RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5718
(720 letters)
>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain
(KHC) or KIF5-like subgroup. Members of this group have
been associated with organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 325
Score = 189 bits (481), Expect = 4e-54
Identities = 71/96 (73%), Positives = 78/96 (81%)
Query: 122 GATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGK 181
G TERFV PEEV EVI EGK+NR +A TNMNE SSRSHS+FLI +KQEN+E K GK
Sbjct: 166 GLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGK 225
Query: 182 LYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
L+LVDLAGSEKVSKTGAEG L+EAK INKSLSA G
Sbjct: 226 LFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALG 261
Score = 88.1 bits (219), Expect = 7e-19
Identities = 39/69 (56%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 14 EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGE-ENGLSLGGKFYLFDKVFKPNATQEKV 72
E +I+VVCRFRPLN EE GSK IVKFP S GK + FD+VF PN TQE V
Sbjct: 1 ECNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSDDGKTFSFDRVFPPNTTQEDV 60
Query: 73 YDEAAKSIV 81
Y+ AK IV
Sbjct: 61 YNFVAKPIV 69
>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type), in some its is found in the middle (M-type),
or C-terminal (C-type). N-type and M-type kinesins are
(+) end-directed motors, while C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 328
Score = 139 bits (352), Expect = 2e-36
Identities = 59/122 (48%), Positives = 75/122 (61%), Gaps = 3/122 (2%)
Query: 96 DRLRSDHQLKASTMCEHSLMHLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEH 155
D L + K ++ E + V G TE VG E+ ++++G NR A T MNE
Sbjct: 143 DLLSPEPPSKPLSLREDPKGGVYV-KGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNER 201
Query: 156 SSRSHSVFLINVKQENLENEKKL--SGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSL 213
SSRSH++F I+V+Q N N+ + S KL LVDLAGSE+ KTGAEG L EAKNINKSL
Sbjct: 202 SSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSL 261
Query: 214 SA 215
SA
Sbjct: 262 SA 263
Score = 54.5 bits (132), Expect = 6e-08
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGE------ENGLSLGGKFYLFDKVFKPNATQ 69
+IRVV R RPLN E + + ++G G K + FD VF PN+TQ
Sbjct: 1 NIRVVVRIRPLN-GRESKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQ 59
Query: 70 EKVYDEAAKSIV 81
E VY+ AK +V
Sbjct: 60 EDVYETTAKPLV 71
>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain. ATPase.
Microtubule-dependent molecular motors that play
important roles in intracellular transport of organelles
and in cell division.
Length = 335
Score = 139 bits (352), Expect = 3e-36
Identities = 56/109 (51%), Positives = 69/109 (63%), Gaps = 3/109 (2%)
Query: 109 MCEHSLMHLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVK 168
+ E + V G TE V EEV+ ++E+G NR +A T MNE SSRSH+VF I V+
Sbjct: 154 IREDEKGGVYV-KGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVE 212
Query: 169 QE--NLENEKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
Q+ N + + KL LVDLAGSE+ KTGAEG L EA NINKSLSA
Sbjct: 213 QKIKNSSSGSGKASKLNLVDLAGSERAKKTGAEGDRLKEAGNINKSLSA 261
Score = 66.8 bits (164), Expect = 9e-12
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEE------NGLSLGGKFYLFDKVFKPNATQ 69
+IRVV R RPLN E+ S +V FP + G K + FDKVF A+Q
Sbjct: 1 NIRVVVRVRPLNKREKSRKSPSVVPFPDKVGKTLTVRSPKNRQGEKKFTFDKVFDATASQ 60
Query: 70 EKVYDEAAKSIV 81
E V++E A +V
Sbjct: 61 EDVFEETAAPLV 72
>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain.
Length = 326
Score = 138 bits (351), Expect = 3e-36
Identities = 61/122 (50%), Positives = 74/122 (60%), Gaps = 3/122 (2%)
Query: 96 DRLRSDHQLKASTMCEHSLMHLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEH 155
D L + K + E + V G TE V EEV E++E G NR +A TNMNE
Sbjct: 140 DLLSPSSKKKKLRIREDPKKGVYV-KGLTEVEVTSAEEVLELLELGNKNRTVASTNMNEE 198
Query: 156 SSRSHSVFLINVKQENLE-NEKKLSGKLYLVDLAGSEKVSKTG-AEGTVLDEAKNINKSL 213
SSRSH++F I V+Q N + + +GKL LVDLAGSE+ SKTG A G L EA NINKSL
Sbjct: 199 SSRSHAIFTITVEQRNRDTDGSVKTGKLNLVDLAGSERASKTGAAGGRRLKEAANINKSL 258
Query: 214 SA 215
SA
Sbjct: 259 SA 260
Score = 53.4 bits (129), Expect = 2e-07
Identities = 28/67 (41%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 22 RFRPLNHSEEKAGSKFIVKFPSGGEENGLS------LGGKFYLFDKVFKPNATQEKVYDE 75
R RPLN E+ GS IV E+ S K + FD+VF P ATQE VY+E
Sbjct: 1 RVRPLNEREKSRGSSDIVNVDETDSEDKESVVITNKGREKTFTFDRVFDPEATQEFVYEE 60
Query: 76 AAKSIVS 82
AK +V
Sbjct: 61 TAKPLVE 67
>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain,
KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a
spindle motor protein necessary for chromosome
segregation in meiosis. KIFC2/KIFC3-like kinesins have
been implicated in motility of the Golgi apparatus as
well as dentritic and axonal transport in neurons. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In this subgroup the motor domain is found at
the C-terminus (C-type). C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 329
Score = 133 bits (337), Expect = 2e-34
Identities = 51/95 (53%), Positives = 65/95 (68%)
Query: 121 PGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSG 180
TE V PEEV ++ G NR +A TNMNEHSSRSH+VF + ++ NL+ ++ G
Sbjct: 167 TNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRG 226
Query: 181 KLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
KL LVDLAGSE++ K+GA G L EA+ INKSLSA
Sbjct: 227 KLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSA 261
Score = 56.8 bits (138), Expect = 1e-08
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEE----NGLSLGGKFYLFDKVFKPNATQEK 71
+IRV CR RPL SE S ++ FP + + K + FD+VF P+A+QE
Sbjct: 3 NIRVFCRVRPLLPSESTEYSS-VISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQED 61
Query: 72 VYDEAAKSIVSV 83
V++E + + S
Sbjct: 62 VFEEVSPLVQSA 73
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain. These
ATPases belong to the P-loop NTPase family and provide
the driving force in myosin and kinesin mediated
processes.
