identities=12% Similarity=0.182 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 464 VETKNKEFETLTEELTLKQTTLNTTSTELQQIKD 497 (720)
Q Consensus 464 ~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~ 497 (720)
+......|..|+++|.+....++.+..+..+.+.
T Consensus 260 i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~ 293 (1109)
T PRK10929 260 IVAQFKINRELSQALNQQAQRMDLIASQQRQAAS 293 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555567888888888888888877655554443
No 227
>PLN02939 transferase, transferring glycosyl groups
Probab=71.83 E-value=2.8e+02 Score=35.14 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy5718 283 ARKDLKGLEDTVTKELQT 300 (720)
Q Consensus 283 ~~~~Lk~ei~~Lk~EL~~ 300 (720)
+...|+++|..|+..|..
T Consensus 164 ~~~~~~~~~~~~~~~~~~ 181 (977)
T PLN02939 164 EKEALQGKINILEMRLSE 181 (977)
T ss_pred HHHHHHhhHHHHHHHhhh
Confidence 346788888888777765
No 228
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=71.20 E-value=88 Score=29.01 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=16.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 457 YDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQI 495 (720)
Q Consensus 457 ~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l 495 (720)
+++-...-..+..++..|..++..+.+....++..++.+
T Consensus 69 a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 69 AEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444444333
No 229
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=70.91 E-value=1.7e+02 Score=32.11 Aligned_cols=110 Identities=16% Similarity=0.213 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 413 ELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQ----KSQEVETKNKEFETLTEELTLKQTTLNTT 488 (720)
Q Consensus 413 ell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~----~~~e~e~~~~e~~~l~~el~~~~~~~~~l 488 (720)
-.+..+......+...+..++.+.+.++..++.....+.+-...++. ....+.+....+..+..+|......++..
T Consensus 74 ~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~ 153 (301)
T PF06120_consen 74 ANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLEQM 153 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555555554433332221111110 01113344555555555555555555555
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH-HhHHhhhhcC
Q psy5718 489 STELQQIKDMSNHQKKRINEMLTNLLKD-LCEIGLVIGS 526 (720)
Q Consensus 489 ~~el~~l~~~~~~~~kr~~e~~~~l~~d-l~e~~~~~~~ 526 (720)
....+.++.+.+....+..+ ++++ ..|++.++++
T Consensus 154 ~~k~~~~q~~l~~~~~~~~~----~ir~~~~e~~~~~~s 188 (301)
T PF06120_consen 154 QSKASETQATLNDLTEQRID----LIRQKAAEQAGAYNS 188 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 55555555554443333333 2343 4566665543
No 230
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=69.98 E-value=92 Score=30.86 Aligned_cols=13 Identities=31% Similarity=0.396 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q psy5718 502 QKKRINEMLTNLL 514 (720)
Q Consensus 502 ~~kr~~e~~~~l~ 514 (720)
-..|-+++|-.++
T Consensus 136 l~er~~e~l~~~~ 148 (158)
T PF09744_consen 136 LHERERELLRKLK 148 (158)
T ss_pred HHHHHHHHHHHHH
Confidence 3335555555443
No 231
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=69.74 E-value=20 Score=39.61 Aligned_cols=80 Identities=16% Similarity=0.264 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5718 422 YEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNH 501 (720)
Q Consensus 422 ~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~ 501 (720)
+++++.++...+...+..+.++.++...|..|...|+....+...+..+++.....|.....-+..|..|-..-.+....
T Consensus 223 l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~ 302 (344)
T PF12777_consen 223 LEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEE 302 (344)
T ss_dssp HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHH
Confidence 34445566666667777777777888888888888888777777777777777777766666666666665554444333
No 232
>PRK01156 chromosome segregation protein; Provisional
Probab=68.83 E-value=3.1e+02 Score=34.31 Aligned_cols=6 Identities=17% Similarity=0.335 Sum_probs=2.3
Q ss_pred HHHHHh
Q psy5718 71 KVYDEA 76 (720)
Q Consensus 71 eVY~~~ 76 (720)
.|++.+
T Consensus 38 sileAI 43 (895)
T PRK01156 38 SIVDAI 43 (895)
T ss_pred HHHHHH
Confidence 344333
No 233
>KOG1962|consensus
Probab=68.46 E-value=35 Score=35.47 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q psy5718 412 KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKN 468 (720)
Q Consensus 412 eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~ 468 (720)
++..+....+.+++..++.+.+.+.+.+...+.++.--.+++-..||.-..+-..++
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq 206 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQ 206 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 455566666677777777777777777777777776666666666665544433333
No 234
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=68.41 E-value=1.6e+02 Score=31.06 Aligned_cols=6 Identities=50% Similarity=0.512 Sum_probs=2.1
Q ss_pred HHHHHH
Q psy5718 623 QLDEKD 628 (720)
Q Consensus 623 q~~~lr 628 (720)
|+..|+
T Consensus 190 QL~~L~ 195 (246)
T PF00769_consen 190 QLKELK 195 (246)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 235
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=67.75 E-value=1.3e+02 Score=29.77 Aligned_cols=94 Identities=23% Similarity=0.305 Sum_probs=57.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy5718 431 RLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEML 510 (720)
Q Consensus 431 ~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~ 510 (720)
.|+-+|....+.+.|-...|..|...|-...+.+.-.+.....+..++......+......+..+++....-+..... +
T Consensus 46 qLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k-~ 124 (177)
T PF13870_consen 46 QLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDK-L 124 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 444455555555555566666777777777777777777777777777777777777777777777665555444333 2
Q ss_pred HHHHHHHhHHhhhhc
Q psy5718 511 TNLLKDLCEIGLVIG 525 (720)
Q Consensus 511 ~~l~~dl~e~~~~~~ 525 (720)
......|..=|..++
T Consensus 125 ~~~~~~l~~~~~~~~ 139 (177)
T PF13870_consen 125 RKQNKKLRQQGGLLG 139 (177)
T ss_pred HHHHHHHHHhcCCCC
Confidence 233333444444443
No 236
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=67.53 E-value=92 Score=30.68 Aligned_cols=74 Identities=24% Similarity=0.350 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 422 YEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQI 495 (720)
Q Consensus 422 ~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l 495 (720)
|......+....+..+....++.+++.-|.+|..+|..-+..-.......+.|-.+-..+..-..++.+.|.=+
T Consensus 2 y~~y~~~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF 75 (157)
T PF04136_consen 2 YRQYLDYLQQYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYF 75 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 56677788888888899999999999999999999977666555555555555555444444444444444433
No 237
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=67.35 E-value=2.4e+02 Score=32.53 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q psy5718 488 TSTELQQIKDMSNHQKKRINE 508 (720)
Q Consensus 488 l~~el~~l~~~~~~~~kr~~e 508 (720)
.+.++..|+.-....++-...
T Consensus 353 ~~~el~~L~Re~~~~~~~Y~~ 373 (498)
T TIGR03007 353 VEAELTQLNRDYEVNKSNYEQ 373 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443333333333
No 238
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=66.96 E-value=50 Score=36.53 Aligned_cols=126 Identities=20% Similarity=0.302 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHH
Q psy5718 426 QGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLN-TTSTELQQIKDMSNHQKK 504 (720)
Q Consensus 426 q~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~-~l~~el~~l~~~~~~~~k 504 (720)
.+|...|+.|.+..++-.+...++++++..--+.-+..+.--++.+..+...+........ .-...++++++.....+.
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~ 82 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRC 82 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHh
Confidence 4566677777777777778888888888888788888877777778888877776654322 233556666666666666
Q ss_pred HHHHHHHHHHHHHhH-HhhhhcCCCcccccCC-ccccchhhhHHHHHHHh
Q psy5718 505 RINEMLTNLLKDLCE-IGLVIGSEGDMKVTSD-GAGKLEEEFTVARLYIS 552 (720)
Q Consensus 505 r~~e~~~~l~~dl~e-~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~ 552 (720)
.+.||...|-+-=|= ...++|+- .+..+.. ..=+.-+|+--=|+|++
T Consensus 83 ~l~DmEa~LPkkNGlyL~liLGnV-NVsll~k~~kf~yKdEYEkFKl~~t 131 (330)
T PF07851_consen 83 QLFDMEAFLPKKNGLYLRLILGNV-NVSLLSKQAKFKYKDEYEKFKLYLT 131 (330)
T ss_pred hHHHHHhhCCCCCCcccceecccc-cceecccccccchhhhHHHHHHHHH
Confidence 777777555433111 12355654 5543332 22256677666666654
No 239
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=66.78 E-value=2.6e+02 Score=32.76 Aligned_cols=74 Identities=14% Similarity=0.134 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhhhhcCCCcccccCCccccchhhhHHHHHHHhhhhhhHhhHhhhhcc
Q psy5718 489 STELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDEQ 567 (720)
Q Consensus 489 ~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (720)
-.-|.+.++....+.++|.+.+.+|-.|+.+|..-.-.. -++++++|+-|+..-=.=|.-|+-|+.+++.-...
T Consensus 400 lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~-----Ksd~d~kIdtE~k~R~~eV~~vRqELa~lLssvQ~ 473 (531)
T PF15450_consen 400 LEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVSDKCDLH-----KSDSDTKIDTEGKAREREVGAVRQELATLLSSVQL 473 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-----HhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677888888888899999999999999998876554 56789999999995556688899999887765443
No 240
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=66.53 E-value=2.6e+02 Score=32.71 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy5718 616 ERERLYQQLDEKDEEINQ 633 (720)
Q Consensus 616 ~~~~~~~q~~~lrdei~~ 633 (720)
-|.+|.-|+|++...+.+
T Consensus 414 ek~al~lqlErl~~~l~~ 431 (511)
T PF09787_consen 414 EKNALRLQLERLETQLKE 431 (511)
T ss_pred hhhhccccHHHHHHHHHh
Confidence 567777777777666653
No 241
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=66.47 E-value=2e+02 Score=31.36 Aligned_cols=73 Identities=12% Similarity=0.221 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 425 LQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKD 497 (720)
Q Consensus 425 lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~ 497 (720)
.+...+.|..+.--+.+-++|---+||-.-....|....+.+....+++=.+.+..-..+-.+++..|.+|+-
T Consensus 156 aesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~Qlqs 228 (305)
T PF14915_consen 156 AESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQS 228 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444555555555555556666666666666655555555555555555555555543
No 242
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=66.12 E-value=2.8e+02 Score=32.84 Aligned_cols=112 Identities=17% Similarity=0.233 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH-------HHHHHHHH
Q psy5718 412 KELITTARRDYEQLQGEMTRLTQENESA---KEEVKEVLQALEELAVNYDQKSQEVETKNKEFET-------LTEELTLK 481 (720)
Q Consensus 412 eell~~~~~~~e~lq~el~~lq~e~~~~---keevke~~qaleel~~n~d~~~~e~e~~~~e~~~-------l~~el~~~ 481 (720)
.+.+.++...++.+..++....+..+.- -+++.+-+..+..++..|...-..+-....+++. ..+.+..+
T Consensus 272 ~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L 351 (563)
T TIGR00634 272 AEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEAL 351 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3344444445555555555554444322 3556666667777777776443333222222222 22234444
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhHHhhh
Q psy5718 482 QTTLNTTSTELQQIKDMSNHQKKRINE-MLTNLLKDLCEIGLV 523 (720)
Q Consensus 482 ~~~~~~l~~el~~l~~~~~~~~kr~~e-~~~~l~~dl~e~~~~ 523 (720)
...+..+..++..+-......|+.++. +-..+..-|.++|..
T Consensus 352 ~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l~~L~m~ 394 (563)
T TIGR00634 352 EEEVDKLEEELDKAAVALSLIRRKAAERLAKRVEQELKALAME 394 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 445555555555544444444444433 334445555555543
No 243
>KOG1853|consensus
Probab=65.77 E-value=1.9e+02 Score=30.81 Aligned_cols=54 Identities=24% Similarity=0.308 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy5718 396 EMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQA 449 (720)
Q Consensus 396 Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qa 449 (720)
+.+++..+.+.+|+..+.-.....+....|..+++++.+--+....+|++++||
T Consensus 67 ~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQa 120 (333)
T KOG1853|consen 67 RNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQA 120 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444444455555555555555555555554
No 244
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.88 E-value=63 Score=34.63 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5718 617 RERLYQQLDEKDEEINQQSQYAEKLKEQ 644 (720)
Q Consensus 617 ~~~~~~q~~~lrdei~~k~~~~~~l~~~ 644 (720)
..-++.++..|.....++...|..++.+
T Consensus 178 ~~e~e~~~~~L~~qk~e~~~l~~~~aa~ 205 (265)
T COG3883 178 QNELETQLNSLNSQKAEKNALIAALAAK 205 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666667888888888888666665
No 245
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=64.75 E-value=48 Score=34.53 Aligned_cols=66 Identities=32% Similarity=0.529 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy5718 376 TMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKE 445 (720)
Q Consensus 376 ~~Er~k~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke 445 (720)
+..++....++.++|..+.........+.+.|...+++ ...+|+.+|.++.+|.-||..+.+..+-
T Consensus 123 tL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~elee----le~e~ee~~erlk~le~E~s~LeE~~~~ 188 (290)
T COG4026 123 TLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEE----LEAEYEEVQERLKRLEVENSRLEEMLKK 188 (290)
T ss_pred HHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344445555555544444444444444444333322 2334555555555555555554444443
No 246
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=64.44 E-value=61 Score=33.19 Aligned_cols=33 Identities=21% Similarity=0.461 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 464 VETKNKEFETLTEELTLKQTTLNTTSTELQQIK 496 (720)
Q Consensus 464 ~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~ 496 (720)
+...+..++.+.+.+.-+...+.+-+.||++|+
T Consensus 162 l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 162 LKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555555555555555666666666666654
No 247
>KOG0978|consensus
Probab=64.42 E-value=3.4e+02 Score=33.18 Aligned_cols=92 Identities=24% Similarity=0.325 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 412 KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTE 491 (720)
Q Consensus 412 eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~e 491 (720)
++...........+-.++..++.-.+..+-.+.|+.+.++.|...-+...+.+++.......++.+|....-...-++.|
T Consensus 530 eeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE 609 (698)
T KOG0978|consen 530 EEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEE 609 (698)
T ss_pred HHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444556667777777777788888888888888888888888888888888888888887777777777777
Q ss_pred HHHHHHHHhHHH
Q psy5718 492 LQQIKDMSNHQK 503 (720)
Q Consensus 492 l~~l~~~~~~~~ 503 (720)
++.|+..-...+
T Consensus 610 ~e~L~~kle~~k 621 (698)
T KOG0978|consen 610 LERLKRKLERLK 621 (698)
T ss_pred HHHHHHHHHHhc
Confidence 777766544443
No 248
>KOG0018|consensus
Probab=64.15 E-value=4e+02 Score=33.97 Aligned_cols=13 Identities=23% Similarity=0.539 Sum_probs=7.2
Q ss_pred ecceecCCCCChH
Q psy5718 58 LFDKVFKPNATQE 70 (720)
Q Consensus 58 ~FD~VF~~~asQe 70 (720)
.|..|-||+.+-.
T Consensus 26 ~FTaIIGPNGSGK 38 (1141)
T KOG0018|consen 26 RFTAIIGPNGSGK 38 (1141)
T ss_pred hceeeeCCCCCch
Confidence 4556666655443
No 249
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=63.85 E-value=1e+02 Score=27.05 Aligned_cols=66 Identities=23% Similarity=0.296 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy5718 386 ARRDYEQLQGEMTRLTQENESAKEEV---KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE 451 (720)
Q Consensus 386 ~~~l~~ql~~Ei~~~~q~~ekLkeq~---eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qale 451 (720)
+...+++.=+.|.-++.+++.||++- .+....++...+.|..+..+|++|-.+=.+-++-++-.++
T Consensus 9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344444445555555555555543 2333333444455666666666666666666665555443
No 250
>KOG4657|consensus
Probab=63.23 E-value=2e+02 Score=30.17 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5718 474 LTEELTLKQTTLNTTSTELQQIKDMSNHQK 503 (720)
Q Consensus 474 l~~el~~~~~~~~~l~~el~~l~~~~~~~~ 503 (720)
...++.-+...+-.+..|+..+++....++
T Consensus 98 ~q~elEvl~~n~Q~lkeE~dd~keiIs~kr 127 (246)
T KOG4657|consen 98 TQSELEVLRRNLQLLKEEKDDSKEIISQKR 127 (246)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 333333333344444455555555555555
No 251
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=62.97 E-value=2.4e+02 Score=34.90 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy5718 464 VETKNKEFETLTEELT 479 (720)
Q Consensus 464 ~e~~~~e~~~l~~el~ 479 (720)
+++.+++.+++-.++.
T Consensus 579 l~~a~~~~~~~i~~lk 594 (782)
T PRK00409 579 IKEAKKEADEIIKELR 594 (782)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 252
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=62.70 E-value=1.7e+02 Score=29.08 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHH
Q psy5718 440 KEEVKEVLQALEELAVNYDQKSQE 463 (720)
Q Consensus 440 keevke~~qaleel~~n~d~~~~e 463 (720)
.+.+.++...|.++.....+-...
T Consensus 127 ~~~~~~~~~~l~~i~~~~~~i~~~ 150 (213)
T PF00015_consen 127 SESVEETSESLEEIAESVEEISDS 150 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhcchhhhhhhhhhhHHhhh
Confidence 333344444444444444333333
No 253
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=62.53 E-value=54 Score=32.32 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhhHHHHHH
Q psy5718 426 QGEMTRLTQENESAKEEVKE 445 (720)
Q Consensus 426 q~el~~lq~e~~~~keevke 445 (720)
+.++..++.+...+..++..
T Consensus 85 ~~el~~l~~~~k~l~~eL~~ 104 (169)
T PF07106_consen 85 REELAELKKEVKSLEAELAS 104 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 254
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=62.43 E-value=2.4e+02 Score=34.85 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy5718 464 VETKNKEFETLTEELT 479 (720)
Q Consensus 464 ~e~~~~e~~~l~~el~ 479 (720)
+++.+++.+.+-.++.
T Consensus 574 ~~~a~~~~~~~i~~lk 589 (771)
T TIGR01069 574 LKALKKEVESIIRELK 589 (771)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444443
No 255
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.06 E-value=2.3e+02 Score=30.49 Aligned_cols=127 Identities=22% Similarity=0.267 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---------HHHHHHHHHHh--hhh
Q psy5718 390 YEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVK---------EVLQALEELAV--NYD 458 (720)
Q Consensus 390 ~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevk---------e~~qaleel~~--n~d 458 (720)
...+++++++..+++.+++.++.++....+..-+.|-.++.-++. |-.+-.|+. |+...+-.+.+ .||
T Consensus 68 ~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~-nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aD 146 (265)
T COG3883 68 IDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV-NGTATSYIDVILNSKSFSDLISRVTAISVIVDAD 146 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCChhHHHHHHHccCcHHHHHHHHHHHHHHHHHh
Confidence 334444555555555555555554444444444444444444443 222333442 34444443332 233
Q ss_pred hhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy5718 459 QKSQE-VETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDL 517 (720)
Q Consensus 459 ~~~~e-~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl 517 (720)
.+.-+ .++..+.++.-..-+..+..++.++..|++.....-+.|+.--..++..|--+.
T Consensus 147 k~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~ 206 (265)
T COG3883 147 KKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKE 206 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222 233344444444444445555555555555555544444444444444444333
No 256
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=61.70 E-value=2.6 Score=52.17 Aligned_cols=22 Identities=9% Similarity=0.062 Sum_probs=0.0
Q ss_pred cchhHHHHhhhCCCCCCcchhh
Q psy5718 570 LADPVDMAASIAPTPESAPASI 591 (720)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~ 591 (720)
|.+.-.++|..++.+...+.+|
T Consensus 509 l~eKeeE~E~~Rr~~qr~l~~l 530 (859)
T PF01576_consen 509 LQEKEEEFEETRRNHQRQLESL 530 (859)
T ss_dssp ----------------------
T ss_pred HHhhhhHHHHHHHhhHHHHHHH
Confidence 3344444555555555555555
No 257
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=61.60 E-value=50 Score=28.92 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5718 464 VETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEM 509 (720)
Q Consensus 464 ~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~ 509 (720)
|++++.++..|..+.......-.+|..|.++||+--+.=..|+.-+
T Consensus 27 ieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 27 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444555555555555544444444433
No 258
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=61.41 E-value=13 Score=45.27 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy5718 282 QARKDLKGLEDTVTKELQTLH 302 (720)
Q Consensus 282 ~~~~~Lk~ei~~Lk~EL~~l~ 302 (720)
.++..++-++..|+.++..|.
T Consensus 305 ~el~~lq~e~~~Le~el~sW~ 325 (722)
T PF05557_consen 305 EELAELQLENEKLEDELNSWE 325 (722)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344566666677777777773
No 259
>KOG0993|consensus
Probab=61.29 E-value=94 Score=35.12 Aligned_cols=59 Identities=29% Similarity=0.393 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy5718 393 LQGEMTRLTQENESAKEEVKELITTARR--DYEQLQGEMTRLTQENESAKEEVKEVLQALE 451 (720)
Q Consensus 393 l~~Ei~~~~q~~ekLkeq~eell~~~~~--~~e~lq~el~~lq~e~~~~keevke~~qale 451 (720)
|..+..++.|.-++++..+..+..-..+ ....|.+++.+-+++.+...+=|--.+....
T Consensus 105 leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~ 165 (542)
T KOG0993|consen 105 LEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEIN 165 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHH
Confidence 4446666667667766666444444444 3345666666666655555554444443333
No 260
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=60.60 E-value=69 Score=36.97 Aligned_cols=28 Identities=21% Similarity=0.410 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy5718 419 RRDYEQLQGEMTRLTQENESAKEEVKEV 446 (720)
Q Consensus 419 ~~~~e~lq~el~~lq~e~~~~keevke~ 446 (720)
..+.+.|..|..+|+.+.......+...