Length = 186
Score = 114 bits (288), Expect = 2e-29
Identities = 46/90 (51%), Positives = 60/90 (66%), Gaps = 3/90 (3%)
Query: 132 EEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLE---NEKKLSGKLYLVDLA 188
+V +++++G ANR A T MNEHSSRSHSVF I+ +N E+ GK+ LVDLA
Sbjct: 56 TDVIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATEQPKVGKINLVDLA 115
Query: 189 GSEKVSKTGAEGTVLDEAKNINKSLSADGA 218
GSE++ +GAEG+ L E NINKSLS G
Sbjct: 116 GSERIDFSGAEGSRLTETANINKSLSTLGN 145
>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily.
Members of this group seem to perform a variety of
functions, and have been implicated in neuronal
organelle transport and chromosome segregation during
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 341
Score = 103 bits (258), Expect = 7e-24
Identities = 42/110 (38%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKK 177
I+ G TE V +EV +E+G +R A T MN SSRSH++F I ++Q
Sbjct: 165 IIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIA 224
Query: 178 LSG----------KLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
K + VDLAGSE++ KTGA G L E +IN L A G
Sbjct: 225 PMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALG 274
Score = 46.1 bits (110), Expect = 4e-05
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGG-KFYLFDKVFKPNATQEKVYD 74
S+RV R RPL E G + V G E +++G K + FD VF P+ +QE+VY+
Sbjct: 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPG--EPQVTVGTDKSFTFDYVFDPSTSQEEVYN 59
Query: 75 EAAKSIV 81
+V
Sbjct: 60 TCVAPLV 66
>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like
proteins. Subgroup of kinesins, which form heterotrimers
composed of 2 kinesins and one non-motor accessory
subunit. Kinesins II play important roles in ciliary
transport, and have been implicated in neuronal
transport, melanosome transport, the secretory pathway,
and mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In this group the motor
domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 333
Score = 99.0 bits (247), Expect = 2e-22
Identities = 45/89 (50%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 132 EEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLS---GKLYLVDLA 188
EE+ +++ G NR + TNMNE SSRSHS+F I ++ + + GKL LVDLA
Sbjct: 181 EEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDLA 240
Query: 189 GSEKVSKTGAEGTVLDEAKNINKSLSADG 217
GSE+ SKTGA G L EA IN SLSA G
Sbjct: 241 GSERQSKTGATGDRLKEATKINLSLSALG 269
Score = 49.3 bits (118), Expect = 3e-06
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 15 DSIRVVCRFRPLNHSEEKAGSKFIVKF-PSGGE------ENGLSLGGKFYLFDKVFKPNA 67
++++VV R RPLN E+ G+ IV + G+ + K + FD V+ PN+
Sbjct: 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNS 60
Query: 68 TQEKVYDEAAKSIVS 82
TQE VY+E A+ +V
Sbjct: 61 TQEDVYNETARPLVD 75
>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole
proteins, participate in spindle assembly and chromosome
segregation during cell division. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type), N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 352
Score = 99.3 bits (248), Expect = 2e-22
Identities = 44/99 (44%), Positives = 60/99 (60%), Gaps = 3/99 (3%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINV--KQENLENE 175
+V G E V E +++E+G A R A T MN+ SSRSHS+F I + K+ + E
Sbjct: 178 VVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGE 237
Query: 176 KKLS-GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSL 213
+ + GKL LVDLAGSE + ++GAE EA NIN+SL
Sbjct: 238 ELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSL 276
Score = 55.0 bits (133), Expect = 6e-08
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 14 EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGG------KFYLFDKVFKPNA 67
E +I+VV R RP N E K S +V+ +E +S GG K Y FDKVF P A
Sbjct: 1 ESNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEA 60
Query: 68 TQEKVYDEAAKSIV 81
Q +VY + I+
Sbjct: 61 DQIEVYSQVVSPIL 74
>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like
proteins. KIF1A (Unc104) transports synaptic vesicles to
the nerve terminal, KIF1B has been implicated in
transport of mitochondria. Both proteins are expressed
in neurons. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
In contrast to the majority of dimeric kinesins, most
KIF1A/Unc104 kinesins are monomeric motors. A
lysine-rich loop in KIF1A binds to the negatively
charged C-terminus of tubulin and compensates for the
lack of a second motor domain, allowing KIF1A to move
processively.
Length = 356
Score = 96.6 bits (241), Expect = 2e-21
Identities = 46/91 (50%), Positives = 60/91 (65%), Gaps = 4/91 (4%)
Query: 128 VGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSG----KLY 183
V E++ ++EEG +R A TNMN+ SSRSH+VF I + Q+ L+ E L+ K+
Sbjct: 185 VTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKVSKIS 244
Query: 184 LVDLAGSEKVSKTGAEGTVLDEAKNINKSLS 214
LVDLAGSE+ S TGAEG L E NINKSL+
Sbjct: 245 LVDLAGSERASSTGAEGDRLKEGSNINKSLT 275
Score = 41.1 bits (97), Expect = 0.002
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 14/85 (16%)
Query: 15 DSIRVVCRFRPLNHSEEKAGSKFIVKFPS-------GGEENGLSLGGKFYLFDKVF---- 63
+++V R RP N E+ GSK IV+ P + K + FD +
Sbjct: 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHD 60
Query: 64 --KPN-ATQEKVYDEAAKSIVSVQF 85
P+ A+QE V+++ + ++ F
Sbjct: 61 SEDPHYASQEDVFEDLGRELLDHAF 85
>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like
subgroup, involved in chromosome movement and/or spindle
elongation during mitosis. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type). N-type kinesins are (+) end-directed motors,
i.e. they transport cargo towards the (+) end of the
microtubule. Kinesin motor domains hydrolyze ATP at a
rate of about 80 per second, and move along the
microtubule at a speed of about 6400 Angstroms per
second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 321
Score = 94.7 bits (236), Expect = 3e-21
Identities = 39/95 (41%), Positives = 56/95 (58%), Gaps = 4/95 (4%)
Query: 122 GATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINV---KQENLENEKKL 178
G TE V PE + ++I G+ NRH+ T+ NE SSRSH++F + + ++ + E+
Sbjct: 159 GLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVR 218
Query: 179 SGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSL 213
L L+DLAGSE+ S+TG G E INKSL
Sbjct: 219 VSTLNLIDLAGSERASQTG-AGERRKEGSFINKSL 252
Score = 43.4 bits (103), Expect = 3e-04
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL----GGKFYLFDKVFKPNATQEK 71
I+V R RPLN E S +N +SL G+ + FD+VF +T +
Sbjct: 1 KIKVSVRVRPLNPRESDNEQVAW----SIDNDNTISLEESTPGQSFTFDRVFGGESTNRE 56
Query: 72 VYDEAAKSIV 81
VY+ AK +V
Sbjct: 57 VYERIAKPVV 66
>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup.