T Consensus 79 ~~~N~~l~~eN~~L~~r~~~id~~i~~a 106 (472)
T TIGR03752 79 ISENEALKAENERLQKREQSIDQQIQQA 106 (472)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3334444445555555554444444443
No 261
>KOG4360|consensus
Probab=60.42 E-value=3.4e+02 Score=31.85 Aligned_cols=208 Identities=21% Similarity=0.275 Sum_probs=107.7
Q ss_pred hhhHHHHHHHHHHHhhhhcccccch--hHHHhhhhhHHHH------HHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q psy5718 343 NNLDQLTKVHKQLVRDNADLRCELP--KLEKRLRATMERV------KLITTA-------RRDYEQLQGEMTRLTQENESA 407 (720)
Q Consensus 343 ~~Le~L~~~~~qLv~dn~~l~~elp--~~~~~~~~~~Er~------k~~ee~-------~~l~~ql~~Ei~~~~q~~ekL 407 (720)
..++.|++..+.+..+|..++.+.- +.+...-...|.+ |-+-.. .+++++.-++.++++.++.+|
T Consensus 159 ~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skL 238 (596)
T KOG4360|consen 159 ELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKL 238 (596)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777778877776542 1122111222222 111111 223344444666777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH------------
Q psy5718 408 KEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLT------------ 475 (720)
Q Consensus 408 keq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~------------ 475 (720)
..++- +...+.--+.-+...+-+-+.+.++--+++...++|+.+.|.+--+...+-.-++..|+
T Consensus 239 lsql~----d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~~~p~~~s~~~ 314 (596)
T KOG4360|consen 239 LSQLV----DLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRSCDAPKLISQEA 314 (596)
T ss_pred HHHHH----hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHH
Confidence 66651 11111111222233333334444444555555566666666655555544444444332
Q ss_pred -------------HH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHhHHhhhhcCCCcccccCCccc
Q psy5718 476 -------------EE-LTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLL---KDLCEIGLVIGSEGDMKVTSDGAG 538 (720)
Q Consensus 476 -------------~e-l~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~---~dl~e~~~~~~~~~~~~~~~~~~~ 538 (720)
.| +.-.+.+.-++..+.+.+.-++..++|||-+....+. +-++++..++-. -++-
T Consensus 315 ~~~~~~fp~~~~aae~i~lt~r~~~qldee~s~~~t~~~~eq~~I~e~ve~i~~ts~q~a~l~~~l~i--------~~~n 386 (596)
T KOG4360|consen 315 LSHGHHFPQLSLAAEKIELTMRKNLQLDEEASQLDTLEDEEQKRIFETVEQINETSQQMAELPEVLVI--------PGSN 386 (596)
T ss_pred HHhhhhCChhhHHHHHHHHhhhhhhccccccccCCccchHHHHHHHHHHHHHHHHHHHHHhccccccC--------Ccch
Confidence 11 2223456667778888888888888999887654432 233333322211 1222
Q ss_pred cchhhhHHHHHHHhhhhhhHhhHhhhhcc
Q psy5718 539 KLEEEFTVARLYISKMKWRNGETVKEDEQ 567 (720)
Q Consensus 539 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (720)
-..---||+|+.++--| ++++|+-
T Consensus 387 y~~~~~tv~~~~v~tp~-----lqq~~n~ 410 (596)
T KOG4360|consen 387 YSSQQQTVARLQVQTPK-----LQQRCNM 410 (596)
T ss_pred hhhhhhhhhhhhccchh-----HHhHHHH
Confidence 22344688998887766 8899876
No 262
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=60.28 E-value=2e+02 Score=29.20 Aligned_cols=65 Identities=22% Similarity=0.248 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 428 EMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETK-NKEFETLTEELTLKQTTLNTTSTEL 492 (720)
Q Consensus 428 el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~-~~e~~~l~~el~~~~~~~~~l~~el 492 (720)
....+..++...+.+..++...+.++...++.-.+..++. ..+.....+|+.-+...+..|..+|
T Consensus 121 ~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 121 GKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666666666655554443332 2233333444444444444443333
No 263
>KOG4673|consensus
Probab=59.97 E-value=3.9e+02 Score=32.47 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy5718 282 QARKDLKGLEDTVTKELQTL 301 (720)
Q Consensus 282 ~~~~~Lk~ei~~Lk~EL~~l 301 (720)
++...|+.++..|+.+|+..
T Consensus 423 kERDalr~e~kslk~ela~~ 442 (961)
T KOG4673|consen 423 KERDALRREQKSLKKELAAA 442 (961)
T ss_pred HhHHHHHHHHHHHHHHHHHh
Confidence 44567777888888877653
No 264
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=59.78 E-value=3.3e+02 Score=31.54 Aligned_cols=57 Identities=19% Similarity=0.354 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhh
Q psy5718 405 ESAKEEVKELIT----------TARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKS 461 (720)
Q Consensus 405 ekLkeq~eell~----------~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~ 461 (720)
.+|++-+++|+. .+.+.+..||.-+...|-.+..++.+..-+.-.|+.++.||-.-.
T Consensus 365 nkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQ 431 (527)
T PF15066_consen 365 NKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQ 431 (527)
T ss_pred HHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHH
Confidence 355555555543 445556677888888888888888888877778888888886443
No 265
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=59.42 E-value=2.7e+02 Score=30.41 Aligned_cols=109 Identities=20% Similarity=0.340 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q psy5718 399 RLTQENESAKEEV---KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLT 475 (720)
Q Consensus 399 ~~~q~~ekLkeq~---eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~ 475 (720)
....+++.++... .+.+.....+......+|..+-.+.+..+.+..+.-..+.++.. .+++...++.++.
T Consensus 162 el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~-------~~~e~~ee~~~~~ 234 (294)
T COG1340 162 ELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSK-------KIDELHEEFRNLQ 234 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHH
Confidence 3333444444433 33333334444455566777776666666666665555555444 4455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHH
Q psy5718 476 EELTLKQTTLNTTSTELQQIKDMSNHQ--KKRINEMLTNLL 514 (720)
Q Consensus 476 ~el~~~~~~~~~l~~el~~l~~~~~~~--~kr~~e~~~~l~ 514 (720)
.++......+.+|....-..+...... +.|..++...+-
T Consensus 235 ~elre~~k~ik~l~~~~~~~~~~~~~ee~kera~ei~EKfk 275 (294)
T COG1340 235 NELRELEKKIKALRAKEKAAKRREKREELKERAEEIYEKFK 275 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555666666666655555554444 666666655554
No 266
>KOG2751|consensus
Probab=59.09 E-value=2.5e+02 Score=32.21 Aligned_cols=76 Identities=22% Similarity=0.280 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q psy5718 390 YEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNK 469 (720)
Q Consensus 390 ~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~ 469 (720)
+.-+.+|+..+.+.++.|+++-..- +++.+..++..+..| =+.++|.|+++.++-++-...+.+++.
T Consensus 152 ~~~~~~e~~~Y~~~l~~Le~~~~~~------~~~~~~~e~~~l~~e-------E~~L~q~lk~le~~~~~l~~~l~e~~~ 218 (447)
T KOG2751|consen 152 VEDAEDEVDTYKACLQRLEQQNQDV------SEEDLLKELKNLKEE-------EERLLQQLEELEKEEAELDHQLKELEF 218 (447)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCccc------chHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666777777766554221 333344444444333 334444455544444444444444444
Q ss_pred HHHHHHHHH
Q psy5718 470 EFETLTEEL 478 (720)
Q Consensus 470 e~~~l~~el 478 (720)
+-+.+.++-
T Consensus 219 ~~~~~~e~~ 227 (447)
T KOG2751|consen 219 KAERLNEEE 227 (447)
T ss_pred HHHHHHHHH
Confidence 444444433
No 267
>PF15294 Leu_zip: Leucine zipper
Probab=58.95 E-value=1.8e+02 Score=31.49 Aligned_cols=22 Identities=45% Similarity=0.619 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHH
Q psy5718 424 QLQGEMTRLTQENESAKEEVKE 445 (720)
Q Consensus 424 ~lq~el~~lq~e~~~~keevke 445 (720)
-++.++.+|++||+++++-++-
T Consensus 129 ll~kEi~rLq~EN~kLk~rl~~ 150 (278)
T PF15294_consen 129 LLNKEIDRLQEENEKLKERLKS 150 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888887777665
No 268
>PLN02939 transferase, transferring glycosyl groups
Probab=58.24 E-value=2.3e+02 Score=35.97 Aligned_cols=88 Identities=25% Similarity=0.254 Sum_probs=43.2
Q ss_pred hhcccccchhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5718 359 NADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENES 438 (720)
Q Consensus 359 n~~l~~elp~~~~~~~~~~Er~k~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~ 438 (720)
..+++.++..++.++..+..+.|+..+...-.+-+ ...+++|.+.+-........-.--+-.++.-|++||-.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (977)
T PLN02939 165 KEALQGKINILEMRLSETDARIKLAAQEKIHVEIL-------EEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENML 237 (977)
T ss_pred HHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhh-------HHHHHHHhhhhhccccccccccccHHHHHHHHHHHhHH
Confidence 34455555556665666666666655432211111 12223333333111111111111356677888888888
Q ss_pred hHHHHHHHHHHHHHH
Q psy5718 439 AKEEVKEVLQALEEL 453 (720)
Q Consensus 439 ~keevke~~qaleel 453 (720)
.|+.+.-+-++|-+.
T Consensus 238 ~~~~~~~~~~~~~~~ 252 (977)
T PLN02939 238 LKDDIQFLKAELIEV 252 (977)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777666666543
No 269
>KOG0239|consensus
Probab=57.60 E-value=4.3e+02 Score=32.23 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy5718 422 YEQLQGEMTRLTQENESAKEEVKEVLQALEE 452 (720)
Q Consensus 422 ~e~lq~el~~lq~e~~~~keevke~~qalee 452 (720)
+..+|.++..+..+...+++.+..+...+++
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~ 273 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQE 273 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444
No 270
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=57.48 E-value=98 Score=28.67 Aligned_cols=38 Identities=24% Similarity=0.311 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy5718 473 TLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEML 510 (720)
Q Consensus 473 ~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~ 510 (720)
.+..++..+...+..+-.|-..|+--..|-|+|+.++-
T Consensus 19 ~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 19 QLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333444444444444444444455555543
No 271
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=57.42 E-value=50 Score=33.77 Aligned_cols=41 Identities=17% Similarity=0.379 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHHHHHH
Q psy5718 407 AKEEVKELITTARRDYEQLQG-------EMTRLTQENESAKEEVKEVL 447 (720)
Q Consensus 407 Lkeq~eell~~~~~~~e~lq~-------el~~lq~e~~~~keevke~~ 447 (720)
++.|+++||.-.++.+..+.. -+..+.++++..++.|.-++
T Consensus 133 vk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~Le 180 (195)
T PF12761_consen 133 VKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDGLE 180 (195)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 577778888877777766642 34455555555555554433
No 272
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=57.22 E-value=2.5e+02 Score=29.42 Aligned_cols=73 Identities=19% Similarity=0.211 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhhhhcCCCcccccCCccccchhhhHHHHHHHhhhhhhHhhHh
Q psy5718 483 TTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETV 562 (720)
Q Consensus 483 ~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 562 (720)
....++..+++.|+......|.--.+..+.|++=|+|+..-+ .++|+.|-+.=-.-++.+++++..++
T Consensus 121 ~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l------------~~~i~~Ek~~Re~~~~~l~~~le~~~ 188 (247)
T PF06705_consen 121 ELNQELVRELNELQEAFENERNEREEREENILKRLEEEENRL------------QEKIEKEKNTRESKLSELRSELEEVK 188 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888888888888877888888888888876554 23457777655677888888888887
Q ss_pred hhhcc
Q psy5718 563 KEDEQ 567 (720)
Q Consensus 563 ~~~~~ 567 (720)
..+..
T Consensus 189 ~~~~~ 193 (247)
T PF06705_consen 189 RRREK 193 (247)
T ss_pred HHHhh
Confidence 76533
No 273
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=57.10 E-value=1.6e+02 Score=27.06 Aligned_cols=35 Identities=17% Similarity=0.401 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhhhhcCC
Q psy5718 487 TTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSE 527 (720)
Q Consensus 487 ~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~~~~~~ 527 (720)
.+..++..++.--...| +...++.+.+. |.|+|++
T Consensus 55 ~~~~~l~~~~~~lk~~r-~~~~v~k~v~q-----~lI~gSg 89 (106)
T PF05837_consen 55 ELSEKLEKLEKELKKSR-QRWRVMKNVFQ-----ALIVGSG 89 (106)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHH-----HHHHhcC
Confidence 34445555544444444 44677888876 6677776
No 274
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=57.09 E-value=97 Score=28.04 Aligned_cols=34 Identities=35% Similarity=0.524 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy5718 421 DYEQLQGEMTRLTQENESAKEEVKEVLQALEELA 454 (720)
Q Consensus 421 ~~e~lq~el~~lq~e~~~~keevke~~qaleel~ 454 (720)
+.+.+..++..+..+....++++.++...+..+.
T Consensus 68 ~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 68 DAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666777777777776666666666544
No 275
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=56.38 E-value=1e+02 Score=28.51 Aligned_cols=45 Identities=36% Similarity=0.482 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy5718 393 LQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQ 448 (720)
Q Consensus 393 l~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~q 448 (720)
+...+.+....+..||.++.+ +-.|.++|+-||+.+.+-+.+..+
T Consensus 13 le~~l~~l~~~~~~LK~~~~~-----------l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 13 LEQQLGQLLEELEELKKQLQE-----------LLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333555555555555555533 334455556666655555555443
No 276
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=56.38 E-value=73 Score=31.41 Aligned_cols=12 Identities=42% Similarity=0.684 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q psy5718 442 EVKEVLQALEEL 453 (720)
Q Consensus 442 evke~~qaleel 453 (720)
++..+...|+.|
T Consensus 124 e~~~l~~kL~~l 135 (169)
T PF07106_consen 124 EIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 277
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=56.18 E-value=1.8e+02 Score=32.52 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 476 EELTLKQTTLNTTSTELQQIKDM 498 (720)
Q Consensus 476 ~el~~~~~~~~~l~~el~~l~~~ 498 (720)
.-|++|.+++..|+..|..++..
T Consensus 187 ~vLNeKK~KIR~lq~~L~~~~~~ 209 (342)
T PF06632_consen 187 LVLNEKKAKIRELQRLLASAKEE 209 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHhhcc
Confidence 34555666666666666666654
No 278
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=56.03 E-value=2.2e+02 Score=28.25 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 385 TARRDYEQLQGEMTRLTQENESA 407 (720)
Q Consensus 385 e~~~l~~ql~~Ei~~~~q~~ekL 407 (720)
++.++..+..+-..+....++.+
T Consensus 83 eir~LA~~t~~~~~~I~~~i~~i 105 (213)
T PF00015_consen 83 EIRKLAEQTSESAKEISEIIEEI 105 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhHHHHHHHHHhhh
Confidence 33333333333333333333333
No 279
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=55.37 E-value=3.2e+02 Score=30.05 Aligned_cols=17 Identities=24% Similarity=0.347 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5718 285 KDLKGLEDTVTKELQTL 301 (720)
Q Consensus 285 ~~Lk~ei~~Lk~EL~~l 301 (720)
..|+.+...|+.++...
T Consensus 30 ~sL~qen~~Lk~El~~e 46 (310)
T PF09755_consen 30 ESLQQENRVLKRELETE 46 (310)
T ss_pred HHHHHHhHHHHHHHHHH
Confidence 44444444444444443
No 280
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=55.35 E-value=2e+02 Score=27.77 Aligned_cols=71 Identities=27% Similarity=0.315 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy5718 383 ITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEL 453 (720)
Q Consensus 383 ~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel 453 (720)
.+...+.++.+..++......++.+....+.+......+...+...+..|...-......+.+-...|+..
T Consensus 35 ~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~ 105 (213)
T cd00176 35 VEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEA 105 (213)
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666667766677777776666666666555556677777777777776666666666665553
No 281
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=54.83 E-value=2e+02 Score=27.63 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy5718 416 TTARRDYEQLQGEMTRLTQENESAKEEVK 444 (720)
Q Consensus 416 ~~~~~~~e~lq~el~~lq~e~~~~keevk 444 (720)
.....+.+.++..+.+|+.+++.++-++.
T Consensus 62 ~~l~~d~~~l~~~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 62 RRLRSDIERLQNDVERLKEQLEELERELA 90 (151)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555544444444444
No 282
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=54.63 E-value=85 Score=31.59 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy5718 468 NKEFETLTEELTLKQTTLNTT 488 (720)
Q Consensus 468 ~~e~~~l~~el~~~~~~~~~l 488 (720)
..|++.+..||..+...+.++
T Consensus 160 ~~ei~~lk~el~~~~~~~~~L 180 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEAL 180 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444443333333333
No 283
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=54.52 E-value=3.6e+02 Score=30.43 Aligned_cols=27 Identities=30% Similarity=0.197 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 378 ERVKLITTARRDYEQLQGEMTRLTQEN 404 (720)
Q Consensus 378 Er~k~~ee~~~l~~ql~~Ei~~~~q~~ 404 (720)
.+.|...|+...+.+++.+-.+|.+.+
T Consensus 321 akek~~KEAqareaklqaec~rQ~qla 347 (442)
T PF06637_consen 321 AKEKAGKEAQAREAKLQAECARQTQLA 347 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777778888777777654
No 284
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=54.38 E-value=3.4e+02 Score=30.11 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy5718 412 KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQA 449 (720)
Q Consensus 412 eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qa 449 (720)
|+++...+.+...+|-+++.++.+...-.+|...+...
T Consensus 133 E~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrE 170 (401)
T PF06785_consen 133 EGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRE 170 (401)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHH
Confidence 55555555555555555555555554444444444333
No 285
>KOG0999|consensus
Probab=54.10 E-value=4.4e+02 Score=31.25 Aligned_cols=62 Identities=19% Similarity=0.210 Sum_probs=27.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHh
Q psy5718 456 NYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIG 521 (720)
Q Consensus 456 n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~ 521 (720)
...|.-+++...+.|++.+............+++.+--.|++-...-|-| .+.|+.|-+|+-
T Consensus 115 eLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfR----E~RllseYSELE 176 (772)
T KOG0999|consen 115 ELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFR----EARLLSEYSELE 176 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 33344444444444444444443333333333333333333333333333 456777877753
No 286
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=54.02 E-value=58 Score=32.14 Aligned_cols=57 Identities=23% Similarity=0.315 Sum_probs=42.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5718 459 QKSQEVETKNKEFETLTEELT------------LKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLK 515 (720)
Q Consensus 459 ~~~~e~e~~~~e~~~l~~el~------------~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~ 515 (720)
..+.+...+++|+.++.+|+. ++..+++.+..|++++++.....+..+...++.++.
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~ 105 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLW 105 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH--
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666777776663 567889999999999999999999988888777654
No 287
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=53.48 E-value=3.1e+02 Score=31.27 Aligned_cols=96 Identities=19% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHhhhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHH
Q psy5718 415 ITTARRDYEQLQGEMTRLTQENESAKE----EVKEVLQALEELAVNYDQKSQEVETK----NKEFETLTEELTLKQTTLN 486 (720)
Q Consensus 415 l~~~~~~~e~lq~el~~lq~e~~~~ke----evke~~qaleel~~n~d~~~~e~e~~----~~e~~~l~~el~~~~~~~~ 486 (720)
+.....++..++....+|+...+.+++ ++..+.++|.|-.-.|..--.+|.+. ..|+.+|..+|+....++.
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~ 293 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMA 293 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred -HHHHHHHHHHHHHhHHHHHHHHHH
Q psy5718 487 -TTSTELQQIKDMSNHQKKRINEML 510 (720)
Q Consensus 487 -~l~~el~~l~~~~~~~~kr~~e~~ 510 (720)
......-++.|....-.-||..|.
T Consensus 294 Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 294 YQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
No 288
>PRK10869 recombination and repair protein; Provisional
Probab=52.95 E-value=4.6e+02 Score=31.12 Aligned_cols=18 Identities=22% Similarity=0.148 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHhhhhh
Q psy5718 442 EVKEVLQALEELAVNYDQ 459 (720)
Q Consensus 442 evke~~qaleel~~n~d~ 459 (720)
++.+-+..+..|+.+|-.
T Consensus 300 ~ie~Rl~~l~~L~rKyg~ 317 (553)
T PRK10869 300 ELEQRLSKQISLARKHHV 317 (553)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 344444445555555553
No 289
>KOG4603|consensus
Probab=52.93 E-value=2.6e+02 Score=28.21 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy5718 414 LITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 450 (720)
Q Consensus 414 ll~~~~~~~e~lq~el~~lq~e~~~~keevke~~qal 450 (720)
.++....+..+|+..+..|+........|++++-.+|
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L 116 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL 116 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444455556666666666666666666655554
No 290
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=52.86 E-value=4.1e+02 Score=30.58 Aligned_cols=28 Identities=11% Similarity=0.074 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy5718 481 KQTTLNTTSTELQQIKDMSNHQKKRINE 508 (720)
Q Consensus 481 ~~~~~~~l~~el~~l~~~~~~~~kr~~e 508 (720)
....+..|+++.+..++.-..-.+|..+
T Consensus 353 ~~~el~~L~Re~~~~~~~Y~~l~~r~ee 380 (498)
T TIGR03007 353 VEAELTQLNRDYEVNKSNYEQLLTRRES 380 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666665555555555554
No 291
>KOG0288|consensus
Probab=52.77 E-value=3.9e+02 Score=30.49 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHH
Q psy5718 406 SAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQE 463 (720)
Q Consensus 406 kLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e 463 (720)
.-..+++..+++....+..+..++..+..+.++.+..+.+.+.+|..|.+.-+|-..+
T Consensus 13 qr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~ 70 (459)
T KOG0288|consen 13 QRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEE 70 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344557778888888888888999999999999888888888777776665555554
No 292
>KOG4807|consensus
Probab=52.73 E-value=3.9e+02 Score=30.26 Aligned_cols=68 Identities=26% Similarity=0.301 Sum_probs=46.3
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Q psy5718 452 ELAVNYDQKSQEVETKNKEFETLTEELTLKQ-------TTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCE 519 (720)
Q Consensus 452 el~~n~d~~~~e~e~~~~e~~~l~~el~~~~-------~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e 519 (720)
+|.|-..-|--++.=+++|+.-|.+||.-.. -+-.++.+||+-.|..+.-.--|+.|-|..-+-.|+|
T Consensus 509 ELEVLLRVKEsEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSiaKakadcdIsrLKEqLkaAteALgE 583 (593)
T KOG4807|consen 509 ELEVLLRVKESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIAKAKADCDISRLKEQLKAATEALGE 583 (593)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHhcc
Confidence 4555555666677778888888888875332 3456778888888877776666777766666655554
No 293
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=52.34 E-value=4.7 Score=46.65 Aligned_cols=76 Identities=17% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 422 YEQLQGEMTRLTQENESAKEEVKEVLQALEE-LAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKD 497 (720)
Q Consensus 422 ~e~lq~el~~lq~e~~~~keevke~~qalee-l~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~ 497 (720)
++.=..+|.++|+|-+.---.+..-+.+.|| |...+-.....++.|.+=|+.....+..+.+.+.-|-+-|.+||+
T Consensus 417 LedSE~RLr~QQ~eKd~qmksII~RL~~vEeELrre~~~m~~~~~~kqrii~aQ~~~i~~Ldaan~Rl~sal~~lk~ 493 (495)
T PF12004_consen 417 LEDSEERLRRQQEEKDSQMKSIISRLMAVEEELRREHAEMQAVLDHKQRIIDAQEKRIAALDAANSRLMSALTQLKE 493 (495)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred hhhhHHHHHHHhhhhHHHHHHHHhhhhhhhhhhhhhHHHHhcccccchHHHHHhhhhcccccccccccccccccccc
Confidence 3333334445555444444444444444443 444444444445555555555555555555555555555555543
No 294
>KOG0982|consensus
Probab=52.22 E-value=4.2e+02 Score=30.44 Aligned_cols=137 Identities=20% Similarity=0.144 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhhhhcccccchhHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 347 QLTKVHKQLVRDNADLRCELPKLEKRL-RATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQL 425 (720)
Q Consensus 347 ~L~~~~~qLv~dn~~l~~elp~~~~~~-~~~~Er~k~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~l 425 (720)
.++-...+|-.+|..+|...|-+.... .-..++.+....+..+..|+-.+......+.++|.. +.+...++..-.+.+
T Consensus 301 nlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrr-fq~ekeatqELieel 379 (502)
T KOG0982|consen 301 NLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRR-FQEEKEATQELIEEL 379 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHH
Confidence 334445667778888877664222111 123344444444444444444444444444444433 333333333333333
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 426 QGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTST 490 (720)
Q Consensus 426 q~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~ 490 (720)
..++.+++.+.-...--+.=.- +.....--|+|+.+++.+-.|++.-.+++.++.++..