The yeast kinesin KIP3 plays a role in positioning the
mitotic spindle. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 338
Score = 92.7 bits (231), Expect = 2e-20
Identities = 45/103 (43%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLE---N 174
IV G TE EE+ E++ +G NR T N SSRSH+V I V+Q++ N
Sbjct: 170 IVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASIN 229
Query: 175 EKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
++ GKL L+DLAGSE+ S T G L E NIN+SL A G
Sbjct: 230 QQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALG 272
Score = 51.1 bits (123), Expect = 8e-07
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 14/81 (17%)
Query: 16 SIRVVCRFRPLNHSEEKAGSKFIVKF---------PSGGEENGLSLGGKF-----YLFDK 61
S+ V R RP N E++ G++ +VK P E+ +L + Y FD+
Sbjct: 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDR 60
Query: 62 VFKPNATQEKVYDEAAKSIVS 82
VF +TQE+VY+ K +V
Sbjct: 61 VFDETSTQEEVYENTTKPLVD 81
>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup;
might play a role in cell shape remodeling. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 334
Score = 92.5 bits (230), Expect = 2e-20
Identities = 45/85 (52%), Positives = 57/85 (67%), Gaps = 2/85 (2%)
Query: 132 EEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQEN--LENEKKLSGKLYLVDLAG 189
EE ++ G+ NR IA T+MN+ SSRSH +F I+++ + +E KL LVDLAG
Sbjct: 185 EEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLSKLNLVDLAG 244
Query: 190 SEKVSKTGAEGTVLDEAKNINKSLS 214
SE+VSKTG G VL EAK INKSLS
Sbjct: 245 SERVSKTGVSGQVLKEAKYINKSLS 269
Score = 29.0 bits (65), Expect = 8.5
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 57 YLFDKVFKPNATQEKVYDEAAKSIVS 82
+ FD VF A+QE+VY+ AK +V
Sbjct: 50 FKFDGVFHN-ASQEEVYETVAKPVVD 74
>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup.
Members of this subgroup seem to play a role in mitosis
and meiosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 337
Score = 90.2 bits (224), Expect = 2e-19
Identities = 45/98 (45%), Positives = 60/98 (61%), Gaps = 2/98 (2%)
Query: 122 GATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLS-- 179
TE +V E+V++V+ +G +NR +A T+MN SSRSH+VF ++ +
Sbjct: 173 NLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRT 232
Query: 180 GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
+L LVDLAGSE+ GAEG L EAKNINKSLS G
Sbjct: 233 SRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLG 270
Score = 38.6 bits (90), Expect = 0.008
Identities = 20/67 (29%), Positives = 28/67 (41%)
Query: 15 DSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPNATQEKVYD 74
+++VV R RP N E G +K S S + + FD V N QE V+
Sbjct: 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSHPPRMFTFDHVADSNTNQEDVFQ 60
Query: 75 EAAKSIV 81
K +V
Sbjct: 61 SVGKPLV 67
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton].
Length = 568
Score = 91.0 bits (226), Expect = 5e-19
Identities = 65/212 (30%), Positives = 92/212 (43%), Gaps = 53/212 (25%)
Query: 57 YLFDKVFKPNATQEKVYDEAAKSIVSV-------------QFVDADQYMVSVD------- 96
Y FDKVF P+ATQE VY+E K ++ Q Y +S
Sbjct: 58 YAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGII 117
Query: 97 --------------RLRSDHQLKASTM-------------CEHSLMHL------IVFPGA 123
+ D + S + E SL + G
Sbjct: 118 PLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGVKVAGL 177
Query: 124 TERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLY 183
TE+ V EE+ +++ +G+ NR A T +N+ SSRSHS+F I + +N + + KL
Sbjct: 178 TEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETSKLS 237
Query: 184 LVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
LVDLAGSE+ ++TG GT L E +INKSL
Sbjct: 238 LVDLAGSERAARTGNRGTRLKEGASINKSLLT 269
>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group.
KIF2 is a protein expressed in neurons, which has been
associated with axonal transport and neuron development;
alternative splice forms have been implicated in
lysosomal translocation. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In this
subgroup the motor domain is found in the middle
(M-type) of the protein chain. M-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second (KIF2 may be slower). To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 322
Score = 88.5 bits (220), Expect = 5e-19
Identities = 69/264 (26%), Positives = 91/264 (34%), Gaps = 72/264 (27%)
Query: 17 IRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKF----------YLFDKVFKPN 66
I V R RPLN E G +V S K + FD VF
Sbjct: 3 ITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEA 62
Query: 67 ATQEKVYDE-------------------------------------------AAKSIVSV 83
T E+VY AA+ I +
Sbjct: 63 VTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRL 122
Query: 84 QFVDADQYMVSV-----------DRLRSDHQLKASTMCEHSLMHLIVFPGATERFVGKPE 132
D V+V D L +L + E + G TE+ V +
Sbjct: 123 LAQPNDDLGVTVSFFEIYGGKLFDLLNDRKRLS---VLEDG-KGNVQIVGLTEKPVTSVD 178
Query: 133 EVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEK 192
E+ E+IE G + R T N+ SSRSH++ I +K + L KL GKL +DLAGSE+
Sbjct: 179 ELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKLN---KLLGKLSFIDLAGSER 235
Query: 193 VSKTGAEGT-VLDEAKNINKSLSA 215
+ T E INKSL A
Sbjct: 236 GADTSEHDRQTRKEGAEINKSLLA 259
>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like
subgroup. Members of this group may play a role in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 345
Score = 87.4 bits (217), Expect = 2e-18
Identities = 49/125 (39%), Positives = 62/125 (49%), Gaps = 20/125 (16%)
Query: 97 RLRSDHQLKASTMCEHSLMHLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHS 156
RLR DH + G TE V EE EV + G+ NR +A T +N S
Sbjct: 162 RLREDHN------------GNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRES 209
Query: 157 SRSHSVFLINVKQENLENEKKLS--------GKLYLVDLAGSEKVSKTGAEGTVLDEAKN 208
SRSHSVF I + Q +++ + +L LVDLAGSE+ S+T G L EA N
Sbjct: 210 SRSHSVFTIKLVQAPGDSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGN 269
Query: 209 INKSL 213
IN SL
Sbjct: 270 INTSL 274
Score = 38.1 bits (89), Expect = 0.011
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 15 DSIRVVCRFRPLNHSEEKAGSK----------FIVKFPSGGEENGLSLGGKF----YLFD 60