T Consensus 380 rkelehlr~~kl~~a~p~rgrs------SaRe~eleqevkrLrq~nr~l~eqneelngtilTls~ 438 (502)
T KOG0982|consen 380 RKELEHLRRRKLVLANPVRGRS------SAREIELEQEVKRLRQPNRILSEQNEELNGTILTLST 438 (502)
T ss_pred HHHHHHHHHHHHHhhccccCch------hHHHHHHHHHHHHhccccchhhhhhhhhhhhhhhHHH
Confidence 3344444332221110000000 0001111245666666666666665556666655543
No 295
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=52.15 E-value=1.5e+02 Score=25.44 Aligned_cols=55 Identities=11% Similarity=0.253 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 443 VKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKD 497 (720)
Q Consensus 443 vke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~ 497 (720)
+..++..-+.|...-...+..+..+++.+..+...+..+...+..+..+++.|++
T Consensus 14 Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 14 IAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555555555555555555555555555554
No 296
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.59 E-value=1.6e+02 Score=25.34 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy5718 422 YEQLQGEMTRLTQENESAKEEVKEVL 447 (720)
Q Consensus 422 ~e~lq~el~~lq~e~~~~keevke~~ 447 (720)
.+.|+.+...|+.+-..-.+-++.++
T Consensus 48 reaL~~eneqlk~e~~~WQerlrsLL 73 (79)
T COG3074 48 REALERENEQLKEEQNGWQERLRALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333333333333
No 297
>KOG0999|consensus
Probab=51.46 E-value=4.8e+02 Score=30.94 Aligned_cols=124 Identities=22% Similarity=0.262 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHH
Q psy5718 376 TMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELIT---TARRDYEQLQGEMTRLTQENESAKEEVK---EVLQA 449 (720)
Q Consensus 376 ~~Er~k~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~---~~~~~~e~lq~el~~lq~e~~~~keevk---e~~qa 449 (720)
+.....-.-++..+.+|+..++.+-..+++++..-..+++. ..+.+.-++..++...+-+....-.+-- |-...
T Consensus 102 E~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIs 181 (772)
T KOG0999|consen 102 EEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENIS 181 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 33334444455666777777777777777776555433322 2222222333333333333222222222 22233
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5718 450 LEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQK 503 (720)
Q Consensus 450 leel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~ 503 (720)
|....-+..+..-+.++++-+|-.|.++..-++..+ .|...||+...+|-
T Consensus 182 LQKqVs~LR~sQVEyEglkheikRleEe~elln~q~----ee~~~Lk~IAekQl 231 (772)
T KOG0999|consen 182 LQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQL----EEAIRLKEIAEKQL 231 (772)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 444556677777778888888888888755333332 34455555555543
No 298
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=51.26 E-value=2.4e+02 Score=27.33 Aligned_cols=57 Identities=14% Similarity=0.086 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 429 MTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTL 485 (720)
Q Consensus 429 l~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~ 485 (720)
+..++.+++.+...++...+.+..++--+..-++...........|..++....+.+
T Consensus 21 ~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l 77 (135)
T TIGR03495 21 LRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALL 77 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333333333333333333333333333333333333
No 299
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=50.76 E-value=2.9e+02 Score=28.22 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=10.4
Q ss_pred hhHHHHHHHhhhhhhHhhHhh
Q psy5718 543 EFTVARLYISKMKWRNGETVK 563 (720)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~ 563 (720)
.|-=.+=+|..|-.++.....
T Consensus 166 ~~er~e~ki~~~ea~a~a~~e 186 (221)
T PF04012_consen 166 SFERMEEKIEEMEARAEASAE 186 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555544443
No 300
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=50.37 E-value=2.7e+02 Score=27.69 Aligned_cols=88 Identities=25% Similarity=0.357 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Q psy5718 422 YEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELT-LKQTTLNTTSTELQQIKDMSN 500 (720)
Q Consensus 422 ~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~-~~~~~~~~l~~el~~l~~~~~ 500 (720)
.+....+..+++.|++..+.+|.++...-..|...|..-...+.+-++.+...+++-. .-=.+...++-+|.-+++-..
T Consensus 22 ~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~ 101 (159)
T PF05384_consen 22 AEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREK 101 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777777777777777777777777777777777766655433 222344445555555555555
Q ss_pred HHHHHHHHH
Q psy5718 501 HQKKRINEM 509 (720)
Q Consensus 501 ~~~kr~~e~ 509 (720)
.-++|-.++
T Consensus 102 qLr~rRD~L 110 (159)
T PF05384_consen 102 QLRERRDEL 110 (159)
T ss_pred HHHHHHHHH
Confidence 555444443
No 301
>KOG2751|consensus
Probab=49.85 E-value=1.8e+02 Score=33.23 Aligned_cols=41 Identities=27% Similarity=0.305 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHH
Q psy5718 423 EQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQE 463 (720)
Q Consensus 423 e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e 463 (720)
++|-+++-++..+.+....++.++...-+++-..-++..++
T Consensus 193 ~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~e 233 (447)
T KOG2751|consen 193 ERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWRE 233 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555554444443333333333
No 302
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=49.78 E-value=2.1e+02 Score=26.27 Aligned_cols=50 Identities=26% Similarity=0.268 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy5718 391 EQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAK 440 (720)
Q Consensus 391 ~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~k 440 (720)
.-|..++..+.++.+-+.++-+-+...--..++.+-.+...+-.+.....
T Consensus 8 ~~L~~~~~~~~~L~~ll~~e~~~l~~~d~~~l~~~~~~k~~l~~~l~~le 57 (143)
T PF05130_consen 8 ELLEEQIELLQELLELLEEEREALISGDIDELEELVEEKQELLEELRELE 57 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555554444444433333333333334433333333
No 303
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=49.75 E-value=65 Score=28.86 Aligned_cols=84 Identities=14% Similarity=0.204 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHhHHhhhhcCCCcccccCCccccchhhhHHHH
Q psy5718 475 TEELTLKQTTLNTTSTELQQIKDMSN------HQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVAR 548 (720)
Q Consensus 475 ~~el~~~~~~~~~l~~el~~l~~~~~------~~~kr~~e~~~~l~~dl~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 548 (720)
.+++......+.++......+..... ..++-+...+.++--||.|+-.+|.-. +-. | ..=|.-+.|.+-=|
T Consensus 7 ~~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~iv-e~n-p-~kF~l~~~Ei~~Rr 83 (97)
T PF09177_consen 7 KDEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRIV-EKN-P-SKFNLSEEEISRRR 83 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCC-H-HHHT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhC-c-cccCCCHHHHHHHH
Confidence 34444455555555555555555433 556677777888888888888877542 111 2 22267789999999
Q ss_pred HHHhhhhhhHhhH
Q psy5718 549 LYISKMKWRNGET 561 (720)
Q Consensus 549 ~~~~~~~~~~~~~ 561 (720)
-||+.++.+|+.|
T Consensus 84 ~fv~~~~~~i~~~ 96 (97)
T PF09177_consen 84 QFVSAIRNQIKQM 96 (97)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999876
No 304
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.73 E-value=1.7e+02 Score=25.16 Aligned_cols=48 Identities=23% Similarity=0.342 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy5718 463 EVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEML 510 (720)
Q Consensus 463 e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~ 510 (720)
++++++.++..|..|.........+|++|-++||.-...=..||.-+|
T Consensus 26 EieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL 73 (79)
T COG3074 26 EIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL 73 (79)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666777777777777777666666665544
No 305
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=49.73 E-value=2.9e+02 Score=27.93 Aligned_cols=82 Identities=21% Similarity=0.329 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy5718 426 QGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKR 505 (720)
Q Consensus 426 q~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr 505 (720)
..++..|+.||..+..-+.|...+|+-.--+|.+....+--..+... . ...+. --+.+.+....+..|
T Consensus 69 n~qi~~Lq~EN~eL~~~leEhq~alelIM~KyReq~~~l~~~~k~~~--~------~~~~~----~~~~~~~~~~~~~~k 136 (181)
T PF05769_consen 69 NRQIRQLQQENRELRQSLEEHQSALELIMSKYREQMSQLMMASKFDD--T------EPYLE----ANEQLSKEVQSQAEK 136 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--h------hHHHH----HHHHHHHHHhhHHHH
Confidence 34578899999999999999999999999999876654332222110 0 00011 112345556677889
Q ss_pred HHHHHHHHHHHHhHH
Q psy5718 506 INEMLTNLLKDLCEI 520 (720)
Q Consensus 506 ~~e~~~~l~~dl~e~ 520 (720)
|.| |...|+....+
T Consensus 137 I~E-M~~vM~~ai~~ 150 (181)
T PF05769_consen 137 ICE-MAAVMRKAIEL 150 (181)
T ss_pred HHH-HHHHHHHHHhc
Confidence 999 55666654443
No 306
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=49.72 E-value=1.6e+02 Score=25.04 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5718 412 KELITTARRDYEQLQGEMTRLTQENESA 439 (720)
Q Consensus 412 eell~~~~~~~e~lq~el~~lq~e~~~~ 439 (720)
...+.++.+.++..+..+..|..|.+.+
T Consensus 11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~ 38 (69)
T PF14197_consen 11 RNRLDSLTRKNSVHEIENKRLRRERDSA 38 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555544444
No 307
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=49.58 E-value=1e+02 Score=27.17 Aligned_cols=50 Identities=24% Similarity=0.257 Sum_probs=32.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 435 ENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTT 484 (720)
Q Consensus 435 e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~ 484 (720)
+.+....+++++...|..|..++|.-..+.+.+..+++-|.+=+..+++.
T Consensus 17 ~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 17 EKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555556667777777777777777777777777776666665555443
No 308
>KOG1760|consensus
Probab=49.36 E-value=2.4e+02 Score=26.89 Aligned_cols=76 Identities=18% Similarity=0.304 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhh--------------hhHH--HHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 423 EQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQ--------------KSQE--VETKNKEFETLTEELTLKQTTLN 486 (720)
Q Consensus 423 e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~--------------~~~e--~e~~~~e~~~l~~el~~~~~~~~ 486 (720)
.++-.+...+..+.+.+|.++..+.-|..++.--.+. -++. -+.+...-+++..++..+.+++.
T Consensus 26 srl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e 105 (131)
T KOG1760|consen 26 SRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELE 105 (131)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677777777777777777777764332222 1111 22333444556666667777777
Q ss_pred HHHHHHHHHHHH
Q psy5718 487 TTSTELQQIKDM 498 (720)
Q Consensus 487 ~l~~el~~l~~~ 498 (720)
+..+++..||.+
T Consensus 106 ~I~~~m~~LK~~ 117 (131)
T KOG1760|consen 106 SISARMDELKKV 117 (131)
T ss_pred HHHHHHHHHHHH
Confidence 777777777754
No 309
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=49.17 E-value=2.5e+02 Score=27.01 Aligned_cols=32 Identities=16% Similarity=0.267 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy5718 486 NTTSTELQQIKDMSNHQKKRINEMLTNLLKDLC 518 (720)
Q Consensus 486 ~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~ 518 (720)
..++.|+..|--+-+.+-.+++. ....||+||
T Consensus 80 ~~~q~EldDLL~ll~Dle~K~~k-yk~rLk~LG 111 (136)
T PF04871_consen 80 KEAQSELDDLLVLLGDLEEKRKK-YKERLKELG 111 (136)
T ss_pred HhhhhhHHHHHHHHHhHHHHHHH-HHHHHHHcC
Confidence 45666777777766666555555 444555554
No 310
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=48.26 E-value=5.1e+02 Score=30.28 Aligned_cols=15 Identities=7% Similarity=-0.064 Sum_probs=7.5
Q ss_pred HHhhhhhhHhhHhhh
Q psy5718 550 YISKMKWRNGETVKE 564 (720)
Q Consensus 550 ~~~~~~~~~~~~~~~ 564 (720)
++..||.-++.|..+
T Consensus 283 H~~svr~HI~~Ls~K 297 (475)
T PRK10361 283 HIASVRNHIRLLGRK 297 (475)
T ss_pred HHHHHHHHHHHHhhC
Confidence 445555555555443
No 311
>KOG4403|consensus
Probab=48.23 E-value=1.7e+02 Score=33.37 Aligned_cols=152 Identities=21% Similarity=0.245 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q psy5718 415 ITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYD--QKSQEVETKNKEFETLTEELTLKQTTLNT----- 487 (720)
Q Consensus 415 l~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d--~~~~e~e~~~~e~~~l~~el~~~~~~~~~----- 487 (720)
+..++..++.+|.++.+.++|++-.--|..+++..+.| |-... ..--+.+..++|+++|+.+|.+...++.+
T Consensus 254 Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~e-a~rl~elreg~e~e~~rkelE~lR~~L~kAEkele~nS~ws 332 (575)
T KOG4403|consen 254 LQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDE-APRLSELREGVENETSRKELEQLRVALEKAEKELEANSSWS 332 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhh-hhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 34556777888888888888877777777666666552 00000 01123455567888888877655544432
Q ss_pred ----HHHHHHHH--HHHHhHHHHHHHH-HHHHHHHHHhH-----HhhhhcCCCcccccCCccccchhhhHHHHHHHhhhh
Q psy5718 488 ----TSTELQQI--KDMSNHQKKRINE-MLTNLLKDLCE-----IGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMK 555 (720)
Q Consensus 488 ----l~~el~~l--~~~~~~~~kr~~e-~~~~l~~dl~e-----~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 555 (720)
|+.=|+-- -|+..+++||-.- +-=.-.|+.+| =|+++|+= -+- ......-++--.--||--.|++-
T Consensus 333 aP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gtl-~va-hgsslDdVD~kIleak~al~evt 410 (575)
T KOG4403|consen 333 APLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGTL-HVA-HGSSLDDVDHKILEAKSALSEVT 410 (575)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchheee-eec-cccchhhHHHHHHHHHHHHHHHH
Confidence 23222222 2446677777432 21122344444 24455542 100 11112234455555898999999
Q ss_pred hhHhhHhhhhcccc
Q psy5718 556 WRNGETVKEDEQVN 569 (720)
Q Consensus 556 ~~~~~~~~~~~~~~ 569 (720)
.++..-.-|-.|+|
T Consensus 411 t~lrErl~RWqQIE 424 (575)
T KOG4403|consen 411 TLLRERLHRWQQIE 424 (575)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998887
No 312
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=47.78 E-value=78 Score=25.95 Aligned_cols=45 Identities=24% Similarity=0.367 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhhhhc
Q psy5718 473 TLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIG 525 (720)
Q Consensus 473 ~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~~~~ 525 (720)
.+..++......+++++.|++++++....-.+.+ |||=++=.+|.
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env--------k~ll~lYE~Vs 48 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENV--------KDLLSLYEVVS 48 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 3445555566666666666666666655555554 44444555553
No 313
>KOG1003|consensus
Probab=47.69 E-value=3.3e+02 Score=28.01 Aligned_cols=35 Identities=17% Similarity=0.123 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q psy5718 281 EQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQAR 315 (720)
Q Consensus 281 ~~~~~~Lk~ei~~Lk~EL~~l~nlrk~~~qdl~~r 315 (720)
+..+..|+..|..|+.++.+|..--+-+.+.|...
T Consensus 3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Ea 37 (205)
T KOG1003|consen 3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEA 37 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788899999999999966555555555543
No 314
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=47.28 E-value=77 Score=24.79 Aligned_cols=19 Identities=37% Similarity=0.548 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHhhHHH
Q psy5718 424 QLQGEMTRLTQENESAKEE 442 (720)
Q Consensus 424 ~lq~el~~lq~e~~~~kee 442 (720)
.|-.+...|+.|+++.+.+
T Consensus 16 ~Lk~~~~~L~~E~~~L~ae 34 (45)
T PF02183_consen 16 SLKAEYDSLKKENEKLRAE 34 (45)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 315
>KOG0972|consensus
Probab=46.95 E-value=4.2e+02 Score=28.95 Aligned_cols=112 Identities=14% Similarity=0.284 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 412 KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTE 491 (720)
Q Consensus 412 eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~e 491 (720)
++-...+...+.++..++++--+..++-+.. +...|+.|--.|..-+-++.+.+-...+++..+.+-.+.++..-.|
T Consensus 240 e~~~~~~~~~Ldklh~eit~~LEkI~SREK~---lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e 316 (384)
T KOG0972|consen 240 EQKVGNVGPYLDKLHKEITKALEKIASREKS---LNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDE 316 (384)
T ss_pred HHhhcchhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3344444445555555555433333322221 2223333334444445555555555556666666666666666666
Q ss_pred HHHHHHHHhHHH---------HHHHHHHHHHHHHHhHHhhhhcC
Q psy5718 492 LQQIKDMSNHQK---------KRINEMLTNLLKDLCEIGLVIGS 526 (720)
Q Consensus 492 l~~l~~~~~~~~---------kr~~e~~~~l~~dl~e~~~~~~~ 526 (720)
++++|+....|- -+|..-++.|=.|+.++-.-||-
T Consensus 317 ~E~~KqemEe~G~~msDGaplvkIkqavsKLk~et~~mnv~igv 360 (384)
T KOG0972|consen 317 IEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEETQTMNVQIGV 360 (384)
T ss_pred HHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhhhhheeh
Confidence 666665433221 24666677777777777766654
No 316
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=46.68 E-value=3.3e+02 Score=27.74 Aligned_cols=7 Identities=43% Similarity=0.795 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy5718 440 KEEVKEV 446 (720)
Q Consensus 440 keevke~ 446 (720)
.+++.++
T Consensus 130 e~~i~~L 136 (190)
T PF05266_consen 130 ESEIKEL 136 (190)
T ss_pred HHHHHHH
Confidence 3333333
No 317
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=46.45 E-value=1.1e+02 Score=36.83 Aligned_cols=74 Identities=19% Similarity=0.246 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 422 YEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQK-SQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIK 496 (720)
Q Consensus 422 ~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~-~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~ 496 (720)
+.+++.++..+..+.+.+.+++.++...|.. ...|.+. ...+.++.++++.+..++..+...+..|..+++++-
T Consensus 558 ~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~ 632 (638)
T PRK10636 558 TQPLRKEIARLEKEMEKLNAQLAQAEEKLGD-SELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQML 632 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556666666777777777666666543 1234332 236778888888888888888888888887776654
No 318
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=46.41 E-value=4.1e+02 Score=28.72 Aligned_cols=67 Identities=21% Similarity=0.305 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 423 EQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIK 496 (720)
Q Consensus 423 e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~ 496 (720)
+.--.+..-|+.||...-+.-..+. ..-+--+.++.-|.-.+.-|...|+.-...+..|+.|+..++
T Consensus 56 e~ek~e~s~LkREnq~l~e~c~~le-------k~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~K 122 (307)
T PF10481_consen 56 EEEKNEYSALKRENQSLMESCENLE-------KTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCK 122 (307)
T ss_pred HHHhhhhhhhhhhhhhHHHHHHHHH-------HHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555544433332222 222222333334444444444444444444444444444443
No 319
>PRK07857 hypothetical protein; Provisional
Probab=46.11 E-value=74 Score=29.50 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHhHHhhhhc
Q psy5718 462 QEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSN---HQKKRINEMLTNLLKDLCEIGLVIG 525 (720)
Q Consensus 462 ~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~---~~~kr~~e~~~~l~~dl~e~~~~~~ 525 (720)
..+++.+.+|..+-.++..+-++-..+-.++..+|..++ .+..|-.+++..+..-||.-|..++
T Consensus 28 ~~L~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K~~~g~pI~dp~RE~eVl~rl~~~lg~~g~~~a 94 (106)
T PRK07857 28 AEIDELREEIDRLDAEILALVKRRTEVSQAIGKARMASGGTRLVHSREMKVIERYREELGPEGKDLA 94 (106)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccChHHHHHHHHHHHHHhCCccHHHH
Confidence 457889999999999999999999999999999999765 6889999999999988887776654
No 320
>COG5283 Phage-related tail protein [Function unknown]
Probab=45.95 E-value=8e+02 Score=31.87 Aligned_cols=68 Identities=24% Similarity=0.300 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHH
Q psy5718 396 EMTRLTQENESAKEEV---KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQE 463 (720)
Q Consensus 396 Ei~~~~q~~ekLkeq~---eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e 463 (720)
.|.-..+....++.|+ ..-+......|+-|-.-|.+...=.+.++.|++|+-.+..+..+.|++...+
T Consensus 30 si~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q 100 (1213)
T COG5283 30 SIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQ 100 (1213)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444 4445555666677777777777777777777777777777766666665555
No 321
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=45.83 E-value=6.6e+02 Score=30.92 Aligned_cols=105 Identities=16% Similarity=0.200 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHh------hhhcC------CCccc
Q psy5718 464 VETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIG------LVIGS------EGDMK 531 (720)
Q Consensus 464 ~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~------~~~~~------~~~~~ 531 (720)
+.-+.+++.++.-|=..+.+.+...+..|..-+..-.+|..||..+... +.-|...- +.... +.+..
T Consensus 267 iqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~-l~aL~~l~~~ke~~~~~d~~~~~~s~~d~~ 345 (717)
T PF09730_consen 267 IQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQ-LDALRKLQEDKEQQSAEDSEKERDSHEDGD 345 (717)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhccchhhhhhhhcccccccccccc
Confidence 3334444444444445566666666777777777777888888776655 33332210 00000 00000
Q ss_pred -ccCCccc--cchhhhHHHHHHHhhhhhhHhhHhhhhcccc
Q psy5718 532 -VTSDGAG--KLEEEFTVARLYISKMKWRNGETVKEDEQVN 569 (720)
Q Consensus 532 -~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (720)
...+++| .++-.|.||---+.++|.|+|.|=.....++
T Consensus 346 ~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~ 386 (717)
T PF09730_consen 346 YYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELE 386 (717)
T ss_pred hhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0123444 3578899999999999999998865554433
No 322
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=45.59 E-value=5.9e+02 Score=30.28 Aligned_cols=84 Identities=24% Similarity=0.409 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHhhhhhhhHHHHHHHHHHHHH
Q psy5718 396 EMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQA-LEELAVNYDQKSQEVETKNKEFETL 474 (720)
Q Consensus 396 Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qa-leel~~n~d~~~~e~e~~~~e~~~l 474 (720)
-|.+....+++++.++...+.....+....-.....|..+..+...++.++++. .+ +.-...+.+-..+.+.|
T Consensus 15 ~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~------~~i~~~l~~a~~e~~~L 88 (593)
T PF06248_consen 15 SISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIE------NEIQPQLRDAAEELQEL 88 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc------chhHHHHHHHHHHHHHH
Confidence 455555666666666665666555565555666666777777777777666554 21 22334455556666666
Q ss_pred HHHHHHHHHHH
Q psy5718 475 TEELTLKQTTL 485 (720)
Q Consensus 475 ~~el~~~~~~~ 485 (720)
..|+.....-+
T Consensus 89 ~~eL~~~~~~l 99 (593)
T PF06248_consen 89 KRELEENEQLL 99 (593)
T ss_pred HHHHHHHHHHH
Confidence 66665444333
No 323
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=45.44 E-value=1.7e+02 Score=29.06 Aligned_cols=46 Identities=15% Similarity=0.134 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy5718 463 EVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINE 508 (720)
Q Consensus 463 e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e 508 (720)
.......|++.|..++.++...+..|+.|++.|..-...-..-...
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~ 143 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQT 143 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666665554444333333
No 324
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=45.22 E-value=3.2e+02 Score=32.48 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5718 484 TLNTTSTELQQIKDMSNHQKKRINEM 509 (720)
Q Consensus 484 ~~~~l~~el~~l~~~~~~~~kr~~e~ 509 (720)
....+...+..|+.+...--+|+.+.
T Consensus 245 ~~~~~~~~~~~lk~ap~~D~~~L~~~ 270 (555)
T TIGR03545 245 DKKQLKADLAELKKAPQNDLKRLENK 270 (555)
T ss_pred hHHHHHHHHHHHHhccHhHHHHHHHH
Confidence 34445555666666666666666543
No 325
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=45.01 E-value=1.3e+02 Score=25.88 Aligned_cols=14 Identities=50% Similarity=0.821 Sum_probs=5.6
Q ss_pred HHHHHHHHhhhhhh
Q psy5718 447 LQALEELAVNYDQK 460 (720)
Q Consensus 447 ~qaleel~~n~d~~ 460 (720)
+.||+.|-..|.+.
T Consensus 9 l~ale~Lq~~y~~q 22 (70)
T PF04899_consen 9 LSALEELQQSYEKQ 22 (70)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 326
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=45.00 E-value=47 Score=34.12 Aligned_cols=52 Identities=21% Similarity=0.360 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5718 463 EVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLK 515 (720)
Q Consensus 463 e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~ 515 (720)
.+.+--.||+.|..++..+...+..|..|+..|+++..| -+.+++|+..|+.
T Consensus 119 AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~-~~~la~~ie~l~~ 170 (200)
T PF07412_consen 119 ALEEALEENEKLHKEIEQKDEEIAKLKEENEELKELAEH-VQYLAEVIERLTG 170 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhc
Confidence 355556678888888888888888999999999998555 4477777777654
No 327
>KOG0962|consensus
Probab=44.88 E-value=8.6e+02 Score=31.95 Aligned_cols=29 Identities=28% Similarity=0.494 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy5718 428 EMTRLTQENESAKEEVKEVLQALEELAVN 456 (720)
Q Consensus 428 el~~lq~e~~~~keevke~~qaleel~~n 456 (720)
++..++++......+++++...+--++.+
T Consensus 886 ~~~~l~e~~~~~~s~~~e~~~~~~~~~~~ 914 (1294)
T KOG0962|consen 886 DIEELSEEITRLDSKVKELLERIQPLKVE 914 (1294)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhhcchhhh
Confidence 33333333333333333333333333333
No 328
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=44.84 E-value=75 Score=24.83 Aligned_cols=28 Identities=32% Similarity=0.545 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy5718 419 RRDYEQLQGEMTRLTQENESAKEEVKEV 446 (720)
Q Consensus 419 ~~~~e~lq~el~~lq~e~~~~keevke~ 446 (720)
++||+-|...-..|..++++++.|...+
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L 31 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKL 31 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555444444444443
No 329
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=44.79 E-value=80 Score=26.55 Aligned_cols=24 Identities=42% Similarity=0.642 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHH
Q psy5718 423 EQLQGEMTRLTQENESAKEEVKEV 446 (720)
Q Consensus 423 e~lq~el~~lq~e~~~~keevke~ 446 (720)
..++.++..++.+++.++.+++.+
T Consensus 27 ~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 27 AELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444443
No 330
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=44.46 E-value=8.5 Score=46.02 Aligned_cols=87 Identities=22% Similarity=0.334 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHhHH
Q psy5718 439 AKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLK----------------QTTLNTTSTELQQIKDMSNHQ 502 (720)
Q Consensus 439 ~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~----------------~~~~~~l~~el~~l~~~~~~~ 502 (720)
.++....+...+++|...+.+.-+++.++..+++.|..+|... ...+..+..+|+.|++.....
T Consensus 82 L~~~~~~L~~~le~l~~~~~eR~~~~~~L~~~~~~l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R 161 (619)
T PF03999_consen 82 LKEQLPKLRPQLEELRKEKEERMQEFKELQEQLEQLCEELGELPLCLNPFDIDESDLPSLEELEELRQHLQRLQEEKERR 161 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666677777777777777777777777777766421 256777777788887777776
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhc
Q psy5718 503 KKRINEMLTNLLKDLCEIGLVIG 525 (720)
Q Consensus 503 ~kr~~e~~~~l~~dl~e~~~~~~ 525 (720)
...+.++...+..-+.++|.-..
T Consensus 162 ~~~v~~l~~~I~~l~~~L~~~~~ 184 (619)
T PF03999_consen 162 LEEVRELREEIISLMEELGIDPE 184 (619)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHhCCCcc
Confidence 77777777666666666666553
No 331
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=43.98 E-value=5.2e+02 Score=29.18 Aligned_cols=43 Identities=16% Similarity=0.275 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5718 438 SAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTL 480 (720)
Q Consensus 438 ~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~ 480 (720)
..+.++.++...+.++...|..+.-.+.....+++.+...+..
T Consensus 258 ~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~ 300 (444)
T TIGR03017 258 NLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNA 300 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777778888888888888887777777643
No 332
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=43.85 E-value=5.7e+02 Score=29.63 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5718 440 KEEVKEVLQALEELAVN-YDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQ 502 (720)
Q Consensus 440 keevke~~qaleel~~n-~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~ 502 (720)
..=++++..+|++...+ +.+...++- .+.+++......+.++..+.-.|+..-.+-
T Consensus 134 l~~~~~~~e~f~e~l~~~~~~s~~~~~-------~~~~~i~~~lg~~~~la~e~~~Lt~~Lk~~ 190 (448)
T COG1322 134 LKPLREVLEKFREQLEQRIHESAEERS-------TLLEEIDRLLGEIQQLAQEAGNLTAALKGN 190 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33345666666664443 444444443 344444455556666666666676665553
No 333
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=43.58 E-value=3.5e+02 Score=27.00 Aligned_cols=129 Identities=19% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHhhhhHHHHHHHHHHHhhhhcccccchhHHHhhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q psy5718 340 FLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQG----EMTRLTQENESAKEEVKELI 415 (720)
Q Consensus 340 ~le~~Le~L~~~~~qLv~dn~~l~~elp~~~~~~~~~~Er~k~~ee~~~l~~ql~~----Ei~~~~q~~ekLkeq~eell 415 (720)
|-..+-+.+.......+.++-..... .+..+..-.............+...++. +++.+....++|+.+++.+.
T Consensus 16 ft~~QAe~i~~~l~~~l~~~~~~~~~--~~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~ 93 (177)
T PF07798_consen 16 FTEEQAEAIMKALREVLNDSLEKVAQ--DLVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLR 93 (177)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH--------HHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5718 416 TTARRDYEQLQGEMT--------RLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTL 480 (720)
Q Consensus 416 ~~~~~~~e~lq~el~--------~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~ 480 (720)
...+.+..+++.++. ++.++....+..+.++...+. .++.+.+.+++.+.-++.+
T Consensus 94 ~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~----------~ei~~lr~~iE~~K~~~lr 156 (177)
T PF07798_consen 94 QELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKID----------TEIANLRTEIESLKWDTLR 156 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
No 334
>KOG2010|consensus
Probab=43.52 E-value=73 Score=34.92 Aligned_cols=50 Identities=22% Similarity=0.293 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 385 TARRDYEQLQGEMTRLTQENESAKEEV---KELITTARRDYEQLQGEMTRLTQ 434 (720)
Q Consensus 385 e~~~l~~ql~~Ei~~~~q~~ekLkeq~---eell~~~~~~~e~lq~el~~lq~ 434 (720)
.+|-.|.|||.|-+..-+.++-||+.+ ++-|+.++|.|+.+-.++-+++-
T Consensus 130 kaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh 182 (405)
T KOG2010|consen 130 KAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKH 182 (405)
T ss_pred HHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888888888888888888 55566677777766666665554
No 335
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=43.21 E-value=3.8e+02 Score=27.37 Aligned_cols=109 Identities=18% Similarity=0.226 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhh
Q psy5718 383 ITTARRDYEQLQGEMTRLTQENESAKEEV---KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQ 459 (720)
Q Consensus 383 ~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~---eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~ 459 (720)
+.......++|..++.+-..-+......+ +.-.....+-....+.++..|+.=...++..+....+... .
T Consensus 62 L~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~-------~ 134 (188)
T PF05335_consen 62 LAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAE-------G 134 (188)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 33444455555555554444444444444 3334444444445555555555555555555554444433 3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 460 KSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDM 498 (720)
Q Consensus 460 ~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~ 498 (720)
-.+++.+++..++.-+..+..+...|.....+|+..|..
T Consensus 135 AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~a 173 (188)
T PF05335_consen 135 AQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKKA 173 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666666666666666666666553
No 336
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=43.01 E-value=3.7e+02 Score=29.53 Aligned_cols=65 Identities=25% Similarity=0.259 Sum_probs=35.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 431 RLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETK---NKEFETLTEELTLKQTTLNTTSTELQQI 495 (720)
Q Consensus 431 ~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~---~~e~~~l~~el~~~~~~~~~l~~el~~l 495 (720)
-++-|.+.+++.+.|+..+||+-.+--.+.+..++.. -+.+.+|+.-+.....++.+++..++++
T Consensus 226 i~e~e~e~Lke~lqel~~~~e~~~~~~ee~~~~l~~~~~fL~~NkDL~~~l~~e~qkL~~l~~k~~~~ 293 (307)
T PF15112_consen 226 ILEIEMELLKEKLQELYLQAEEQEVLPEEDSKRLEVLKEFLRNNKDLRSNLQEELQKLDSLQTKHQKL 293 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhcch
Confidence 3466778888888888777776443333333333332 3444555555444445555555444443
No 337
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=42.99 E-value=2.3e+02 Score=33.10 Aligned_cols=22 Identities=9% Similarity=0.016 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy5718 472 ETLTEELTLKQTTLNTTSTELQ 493 (720)
Q Consensus 472 ~~l~~el~~~~~~~~~l~~el~ 493 (720)
+.+.+++.+......++..++.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~ 155 (525)
T TIGR02231 134 DFNGSEIERLLTEDREAERRIR 155 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 338
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=42.76 E-value=4.3e+02 Score=27.81 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=15.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhHH
Q psy5718 493 QQIKDMSNHQKKRINEMLTNLLKDLCEI 520 (720)
Q Consensus 493 ~~l~~~~~~~~kr~~e~~~~l~~dl~e~ 520 (720)
-.|.....+|.+.....+-.||..|-++
T Consensus 186 l~l~~aN~~q~~yY~~~lP~ll~~lQ~l 213 (237)
T cd07657 186 LALLEAQEHEEDYRTLLLPGLLNSLQSL 213 (237)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4455556666666655555555555443
No 339
>KOG3809|consensus
Probab=42.60 E-value=4.5e+02 Score=30.24 Aligned_cols=63 Identities=19% Similarity=0.256 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy5718 387 RRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQA 449 (720)
Q Consensus 387 ~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qa 449 (720)
..++..++.|+..-..+.-...+.+....+.+--..+-|+.+|..||.+....++++-++...
T Consensus 506 ~eD~daMq~EL~mWrse~rq~~~elq~eq~~t~~a~epL~~~la~lq~~I~d~~e~i~~~r~~ 568 (583)
T KOG3809|consen 506 NEDIDAMQKELEMWRSEQRQNEQELQNEQAATFGASEPLYNILANLQKEINDTKEEISKARGR 568 (583)
T ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444333333333334444444555566788888888888888888777765544
No 340
>PRK11519 tyrosine kinase; Provisional
Probab=42.08 E-value=7.3e+02 Score=30.35 Aligned_cols=81 Identities=14% Similarity=0.188 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5718 439 AKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQT---TLNTTSTELQQIKDMSNHQKKRINEMLTNLLK 515 (720)
Q Consensus 439 ~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~---~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~ 515 (720)
.+.++.++...+.+|...|-.+.-.+..+..+...|..+++.... .+...+.++.+|+.-.+..+ ++...||.
T Consensus 316 l~~ql~~l~~~~~~l~~~y~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~----~lY~~lL~ 391 (719)
T PRK11519 316 IDAQLNELTFKEAEISKLYTKEHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQ----QVYMQLLN 391 (719)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 334444555555666667777766666666666666665554443 34445555555554433333 44555555
Q ss_pred HHhHHhhh
Q psy5718 516 DLCEIGLV 523 (720)
Q Consensus 516 dl~e~~~~ 523 (720)
-+.|....
T Consensus 392 r~~e~~i~ 399 (719)
T PRK11519 392 KQQELKIT 399 (719)
T ss_pred HHHHHhHH
Confidence 55555443
No 341
>KOG3915|consensus
Probab=41.92 E-value=31 Score=39.31 Aligned_cols=56 Identities=27% Similarity=0.284 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHhhhcccccccchhHHHHHHhhhccch
Q psy5718 612 KLEEERERLYQQLD---EKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQARKDLKGLE 675 (720)
Q Consensus 612 ~~~~~~~~~~~q~~---~lrdei~~k~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (720)
+..++|+.|+.|+. .||--. -.+||.| ..-|-+.-+-|.+-..|||||.|-+||--
T Consensus 539 rerelreslekql~~ErklR~~~------qkr~kkE--kk~k~k~qe~L~~~sk~reqaeqs~~~~s 597 (641)
T KOG3915|consen 539 RERELRESLEKQLAMERKLRAIV------QKRLKKE--KKAKRKLQEALEFESKRREQAEQSLKQAS 597 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH--HHHHHHHHHHhhhccccchhhhhcccccc
Confidence 34458888888875 222111 1344444 33344444456677789999999999853
No 342
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=41.82 E-value=4.8e+02 Score=28.17 Aligned_cols=46 Identities=30% Similarity=0.424 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy5718 463 EVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINE 508 (720)
Q Consensus 463 e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e 508 (720)
+-+...+.++....||......+...+.++..+++....-|.|+.+
T Consensus 194 eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~ 239 (269)
T PF05278_consen 194 EKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGE 239 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556666666666666666666665555444444433
No 343
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=41.81 E-value=4.3e+02 Score=27.54 Aligned_cols=39 Identities=31% Similarity=0.303 Sum_probs=30.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 373 LRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEV 411 (720)
Q Consensus 373 ~~~~~Er~k~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~ 411 (720)
+-...|--.++..+...|.++-+++.++.+.++.|++++
T Consensus 22 Gy~~eEVdeFLD~V~~dye~~l~e~~~l~~~i~~L~~~l 60 (212)
T COG3599 22 GYDEEEVDEFLDDVIDDYEQLLDENEDLEDEIDELKEEL 60 (212)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667888888888888888888888888888777
No 344
>KOG2264|consensus
Probab=41.43 E-value=1.5e+02 Score=34.87 Aligned_cols=35 Identities=29% Similarity=0.324 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q psy5718 441 EEVKEVLQALEELAVNYDQKSQEVETKNKEFETLT 475 (720)
Q Consensus 441 eevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~ 475 (720)
.|+.+..+..|+++...-++.+++..++-++++-.
T Consensus 107 seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq 141 (907)
T KOG2264|consen 107 SEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQ 141 (907)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHH
Confidence 34444455555555554555555444444444333
No 345
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=41.41 E-value=6.5e+02 Score=29.55 Aligned_cols=7 Identities=0% Similarity=0.273 Sum_probs=3.0
Q ss_pred hhhhhhh
Q psy5718 235 MKSEVKN 241 (720)
Q Consensus 235 LTrLLqd 241 (720)
|-|||.-
T Consensus 84 lrrIiag 90 (489)
T PF05262_consen 84 LRRIIAG 90 (489)
T ss_pred HHHHHHH
Confidence 3344444
No 346
>KOG2891|consensus
Probab=41.33 E-value=4.9e+02 Score=28.14 Aligned_cols=34 Identities=29% Similarity=0.422 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy5718 419 RRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 452 (720)
Q Consensus 419 ~~~~e~lq~el~~lq~e~~~~keevke~~qalee 452 (720)
+.+.++|+.+.+++++=.+..+++-..+++||-+
T Consensus 396 qkeeeklk~e~qkikeleek~~eeedal~~all~ 429 (445)
T KOG2891|consen 396 QKEEEKLKAEEQKIKELEEKIKEEEDALLLALLN 429 (445)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455677777777777666666666667766654
No 347
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=41.15 E-value=6.7e+02 Score=29.60 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 469 KEFETLTEELTLKQTTLNTTSTELQQIKD 497 (720)
Q Consensus 469 ~e~~~l~~el~~~~~~~~~l~~el~~l~~ 497 (720)
.++..|+|-|+.++.++..-..|++.||.
T Consensus 487 ~QLs~MSEHLasmNeqL~~Q~eeI~~LK~ 515 (518)
T PF10212_consen 487 EQLSMMSEHLASMNEQLAKQREEIQTLKL 515 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46677888888888888888888888883
No 348
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=40.81 E-value=5.2e+02 Score=28.31 Aligned_cols=45 Identities=20% Similarity=0.387 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHH
Q psy5718 419 RRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQE 463 (720)
Q Consensus 419 ~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e 463 (720)
...+..++..+..-...+....++-.++-..|..+...|+..-+-
T Consensus 113 q~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~ 157 (309)
T PF09728_consen 113 QATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEH 157 (309)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555556666666667777777777777755444
No 349
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=40.39 E-value=3.8e+02 Score=26.54 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=11.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Q psy5718 457 YDQKSQEVETKNKEFETLTEELT 479 (720)
Q Consensus 457 ~d~~~~e~e~~~~e~~~l~~el~ 479 (720)
|+.....++.+.+.+..+...+.
T Consensus 147 y~~~~~~~~~l~~~i~~l~rk~~ 169 (177)
T PF13870_consen 147 YDKTKEEVEELRKEIKELERKVE 169 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555544444444433
No 350
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=40.16 E-value=3.4e+02 Score=25.96 Aligned_cols=40 Identities=10% Similarity=0.324 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy5718 412 KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE 451 (720)
Q Consensus 412 eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qale 451 (720)
.|+...++.+...++..+.++..+.++...-|..+...+.
T Consensus 81 ~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 81 KEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444333333
No 351
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.11 E-value=2.1e+02 Score=30.47 Aligned_cols=75 Identities=21% Similarity=0.295 Sum_probs=48.8
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HhHHhhhhcCC
Q psy5718 451 EELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKD-LCEIGLVIGSE 527 (720)
Q Consensus 451 eel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~d-l~e~~~~~~~~ 527 (720)
-.+++.|-+.+.+....++.. .|..++.+.+++...|.+|..++....+.-+ |...-..+.|-| |.-....+|..
T Consensus 33 ~~~a~~~q~~k~~~~~~~r~~-~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~-~~~~t~~~~ie~~l~~l~~~aG~v 108 (247)
T COG3879 33 VMLAAVFQTSKGESVRRARDL-DLVKELRSLQKKVNTLAAEVEDLENKLDSVR-RSVLTDDAALEDRLEKLRMLAGSV 108 (247)
T ss_pred HHHHHHHhhccCcchhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHhHHHHHHHHHHHHHHHhccC
Confidence 345566666666655555555 7777777777777777777777777766666 555555666666 54455555554
No 352
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=39.99 E-value=4.8e+02 Score=27.67 Aligned_cols=81 Identities=15% Similarity=0.273 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy5718 441 EEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLK----QTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKD 516 (720)
Q Consensus 441 eevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~----~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~d 516 (720)
..+.++...+..+...+.+.+..+.+.-.....+...+... ...+..+..=+.++.....+.+..+.. ++.+
T Consensus 188 ~~i~~ll~~l~~l~~~l~~~~~~l~~~v~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~~l~~----~l~~ 263 (291)
T TIGR00996 188 GDIGALIDNLNRVLDVLADRSDQLDRLLDNLATLTAQLADRDDALDDALAALSGASAQVRDLLAENRPNLPQ----ALAN 263 (291)
T ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH----HHHH
Confidence 33344444444444444444444444444444433333322 223333333334555555555555544 4444
Q ss_pred HhHHhhhhc
Q psy5718 517 LCEIGLVIG 525 (720)
Q Consensus 517 l~e~~~~~~ 525 (720)
|..+...+.
T Consensus 264 l~~~~~~l~ 272 (291)
T TIGR00996 264 LAPVLTLLV 272 (291)
T ss_pred HHHHHHHHH
Confidence 444544443
No 353
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=39.78 E-value=2.6e+02 Score=24.46 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q psy5718 441 EEVKEVLQALEELAVNYDQKSQEVETKN 468 (720)
Q Consensus 441 eevke~~qaleel~~n~d~~~~e~e~~~ 468 (720)
.|+.++...-.++....+.+.+.+...-
T Consensus 47 ~e~~~ll~~~n~l~~dv~~k~~~v~~~~ 74 (90)
T PF06103_consen 47 KEINDLLHNTNELLEDVNEKLEKVDPVF 74 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3333333333333333333333333333
No 354
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=39.48 E-value=2.7e+02 Score=27.41 Aligned_cols=35 Identities=20% Similarity=0.400 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy5718 421 DYEQLQGEMTRLTQENESAKEEVKEVLQALEELAV 455 (720)
Q Consensus 421 ~~e~lq~el~~lq~e~~~~keevke~~qaleel~~ 455 (720)
+++....+...+.++...++.++.+....|+.|..
T Consensus 14 ~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 14 DIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444555555555554444444443
No 355
>KOG0979|consensus
Probab=39.38 E-value=9.2e+02 Score=30.75 Aligned_cols=137 Identities=18% Similarity=0.230 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhh
Q psy5718 391 EQLQGEMTRLTQENESAKEEVKELITT------ARR----DYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQK 460 (720)
Q Consensus 391 ~ql~~Ei~~~~q~~ekLkeq~eell~~------~~~----~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~ 460 (720)
+..+.+-+++.+..++++.+++.+... ... ...+.-.++...+.+...+...+.++.-.|.+.......+
T Consensus 244 ~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~ 323 (1072)
T KOG0979|consen 244 KKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEK 323 (1072)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556777777777777777333321 122 2234555666677777777777777777777666666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHhHHhhhhcCC
Q psy5718 461 SQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNH------QKKRINEMLTNLLKDLCEIGLVIGSE 527 (720)
Q Consensus 461 ~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~------~~kr~~e~~~~l~~dl~e~~~~~~~~ 527 (720)
...++.+.+.-+.....+.+....+.+++.+|++.-...+. -++-..+.-.+-+.|..+.+++....
T Consensus 324 ~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~~~~~~~~~~~~~~~id~~~~~ 396 (1072)
T KOG0979|consen 324 KNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETEDPENPVEEDQEIMKEVLQKKSSKLRDSRQEIDAEQLK 396 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccccchhHHHHHHHHHHHHhhhhhhhhhhhhHHHHH
Confidence 66677777777777777777777788888888765443322 23333444455667777777776554
No 356
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=39.05 E-value=4.4e+02 Score=26.91 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHH
Q psy5718 463 EVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEI 520 (720)
Q Consensus 463 e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~ 520 (720)
++..++.-+...+..+..........+.||..=..+..-=|+|+..+..-|.....|+
T Consensus 110 q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~ 167 (188)
T PF05335_consen 110 QLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADY 167 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555666666666666666776666666667777777666665555554
No 357
>PRK14127 cell division protein GpsB; Provisional
Probab=38.71 E-value=1.2e+02 Score=28.35 Aligned_cols=36 Identities=33% Similarity=0.551 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy5718 413 ELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQ 448 (720)
Q Consensus 413 ell~~~~~~~e~lq~el~~lq~e~~~~keevke~~q 448 (720)
+-|...-.+|+.+..++.+|++++..+++.+.+...