D ++V R RPL+ E ++ + + P G G + F
Sbjct: 1 DPVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFS 60
Query: 61 KVFKPNATQEKVYDEAAKSIV 81
KVF PN TQ++ ++ A +V
Sbjct: 61 KVFGPNTTQKEFFEGTALPLV 81
>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like
subgroup. Members of this group might play a role in
regulating chromosomal movement along microtubules in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 319
Score = 76.4 bits (188), Expect = 5e-15
Identities = 40/98 (40%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 116 HLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENE 175
I+ G T + + E E NR +A T +N++SSRSH+V I V Q +
Sbjct: 159 GNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQP--ASN 216
Query: 176 KKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSL 213
+L GKL L+DLAGSE +TG EG L E+ IN SL
Sbjct: 217 IQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSL 254
Score = 31.3 bits (71), Expect = 1.7
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL---------GGKFYLFDKVFKPN 66
++RVV R RP + + S V+ + S+ K Y FD +
Sbjct: 1 NVRVVVRVRPF--LDCEEDSSSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTE 58
Query: 67 ATQEKVYDEAAKSIV 81
TQE ++ K IV
Sbjct: 59 CTQEDIFSREVKPIV 73
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 73.6 bits (181), Expect = 3e-13
Identities = 55/274 (20%), Positives = 109/274 (39%), Gaps = 3/274 (1%)
Query: 236 KSEVKNLVARCTSMESSQAEEHKKAIEYEKELGE-TRLLLQTNERREQARKDLKGLEDTV 294
+ E++ L + +E AE K E KEL E L Q + E+ + + L +
Sbjct: 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735
Query: 295 TKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQ 354
+ + L + Q + + EE E+ ++++ E +++L +Q
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA--EEELAEAEAEIEELEAQIEQ 793
Query: 355 LVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKEL 414
L + LR L +L L E + E+ R ++ E EE+ E
Sbjct: 794 LKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED 853
Query: 415 ITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETL 474
I + + E+L+ + L E E+ E + +AL L ++ S+E+ + L
Sbjct: 854 IESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSEL 913
Query: 475 TEELTLKQTTLNTTSTELQQIKDMSNHQKKRINE 508
EL + L L+ ++ ++ ++R++E
Sbjct: 914 RRELEELREKLAQLELRLEGLEVRIDNLQERLSE 947
Score = 61.2 bits (149), Expect = 2e-09
Identities = 83/385 (21%), Positives = 153/385 (39%), Gaps = 42/385 (10%)
Query: 275 QTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQ 334
+T + E+ R++L LED + EL+ L+ L Q +A K + AE E + L
Sbjct: 176 ETERKLERTRENLDRLED-ILNELER--QLKSLERQAEKAERYKELKAELRELELALLVL 232
Query: 335 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATM----ERVKLITTARRDY 390
R + L L++L + K+ + +L EL +LE++L E + I +++
Sbjct: 233 R--LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL 290
Query: 391 EQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 450
L E++RL Q+ + +E + L R E+L+ ++ L + + EE+ E+ + L
Sbjct: 291 YALANEISRLEQQKQILRERLANL----ERQLEELEAQLEELESKLDELAEELAELEEKL 346
Query: 451 EELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEML 510
EEL + E+E E E L L + L T +++ Q++ Q +N +
Sbjct: 347 EELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE----LQIASLNNEI 402
Query: 511 TNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDEQVNL 570
L L + E + +L ++ A L + + E E+ Q L
Sbjct: 403 ERLEARLERL------EDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEEL 456
Query: 571 ADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEE 630
+ + E A + E E +L +LD +
Sbjct: 457 ERLEEALEELREELEEA-------------------EQALDAAERELAQLQARLDSLERL 497
Query: 631 INQQSQYAEKLKEQIMEQEEVSGLL 655
++E +K + Q +SG+L
Sbjct: 498 QENLEGFSEGVKALLKNQSGLSGIL 522
Score = 55.8 bits (135), Expect = 7e-08
Identities = 67/270 (24%), Positives = 118/270 (43%), Gaps = 17/270 (6%)
Query: 253 QAEEHKKAIEYEKELGETRLLLQT------NERREQARKDLKGLEDTVTKELQTLHNLRK 306
QAE+ ++ E + EL E L L E E+ +++LK E+ + +EL L++
Sbjct: 208 QAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEEL-EELTA--ELQE 264
Query: 307 LFVQDLQARIKKSVTAEESED-DGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCE 365
L + + R++ S EE E+ A +IS LE L + L R +L +
Sbjct: 265 LEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQ 324
Query: 366 LPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKEL---ITTARRDY 422
L +LE +L E + + E+L+ E+ L E E + E++EL +
Sbjct: 325 LEELESKLDELAEELAELEE---KLEELKEELESLEAELEELEAELEELESRLEELEEQL 381
Query: 423 EQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLT-EELTLK 481
E L+ ++ +L + S E++ + LE L ++ QE+E K+ E +EL +
Sbjct: 382 ETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAE 441
Query: 482 QTTLNTTSTELQQIKDMSNHQKKRINEMLT 511
L ELQ+ + + + E L
Sbjct: 442 LEELEEELEELQEELERLEEALEELREELE 471
Score = 55.8 bits (135), Expect = 8e-08
Identities = 66/388 (17%), Positives = 146/388 (37%), Gaps = 51/388 (13%)
Query: 273 LLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSL 332
+L+ E+ + ++ LE+ + + + L LRK + + + EE
Sbjct: 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQ--IS 729
Query: 333 AQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQ 392
A R+ ++ LE ++QL + QL ++ +L E+ +LE+RL E + + E
Sbjct: 730 ALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA 789
Query: 393 LQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 452
++ + A +E++ +T + L+ + L + + + ++++ + +EE
Sbjct: 790 QIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849
Query: 453 LAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTN 512
L+ + + + E+E + E L EL L + + L
Sbjct: 850 LSEDIESLAAEIEELEELIEELESEL-----------EALLNERASLEEALALLRSELEE 898
Query: 513 LLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWR---NGETVKEDEQVN 569
L ++L E+ E +L E+ L + ++ R E + E+ +
Sbjct: 899 LSEELREL------ESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLT 952
Query: 570 LADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERL--------- 620
L + + I E A + ++LE + + L
Sbjct: 953 LEEAEALENKIEDDEEEARRRL-------------------KRLENKIKELGPVNLAAIE 993
Query: 621 -YQQLDEKDEEINQQSQYAEKLKEQIME 647
Y++L E+ + + Q + + KE + E
Sbjct: 994 EYEELKERYDFLTAQKEDLTEAKETLEE 1021