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556666666666666666666666555443
No 358
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=38.50 E-value=2.8e+02 Score=32.23 Aligned_cols=18 Identities=33% Similarity=0.339 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy5718 422 YEQLQGEMTRLTQENESA 439 (720)
Q Consensus 422 ~e~lq~el~~lq~e~~~~ 439 (720)
++.+..+...|+.||+.+
T Consensus 75 ~~~l~~~N~~l~~eN~~L 92 (472)
T TIGR03752 75 LAKLISENEALKAENERL 92 (472)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 359
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=38.46 E-value=4e+02 Score=26.27 Aligned_cols=71 Identities=24% Similarity=0.320 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5718 444 KEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLL 514 (720)
Q Consensus 444 ke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~ 514 (720)
+.+-+.-++|..+.|---++|+..++.|+.+.-+|.-+...-.--+.|+..-.+.-+.--++=+.+.+.|+
T Consensus 66 krLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~ 136 (159)
T PF04949_consen 66 KRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLM 136 (159)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555666667777777777777777777665555555555555555554444444444444443
No 360
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=38.28 E-value=3.1e+02 Score=24.86 Aligned_cols=29 Identities=10% Similarity=0.196 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 467 KNKEFETLTEELTLKQTTLNTTSTELQQI 495 (720)
Q Consensus 467 ~~~e~~~l~~el~~~~~~~~~l~~el~~l 495 (720)
+...++.+..++......+..++.++..+
T Consensus 68 Le~~~e~le~~i~~l~~~~~~l~~~~~el 96 (105)
T cd00632 68 LKERLETIELRIKRLERQEEDLQEKLKEL 96 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444443333
No 361
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=37.98 E-value=67 Score=36.03 Aligned_cols=80 Identities=20% Similarity=0.355 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy5718 441 EEVKEVLQALEELAVNYDQKSQEVETKNKEF----ETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKD 516 (720)
Q Consensus 441 eevke~~qaleel~~n~d~~~~e~e~~~~e~----~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~d 516 (720)
..++++...++.+..+..+...+++...... +.|...+......+.+++..+..+........|+|..+... +.|
T Consensus 105 ~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~k-l~D 183 (370)
T PF02994_consen 105 KRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDK-LDD 183 (370)
T ss_dssp -------------H-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHH
Confidence 3334444445555554444444444444333 34556666677777788888888888777777888775554 566
Q ss_pred HhHHh
Q psy5718 517 LCEIG 521 (720)
Q Consensus 517 l~e~~ 521 (720)
|-.-+
T Consensus 184 lEnrs 188 (370)
T PF02994_consen 184 LENRS 188 (370)
T ss_dssp HHHHH
T ss_pred HHhhc
Confidence 65544
No 362
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=37.83 E-value=80 Score=28.19 Aligned_cols=31 Identities=32% Similarity=0.339 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q psy5718 381 KLITTARRDYEQLQG--EMTRLTQENESAKEEV 411 (720)
Q Consensus 381 k~~ee~~~l~~ql~~--Ei~~~~q~~ekLkeq~ 411 (720)
...+++.-+..+++. ++.++--++-+|.+++
T Consensus 28 ~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~ 60 (86)
T PF12711_consen 28 ALKEEIQLLREQVEHNPEVTRFAMENIRLREEL 60 (86)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 344455555555555 6666666666666666
No 363
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=37.79 E-value=1.5e+02 Score=24.90 Aligned_cols=50 Identities=14% Similarity=0.092 Sum_probs=33.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy5718 457 YDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRI 506 (720)
Q Consensus 457 ~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~ 506 (720)
+...-..+..++.++..+..++.+....+..|..+++.|+.......+.+
T Consensus 12 ~~~~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~A 61 (80)
T PF04977_consen 12 GISGYSRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVA 61 (80)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 33344456677777888888888888888888888888854433333333
No 364
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=37.46 E-value=9e+02 Score=30.07 Aligned_cols=190 Identities=19% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccccccccccCCCCchHHHhHHH-HHhhhhHHHHHHHHHHHhhhhccccc
Q psy5718 287 LKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKIS-FLENNLDQLTKVHKQLVRDNADLRCE 365 (720)
Q Consensus 287 Lk~ei~~Lk~EL~~l~nlrk~~~qdl~~r~g~~~~~~e~~~~~~~~~~~qki~-~le~~Le~L~~~~~qLv~dn~~l~~e 365 (720)
+...+..|..-|..--........+...+.-..+. ......+|+. .|+..|..+.+....+..+|+.+
T Consensus 43 ~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~--------~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l--- 111 (769)
T PF05911_consen 43 LEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVA--------KKSKEWEKIKSELEAKLAELSKRLAESAAENSAL--- 111 (769)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHH--------HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---
Q ss_pred chhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy5718 366 LPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKE 445 (720)
Q Consensus 366 lp~~~~~~~~~~Er~k~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke 445 (720)
..+-.+|-+...++.....+.+.++.-+.. .+.++.++..-|++++.-++.|++.-.+|..-
T Consensus 112 -------~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~-----------~l~~~eken~~Lkye~~~~~keleir~~E~~~ 173 (769)
T PF05911_consen 112 -------SKALQEKEKLIAELSEEKSQAEAEIEDLMA-----------RLESTEKENSSLKYELHVLSKELEIRNEEREY 173 (769)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHH
Q psy5718 446 VLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQ---TTLNTTSTELQQIKDMSNHQKKR 505 (720)
Q Consensus 446 ~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~---~~~~~l~~el~~l~~~~~~~~kr 505 (720)
-.++.+.--..+-+..+.+..+-.|.+.|+.-+-.+. +.+.....|.+.+..-...-|+|
T Consensus 174 ~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~r 236 (769)
T PF05911_consen 174 SRRAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESLGRDSGENRRR 236 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhccccccccCC
No 365
>PRK12705 hypothetical protein; Provisional
Probab=37.45 E-value=7.5e+02 Score=29.17 Aligned_cols=17 Identities=6% Similarity=0.413 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5718 501 HQKKRINEMLTNLLKDL 517 (720)
Q Consensus 501 ~~~kr~~e~~~~l~~dl 517 (720)
+-.++..+++..-+.-.
T Consensus 173 ~a~~~A~~ii~~aiqr~ 189 (508)
T PRK12705 173 EAERKAQNILAQAMQRI 189 (508)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34445556666555443
No 366
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=37.30 E-value=2.1e+02 Score=25.78 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 467 KNKEFETLTEELTLKQTTLNTTSTELQ 493 (720)
Q Consensus 467 ~~~e~~~l~~el~~~~~~~~~l~~el~ 493 (720)
+..+...+..++..+...+..++.++.
T Consensus 72 l~~e~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 72 LKAEVKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 367
>KOG2391|consensus
Probab=36.35 E-value=1.9e+02 Score=32.11 Aligned_cols=60 Identities=28% Similarity=0.301 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy5718 393 LQGEMTRLTQENESAKEEVKE---LITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 452 (720)
Q Consensus 393 l~~Ei~~~~q~~ekLkeq~ee---ll~~~~~~~e~lq~el~~lq~e~~~~keevke~~qalee 452 (720)
+++|++++..+.+.|+.--++ -....++..+.|.+++..|+...+-++..++|.+..+++
T Consensus 223 ~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 223 REEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN 285 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 333444444444444333322 233445566778888888888888888888885555555
No 368
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=36.34 E-value=4.1e+02 Score=25.75 Aligned_cols=36 Identities=6% Similarity=0.160 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 462 QEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKD 497 (720)
Q Consensus 462 ~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~ 497 (720)
+.-..+..+.+.....+..-...+..|..|.+.|+.
T Consensus 61 ~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 61 EAQAQLRQQLAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 333344444444555555555555555555555543
No 369
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=36.24 E-value=3.3e+02 Score=32.40 Aligned_cols=25 Identities=36% Similarity=0.336 Sum_probs=11.5
Q ss_pred HHHHHH-HHHHHHHHHhHHH-HHHHHH
Q psy5718 620 LYQQLD-EKDEEINQQSQYA-EKLKEQ 644 (720)
Q Consensus 620 ~~~q~~-~lrdei~~k~~~~-~~l~~~ 644 (720)
|+.|+. .+..+++...... .+|+.+
T Consensus 510 Ld~ql~~a~~~~~~~~~~~~~~~l~~~ 536 (555)
T TIGR03545 510 LDKLLAKAFKKEIAAQIEKAKAKLKAK 536 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 4555554444433 444444
No 370
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=35.88 E-value=2.8e+02 Score=23.67 Aligned_cols=13 Identities=23% Similarity=0.440 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHh
Q psy5718 426 QGEMTRLTQENES 438 (720)
Q Consensus 426 q~el~~lq~e~~~ 438 (720)
|..+.++...++.
T Consensus 11 r~rLd~~~rk~~~ 23 (69)
T PF14197_consen 11 RNRLDSLTRKNSV 23 (69)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 371
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=35.83 E-value=4e+02 Score=25.49 Aligned_cols=6 Identities=17% Similarity=-0.031 Sum_probs=2.2
Q ss_pred HHhhhh
Q psy5718 519 EIGLVI 524 (720)
Q Consensus 519 e~~~~~ 524 (720)
+-+..+
T Consensus 110 eeSe~l 115 (150)
T PF07200_consen 110 EESEEL 115 (150)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 372
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=35.74 E-value=2.5e+02 Score=23.15 Aligned_cols=35 Identities=31% Similarity=0.508 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh
Q psy5718 423 EQLQGEMTRLTQENESAKEEVKEVLQALEELAVNY 457 (720)
Q Consensus 423 e~lq~el~~lq~e~~~~keevke~~qaleel~~n~ 457 (720)
..|+.++..++.+..++++|-.-..+.|-+.+-.|
T Consensus 20 dqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~sY 54 (56)
T PF04728_consen 20 DQLSSDVNALRADVQAAKEEAARANQRLDNIAQSY 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhc
Confidence 45566666666666777777666666676666665
No 373
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=35.74 E-value=3.6e+02 Score=24.93 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy5718 468 NKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTN 512 (720)
Q Consensus 468 ~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~ 512 (720)
......|.++|..+.+.+..++.|+..|.=-..+--|||+-+..-
T Consensus 25 Q~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~E 69 (102)
T PF10205_consen 25 QAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEE 69 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567888888888888888888888888888888887764443
No 374
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=35.54 E-value=9.1e+02 Score=29.54 Aligned_cols=30 Identities=13% Similarity=0.243 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5718 484 TLNTTSTELQQIKDMSNHQKKRINEMLTNL 513 (720)
Q Consensus 484 ~~~~l~~el~~l~~~~~~~~kr~~e~~~~l 513 (720)
.+...+.++.+|+.-....++-...+++.+
T Consensus 370 ~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~ 399 (754)
T TIGR01005 370 QAGEQQVDLDALQRDAAAKRQLYESYLTNY 399 (754)
T ss_pred hCcHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666666665555554444444433
No 375
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=34.96 E-value=3.8e+02 Score=24.97 Aligned_cols=89 Identities=16% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 412 KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTE 491 (720)
Q Consensus 412 eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~e 491 (720)
.|...........++..+..|+...+..|....++ .++=++++.-+..|..+.........+|+++
T Consensus 1 ~ee~~~l~as~~el~n~La~Le~slE~~K~S~~eL--------------~kqkd~L~~~l~~L~~q~~s~~qr~~eLqak 66 (107)
T PF09304_consen 1 KEEKEALEASQNELQNRLASLERSLEDEKTSQGEL--------------AKQKDQLRNALQSLQAQNASRNQRIAELQAK 66 (107)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHH--------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHHHHHHH-HHHHHHHH
Q psy5718 492 LQQIKDMSNHQKKRIN-EMLTNLLK 515 (720)
Q Consensus 492 l~~l~~~~~~~~kr~~-e~~~~l~~ 515 (720)
+..+...-.. .|=.. +|-+.+.|
T Consensus 67 i~ea~~~le~-eK~ak~~l~~r~~k 90 (107)
T PF09304_consen 67 IDEARRNLED-EKQAKLELESRLLK 90 (107)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHH
No 376
>KOG4460|consensus
Probab=34.90 E-value=8.5e+02 Score=29.01 Aligned_cols=81 Identities=17% Similarity=0.307 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHH----HHHHHHHHHHHHHHHHHHH
Q psy5718 408 KEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEV----ETKNKEFETLTEELTLKQT 483 (720)
Q Consensus 408 keq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~----e~~~~e~~~l~~el~~~~~ 483 (720)
+++--+.++.++.+.+.+...-.+|.++.+.+++.-..+.+.+..|-...-.....+ -+-++|.+.+..++..+.+
T Consensus 597 k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~ 676 (741)
T KOG4460|consen 597 KKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIPDQLRHLGN 676 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhHHHHHHHHH
Confidence 333344566667777777777778888888888887777777766655443322211 1224444555555444444
Q ss_pred HHHHH
Q psy5718 484 TLNTT 488 (720)
Q Consensus 484 ~~~~l 488 (720)
.+.++
T Consensus 677 ~iET~ 681 (741)
T KOG4460|consen 677 AIETV 681 (741)
T ss_pred HHHHH
Confidence 44443
No 377
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=34.87 E-value=2.2e+02 Score=23.68 Aligned_cols=50 Identities=26% Similarity=0.498 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 388 RDYEQLQGEMTRLTQENESAKEEV----------KELITTARRDYEQLQGEMTRLTQENE 437 (720)
Q Consensus 388 ~l~~ql~~Ei~~~~q~~ekLkeq~----------eell~~~~~~~e~lq~el~~lq~e~~ 437 (720)
.+..+|+.++......++++...+ .+.+...+..++.++.++..|+..++
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~ 63 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALE 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666555 44555555555555555555554433
No 378
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=34.67 E-value=8.6e+02 Score=29.03 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHhHHh
Q psy5718 507 NEMLTNLLKDLCEIG 521 (720)
Q Consensus 507 ~e~~~~l~~dl~e~~ 521 (720)
+.+-..+..-|.+.+
T Consensus 374 ~~L~~~v~~eL~~L~ 388 (557)
T COG0497 374 KELEKEVTAELKALA 388 (557)
T ss_pred HHHHHHHHHHHHhcC
Confidence 333334444444333
No 379
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=34.65 E-value=6.6e+02 Score=27.68 Aligned_cols=83 Identities=16% Similarity=0.260 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5718 438 SAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQT--------TLNTTSTELQQIKDMSNHQKKRINEM 509 (720)
Q Consensus 438 ~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~--------~~~~l~~el~~l~~~~~~~~kr~~e~ 509 (720)
..+.++.++...|.++...|....=.+...+.+++.|...+..... .+.+...+++.|+.-..-.++...-+
T Consensus 218 ~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~ 297 (362)
T TIGR01010 218 TLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAA 297 (362)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555666556666666777777777777777765443 35666778888877776666666665
Q ss_pred HHHHHHHHhHH
Q psy5718 510 LTNLLKDLCEI 520 (720)
Q Consensus 510 ~~~l~~dl~e~ 520 (720)
++.+-.--.+-
T Consensus 298 l~r~~~a~~~~ 308 (362)
T TIGR01010 298 LTSLQQTRVEA 308 (362)
T ss_pred HHHHHHHHHHH
Confidence 55554433333
No 380
>KOG0982|consensus
Probab=34.63 E-value=7.7e+02 Score=28.42 Aligned_cols=66 Identities=18% Similarity=0.154 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHH-------HHHHHHHHHHHHHH
Q psy5718 412 KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQE-------VETKNKEFETLTEE 477 (720)
Q Consensus 412 eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e-------~e~~~~e~~~l~~e 477 (720)
+.+++..+.-.+++-.+..+.-++++++...+....+-=+.++....+-.++ ++++.++++.++..
T Consensus 317 Rs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~ 389 (502)
T KOG0982|consen 317 RSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRRR 389 (502)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666667777777777777777776665444333344443332222 44445555444443
No 381
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=34.59 E-value=3.4e+02 Score=24.35 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy5718 424 QLQGEMTRLTQENESAKEEVKEVLQAL 450 (720)
Q Consensus 424 ~lq~el~~lq~e~~~~keevke~~qal 450 (720)
+++.++..|+.++..+..|+..+...|
T Consensus 46 rwek~v~~L~~e~~~l~~E~e~L~~~l 72 (87)
T PF12709_consen 46 RWEKKVDELENENKALKRENEQLKKKL 72 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666665555544433
No 382
>KOG0240|consensus
Probab=34.57 E-value=8.7e+02 Score=29.02 Aligned_cols=83 Identities=20% Similarity=0.235 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 412 KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTE 491 (720)
Q Consensus 412 eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~e 491 (720)
.+.+.+..+.+.....+++......+.++.++.+-...+-.-...|++...+.-..+.+++...+++.+..+.+.+|-..
T Consensus 420 ~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~~~ 499 (607)
T KOG0240|consen 420 TERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTALEELAVN 499 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444555667777777777788888777777777888899999998888888888888877776666666544
Q ss_pred HHH
Q psy5718 492 LQQ 494 (720)
Q Consensus 492 l~~ 494 (720)
..+
T Consensus 500 ~~~ 502 (607)
T KOG0240|consen 500 YDQ 502 (607)
T ss_pred hhH
Confidence 433
No 383
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=34.52 E-value=6.1e+02 Score=27.23 Aligned_cols=68 Identities=18% Similarity=0.320 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH------------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 419 RRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELA------------VNYDQKSQEVETKNKEFETLTEELTLKQTTLN 486 (720)
Q Consensus 419 ~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~------------~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~ 486 (720)
...+..+..++..++.++..+..++....+.+..-. ..|.++...++....+++.+..++....+.+.
T Consensus 134 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~ 213 (301)
T PF14362_consen 134 DAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAALD 213 (301)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344445555555566655555555555444433211 12444444455555444444444444443333
No 384
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=34.39 E-value=1.3e+02 Score=27.73 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhhHHHHH
Q psy5718 426 QGEMTRLTQENESAKEEVK 444 (720)
Q Consensus 426 q~el~~lq~e~~~~keevk 444 (720)
+.++.+++++|+.++.+|.
T Consensus 40 ~~e~~~l~~~n~~L~~eI~ 58 (105)
T PRK00888 40 QQTNAKLKARNDQLFAEID 58 (105)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444443
No 385
>KOG2391|consensus
Probab=33.43 E-value=3.8e+02 Score=29.86 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy5718 481 KQTTLNTTSTELQQIKDMSNHQKKRINE 508 (720)
Q Consensus 481 ~~~~~~~l~~el~~l~~~~~~~~kr~~e 508 (720)
+.+....|+.++..|+.-+..-++++.|
T Consensus 251 L~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 251 LVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3345666778888888888888888887
No 386
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=33.18 E-value=6.1e+02 Score=26.80 Aligned_cols=68 Identities=24% Similarity=0.348 Sum_probs=30.0
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy5718 450 LEELAVNYDQKSQEVETKNKEFET----------LTEELTLKQTTLNTTSTE-LQQIKDMSNHQKKRINEMLTNLLKDL 517 (720)
Q Consensus 450 leel~~n~d~~~~e~e~~~~e~~~----------l~~el~~~~~~~~~l~~e-l~~l~~~~~~~~kr~~e~~~~l~~dl 517 (720)
++-.+.+|++-.++++..+...+. .+....+....|+...-+ +-.+.....|+.+.....+-.||..|
T Consensus 129 l~K~K~~Y~~~~~~~e~ar~K~~~a~~~gk~~~Ka~~k~~~~~~km~~~kN~Yll~i~~aN~~k~~Yy~~~lP~lLd~l 207 (234)
T cd07686 129 LEKLKCSYRQLTKEVNSAKEKYKDAVAKGKETEKARERYDKATMKLHMLHNQYVLAVKGAQLHQHQYYDFTLPLLLDSL 207 (234)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555444433 222333333333333311 23344445555555554444444433
No 387
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=32.91 E-value=5e+02 Score=25.73 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q psy5718 399 RLTQENESAKEEVKELITTARRDYEQLQGE-MTRLTQE 435 (720)
Q Consensus 399 ~~~q~~ekLkeq~eell~~~~~~~e~lq~e-l~~lq~e 435 (720)
+...+.++++.+.++.+..++.+...+..+ ..++..+
T Consensus 55 ~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~ 92 (155)
T PRK06569 55 TLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESE 92 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555544444 4444443
No 388
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=32.73 E-value=6.6e+02 Score=27.11 Aligned_cols=20 Identities=30% Similarity=0.195 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhHHhh
Q psy5718 503 KKRINEMLTNLLKDLCEIGL 522 (720)
Q Consensus 503 ~kr~~e~~~~l~~dl~e~~~ 522 (720)
..+|.+.-..||..||||=.
T Consensus 163 ~~~~k~~~e~Ll~~LgeFLe 182 (268)
T PF11802_consen 163 IEKIKEYKEKLLSFLGEFLE 182 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888887743
No 389
>KOG3758|consensus
Probab=32.60 E-value=3.7e+02 Score=32.26 Aligned_cols=115 Identities=17% Similarity=0.314 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhhhh
Q psy5718 445 EVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVI 524 (720)
Q Consensus 445 e~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~~~ 524 (720)
+++.+|++..-..+.-+..|+....-.+.+..++....+...+|-.+.+++++..+.-.-| ..+++..+++- .+
T Consensus 68 e~l~ef~~i~~~l~~v~e~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~le~r-~kii~~Fl~~f-----qL 141 (655)
T KOG3758|consen 68 EFLKEFKEIKRRLDRVSEDVEKMANTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQLELR-KKIINAFLDNF-----QL 141 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc-----cc
Confidence 3444455555566666677888888999999999999999999999999999887766555 44566666653 23
Q ss_pred cCCCcccccCCccccchhhhHHHHHHHhhhhhhHhhHhhhhcc
Q psy5718 525 GSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDEQ 567 (720)
Q Consensus 525 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (720)
.+. ++.... .+|-|+|-|=-+==-+-.|+.+.+.|+.--.|
T Consensus 142 s~~-E~~~L~-~~g~i~e~FF~vL~rvqeIh~~~~~Ll~~~~~ 182 (655)
T KOG3758|consen 142 SSE-ELDLLT-ESGPIDEDFFKVLDRVQEIHDNCRLLLQTPNQ 182 (655)
T ss_pred ChH-HHHHHh-cCCcchHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 343 444332 34889999876666677788888888875444
No 390
>KOG2115|consensus
Probab=32.54 E-value=1.1e+03 Score=29.68 Aligned_cols=74 Identities=18% Similarity=0.190 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHH
Q psy5718 387 RRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQE 463 (720)
Q Consensus 387 ~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e 463 (720)
.+.+..||+.+..+-..+|-..- ..+.....+.=-....+..||.+...+=++|+++.+.+.++-.+-+.++..
T Consensus 238 ~~~~~~LQekLs~yLDvVE~~La---~eIs~~SdsFfha~~~~~~Lq~~~~d~~~~vk~Lre~i~~vd~~~~~~s~~ 311 (951)
T KOG2115|consen 238 LEANSALQEKLSHYLDVVELHLA---QEISKRSDSFFHAMTSLHNLQKELRDTMSEVKELRENIKEVDAENVRKSIK 311 (951)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH---HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34455666666666655554321 122223333345677888899999999999999999999976666555544
No 391
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=32.49 E-value=1e+03 Score=29.15 Aligned_cols=21 Identities=14% Similarity=0.010 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy5718 283 ARKDLKGLEDTVTKELQTLHN 303 (720)
Q Consensus 283 ~~~~Lk~ei~~Lk~EL~~l~n 303 (720)
....|..++..++.++.....
T Consensus 195 a~~~L~~ql~~l~~~l~~aE~ 215 (754)
T TIGR01005 195 AADFLAPEIADLSKQSRDAEA 215 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 336666677777776666533
No 392
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=32.46 E-value=3.5e+02 Score=27.23 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=20.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhh
Q psy5718 430 TRLTQENESAKEEVKEVLQALEELAVNYDQKS 461 (720)
Q Consensus 430 ~~lq~e~~~~keevke~~qaleel~~n~d~~~ 461 (720)
..++......+...-.+...|+.++.+|-++|
T Consensus 140 e~~~~~~k~LrnKa~~L~~eL~~F~~~yL~~~ 171 (171)
T PF04799_consen 140 EEIQSKSKTLRNKANWLESELERFQEQYLQKS 171 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 44455666666677777778888888886653
No 393
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=32.15 E-value=1.9e+02 Score=23.74 Aligned_cols=42 Identities=19% Similarity=0.410 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhH
Q psy5718 421 DYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQ 462 (720)
Q Consensus 421 ~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~ 462 (720)
+..++...++.++.+|+..++.+.++.+-...+-.=|+.-++
T Consensus 8 ~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs~ 49 (55)
T PF05377_consen 8 ELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVVSN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334445555555666666666666555555555555655444
No 394
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=32.02 E-value=1.5e+02 Score=27.24 Aligned_cols=37 Identities=8% Similarity=0.039 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 463 EVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMS 499 (720)
Q Consensus 463 e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~ 499 (720)
....++++++.+..++..+..++..|..|+..|++-.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~ 64 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQ 64 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcH
Confidence 4566777778888888888888999999999998743
No 395
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=32.02 E-value=2.2e+02 Score=26.61 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Q psy5718 484 TLNTTSTELQQIKDMSNHQKKRINE 508 (720)
Q Consensus 484 ~~~~l~~el~~l~~~~~~~~kr~~e 508 (720)
.+..+-.|-..|+--..|-|+|+.+
T Consensus 30 ~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 30 QLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444555554
No 396
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=32.00 E-value=2.7e+02 Score=26.82 Aligned_cols=13 Identities=38% Similarity=0.544 Sum_probs=0.0
Q ss_pred Hhhhhcccccchh
Q psy5718 356 VRDNADLRCELPK 368 (720)
Q Consensus 356 v~dn~~l~~elp~ 368 (720)
+.+|+++.+-+|.
T Consensus 15 ~~~nPdP~~~~Pv 27 (141)
T PF13874_consen 15 LRDNPDPSRLIPV 27 (141)
T ss_dssp -------------
T ss_pred HHHCcCCcCeeee
Confidence 4678887554553
No 397
>PF06193 Orthopox_A5L: Orthopoxvirus A5L protein-like; InterPro: IPR010396 This family consists of several Orthopoxvirus A5L proteins. The vaccinia virus WR A5L open reading frame (corresponding to open reading frame A4L in vaccinia virus Copenhagen) encodes an immunodominant late protein found in the core of the vaccinia virion. The A5 protein appears to be required for the immature virion to form the brick-shaped intracellular mature virion [].
Probab=31.90 E-value=2e+02 Score=28.70 Aligned_cols=49 Identities=20% Similarity=0.365 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy5718 463 EVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLC 518 (720)
Q Consensus 463 e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~ 518 (720)
.+.+..+|++.+..+...+++.-..|-++++.-|+. ....++.||+||.
T Consensus 108 t~~~IikEl~dik~~t~~LQ~es~~Lv~DIs~AKe~-------T~~AIn~IM~~L~ 156 (166)
T PF06193_consen 108 TKDNIIKELNDIKDETSSLQAESNSLVTDISDAKES-------TQDAINDIMKDLS 156 (166)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 367777888888888888888888887777776665 4567788888875
No 398
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=31.83 E-value=2.1e+02 Score=26.66 Aligned_cols=50 Identities=22% Similarity=0.282 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5718 444 KEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSN 500 (720)
Q Consensus 444 ke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~ 500 (720)
+++..+|..|..+. ....+++..|...+.++..++..|+-|.+.|++.-.
T Consensus 4 ~elfd~l~~le~~l-------~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 4 KEIFDALDDLEQNL-------GVLLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred hHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554444 444444555555555555556666666666665544
No 399
>KOG0962|consensus
Probab=31.40 E-value=1.3e+03 Score=30.27 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccccccchhHHHHHHhhhccchH
Q psy5718 620 LYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQARKDLKGLED 676 (720)
Q Consensus 620 ~~~q~~~lrdei~~k~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (720)
+-++.+.++.+..+..+.|.++..- ..++-.....+...-.+.+|...|+.-|.+
T Consensus 838 ~rke~E~~~k~~~~~~~~i~~l~~~--~~e~k~~~~~~~~~l~~~~qle~~~~~l~e 892 (1294)
T KOG0962|consen 838 LRKEIECLQKEVIEQEREISRLINL--RNELKEEKQKIERSLARLQQLEEDIEELSE 892 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3344445555555555555444443 333333333333444455555555544443
No 400
>KOG1850|consensus
Probab=31.04 E-value=7.7e+02 Score=27.35 Aligned_cols=143 Identities=17% Similarity=0.271 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy5718 419 RRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTL-KQTTLNTTSTELQQIKD 497 (720)
Q Consensus 419 ~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~-~~~~~~~l~~el~~l~~ 497 (720)
.-.+..+|..|..=...|+...++-.++-+.|.+|+..|...-+.++......+ +-+++-. +.-...-|...+..+..
T Consensus 115 qvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~ke-l~~ql~~aKlq~~~~l~a~~ee~~~ 193 (391)
T KOG1850|consen 115 QVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKE-LWEQLGKAKLQEIKLLTAKLEEASI 193 (391)
T ss_pred HhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 334456677777777788888888889999999999999988888877766666 6555542 22222222222222222
Q ss_pred H-HhHHHHHHHHHHHHHHHHHhHHhhhhcCCCcccccCCccccchhhhH--HHH--HHHhhhhhhHhhHhhhhcccc
Q psy5718 498 M-SNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFT--VAR--LYISKMKWRNGETVKEDEQVN 569 (720)
Q Consensus 498 ~-~~~~~kr~~e~~~~l~~dl~e~~~~~~~~~~~~~~~~~~~~~e~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~ 569 (720)
. ..++.+. .++..-.+.|+...|..+-.. ...-..+. +||+ ++. =.+.+.|-|...|-+.|++||
T Consensus 194 ~e~~~glEK-d~lak~~~e~~~~~e~qlK~q-----l~lY~aKy-eefq~tl~KSNE~F~~fK~E~ekmtKk~kklE 263 (391)
T KOG1850|consen 194 QEKKSGLEK-DELAKIMLEEMKQVEGQLKEQ-----LALYMAKY-EEFQTTLAKSNELFTKFKQEMEKMTKKIKKLE 263 (391)
T ss_pred HHHHhhhhH-HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2233333 333555667777777766443 11111222 2332 111 124467778888888888877
No 401
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=30.93 E-value=7.5e+02 Score=27.21 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5718 490 TELQQIKDMSNHQKKRINEMLTNLLK 515 (720)
Q Consensus 490 ~el~~l~~~~~~~~kr~~e~~~~l~~ 515 (720)
.++..+.+...--.+|+.+|...+.-
T Consensus 169 q~~~~~~~~l~~leqRi~DL~~~~~v 194 (333)
T PF05816_consen 169 QELADLEQALFRLEQRIQDLQLSRQV 194 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777788888888776643
No 402
>PRK09343 prefoldin subunit beta; Provisional
Probab=30.89 E-value=4.5e+02 Score=24.64 Aligned_cols=33 Identities=39% Similarity=0.559 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy5718 422 YEQLQGEMTRLTQENESAKEEVKEVLQALEELA 454 (720)
Q Consensus 422 ~e~lq~el~~lq~e~~~~keevke~~qaleel~ 454 (720)
|..+|.++..+...-.....+.+|...+++||.
T Consensus 16 ~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~ 48 (121)
T PRK09343 16 LQQLQQQLERLLQQKSQIDLELREINKALEELE 48 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555544
No 403
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=30.79 E-value=4.7e+02 Score=30.54 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 469 KEFETLTEELTLKQTTLNTTSTELQQI 495 (720)
Q Consensus 469 ~e~~~l~~el~~~~~~~~~l~~el~~l 495 (720)
.+...+..++......+..++.+|..+
T Consensus 145 ~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 145 TEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444444444444433
No 404
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=30.77 E-value=2.3e+02 Score=28.20 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 470 EFETLTEELTLKQTTLNTTSTELQQIKDM 498 (720)
Q Consensus 470 e~~~l~~el~~~~~~~~~l~~el~~l~~~ 498 (720)
+++.|..|+..+...+..++.+...|-..
T Consensus 119 ~~e~Le~e~~~L~~~~~~~~eDY~~L~~I 147 (161)
T TIGR02894 119 RNEELEKELEKLRQRLSTIEEDYQTLIDI 147 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444333
No 405
>KOG4005|consensus
Probab=30.56 E-value=3.8e+02 Score=28.41 Aligned_cols=50 Identities=26% Similarity=0.292 Sum_probs=27.9
Q ss_pred chhhhHHHHHHHhhhhhhHhhHhhhhccccc----chhHHHHhhhCCCCCCcchhhcccC
Q psy5718 540 LEEEFTVARLYISKMKWRNGETVKEDEQVNL----ADPVDMAASIAPTPESAPASILPAI 595 (720)
Q Consensus 540 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (720)
++++|++-|+-.- -....-|....| .-+-....+..-+.|..++.+|.-+
T Consensus 209 ~~~~~~Is~~~~l------t~~~~~c~~~dl~~~~~as~~s~~~~~~~ae~~~~p~l~~~ 262 (292)
T KOG4005|consen 209 VDEEFDISRLEEL------TESLLACITADLETGAGASSPSAAQDAGNAERLPGPMLGPA 262 (292)
T ss_pred cchhhhHHHHHHH------HHHHHHHhhhcccccCCCCChhhhhhccCcccCCCcccchH
Confidence 5788998887432 233334554343 2233334455566777788874443
No 406
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=30.41 E-value=4.7e+02 Score=24.67 Aligned_cols=68 Identities=24% Similarity=0.396 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy5718 388 RDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVN 456 (720)
Q Consensus 388 ~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n 456 (720)
.+.......|..+...+..|......++.... .-..+..+|..+..+....-.+++..+..|+.....
T Consensus 6 ~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~-~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~ 73 (151)
T cd00179 6 EEVEEIRGNIDKISEDVEELQKLHSQLLTAPD-ADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQ 73 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666777777776666666666554 234566777777777666666666666666654433
No 407
>PF13166 AAA_13: AAA domain
Probab=30.32 E-value=1e+03 Score=28.63 Aligned_cols=57 Identities=16% Similarity=0.317 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy5718 461 SQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLC 518 (720)
Q Consensus 461 ~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~ 518 (720)
..++....+.+..+..++.........+..++..|+..-.. -....+-++..|+.+|
T Consensus 416 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~~~~~~iN~~L~~~g 472 (712)
T PF13166_consen 416 QKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKN-TEPAADRINEELKRLG 472 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhC
Confidence 34444455555666666666666666666665555543221 1233444555666653
No 408
>PRK10869 recombination and repair protein; Provisional
Probab=30.23 E-value=9.9e+02 Score=28.35 Aligned_cols=86 Identities=20% Similarity=0.310 Sum_probs=36.8
Q ss_pred HHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 423 EQLQGEM---TRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMS 499 (720)
Q Consensus 423 e~lq~el---~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~ 499 (720)
+.++.++ .+|+...-.+-+++-+....+++--..++ +....++.|..++.+....+..+-.+|...+...
T Consensus 299 ~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~-------~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~a 371 (553)
T PRK10869 299 AELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLD-------DQEDDLETLALAVEKHHQQALETAQKLHQSRQRY 371 (553)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433 34444444444555444444443222222 3333344444444444444444444444444332
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q psy5718 500 NHQKKRINEMLTNLLKDLC 518 (720)
Q Consensus 500 ~~~~kr~~e~~~~l~~dl~ 518 (720)
. +++..-++.-|+||+
T Consensus 372 A---~~l~~~v~~~L~~L~ 387 (553)
T PRK10869 372 A---KELAQLITESMHELS 387 (553)
T ss_pred H---HHHHHHHHHHHHHcC
Confidence 2 234444555555554
No 409
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=30.16 E-value=1.1e+03 Score=28.87 Aligned_cols=60 Identities=30% Similarity=0.515 Sum_probs=32.3
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy5718 450 LEELAVNYDQKSQEVETKNKEFETLTEELT-----------LKQTTLNTTSTELQQIKDMSNHQKKRINEML 510 (720)
Q Consensus 450 leel~~n~d~~~~e~e~~~~e~~~l~~el~-----------~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~ 510 (720)
|++|..-.+.++.-+..+ +.++...++|. .....+.+|+..|..+.....+..+-+.++=
T Consensus 407 leeL~~~L~e~qkll~ek-k~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLK 477 (786)
T PF05483_consen 407 LEELKKILAEKQKLLDEK-KQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELK 477 (786)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 666666666666433322 22333333332 3335566666666666666666666655543
No 410
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=30.08 E-value=6.4e+02 Score=26.11 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy5718 421 DYEQLQGEMTRLTQENESAKEEVKEVLQALEE 452 (720)
Q Consensus 421 ~~e~lq~el~~lq~e~~~~keevke~~qalee 452 (720)
+++..++++.+.+.+.+-..+.+-.+...+..
T Consensus 67 ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~ 98 (202)
T PF06818_consen 67 ELEVCENELQRKKNEAELLREKLGQLEAELAE 98 (202)
T ss_pred hHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHH
Confidence 44445555555555554444444433333333
No 411
>PRK14140 heat shock protein GrpE; Provisional
Probab=30.04 E-value=3.5e+02 Score=27.69 Aligned_cols=62 Identities=10% Similarity=0.087 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhHHhhhh
Q psy5718 463 EVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINE-MLTNLLKDLCEIGLVI 524 (720)
Q Consensus 463 e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e-~~~~l~~dl~e~~~~~ 524 (720)
.+++...+++.+..++..+...+.-+.+++++++.-....+..+.. -..++++||-.+-+-+
T Consensus 38 ~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnL 100 (191)
T PRK14140 38 LLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNF 100 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666666667777778777776665555443 3456777776666544
No 412
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=29.84 E-value=83 Score=35.98 Aligned_cols=74 Identities=24% Similarity=0.297 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccccccchhHHHHHHhhhccchHhHHHHHHHhhhh
Q psy5718 613 LEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQARKDLKGLEDTVTKELQTLHNL 688 (720)
Q Consensus 613 ~~~~~~~~~~q~~~lrdei~~k~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~el~~l~~l 688 (720)
++.-+..+..+++.||.+.++-++.|.+++.. ..+...-..+...+.++-....+.++.+|+.+...+..|.|+
T Consensus 33 ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~--~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~ 106 (425)
T PRK05431 33 LDEERRELQTELEELQAERNALSKEIGQAKRK--GEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNL 106 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34455777888889999999999999664433 111111111222334444455555556666666667777765
No 413
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=29.83 E-value=5e+02 Score=24.82 Aligned_cols=37 Identities=14% Similarity=0.233 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 461 SQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKD 497 (720)
Q Consensus 461 ~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~ 497 (720)
..+..++-++...+..+|....+.....-.+++.|+.
T Consensus 88 k~eYk~llk~y~~~~~~L~k~I~~~e~iI~~fe~i~~ 124 (126)
T PF09403_consen 88 KDEYKELLKKYKDLLNKLDKEIAEQEQIIDNFEKIQS 124 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555566666666665555555555555555543
No 414
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=29.75 E-value=3.5e+02 Score=31.06 Aligned_cols=12 Identities=17% Similarity=0.337 Sum_probs=7.2
Q ss_pred CCEEEEEeeCCC
Q psy5718 15 DSIRVVCRFRPL 26 (720)
Q Consensus 15 ~~IrV~vRVRPl 26 (720)
+...+++.+.|.
T Consensus 8 D~m~A~l~~~~~ 19 (451)
T PF03961_consen 8 DKMEAYLTLTPP 19 (451)
T ss_pred CCCEEEEEEEcC
Confidence 455666666654
No 415
>KOG4572|consensus
Probab=29.57 E-value=1.1e+03 Score=29.34 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q psy5718 618 ERLYQQLDEKDEEINQQSQYA 638 (720)
Q Consensus 618 ~~~~~q~~~lrdei~~k~~~~ 638 (720)
..|+...+.+||+|..-...+
T Consensus 1207 a~ld~d~dh~~de~ekdreqL 1227 (1424)
T KOG4572|consen 1207 AMLDIDIDHDRDEIEKDREQL 1227 (1424)
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 445555558888887765544
No 416
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=29.15 E-value=4.6e+02 Score=24.21 Aligned_cols=68 Identities=22% Similarity=0.226 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 426 QGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQ 493 (720)
Q Consensus 426 q~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~ 493 (720)
-.+-++|..-+.-+|.-|-+-.+.-..|......+.+.+-....|++-|.=.-.++...+..|+.|+.
T Consensus 4 a~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 4 AQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555656655555555555555555555555555555555555555556666666655
No 417
>PF13514 AAA_27: AAA domain
Probab=28.80 E-value=1.4e+03 Score=29.57 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=20.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 373 LRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELI 415 (720)
Q Consensus 373 ~~~~~Er~k~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~eell 415 (720)
....-.+....-+....+.....++.........+...+...+
T Consensus 603 ~~~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l 645 (1111)
T PF13514_consen 603 MRDWLARREAALEAAEELRAARAELEALRARRAAARAALAAAL 645 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443434444444444455555555555555554333
No 418
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=28.80 E-value=8.2e+02 Score=26.98 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHH
Q psy5718 464 VETKNKEFETLTEELTLKQTTLNTTSTELQQIKDM-SNHQKKRINEM 509 (720)
Q Consensus 464 ~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~-~~~~~kr~~e~ 509 (720)
+..+.++...+..+|..+...-.+++..|++=++. .|---||+..|
T Consensus 144 i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l 190 (310)
T PF09755_consen 144 IERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKL 190 (310)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555566666666666665 55566666554
No 419
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=28.78 E-value=1.1e+02 Score=37.54 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=18.5
Q ss_pred HHhhhccchHhHHHHHHHhhhhHHH
Q psy5718 667 ARKDLKGLEDTVTKELQTLHNLRKL 691 (720)
Q Consensus 667 ~~~~~~~~~~tv~~el~~l~~l~~~ 691 (720)
...+|..+.+.+.+|-+..|.+.++
T Consensus 259 ~~~~l~~~~~~l~~~~~~~~~~~~~ 283 (759)
T PF01496_consen 259 YAEELEAWYEYLRKEKEIYEALNKF 283 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556788888888888887776644
No 420
>KOG1103|consensus
Probab=28.12 E-value=8.9e+02 Score=27.12 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 460 KSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDM 498 (720)
Q Consensus 460 ~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~ 498 (720)
--+.+++...|-+.|+.++......-..+..|.+.|++.
T Consensus 243 vek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkei 281 (561)
T KOG1103|consen 243 VEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEI 281 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334577777888888888887777777788888888776
No 421
>KOG4572|consensus
Probab=28.06 E-value=1.3e+03 Score=28.96 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5718 483 TTLNTTSTELQQIKDMSNHQKKRINEMLTNL 513 (720)
Q Consensus 483 ~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l 513 (720)
-.+.+.++|...+++.....+-...++.+.|
T Consensus 1059 ~efAa~eaemdeik~~~~edrakqkei~k~L 1089 (1424)
T KOG4572|consen 1059 DEFAAIEAEMDEIKDGKCEDRAKQKEIDKIL 1089 (1424)
T ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 4566677777777776555444444444443
No 422
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=27.67 E-value=5.5e+02 Score=24.56 Aligned_cols=90 Identities=14% Similarity=0.284 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHH
Q psy5718 385 TARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEV 464 (720)
Q Consensus 385 e~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~ 464 (720)
.+...|++|...=++.........+..+..++....-+......+.++...-+ .+-+-. ...+|..+|+.--..+
T Consensus 31 ~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~-~r~yk~----eYk~llk~y~~~~~~L 105 (126)
T PF09403_consen 31 QLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSK-VRWYKD----EYKELLKKYKDLLNKL 105 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG-GSTTHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc-hhHHHH----HHHHHHHHHHHHHHHH
Confidence 33444444444323222322333333344444444445555555555554321 111112 2444455555555555
Q ss_pred HHHHHHHHHHHHHHH
Q psy5718 465 ETKNKEFETLTEELT 479 (720)
Q Consensus 465 e~~~~e~~~l~~el~ 479 (720)
+..-++.+..-.+..
T Consensus 106 ~k~I~~~e~iI~~fe 120 (126)
T PF09403_consen 106 DKEIAEQEQIIDNFE 120 (126)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555444444444443
No 423
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=27.51 E-value=5.9e+02 Score=28.34 Aligned_cols=46 Identities=30% Similarity=0.353 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5718 464 VETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEM 509 (720)
Q Consensus 464 ~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~ 509 (720)
.+++.++.++|.+.-..-..++.++..-..+-.....|||||+.++
T Consensus 6 W~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L 51 (330)
T PF07851_consen 6 WEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKEL 51 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444433333333333333333333334455555554443
No 424
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.50 E-value=8.8e+02 Score=26.90 Aligned_cols=29 Identities=10% Similarity=0.180 Sum_probs=17.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHH
Q psy5718 492 LQQIKDMSNHQKKRINEMLTNLLKDLCEI 520 (720)
Q Consensus 492 l~~l~~~~~~~~kr~~e~~~~l~~dl~e~ 520 (720)
+..+..+...+..++..++..+--+...+
T Consensus 273 l~~~~~~~~~~~~~~~~ll~~~p~~~~~~ 301 (359)
T COG1463 273 LRPLATLLVDYLPGLEQLLHGLPTYAANL 301 (359)
T ss_pred HHHHHHHHHhhHHHHHHHHHhcchhhhhh
Confidence 55555555566666666666665565555
No 425
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=27.46 E-value=4.8e+02 Score=25.04 Aligned_cols=11 Identities=36% Similarity=0.431 Sum_probs=5.9
Q ss_pred HhHHHHHHHHH
Q psy5718 499 SNHQKKRINEM 509 (720)
Q Consensus 499 ~~~~~kr~~e~ 509 (720)
.....+||+|+
T Consensus 128 ~~~~~~riaEl 138 (139)
T PF13935_consen 128 IADYAKRIAEL 138 (139)
T ss_pred HHHHHHHHHhc
Confidence 33344477774
No 426
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=27.36 E-value=54 Score=30.04 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5718 469 KEFETLTEELTLKQTTLNTTSTELQQIKDMSNH 501 (720)
Q Consensus 469 ~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~ 501 (720)
..+..|..+|..+...+.+++.+|..|+.+..+
T Consensus 51 ~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~ 83 (100)
T PF06428_consen 51 EKNEQLEKQLKEKEALLESLQAQLKELKTVMES 83 (100)
T ss_dssp HHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666667777777777777766433
No 427
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=27.35 E-value=3.6e+02 Score=22.29 Aligned_cols=49 Identities=12% Similarity=0.336 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy5718 462 QEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEML 510 (720)
Q Consensus 462 ~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~ 510 (720)
..++.+..+...|.....++...++++..++...++-...--.||--+-
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3466677777777777777778888888888888888777777776543
No 428
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=27.21 E-value=6.2e+02 Score=25.01 Aligned_cols=16 Identities=38% Similarity=0.399 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy5718 464 VETKNKEFETLTEELT 479 (720)
Q Consensus 464 ~e~~~~e~~~l~~el~ 479 (720)
..+++++-..|...|.
T Consensus 121 ~nEknkeK~~Lv~~L~ 136 (159)
T PF04949_consen 121 FNEKNKEKAQLVTRLM 136 (159)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 429
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=27.11 E-value=1.2e+03 Score=28.46 Aligned_cols=81 Identities=14% Similarity=0.168 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy5718 441 EEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLN---TTSTELQQIKDMSNHQKKRINEMLTNLLKDL 517 (720)
Q Consensus 441 eevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~---~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl 517 (720)
.++.++...+.++...|....-.+..+..+...|..+++.....+. +.+.++.+|+.-.... .++...||.-.