Score = 52.8 bits (127), Expect = 7e-07
Identities = 61/322 (18%), Positives = 124/322 (38%), Gaps = 41/322 (12%)
Query: 329 GGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARR 388
GGS I +++L + ++L A+L L +L K L E ++ +
Sbjct: 663 GGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELE 722
Query: 389 DYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQ 448
+ + + + E+ E+++E I ++ +L+ E+ L + E A+EE+ E
Sbjct: 723 ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEA 782
Query: 449 ALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINE 508
+EEL +Q +E++ + + L ELTL L+ ++ ++R+ E
Sbjct: 783 EIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL-E 841
Query: 509 MLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDEQV 568
L +++L E + +++ + +LE E L + + E
Sbjct: 842 DLEEQIEELSED--IESLAAEIEELEELIEELESELEA--LLNERASLEEALALLRSELE 897
Query: 569 NLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKD 628
L+ EE ++LE +R L ++L+E
Sbjct: 898 ELS------------------------------------EELRELESKRSELRRELEELR 921
Query: 629 EEINQQSQYAEKLKEQIMEQEE 650
E++ Q E L+ +I +E
Sbjct: 922 EKLAQLELRLEGLEVRIDNLQE 943
Score = 50.4 bits (121), Expect = 3e-06
Identities = 51/264 (19%), Positives = 106/264 (40%), Gaps = 32/264 (12%)
Query: 220 KLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQT--- 276
+L+EE A + ++ +E++ L + + +E ++ E +KEL +
Sbjct: 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQ 302
Query: 277 -----NERREQARKDLKGLEDTVTKELQTLHNLRKLF--VQDLQARIKKSVTAEESEDDG 329
ER + L+ LE + + L L + +++ +K+ + + E+E +
Sbjct: 303 QKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELE- 361
Query: 330 GSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRD 389
++ LE+ L++L + + L A L ++ L +
Sbjct: 362 ---ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE----------RLEAR 408
Query: 390 YEQLQGEMTRLTQENES--------AKEEVKELITTARRDYEQLQGEMTRLTQENESAKE 441
E+L+ RL QE E +E++ + + E+LQ E+ RL + E +E
Sbjct: 409 LERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELRE 468
Query: 442 EVKEVLQALEELAVNYDQKSQEVE 465
E++E QAL+ Q ++
Sbjct: 469 ELEEAEQALDAAERELAQLQARLD 492
Score = 37.3 bits (87), Expect = 0.030
Identities = 63/329 (19%), Positives = 129/329 (39%), Gaps = 60/329 (18%)
Query: 370 EKRLRAT---MERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQ 426
E++L T ++R++ I +L+ ++ L ++ E A E KEL + + +L+
Sbjct: 178 ERKLERTRENLDRLEDIL------NELERQLKSLERQAEKA-ERYKEL----KAELRELE 226
Query: 427 -----GEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLK 481
+ L +E E +EE+KE + LEEL + +++E E L EE+
Sbjct: 227 LALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEEL 286
Query: 482 QTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLE 541
Q L + E+ ++ QK+ + E L NL + L E+ + +L
Sbjct: 287 QKELYALANEISRL----EQQKQILRERLANLERQLEELEAQLEELESKLD------ELA 336
Query: 542 EEFTVARLYISKMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLM 601
EE + ++E +L ++ + ES
Sbjct: 337 EELA---------ELEEKLEELKEELESLEAELEELEAELEELESR-------------- 373
Query: 602 LGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTN 661
++LEE+ E L ++ + + +I + E+L+ ++ E+ L
Sbjct: 374 --------LEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE 425
Query: 662 ERREQARKDLKGLEDTVTKELQTLHNLRK 690
++ +LK L+ + + + L L++
Sbjct: 426 LLKKLEEAELKELQAELEELEEELEELQE 454
Score = 33.5 bits (77), Expect = 0.44
Identities = 46/253 (18%), Positives = 92/253 (36%), Gaps = 46/253 (18%)
Query: 450 LEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEM 509
LEEL ++ +E++ +E E LT EL + L E+ ++++ +K +
Sbjct: 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA- 292
Query: 510 LTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDEQVN 569
L N + L E ++ + LE + + +++ + ++
Sbjct: 293 LANEISRL---------EQQKQILRERLANLERQLEELEAQLEELESK-----LDELAEE 338
Query: 570 LADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDE 629
LA+ + + ES A + ++LE E E L +L+E +E
Sbjct: 339 LAELEEKLEELKEELESLEAEL-------------------EELEAELEELESRLEELEE 379
Query: 630 EINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQARKDLKGLEDTVTKELQTLHNLR 689
++ +L+ QI N E+ L+ LED + Q + L
Sbjct: 380 QLETLRSKVAQLELQI------------ASLNNEIERLEARLERLEDRRERLQQEIEELL 427
Query: 690 KLFVQDQVTSSQR 702
K + ++ Q
Sbjct: 428 KKLEEAELKELQA 440
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 65.1 bits (159), Expect = 1e-10
Identities = 62/271 (22%), Positives = 127/271 (46%), Gaps = 12/271 (4%)
Query: 253 QAEEHKKAIEYEKELGETRLLL------QTNERREQARKDLKGLEDTVTKELQTLHNLRK 306
QAE+ ++ E + EL E L L + + E+ ++L LE+ + +ELQ +
Sbjct: 208 QAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEEL-EELQEELEEAE 266
Query: 307 LFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCEL 366
+++L++ ++ + E E L +++I LE + L + ++L + +L L
Sbjct: 267 KEIEELKSELE-ELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERL 325
Query: 367 PKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESA----KEEVKELITTARRDY 422
+L++++ A E ++ T + EQL E+ +E E EE++EL R +
Sbjct: 326 EELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREEL 385
Query: 423 EQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQ 482
+L+ E+ + E E K E++ + + LE L+ + +E++ E E L EL
Sbjct: 386 AELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELN 445
Query: 483 TTLNTTSTELQQIKDMSNHQKKRINEMLTNL 513
L +L++++D ++ + E+ L
Sbjct: 446 EELEELEEQLEELRDRLKELERELAELQEEL 476
Score = 53.6 bits (129), Expect = 3e-07
Identities = 66/334 (19%), Positives = 140/334 (41%), Gaps = 31/334 (9%)
Query: 368 KLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESA------KEEVKEL-ITTARR 420
+ E++L T E ++ + + E+ ++ +L ++ E A K E++EL +
Sbjct: 176 EAERKLERTEENLERLEDLLEELEK---QLEKLERQAEKAERYQELKAELRELELALLLA 232
Query: 421 DYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTL 480
++L+ E+ L +E +EE++E+ + LEE ++ E+E +E E L EEL
Sbjct: 233 KLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLE 292
Query: 481 KQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKL 540
+ + E+ +++ + + E+ L + +I + +++ +L
Sbjct: 293 LKEEIEELEGEISLLRERLEELENELEELEERLEELKEKI---EALKEELEERETLLEEL 349
Query: 541 EEEFTVARLYISKMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGL 600
E+ +++ + ++E E++ A ++A A +
Sbjct: 350 EQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAEL-AEIRNELEEL------ 402
Query: 601 MLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQT 660
E + LEE ERL ++L++ EE+ + E+L+ ++ E E L
Sbjct: 403 ------KREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEEL----- 451
Query: 661 NERREQARKDLKGLEDTVTKELQTLHNLRKLFVQ 694
E+ E+ R LK LE + + + L L K
Sbjct: 452 EEQLEELRDRLKELERELAELQEELQRLEKELSS 485
Score = 53.2 bits (128), Expect = 4e-07
Identities = 63/308 (20%), Positives = 125/308 (40%), Gaps = 25/308 (8%)
Query: 217 GAGKLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQT 276
G + + + + +++ E+ L A+ +E + E L E R L+
Sbjct: 654 GGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEE 713
Query: 277 NERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQ 336
ER+ + K +EL L + L+ ++ EE ++ ++
Sbjct: 714 LERQLEELK----------RELAALEEELEQLQSRLEELEEELEELEEELEE-----LQE 758
Query: 337 KISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGE 396
++ LE L+ L + +L + +L + L++ L E + A R + L+ E
Sbjct: 759 RLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEE---ELEEAERRLDALERE 815
Query: 397 MTRLTQENESAKEEVKEL---ITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEL 453
+ L Q E ++E++EL I ++L+ E+ L +E E KEE++E+ EEL
Sbjct: 816 LESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEEL 875
Query: 454 AVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNL 513
+ +E E +E L EL + + L++++ +R+ L L
Sbjct: 876 EDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAK----LERLEVELPEL 931
Query: 514 LKDLCEIG 521
++L E
Sbjct: 932 EEELEEEY 939
Score = 52.4 bits (126), Expect = 8e-07
Identities = 78/351 (22%), Positives = 147/351 (41%), Gaps = 40/351 (11%)
Query: 309 VQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPK 368
+ +L+A+++K +S + ++ LE+ L++L + ++L R +L+ EL
Sbjct: 676 LAELEAQLEKLEEELKS--------LKNELRSLEDLLEELRRQLEELERQLEELKRELAA 727
Query: 369 LEKRLRATMERVKL----ITTARRDYEQLQGEMTRLTQENESAKEEVKEL---ITTARRD 421
LE+ L R++ + + E+LQ + L +E ES +E + +L I
Sbjct: 728 LEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEK 787
Query: 422 YEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLK 481
+ LQ E+ L +E E A+ + + + LE L ++ QE+E +E E L E+L
Sbjct: 788 RQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDEL 847
Query: 482 QTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLE 541
+ L EL+++K+ + E L + LK+L E + E +LE
Sbjct: 848 EEELEELEKELEELKEELEELEAEKEE-LEDELKELEEEKEELEEELR---------ELE 897
Query: 542 EEFTVARLYISKMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLM 601
E + I K++ R E + E++ + P ++ +
Sbjct: 898 SELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELE-------RE 950
Query: 602 LGSLSNEERQKLE-------EERERLYQQLDEKDEEINQQSQYAEKLKEQI 645
+ L EE + L EE E + ++ +E + + EKL E I
Sbjct: 951 IERL-EEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVI 1000
Score = 48.6 bits (116), Expect = 1e-05
Identities = 67/316 (21%), Positives = 130/316 (41%), Gaps = 16/316 (5%)
Query: 169 QENLENEKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAGKLEEEFTVA 228
E ++L +L ++ E + L+E + +SL A KL+EE
Sbjct: 726 AALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALA-KLKEEIEEL 784
Query: 229 RLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRL--LLQTNERREQARKD 286
++ E++ L E +AE A+E E E E R L Q E E+ ++
Sbjct: 785 EEKRQALQEELEEL-----EEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEE 839
Query: 287 LKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLD 346
L+ D + +EL+ L + ++L+ + E+ + ++ LE L
Sbjct: 840 LEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKE-----LEEEKEELEEELR 894
Query: 347 QLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQ--LQGEMTRLTQEN 404
+L +L + LR L +LE +L + + + + L+ E+ R +
Sbjct: 895 ELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERL 954
Query: 405 ESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEV 464
E E + + A +YE+++ L + E +E +++L+ +EEL ++ +E
Sbjct: 955 EEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKET 1014
Query: 465 ETK-NKEFETLTEELT 479
K N+ F + +EL
Sbjct: 1015 FDKINENFSEIFKELF 1030
Score = 47.0 bits (112), Expect = 4e-05
Identities = 52/254 (20%), Positives = 107/254 (42%), Gaps = 24/254 (9%)
Query: 220 KLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNER 279
+L+EE + I +++ E+ L R +E+ E ++ E ++++ + + E
Sbjct: 285 ELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALK---EELEE 341
Query: 280 REQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQ-RQKI 338
RE ++L+ L + + + L +++L+ + EE + LA+ R ++
Sbjct: 342 RETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEAL--REELAELEAELAEIRNEL 399
Query: 339 SFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMT 398
L+ ++ L + ++L DL+ EL +LE L + + E+L E+
Sbjct: 400 EELKREIESLEERLERLSERLEDLKEELKELEAELEEL----------QTELEELNEELE 449
Query: 399 RLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYD 458
L ++ E ++ +KEL R+ +LQ E+ RL +E S + L LE
Sbjct: 450 ELEEQLEELRDRLKEL----ERELAELQEELQRLEKELSSLEAR----LDRLEAEQRASQ 501
Query: 459 QKSQEVETKNKEFE 472
+E
Sbjct: 502 GVRAVLEALESGLP 515
Score = 43.5 bits (103), Expect = 4e-04
Identities = 56/321 (17%), Positives = 122/321 (38%), Gaps = 55/321 (17%)
Query: 383 ITTARRDYEQLQGEMTRLTQENESAKEEVKEL---ITTARRDYEQLQGEMTRLTQENESA 439
+ E+L+ E+ L E S ++ ++EL + R E+L+ E+ L +E E
Sbjct: 676 LAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQL 735
Query: 440 KEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIK--- 496
+ ++E+ + LEEL ++ + +E +E E+L E L + + + Q ++
Sbjct: 736 QSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEEL 795
Query: 497 DMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKW 556
+ + + L L E +++ +LE+E + L +
Sbjct: 796 EELEEELEEAERRLDAL-------------ERELESLEQRRERLEQE--IEELEEEIEEL 840
Query: 557 RNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEE 616
E+E L ++ E+++LE+E
Sbjct: 841 EEKLDELEEELEELEKELEELKEEL----------------------EELEAEKEELEDE 878
Query: 617 RERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQARKDLKGLED 676
+ L ++ +E +EE+ + +LKE+I + ER E+ L+ LE