T Consensus 318 ~ql~~l~~~~~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~----~~lY~~lL~r~ 393 (726)
T PRK09841 318 NQLNELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAG----RAVYLQLLNRQ 393 (726)
T ss_pred HHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 3344444444555666777777777777777777777666554444 3444444444433333 34555566666
Q ss_pred hHHhhhhc
Q psy5718 518 CEIGLVIG 525 (720)
Q Consensus 518 ~e~~~~~~ 525 (720)
.|.....+
T Consensus 394 ~e~~i~~a 401 (726)
T PRK09841 394 QELSISKS 401 (726)
T ss_pred HHHHHHhc
Confidence 66655543
No 430
>PRK10698 phage shock protein PspA; Provisional
Probab=26.41 E-value=7.5e+02 Score=25.71 Aligned_cols=63 Identities=10% Similarity=0.163 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy5718 444 KEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLT 511 (720)
Q Consensus 444 ke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~ 511 (720)
+.....+..|...|++....++.+...+..|...+.+..++-..|-.. .....-++++.+++.
T Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR-----~~~A~a~~~~~~~~~ 157 (222)
T PRK10698 95 QKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLR-----HQAASSSRDVRRQLD 157 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHh
Confidence 334444455555555555555555555555555555555544444222 223444455555443
No 431
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=26.40 E-value=7.4e+02 Score=26.70 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5718 285 KDLKGLEDTVTKELQTL 301 (720)
Q Consensus 285 ~~Lk~ei~~Lk~EL~~l 301 (720)
+..-..|+..+.-...|
T Consensus 76 ~t~mk~IeeVq~S~~~L 92 (264)
T PF07246_consen 76 KTMMKIIEEVQLSISNL 92 (264)
T ss_pred hhHHHHHHHHhcccccc
Confidence 33444455554444444
No 432
>PRK14155 heat shock protein GrpE; Provisional
Probab=26.35 E-value=2.7e+02 Score=28.84 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhHHhhhh
Q psy5718 462 QEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRIN-EMLTNLLKDLCEIGLVI 524 (720)
Q Consensus 462 ~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~-e~~~~l~~dl~e~~~~~ 524 (720)
.+.++...+++.+..++.++...+.-+.+|+++++.-....+..+. -...++++||=+|-+-+
T Consensus 13 ~~~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnL 76 (208)
T PRK14155 13 FEADDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLLGAADNL 76 (208)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhH
Confidence 3446666777778888888888888888999999888777665543 34667888887776655
No 433
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=26.31 E-value=1.8e+02 Score=31.42 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Q psy5718 464 VETKNKEFETLTEELTLKQTTLN----TTSTELQQIKDMSN 500 (720)
Q Consensus 464 ~e~~~~e~~~l~~el~~~~~~~~----~l~~el~~l~~~~~ 500 (720)
+.+..+||+.|+.++.++.+.+. .++.|.++|+++-+
T Consensus 68 ~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 68 VNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444444444443322222 25555555555433
No 434
>KOG3091|consensus
Probab=26.29 E-value=1.1e+03 Score=27.65 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=18.1
Q ss_pred HHHhhhhcccccchhHHHhhhhhHHHHHHHHHHHHHH
Q psy5718 354 QLVRDNADLRCELPKLEKRLRATMERVKLITTARRDY 390 (720)
Q Consensus 354 qLv~dn~~l~~elp~~~~~~~~~~Er~k~~ee~~~l~ 390 (720)
|-+.||+++..-+|....=-..-..|+|+..+....+
T Consensus 317 QA~~dnp~s~kliPVpvvGF~dL~~R~K~Q~q~~~~~ 353 (508)
T KOG3091|consen 317 QAMKDNPPSNKLIPVPVVGFEDLRQRLKVQDQEVKQH 353 (508)
T ss_pred HHhhcCCCcccccceeccchHHHHHHHHHHHHHHHHH
Confidence 3345777766555533221122344566666554443
No 435
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=26.24 E-value=4e+02 Score=24.42 Aligned_cols=29 Identities=24% Similarity=0.247 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 462 QEVETKNKEFETLTEELTLKQTTLNTTST 490 (720)
Q Consensus 462 ~e~e~~~~e~~~l~~el~~~~~~~~~l~~ 490 (720)
+.+-.+..++..++.++....+.+..+..
T Consensus 65 ~dv~~L~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 65 DDVHDLQLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444555555555555555555544433
No 436
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=26.09 E-value=7.8e+02 Score=25.80 Aligned_cols=11 Identities=45% Similarity=0.341 Sum_probs=4.5
Q ss_pred CcchhhcccCc
Q psy5718 586 SAPASILPAIP 596 (720)
Q Consensus 586 ~~~~~~~~~~~ 596 (720)
..+|+-|+.|+
T Consensus 207 ~~v~~~La~lk 217 (225)
T COG1842 207 SAVDSRLAALK 217 (225)
T ss_pred ccHHHHHHHHH
Confidence 33444444443
No 437
>KOG2264|consensus
Probab=26.05 E-value=3.8e+02 Score=31.83 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 466 TKNKEFETLTEELTLKQTTLNTT 488 (720)
Q Consensus 466 ~~~~e~~~l~~el~~~~~~~~~l 488 (720)
+.+..++.+..++-+++..+.+|
T Consensus 111 ~~n~kiEelk~~i~~~q~eL~~L 133 (907)
T KOG2264|consen 111 EINTKIEELKRLIPQKQLELSAL 133 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 33333333333333333333333
No 438
>PF13166 AAA_13: AAA domain
Probab=25.96 E-value=1.2e+03 Score=28.02 Aligned_cols=26 Identities=35% Similarity=0.452 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy5718 427 GEMTRLTQENESAKEEVKEVLQALEE 452 (720)
Q Consensus 427 ~el~~lq~e~~~~keevke~~qalee 452 (720)
.....+....+..++.+..+..+|++
T Consensus 322 ~~~~~~~~~~~~l~~~l~~l~~~L~~ 347 (712)
T PF13166_consen 322 EDKEELKSAIEALKEELEELKKALEK 347 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555
No 439
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=25.90 E-value=4.4e+02 Score=22.83 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy5718 425 LQGEMTRLTQENESAKEEVKEVLQALEE 452 (720)
Q Consensus 425 lq~el~~lq~e~~~~keevke~~qalee 452 (720)
+...+.+|+-||=.+|=.+--+...|..
T Consensus 5 qe~~i~~L~KENF~LKLrI~fLee~l~~ 32 (75)
T PF07989_consen 5 QEEQIDKLKKENFNLKLRIYFLEERLQK 32 (75)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 4556777777888877777776666663
No 440
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=25.78 E-value=65 Score=32.40 Aligned_cols=45 Identities=20% Similarity=0.353 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy5718 406 SAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 450 (720)
Q Consensus 406 kLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qal 450 (720)
.....+...+.....+.++++.++.+|+.||+.+.++.....+.|
T Consensus 8 q~~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~l 52 (181)
T PF09311_consen 8 QVMRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKL 52 (181)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHT-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555677777888888999999999999999999988877776
No 441
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=25.68 E-value=5.9e+02 Score=24.29 Aligned_cols=44 Identities=27% Similarity=0.457 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q psy5718 423 EQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVET 466 (720)
Q Consensus 423 e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~ 466 (720)
+.+-...-.++.+.+..+.++.+....+..|...|+.+.++...
T Consensus 44 ~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~ 87 (150)
T PF07200_consen 44 EELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDE 87 (150)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444555555555555555555555544444333
No 442
>smart00150 SPEC Spectrin repeats.
Probab=25.68 E-value=4e+02 Score=22.34 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 383 ITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENE 437 (720)
Q Consensus 383 ~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~ 437 (720)
.+...+..+.++.++......++.+...-+.++.....+...++..+..|...-+
T Consensus 33 ~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~ 87 (101)
T smart00150 33 VEALLKKHEALEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEELNERWE 87 (101)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 3344445566677777777777776666555555533333334444444443333
No 443
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=25.55 E-value=5.1e+02 Score=29.69 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy5718 424 QLQGEMTRLTQENESAKEEVKEVLQA 449 (720)
Q Consensus 424 ~lq~el~~lq~e~~~~keevke~~qa 449 (720)
++......+.++....+++..++...
T Consensus 379 ~l~~~~~~l~~~~~~l~~~~~~l~~~ 404 (451)
T PF03961_consen 379 KLKEKKKELKEELKELKEELKELKEE 404 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444433333
No 444
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=25.43 E-value=8.3e+02 Score=25.91 Aligned_cols=145 Identities=16% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh
Q psy5718 381 KLITTARRDYEQLQGEMTRLTQENESAKEEV---KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNY 457 (720)
Q Consensus 381 k~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~---eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~ 457 (720)
.....+..+..++..+.........++...+ -..+..+.+.|++.-.+.-..+...+.++....----.++-+..++
T Consensus 93 ~v~~~l~~~~~~~k~~rK~~~~~~~k~qk~~~~~~~~lekaKk~Y~~acke~E~A~~~~~ka~~d~~~sk~~~eK~k~~~ 172 (253)
T cd07676 93 QIIVELTRYVQELKQERKSHFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQA 172 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHH
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhhhhc
Q psy5718 458 DQKSQEVETKNKEFETLTEELTLKQ--TTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIG 525 (720)
Q Consensus 458 d~~~~e~e~~~~e~~~l~~el~~~~--~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~~~~ 525 (720)
..+.++++.-..+...--...+..+ -...++-.=++.+|++....-.++.++|...--=...++.+|+
T Consensus 173 ~~~~~~~e~aKn~Y~~~l~~~N~~q~~~Y~e~mp~vfd~lQ~lee~Ri~~l~e~l~~~~~~e~~~~~~i~ 242 (253)
T cd07676 173 QIRHQMAEDSKAEYSSYLQKFNKEQHEHYYTHIPNIFQKIQEMEERRIGRVGESMKTYAEVDRQVIPIIG 242 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
No 445
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=25.06 E-value=6.3e+02 Score=25.00 Aligned_cols=59 Identities=15% Similarity=0.318 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy5718 423 EQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLK 481 (720)
Q Consensus 423 e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~ 481 (720)
....+++.+......--+.-..+....|+.|..+|..--..++..+.++--+..+..+-
T Consensus 54 ~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qe 112 (157)
T COG3352 54 TDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQE 112 (157)
T ss_pred HHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHH
Confidence 34444455554444445555555555566666666666666666666666666665443
No 446
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=25.02 E-value=3.6e+02 Score=25.90 Aligned_cols=59 Identities=15% Similarity=0.266 Sum_probs=20.6
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5718 451 EELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEM 509 (720)
Q Consensus 451 eel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~ 509 (720)
++|........++++..+..+..+.+.+..+.....++...++.++.-....-.|+-.+
T Consensus 33 ~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v 91 (141)
T PF13874_consen 33 EDLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRV 91 (141)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444444444444444444444444444443
No 447
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=25.01 E-value=1.6e+03 Score=29.17 Aligned_cols=42 Identities=24% Similarity=0.335 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5718 466 TKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEM 509 (720)
Q Consensus 466 ~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~ 509 (720)
+...++-+++.+ -...+...++.+++.|++..+.+|.+-+|.
T Consensus 200 ~~~~~L~~~q~d--l~~~~~~~l~~~~~~Lq~~in~kR~~~se~ 241 (1109)
T PRK10929 200 NNRQELARLRSE--LAKKRSQQLDAYLQALRNQLNSQRQREAER 241 (1109)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444433 456688888999999999999888777764
No 448
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=24.96 E-value=5.4e+02 Score=23.53 Aligned_cols=29 Identities=31% Similarity=0.496 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy5718 424 QLQGEMTRLTQENESAKEEVKEVLQALEE 452 (720)
Q Consensus 424 ~lq~el~~lq~e~~~~keevke~~qalee 452 (720)
.+|.++..+.........+..|....+++
T Consensus 14 ~~q~~~~~l~~q~~~le~~~~E~~~v~~e 42 (110)
T TIGR02338 14 QLQQQLQAVATQKQQVEAQLKEAEKALEE 42 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333343333333333344443333333
No 449
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=24.90 E-value=3.7e+02 Score=22.76 Aligned_cols=39 Identities=23% Similarity=0.390 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhh
Q psy5718 420 RDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKS 461 (720)
Q Consensus 420 ~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~ 461 (720)
.+++.+|..+.+||.+...+|-++.++ .|.|-++|.+.-
T Consensus 6 s~l~eiqkKvrkLqsrAg~akm~LhDL---AEgLP~~wtei~ 44 (71)
T COG5420 6 SSLEEIQKKVRKLQSRAGQAKMELHDL---AEGLPVKWTEIM 44 (71)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHH---hccCCccHHHHH
Confidence 357889999999999999999998874 344667776543
No 450
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=24.85 E-value=7.5e+02 Score=25.16 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=10.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy5718 456 NYDQKSQEVETKNKEFETLTEELTLK 481 (720)
Q Consensus 456 n~d~~~~e~e~~~~e~~~l~~el~~~ 481 (720)
+.+.+...++.+...++....+|...
T Consensus 93 ~L~~~~~~L~~~e~~l~~~~~~l~~~ 118 (201)
T PF12072_consen 93 QLDRRLEQLEKREEELEKKEEELEQR 118 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444333333333
No 451
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=24.78 E-value=1.2e+02 Score=34.70 Aligned_cols=76 Identities=22% Similarity=0.283 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hhhcccccccchhHHHHHHhhhccchHhHHHHHHHhhhh
Q psy5718 611 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQE-EVSGLLVCGQTNERREQARKDLKGLEDTVTKELQTLHNL 688 (720)
Q Consensus 611 ~~~~~~~~~~~~q~~~lrdei~~k~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~el~~l~~l 688 (720)
-.++..+..+..+++.||.|.|.-.+.|-+++.. ..+ ...-+.+...+.++-....+.++.+|+.+...+..|.|+
T Consensus 33 ~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~--~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~ 109 (418)
T TIGR00414 33 IALDDERKKLLSEIEELQAKRNELSKQIGKAKGQ--KKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNI 109 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3444466778888899999999999999554433 111 122222333444445555566666667777777777776
No 452
>smart00338 BRLZ basic region leucin zipper.
Probab=24.76 E-value=3.1e+02 Score=22.47 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy5718 481 KQTTLNTTSTELQQIK 496 (720)
Q Consensus 481 ~~~~~~~l~~el~~l~ 496 (720)
+...+..|..|+..|+
T Consensus 45 L~~~~~~l~~e~~~lk 60 (65)
T smart00338 45 LKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444443
No 453
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=24.63 E-value=7e+02 Score=24.74 Aligned_cols=73 Identities=23% Similarity=0.306 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 423 EQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDM 498 (720)
Q Consensus 423 e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~ 498 (720)
+.|+....+|....+.-++.-+.....|.++.+.+++..+++. ..++.|.++..++...+.++......|.+.
T Consensus 53 ~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~---~~v~~Le~e~r~L~~~~~~~~~q~~rlee~ 125 (158)
T PF09744_consen 53 ELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQ---SQVEQLEEENRQLELKLKNLSDQSSRLEER 125 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhhhccccchh
Confidence 3445555555555555555555555556655555555554433 333333333333333333333333344433
No 454
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=24.54 E-value=9.8e+02 Score=26.41 Aligned_cols=74 Identities=23% Similarity=0.280 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHh--hhcccccccchhHHHHHHhhhccchHhHHH---HHHHhhhhHHHHHHH
Q psy5718 622 QQLDEKDEEINQQSQYAEKLKEQIMEQEE--VSGLLVCGQTNERREQARKDLKGLEDTVTK---ELQTLHNLRKLFVQD 695 (720)
Q Consensus 622 ~q~~~lrdei~~k~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~---el~~l~~l~~~~~~~ 695 (720)
.+++..++++.+-+..+..|+.+..+..+ ..--.++.....|-+.|..=+.||.+.-.| .++.|.+-.+..+-|
T Consensus 235 ~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD 313 (344)
T PF12777_consen 235 EQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVGD 313 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHHH
Confidence 33334555555555555444444322211 111122333445567777777888775443 444444444444444
No 455
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=24.42 E-value=6.5e+02 Score=24.30 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 464 VETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMS 499 (720)
Q Consensus 464 ~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~ 499 (720)
|-...+.+++-..+|.-....+++++.||...++..
T Consensus 79 vr~a~~dv~nkq~~l~AA~~~l~~~~~el~~~~~al 114 (136)
T PF11570_consen 79 VRRAQKDVQNKQNKLKAAQKELNAADEELNRIQAAL 114 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 333444444444444444555555555555555654
No 456
>KOG4466|consensus
Probab=24.33 E-value=9.4e+02 Score=26.14 Aligned_cols=51 Identities=24% Similarity=0.204 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy5718 399 RLTQENESAKEEVKELITTARRDY--------EQLQGEMTRLTQENESAKEEVKEVLQA 449 (720)
Q Consensus 399 ~~~q~~ekLkeq~eell~~~~~~~--------e~lq~el~~lq~e~~~~keevke~~qa 449 (720)
++...+.+|.+++.+.+.-++.-. .+++.++...+.|.++-+-.++|.+++
T Consensus 61 eYl~~~~~L~~~~kerl~~aely~e~~~e~v~~eYe~E~~aAk~e~E~~~~lLke~l~s 119 (291)
T KOG4466|consen 61 EYLKRVKKLDESRKERLRVAELYREYCVERVEREYECEIKAAKKEYESKKKLLKENLIS 119 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555544443332221 255667777777777777777776665
No 457
>PLN02320 seryl-tRNA synthetase
Probab=24.25 E-value=4.8e+02 Score=30.67 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy5718 423 EQLQGEMTRLTQENESAKEEVKEVLQALEELA 454 (720)
Q Consensus 423 e~lq~el~~lq~e~~~~keevke~~qaleel~ 454 (720)
+.+..+...|.++....+++++++...|.++.
T Consensus 133 ~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~ 164 (502)
T PLN02320 133 QALVEEGKNLKEGLVTLEEDLVKLTDELQLEA 164 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 458
>PLN02678 seryl-tRNA synthetase
Probab=24.24 E-value=1.2e+02 Score=34.99 Aligned_cols=76 Identities=17% Similarity=0.240 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccccccchhHHHHHHhhhccchHhHHHHHHHhhhh
Q psy5718 611 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQARKDLKGLEDTVTKELQTLHNL 688 (720)
Q Consensus 611 ~~~~~~~~~~~~q~~~lrdei~~k~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~el~~l~~l 688 (720)
-++++.+..+..+++.||-+.+.-.+.|-+++.. ..+...-..+...+.+.-.....+++-+++.+...|..|.|+
T Consensus 36 l~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~--~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi 111 (448)
T PLN02678 36 IALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIA--KEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNL 111 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4445566778888889999999999999655443 222222222233334444445555555555566666666664
No 459
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=24.23 E-value=9.1e+02 Score=25.95 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 375 ATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQ 424 (720)
Q Consensus 375 ~~~Er~k~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~ 424 (720)
+..+-..+.+........|+.++.+....+.+..+++.-|..-...+|--
T Consensus 68 ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPv 117 (258)
T PF15397_consen 68 AKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPV 117 (258)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 33444455555666666777777777777777777776666666666653
No 460
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=23.95 E-value=1.2e+03 Score=27.11 Aligned_cols=52 Identities=12% Similarity=0.209 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHH
Q psy5718 401 TQENESAKEEVKELITTARRDYEQLQGEMT--RLTQENESAKEEVKEVLQALEE 452 (720)
Q Consensus 401 ~q~~ekLkeq~eell~~~~~~~e~lq~el~--~lq~e~~~~keevke~~qalee 452 (720)
.+...+|...+...+...++-++.+...+. +...-+......+.++...|..
T Consensus 271 ~~~~~rL~~~~~~~l~~~~~~l~~l~~~l~~~~p~~~l~~~~q~ld~~~~rL~~ 324 (440)
T COG1570 271 DQLQRRLHRALRRLLDQKKQRLEHLARRLQFRSPERLLSEQQQRLDELAIRLRR 324 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444443 3333333444444444444444
No 461
>KOG4571|consensus
Probab=23.92 E-value=2.3e+02 Score=30.78 Aligned_cols=36 Identities=28% Similarity=0.368 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHH
Q psy5718 463 EVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDM-SNHQKKR 505 (720)
Q Consensus 463 e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~-~~~~~kr 505 (720)
+++++.++|+.|++. ...++.|+.-||+. .+.++||
T Consensus 256 e~~~Le~rN~~LK~q-------a~~lerEI~ylKqli~e~~~~r 292 (294)
T KOG4571|consen 256 ELEGLEKRNEELKDQ-------ASELEREIRYLKQLILEVYKKR 292 (294)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhc
Confidence 344555556655554 45567777777776 4555555
No 462
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=23.85 E-value=8.1e+02 Score=25.24 Aligned_cols=55 Identities=18% Similarity=0.199 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHH
Q psy5718 463 EVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEI 520 (720)
Q Consensus 463 e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~ 520 (720)
.+..+.+++..+.+++....-....++++.+ .+..+-+ -||+++...|...-.-.
T Consensus 101 ~~~~kd~~i~~~~~~l~~~~~r~~el~~~r~--~e~~~Ye-sRI~dLE~~L~~~n~~~ 155 (196)
T PF15272_consen 101 QMIEKDREIRTLQDELLSLELRNKELQNERE--RERIAYE-SRIADLERQLNSRNNSS 155 (196)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHH-HHHHHHHHHHHHhcccC
Confidence 3455666667777776666555555554444 2333333 48999888887544443
No 463
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=23.80 E-value=1.2e+03 Score=27.26 Aligned_cols=16 Identities=13% Similarity=0.380 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHh
Q psy5718 485 LNTTSTELQQIKDMSN 500 (720)
Q Consensus 485 ~~~l~~el~~l~~~~~ 500 (720)
..+|..++.+|++.+.
T Consensus 167 ~~~L~~qi~~L~~~n~ 182 (475)
T PRK10361 167 RHTLAHEIRNLQQLNA 182 (475)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555443
No 464
>PRK14162 heat shock protein GrpE; Provisional
Probab=23.77 E-value=4.9e+02 Score=26.69 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhHHhhh
Q psy5718 468 NKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINE-MLTNLLKDLCEIGLV 523 (720)
Q Consensus 468 ~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e-~~~~l~~dl~e~~~~ 523 (720)
..+++.+..++......+.-+.+++++++.-....+..+.. -..++++||-.+-+-
T Consensus 45 ~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpV~Dn 101 (194)
T PRK14162 45 EKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVLPAMDN 101 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 33333344444444444444445555554443333322221 234445554444433
No 465
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=23.76 E-value=1.2e+03 Score=26.98 Aligned_cols=30 Identities=13% Similarity=0.209 Sum_probs=15.1
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy5718 453 LAVNYDQKSQEVETKNKEFETLTEELTLKQ 482 (720)
Q Consensus 453 l~~n~d~~~~e~e~~~~e~~~l~~el~~~~ 482 (720)
|..+|....+.++++...-..|..++....
T Consensus 215 l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 215 LNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 444555555555555555555555544443
No 466
>PLN02678 seryl-tRNA synthetase
Probab=23.72 E-value=5.7e+02 Score=29.66 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy5718 423 EQLQGEMTRLTQENESAKEEVKEVLQALEELA 454 (720)
Q Consensus 423 e~lq~el~~lq~e~~~~keevke~~qaleel~ 454 (720)
+.+..++..|.++......+++++...+.++.
T Consensus 74 ~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~ 105 (448)
T PLN02678 74 TELIAETKELKKEITEKEAEVQEAKAALDAKL 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555443
No 467
>KOG2896|consensus
Probab=23.64 E-value=1.1e+03 Score=26.66 Aligned_cols=75 Identities=13% Similarity=0.226 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy5718 377 MERVKLITTARRDYEQLQGEMTRLTQENESAK-EEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE 451 (720)
Q Consensus 377 ~Er~k~~ee~~~l~~ql~~Ei~~~~q~~ekLk-eq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qale 451 (720)
.++....+...++.+.+..++...+.+..++. +++..++--.+....+..+.+++....+++.+.-+++..+.+.