Sbjct: 879 LKELEEEKEELEEELRELESELAELKEEIEKLR------------ERLEELEAKLERLEV 926
Query: 677 TVTKELQTLHNLRKLFVQDQV 697
+ + + L + ++ ++
Sbjct: 927 ELPELEEELEEEYEDTLETEL 947
Score = 42.4 bits (100), Expect = 9e-04
Identities = 54/256 (21%), Positives = 111/256 (43%), Gaps = 11/256 (4%)
Query: 262 EYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVT 321
+Y++ E + E+ ++L+ LED + +EL+ L KL Q +A + +
Sbjct: 169 KYKERKEEAE------RKLERTEENLERLED-LLEELEK--QLEKLERQAEKAERYQELK 219
Query: 322 AEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVK 381
AE E + L K+ L L++L + +L + +L+ EL + EK + ++
Sbjct: 220 AELRELELALLLA--KLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELE 277
Query: 382 LITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKE 441
+ + ++ E+ +E E ++E + + E+L+ + L ++ E+ KE
Sbjct: 278 ELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKE 337
Query: 442 EVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNH 501
E++E LEEL + + E ++ L EEL L EL+ +
Sbjct: 338 ELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRN 397
Query: 502 QKKRINEMLTNLLKDL 517
+ + + + +L + L
Sbjct: 398 ELEELKREIESLEERL 413
Score = 37.4 bits (87), Expect = 0.028
Identities = 58/292 (19%), Positives = 121/292 (41%), Gaps = 43/292 (14%)
Query: 405 ESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEV 464
+ +E++E + E+L+ E+ L E S ++ ++E+ + LEEL ++ +E+
Sbjct: 666 KRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKREL 725
Query: 465 ETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVI 524
+E E L L + L EL+++++ ++ + + L K EI
Sbjct: 726 AALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIE--- 782
Query: 525 GSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDEQVNLADPVDMAASIAPTP 584
E + + +LEEE A + ++ + E++
Sbjct: 783 ELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLE--------------- 827
Query: 585 ESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQ 644
+E ++LEEE E L ++LDE +EE+ + + E+LKE+
Sbjct: 828 -----------------------QEIEELEEEIEELEEKLDELEEELEELEKELEELKEE 864
Query: 645 IME-QEEVSGLLV-CGQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQ 694
+ E + E L + E +E+ ++L+ LE + + + + LR+ +
Sbjct: 865 LEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEE 916
Score = 35.1 bits (81), Expect = 0.15
Identities = 20/96 (20%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 608 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQA 667
EE ++LE E L ++L+E + E+ + + E+LKE+I + + E RE
Sbjct: 295 EEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALK---------EELEERETL 345
Query: 668 RKDLKGLEDTVTKELQTLHNLRKLFVQDQVTSSQRW 703
++L+ L + + + L +++ +
Sbjct: 346 LEELEQLLAELEEAKEELEEKLSALLEELEELFEAL 381
Score = 31.2 bits (71), Expect = 2.3
Identities = 59/300 (19%), Positives = 126/300 (42%), Gaps = 47/300 (15%)
Query: 395 GEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELA 454
G +T ++ S+ + +EL +L+ ++ +L +E +S K E++ + LEEL
Sbjct: 650 GSITGGSRNKRSSLAQKRELKELEEEL-AELEAQLEKLEEELKSLKNELRSLEDLLEELR 708
Query: 455 VNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLL 514
++ +++E +E L EEL Q+ L EL+++++ ++R+ E+ L
Sbjct: 709 RQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEEL- 767
Query: 515 KDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDEQVNLADPV 574
LEE + I +++ + +E E++
Sbjct: 768 -----------------------ESLEEALAKLKEEIEELEEKRQALQEELEEL------ 798
Query: 575 DMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQ 634
+ A A L ++ + R++LE+E E L ++++E +E+++
Sbjct: 799 EEELEEAERRLDALERELESL-----------EQRRERLEQEIEELEEEIEELEEKLD-- 845
Query: 635 SQYAEKLKEQIMEQEEVSGLLVCGQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQ 694
+ E+L+E E EE+ L + +E+ +LK LE+ + + L L +
Sbjct: 846 -ELEEELEELEKELEELKEELE--ELEAEKEELEDELKELEEEKEELEEELRELESELAE 902
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 63.0 bits (153), Expect = 5e-10
Identities = 42/98 (42%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Query: 124 TERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSG--- 180
TE +V ++V +++ +G +NR T++N SSRSHSVF V+ LS
Sbjct: 269 TEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKT 328
Query: 181 -KLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
++ LVDLAGSE+ TGA G L EA NIN+SLS G
Sbjct: 329 SRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLG 366
Score = 33.0 bits (75), Expect = 0.70
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 13 AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPNATQEKV 72
++ ++V+ R +PLN EE + IV+ S + L++ G+ + FD + P +TQE +
Sbjct: 96 SDSGVKVIVRMKPLNKGEE---GEMIVQKMSN---DSLTINGQTFTFDSIADPESTQEDI 149
Query: 73 Y 73
+
Sbjct: 150 F 150
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 58.2 bits (141), Expect = 1e-08
Identities = 81/474 (17%), Positives = 183/474 (38%), Gaps = 50/474 (10%)
Query: 219 GKLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNE 278
K E+ + + I + K++++ L + + E+ +A+E E + + +Q +
Sbjct: 167 EKYEKLSELLKEVIKEAKAKIEELEGQLSE-LLEDIEDLLEALEEELKELKKLEEIQEEQ 225
Query: 279 RREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQR-QK 337
E+ ++++ LE+ + + + L +L + L+ + + E++ L + ++
Sbjct: 226 EEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEE 285
Query: 338 ISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEM 397
+ L++L + ++L + LR L +LE+ L + + E+L+ E+
Sbjct: 286 LEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESEL 345
Query: 398 TRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNY 457
L +E + ++E + E+L+ E+ + + + +E ++E+ + L EL+
Sbjct: 346 EELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAAL 405
Query: 458 DQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDL 517
++ +E+E KE E L EL + + ++ Q E++ L
Sbjct: 406 EEIQEELEELEKELEELERELEELEEEIKKLEEQINQ---------LESKELMIAELAGA 456
Query: 518 CEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDEQVNLADPVDMA 577
E V G E + + E E +S+ K + +E
Sbjct: 457 GEKCPVCGQELPEEHEKELLELYELELEELEEELSREKEEAELREEIEE----------- 505
Query: 578 ASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQY 637
+E ++LEEE L + + EE+ ++ +
Sbjct: 506 ----------------------------LEKELRELEEELIELLELEEALKEELEEKLEK 537