T Consensus 76 ~~~~~~~q~~~~q~~~~~~~~~~v~~ek~rl~~~~i~~~iL~~~~~l~~~~Ealsk~~~~~~k~~~kL~~kr~q~~ 151 (377)
T KOG2896|consen 76 LERLHVEQCLSAQVQSMRVEMKEVSEEKLRLQIECIQLKILVLESNLQRQIEALSKKRAHLEKTKQKLEDKRQQFN 151 (377)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666667777777777777 3346666666777777777777777777777777777666655
No 468
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=23.60 E-value=5.3e+02 Score=23.02 Aligned_cols=64 Identities=20% Similarity=0.401 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy5718 389 DYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEL 453 (720)
Q Consensus 389 l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel 453 (720)
+.+.+...|..+...+..|......++.....+ ..+..++..+..+....-.+++..+..|+..
T Consensus 9 ~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~ 72 (117)
T smart00503 9 KVEEIRANIQKISQNVAELQKLHEELLTPPDAD-KELREKLERLIDDIKRLAKEIRAKLKELEKE 72 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455566666666667666666666554421 3455566666666655555555555555543
No 469
>PRK14148 heat shock protein GrpE; Provisional
Probab=23.55 E-value=5.5e+02 Score=26.35 Aligned_cols=59 Identities=10% Similarity=0.143 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhHHhhhh
Q psy5718 466 TKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINE-MLTNLLKDLCEIGLVI 524 (720)
Q Consensus 466 ~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e-~~~~l~~dl~e~~~~~ 524 (720)
.+..+++.+.+++......+.-+.+++++++.-....+..+.. -..++++||=.+-+-+
T Consensus 44 ~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~Dnl 103 (195)
T PRK14148 44 RAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDSI 103 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 3333444444444444444555555555555554444443332 2345555555544433
No 470
>PRK11677 hypothetical protein; Provisional
Probab=23.36 E-value=4.6e+02 Score=25.35 Aligned_cols=50 Identities=26% Similarity=0.312 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 382 LITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTR 431 (720)
Q Consensus 382 ~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~ 431 (720)
-...+.++.++.+.+++++.+++...=.+-.+|+.....+|.++.+-|..
T Consensus 30 ~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~HlA~ 79 (134)
T PRK11677 30 QQQALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQLYQHMAK 79 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666788888888777777788888888888877776654
No 471
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=23.32 E-value=8.4e+02 Score=25.21 Aligned_cols=8 Identities=0% Similarity=-0.230 Sum_probs=4.0
Q ss_pred ccccccch
Q psy5718 227 VARLYISK 234 (720)
Q Consensus 227 hIPYRdSK 234 (720)
..||=|+-
T Consensus 11 aLPYiD~~ 18 (221)
T PF05700_consen 11 ALPYIDPD 18 (221)
T ss_pred CCCCCCCC
Confidence 34555543
No 472
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=23.30 E-value=2.3e+02 Score=32.94 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhhHHH
Q psy5718 425 LQGEMTRLTQENESAKEE 442 (720)
Q Consensus 425 lq~el~~lq~e~~~~kee 442 (720)
++.++..+..|+..+++.
T Consensus 102 le~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 102 DQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444443333
No 473
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=23.24 E-value=4.9e+02 Score=22.43 Aligned_cols=63 Identities=16% Similarity=0.397 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy5718 389 DYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 452 (720)
Q Consensus 389 l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qalee 452 (720)
....+...|+.+...+++|...-...+.....+ ..+..++..|..+....-..++.-++.|+.
T Consensus 8 ~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d-~~~~~el~~l~~~i~~~~~~~~~~lk~l~~ 70 (103)
T PF00804_consen 8 EVQEIREDIDKIKEKLNELRKLHKKILSSPDQD-SELKRELDELTDEIKQLFQKIKKRLKQLSK 70 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666655555555555433 455556666655555555555555554444
No 474
>PRK14163 heat shock protein GrpE; Provisional
Probab=23.22 E-value=4.6e+02 Score=27.35 Aligned_cols=61 Identities=15% Similarity=0.232 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhHHhhhh
Q psy5718 464 VETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINE-MLTNLLKDLCEIGLVI 524 (720)
Q Consensus 464 ~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e-~~~~l~~dl~e~~~~~ 524 (720)
.+.+..+++.+..++..+...+.-+.+|+++++.-..-.+..+.. -..++++||=.+-+-+
T Consensus 42 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDnL 103 (214)
T PRK14163 42 TAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDV 103 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHH
Confidence 334444455555555555555555556666665554444443332 2344555555444433
No 475
>KOG3809|consensus
Probab=23.12 E-value=1.2e+03 Score=26.98 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5718 486 NTTSTELQQIKDMSNHQKKRINEMLTNLLK 515 (720)
Q Consensus 486 ~~l~~el~~l~~~~~~~~kr~~e~~~~l~~ 515 (720)
.-|+.+|++|+..++.++..|-+.=.++|+
T Consensus 542 epL~~~la~lq~~I~d~~e~i~~~r~~IL~ 571 (583)
T KOG3809|consen 542 EPLYNILANLQKEINDTKEEISKARGRILN 571 (583)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555555555555444444443
No 476
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=22.98 E-value=8e+02 Score=24.86 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5718 285 KDLKGLEDTVTKELQTLHNLRKLFVQDLQ 313 (720)
Q Consensus 285 ~~Lk~ei~~Lk~EL~~l~nlrk~~~qdl~ 313 (720)
..|...+..+..-+..+.+.++.+...+.
T Consensus 34 ~~le~~Lk~l~~~~~~l~~~~~~l~~~~~ 62 (236)
T PF09325_consen 34 DKLEEQLKKLYKSLERLVKRRQELASALA 62 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666656666555555555554
No 477
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=22.92 E-value=6.9e+02 Score=28.50 Aligned_cols=11 Identities=18% Similarity=0.290 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q psy5718 394 QGEMTRLTQEN 404 (720)
Q Consensus 394 ~~Ei~~~~q~~ 404 (720)
+.+.|..+..+
T Consensus 50 ~~erN~~sk~i 60 (418)
T TIGR00414 50 QAKRNELSKQI 60 (418)
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 478
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=22.79 E-value=9.9e+02 Score=25.85 Aligned_cols=131 Identities=20% Similarity=0.241 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5718 422 YEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNH 501 (720)
Q Consensus 422 ~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~ 501 (720)
|..+-.-+++|..-.+.++.|.+++-++=...+....+.+|.+..=-.|+-.++.|-..+..+++-..++|+.-=.
T Consensus 85 y~dypaiisklsaavenak~e~~~id~~na~i~k~lAeeNqKIq~gi~EL~Kl~~e~~~l~kTi~~TIa~lEKKFq---- 160 (353)
T PF01540_consen 85 YGDYPAIISKLSAAVENAKNEKKAIDDKNAQIDKKLAEENQKIQNGIEELKKLSNEAFELSKTINKTIAKLEKKFQ---- 160 (353)
T ss_pred cCCcHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC----
Confidence 4455566777777777777777776665444444434444444443444444444444444444444445442111
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhcCCCcccccCCccccchhhhHHHH---------HHHhhhhhhHhhHhh
Q psy5718 502 QKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVAR---------LYISKMKWRNGETVK 563 (720)
Q Consensus 502 ~~kr~~e~~~~l~~dl~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~---------~~~~~~~~~~~~~~~ 563 (720)
.-+...+=+.+..+||+.=+..|..= -.. .+- -+||+++- +++..||+|--.+..
T Consensus 161 I~~~FKekLesfa~~L~~KS~eI~tF-ttv-~s~-----k~eF~L~ELESFKEinTtwfNgmksEWA~V~~ 224 (353)
T PF01540_consen 161 IDKDFKEKLESFADLLNKKSREIDTF-TTV-QST-----KEEFVLNELESFKEINTTWFNGMKSEWARVQE 224 (353)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH-Hhh-ccc-----hhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 11234555777888888877777543 111 211 34555543 467789888765443
No 479
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=22.70 E-value=2.7e+02 Score=32.38 Aligned_cols=17 Identities=6% Similarity=0.171 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5718 482 QTTLNTTSTELQQIKDM 498 (720)
Q Consensus 482 ~~~~~~l~~el~~l~~~ 498 (720)
+++++.+++|+..|++.
T Consensus 103 e~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 103 QRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 480
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=22.69 E-value=9.7e+02 Score=25.70 Aligned_cols=73 Identities=15% Similarity=0.185 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q psy5718 398 TRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKE 470 (720)
Q Consensus 398 ~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e 470 (720)
++.++..+-....+-..+......+-..-..+..|+.+...+-..++.....|.....+.-..+-++-.+.+.
T Consensus 38 ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rk 110 (291)
T PF10475_consen 38 EKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQRK 110 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333444444444444455555555566666677777777777777776666666555555544444444333
No 481
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=22.59 E-value=6.1e+02 Score=29.02 Aligned_cols=29 Identities=31% Similarity=0.421 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy5718 424 QLQGEMTRLTQENESAKEEVKEVLQALEE 452 (720)
Q Consensus 424 ~lq~el~~lq~e~~~~keevke~~qalee 452 (720)
.+..+...|.++...++++++++...+.+
T Consensus 70 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 482
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=22.29 E-value=8.9e+02 Score=25.15 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=16.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q psy5718 434 QENESAKEEVKEVLQALEELAVNYDQKSQEVET 466 (720)
Q Consensus 434 ~e~~~~keevke~~qaleel~~n~d~~~~e~e~ 466 (720)
...+.+..........++....+|+..-++++.
T Consensus 106 ~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~ 138 (239)
T cd07647 106 DIMKRSQKNKKELYKKTMKAKKSYEQKCREKDK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444455555555566665555554
No 483
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=22.22 E-value=3.6e+02 Score=32.77 Aligned_cols=46 Identities=22% Similarity=0.430 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy5718 401 TQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEV 446 (720)
Q Consensus 401 ~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~ 446 (720)
.+++..++++.+++..+...+.++|+.++++|++|.+-+.-|++-.
T Consensus 14 ~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~ 59 (654)
T PF09798_consen 14 QKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSL 59 (654)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555566666667777788888888888777777666653
No 484
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=22.16 E-value=1.1e+03 Score=25.95 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy5718 484 TLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDL 517 (720)
Q Consensus 484 ~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl 517 (720)
.+.++-.|-..+.+-....++.+.- |.+|++-|
T Consensus 273 ~l~~m~eer~~~~~~~~~~~~k~~k-Le~LcRaL 305 (309)
T PF09728_consen 273 ALIEMAEERQKLEKELEKLKKKIEK-LEKLCRAL 305 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3333333433333334444444332 44444433
No 485
>PRK14154 heat shock protein GrpE; Provisional
Probab=22.15 E-value=5.1e+02 Score=26.94 Aligned_cols=55 Identities=13% Similarity=0.218 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhHHhhhh
Q psy5718 470 EFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINE-MLTNLLKDLCEIGLVI 524 (720)
Q Consensus 470 e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e-~~~~l~~dl~e~~~~~ 524 (720)
+++.+..++......+.-+.+++++++.-..-.+..+.. -..++++||=++-+-+
T Consensus 60 el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnL 115 (208)
T PRK14154 60 QLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSL 115 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 333344444444444445555555555544444433332 2334555554444433
No 486
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=22.00 E-value=3.9e+02 Score=22.17 Aligned_cols=60 Identities=28% Similarity=0.427 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 427 GEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQ--EVETKNKEFETLTEELTLKQTTLNTT 488 (720)
Q Consensus 427 ~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~--e~e~~~~e~~~l~~el~~~~~~~~~l 488 (720)
.++.+|+-+.+....++.-+...|-+ .+|-.+.= .|+..+..++.+..++..+...+..|
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~kL~n--~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEKKLSN--ENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCS--TTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC--ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444444444443333331 34444332 35555666666666655555555443
No 487
>PRK14147 heat shock protein GrpE; Provisional
Probab=21.90 E-value=4e+02 Score=26.71 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHhHHhhhh
Q psy5718 462 QEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEM-LTNLLKDLCEIGLVI 524 (720)
Q Consensus 462 ~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~-~~~l~~dl~e~~~~~ 524 (720)
.+.+.+..+++.|..++..+...+.-+.+++++++.-..-.+.++... ..++++||=++-+-+
T Consensus 18 ~~~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~~~~~~~lLpv~Dnl 81 (172)
T PRK14147 18 PETDPLKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFANEKLLGELLPVFDSL 81 (172)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 334445556666666666666666677777777776665555554432 345666666555444
No 488
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=21.87 E-value=59 Score=30.23 Aligned_cols=104 Identities=17% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH--
Q psy5718 403 ENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTL-- 480 (720)
Q Consensus 403 ~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~-- 480 (720)
+|+...+.+..-+....+....|+.++..|+.++...+.....+..+|......-++-....+.....+-.-...-+.
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~~~A~~eA~~i~~~A~~~a~~i 101 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIKAEAEEEAEEIIEEAQKEAEEI 101 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---HHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy5718 481 ---KQTTLNTTSTELQQIKDMSNHQKKRI 506 (720)
Q Consensus 481 ---~~~~~~~l~~el~~l~~~~~~~~kr~ 506 (720)
-......+..+++.|+...+..+.+.
T Consensus 102 ~~~A~~~~~~l~~~~~~lk~~~~~~~~~~ 130 (131)
T PF05103_consen 102 IEEARAEAERLREEIEELKRQAEQFRAQF 130 (131)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 489
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=21.86 E-value=3.8e+02 Score=28.24 Aligned_cols=64 Identities=19% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy5718 384 TTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQA 449 (720)
Q Consensus 384 ee~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qa 449 (720)
+..-..|..++..++......++|.+-++ .+..-.+.-+++.+|++++.+.+.++...+.+...
T Consensus 128 ~DvT~~y~D~~arl~~l~~~~~rl~~ll~--ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 128 EDVTEQYVDLEARLKNLEAEEERLLELLE--KAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 490
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=21.85 E-value=1.1e+03 Score=26.09 Aligned_cols=206 Identities=17% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccccccccccCCCCchHHHhHHHHHhhhhHHHHHHHHHHHhh
Q psy5718 279 RREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRD 358 (720)
Q Consensus 279 ~~~~~~~~Lk~ei~~Lk~EL~~l~nlrk~~~qdl~~r~g~~~~~~e~~~~~~~~~~~qki~~le~~Le~L~~~~~qLv~d 358 (720)
....+...++..++.|+..-+.+..-...+..........+++....... |...|.......+.|..+
T Consensus 20 ~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~------------La~lL~~sre~Nk~L~~E 87 (319)
T PF09789_consen 20 KCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKN------------LAQLLSESREQNKKLKEE 87 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhh------------HHHHHHHHHHHHHHHHHH
Q ss_pred hhcccccchhHHHhhhhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 359 NADLRCELPKLEKRLRATMERVKLITTARRDYEQLQG------EMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRL 432 (720)
Q Consensus 359 n~~l~~elp~~~~~~~~~~Er~k~~ee~~~l~~ql~~------Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~l 432 (720)
...++.. +.....-.|++-+....++-.+. ..++...++..| +.+.+-.....+|+..+-.|...+
T Consensus 88 v~~Lrqk-------l~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qL-Ek~~~q~~qLe~d~qs~lDEkeEl 159 (319)
T PF09789_consen 88 VEELRQK-------LNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQL-EKLREQIEQLERDLQSLLDEKEEL 159 (319)
T ss_pred HHHHHHH-------HHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy5718 433 TQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKK 504 (720)
Q Consensus 433 q~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~k 504 (720)
-.|-++-+..+.-+.+.|--+--.++.+.--|+.+--||--|.+.+.+.+.+.+.+.+-+..-|.+-..-++
T Consensus 160 ~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~k~~ 231 (319)
T PF09789_consen 160 VTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALERKRK 231 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 491
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=21.81 E-value=6.9e+02 Score=23.65 Aligned_cols=93 Identities=15% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHH-----------HHHHHHHHHHHHHHHHHHHHHH
Q psy5718 417 TARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQE-----------VETKNKEFETLTEELTLKQTTL 485 (720)
Q Consensus 417 ~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e-----------~e~~~~e~~~l~~el~~~~~~~ 485 (720)
........|..+-..-......-..=|..+...+.++|...+...-- .++...+.+.|...+.++...+
T Consensus 17 ~~~~~t~~Lk~ec~~F~~ki~~F~~iv~~~~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~lq~~I~Ek~~eL 96 (120)
T PF14931_consen 17 EKADQTQELKEECKEFVEKISEFQKIVKGFIEILDELAKRVENEKLKAIGARNLLKSEAKQREAQQQQLQALIAEKKMEL 96 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q psy5718 486 NTTSTELQQIKDMSNHQKKRINEM 509 (720)
Q Consensus 486 ~~l~~el~~l~~~~~~~~kr~~e~ 509 (720)
.-+..|++.|+.+...|..=|..+
T Consensus 97 ERl~~E~~sL~kve~eQ~~~i~~~ 120 (120)
T PF14931_consen 97 ERLRSEYESLQKVEQEQNELIQKL 120 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
No 492
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=21.63 E-value=1.9e+02 Score=27.23 Aligned_cols=95 Identities=22% Similarity=0.357 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhh
Q psy5718 382 LITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKS 461 (720)
Q Consensus 382 ~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~ 461 (720)
+..+ .+-+..|+.-++....+...++++|-+++..-..++-.+-..+.-+.+.....+..+..+...+.......+...
T Consensus 18 Fl~~-~~~~~~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~ 96 (133)
T PF06148_consen 18 FLSS-NRRYVSLEDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVESVRDELDNTQ 96 (133)
T ss_dssp ---------------------------------------------------------HHHHHHHHHHHHHHHHHS-STTH
T ss_pred HHHH-ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q psy5718 462 QEVETKNKEFETLTEE 477 (720)
Q Consensus 462 ~e~e~~~~e~~~l~~e 477 (720)
..++.+-.+...+.+.
T Consensus 97 ~~i~~~l~~~~~l~~~ 112 (133)
T PF06148_consen 97 EEIEDKLEERKELREE 112 (133)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
No 493
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=21.60 E-value=6.1e+02 Score=22.97 Aligned_cols=97 Identities=20% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH----HHHHHHhhhhhhhHHHHHHHHHHHHHH
Q psy5718 400 LTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQ----ALEELAVNYDQKSQEVETKNKEFETLT 475 (720)
Q Consensus 400 ~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~q----aleel~~n~d~~~~e~e~~~~e~~~l~ 475 (720)
+.|+++.|...+...+...-.+ ..+...++.|-.=...++.....-.. ....+--..+=.+.-+..+.++.+.|.
T Consensus 8 ~~Q~~~~l~~~~~~Ef~~I~~E-r~v~~kLneLd~Li~eA~~r~~~~~~~~~~~~~~l~P~~~i~a~l~~~~~~~~~~L~ 86 (109)
T PF03980_consen 8 HQQMIEFLEENCKKEFEEILEE-RDVVEKLNELDKLIEEAKERKNSGEREKPVWRHSLTPEEDIRAHLAPYKKKEREQLN 86 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhHhccccCCCCCCCCCChHHHHHHHhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy5718 476 EELTLKQTTLNTTSTELQQIKD 497 (720)
Q Consensus 476 ~el~~~~~~~~~l~~el~~l~~ 497 (720)
..|....+.+..|..++..+++
T Consensus 87 ~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 87 ARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
No 494
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=21.44 E-value=1.3e+02 Score=28.51 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHH
Q psy5718 421 DYEQLQGEMTRLTQENESAKEEVK 444 (720)
Q Consensus 421 ~~e~lq~el~~lq~e~~~~keevk 444 (720)
.+|+|..+|.+|+-||.++|-.|+
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~ 27 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLR 27 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
No 495
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=21.33 E-value=1.6e+02 Score=25.73 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhh
Q psy5718 429 MTRLTQENESAKEEVKEVLQALEELAVNY 457 (720)
Q Consensus 429 l~~lq~e~~~~keevke~~qaleel~~n~ 457 (720)
+..|++||..+|.+++-++..|.++..+|
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~~ 30 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKREF 30 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 496
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=21.17 E-value=1.3e+03 Score=26.46 Aligned_cols=135 Identities=16% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHH--
Q psy5718 390 YEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETK-- 467 (720)
Q Consensus 390 ~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~-- 467 (720)
...+.+|++........|...++.+.....+++.-+-+.+..-.-+.+..++.|-|+.+.--.--.|..|.-.-+|++
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~ 293 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMA 293 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhhhh
Q psy5718 468 ---NKEFETLTEELTLKQTTLNTTS-TELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVI 524 (720)
Q Consensus 468 ---~~e~~~l~~el~~~~~~~~~l~-~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~~~ 524 (720)
.....++.|-+..-++.+.-++ ..+++.-.....-.=++..+|..++.=|=.+-.++
T Consensus 294 Yqs~eRaRdi~E~~Es~qtRisklE~~~~Qq~~q~e~~~n~~~r~~l~k~inllL~l~~vl 354 (395)
T PF10267_consen 294 YQSYERARDIWEVMESCQTRISKLEQQQQQQVVQLEGTENSRARALLGKLINLLLTLLTVL 354 (395)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHHHHHH
No 497
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=21.01 E-value=7.1e+02 Score=26.37 Aligned_cols=70 Identities=17% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q psy5718 429 MTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLN---TTSTELQQIKDM 498 (720)
Q Consensus 429 l~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~---~l~~el~~l~~~ 498 (720)
+..+..-......-+..+-....+....+-..-....+..+|++.|..|+.++...+. ++..|.++|++.
T Consensus 36 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~l 108 (276)
T PRK13922 36 LSPVRQVVGDVVSPVQRVVNAPREFVSGVFESLASLFDLREENEELKKELLELESRLQELEQLEAENARLREL 108 (276)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=20.99 E-value=2e+02 Score=27.91 Aligned_cols=64 Identities=22% Similarity=0.317 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhHHhhhh
Q psy5718 461 SQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINE-MLTNLLKDLCEIGLVI 524 (720)
Q Consensus 461 ~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e-~~~~l~~dl~e~~~~~ 524 (720)
..+++....+++.+..++.++...+..+.+++++++.-..-.+.++.. .+.++++||-++-+.+
T Consensus 10 ~~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~D~l 74 (165)
T PF01025_consen 10 DEEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVLDNL 74 (165)
T ss_dssp HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>KOG4603|consensus
Probab=20.85 E-value=7.3e+02 Score=25.12 Aligned_cols=68 Identities=19% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718 418 ARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTST 490 (720)
Q Consensus 418 ~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~ 490 (720)
...++..+-.++.+|++-..+.......|...+.+| ++.--+++.+.+++.|..++......+..+.+
T Consensus 77 ~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L-----~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 77 SDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKEL-----SSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=20.81 E-value=7.5e+02 Score=23.70 Aligned_cols=104 Identities=9% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q psy5718 392 QLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEF 471 (720)
Q Consensus 392 ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~ 471 (720)
++.++..+..+..+++...+++...........-=..-..+......+.+.|.++-+.|.+=....--++.++.++..+.
T Consensus 37 g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s 116 (142)
T PF04048_consen 37 GRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSLLGCRREELKELWQRS 116 (142)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHH
Q psy5718 472 ETLTEELTLKQ--TTLNTTSTELQQI 495 (720)
Q Consensus 472 ~~l~~el~~~~--~~~~~l~~el~~l 495 (720)
..+.+-+.-+. ..+.++-.++++|
T Consensus 117 ~~~~~mi~iL~~Ie~l~~vP~kie~l 142 (142)
T PF04048_consen 117 QEYKEMIEILDQIEELRQVPDKIESL 142 (142)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhcC
Done!