Query: 638 AEKLKEQIMEQEEVSGLLVCGQTNERREQARKDLKGLEDTVTKELQTLHNLRKL 691
E L E++ E +E L + + E ++LK L + + L +L
Sbjct: 538 LENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEEL 591
Score = 45.5 bits (108), Expect = 1e-04
Identities = 60/307 (19%), Positives = 126/307 (41%), Gaps = 24/307 (7%)
Query: 219 GKLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNE 278
KLEE+ M +E+ +C EEH+K + EL L + +
Sbjct: 434 KKLEEQINQLESK-ELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSR 492
Query: 279 RREQA---------RKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDG 329
+E+A K+L+ LE+ + + L+ L++ + L+ EE ++
Sbjct: 493 EKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKL 552
Query: 330 GSLAQRQKISFLENNLDQLTKVHKQLVRDN------ADLRCELPKLEKRLRATMERVKLI 383
++++ LE+ L +L ++ ++L +LR L +L+K+L+ ER+ +
Sbjct: 553 QLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQL 612
Query: 384 TTARRD------YEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENE 437
+ +L+ L E E + EL + E+L+ ++ L E
Sbjct: 613 EELLQSLELSEAENELEEAEEELESELEKLNLQ-AELEELLQAALEELEEKVEELEAE-I 670
Query: 438 SAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKD 497
+ + E + LEE +Q +E+E +E E L ++L + + + ++++
Sbjct: 671 RRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEE 730
Query: 498 MSNHQKK 504
+ +K
Sbjct: 731 LKKELEK 737
Score = 44.4 bits (105), Expect = 2e-04
Identities = 93/467 (19%), Positives = 196/467 (41%), Gaps = 47/467 (10%)
Query: 232 ISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQT--NERREQARKDLKG 289
+ ++ ++K+L R +E E+ +K +EL E + L ER ++ + L+
Sbjct: 317 LEELLEKLKSLEERLEKLE----EKLEKLESELEELAEEKNELAKLLEERLKELEERLEE 372
Query: 290 LEDTVTKELQTLHNLRK---LFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLD 346
LE + K L+ L L + ++L +E + +++ LE L+
Sbjct: 373 LEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELE-----ELEKELEELERELE 427
Query: 347 QLTKVHKQLVRDNADLRCELPKLEKRLRA------------TMERVKLITTARRDYEQLQ 394
+L + K+L L + + + A +L+ + E+L+
Sbjct: 428 ELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELE 487
Query: 395 GEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELA 454
E++R +E +EE++EL R E+L + E +E+++++ LEEL
Sbjct: 488 EELSR-EKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELE 546
Query: 455 VNYDQ-KSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNL 513
++ + Q+++ + ++ E +EL L T ++++++ + K + + L L
Sbjct: 547 ELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEEL-RERLKELKKKLKEL 605
Query: 514 LKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDEQVNLADP 573
+ L ++ E ++ + E E L K ++E Q L +
Sbjct: 606 EERLSQL------EELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEEL 659
Query: 574 VDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQ 633
+ + E+ L I + L EE ++LEEE E+L ++L+E +++ +
Sbjct: 660 EEKVEEL----EAEIRRELQRIENEEQLEEKL--EELEQLEEELEQLREELEELLKKLGE 713
Query: 634 QSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQARKDLKGLEDTVTK 680
Q E+L+ + E EE+ L E+ E+A + L+ L + + K
Sbjct: 714 IEQLIEELESRKAELEELKKEL------EKLEKALELLEELREKLGK 754
Score = 44.0 bits (104), Expect = 3e-04
Identities = 88/475 (18%), Positives = 190/475 (40%), Gaps = 32/475 (6%)
Query: 234 KMKSEVKNLVARCTSMESSQAEEHKKAI-EYEKELGETRLLLQTNERREQARKDLKGLED 292
+ E+K + S+E + ++ + E E+ L E ++ E E+ ++L+ +
Sbjct: 249 ERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELE 308
Query: 293 TVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQK------ISFLENNLD 346
+ L+ L L + + K E+ E + LA+ + L+ +
Sbjct: 309 GLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEE 368
Query: 347 QLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENES 406
+L ++ K+L + L+ +LE+ ++ E + ++ A + ++ E+ + +E E
Sbjct: 369 RLEELEKELEKALERLK----QLEEAIQELKEELAELSAALEEIQEELEELEKELEELER 424
Query: 407 AKEEVKELITTARRDYEQLQGEMTRLTQE----------NESAKEEVKEVLQALEELAVN 456
EE++E I QL+ + + + + EE ++ L L EL +
Sbjct: 425 ELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELE 484
Query: 457 YDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKD 516
++ E + E EEL + L EL ++++ + + E L NLL++
Sbjct: 485 ELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEE 544
Query: 517 LCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDEQVNLADPVDM 576
L E+ + + +K +E + ++ R E + E++
Sbjct: 545 LEELKEKLQLQ-QLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLK 603
Query: 577 AASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQ 636
S +L ++ S E ++ EEE E ++L+ + E
Sbjct: 604 ELEER---LSQLEELLQSLELSEA------ENELEEAEEELESELEKLNLQAELEELLQA 654
Query: 637 YAEKLKEQIMEQE-EVSGLLVCGQTNERREQARKDLKGLEDTVTKELQTLHNLRK 690
E+L+E++ E E E+ L + E+ E+ ++L+ LE+ + + + L L K
Sbjct: 655 ALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLK 709
Score = 37.0 bits (86), Expect = 0.035
Identities = 64/389 (16%), Positives = 147/389 (37%), Gaps = 27/389 (6%)
Query: 315 RIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLR 374
++ ++ + + A +++ L+ + + ++ + + L + L
Sbjct: 189 ELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIE---ALEERLAELE 245
Query: 375 ATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQ 434
ER++ + + E L+ E ++ +E E + E + E+L+ E+ L +
Sbjct: 246 EEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEE 305
Query: 435 ENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQ 494
E E + ++E+ + LE+L + +E ++ E L EL N + L++
Sbjct: 306 ELEGLRALLEELEELLEKLK----SLEERLEKLEEKLEKLESELEELAEEKNELAKLLEE 361
Query: 495 IKDMSNHQKKRINEMLTNLLKDLCEIGLVI------GSEGDMKVTSDGAGKLEEEFTVAR 548
+ + + + L L+ L ++ I +E + E E +
Sbjct: 362 RLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEE 421
Query: 549 LYISKMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNE 608
L + E++ L M A +A E P + L E
Sbjct: 422 LERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCP-----------VCGQELPEE 470
Query: 609 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQAR 668
++L E E ++L+E+ ++++ E+++E E E+ L+ + E E +
Sbjct: 471 HEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELI--ELLELEEALK 528
Query: 669 KDLKGLEDTVTKELQTL-HNLRKLFVQDQ 696
++L+ + + L+ L KL +Q
Sbjct: 529 EELEEKLEKLENLLEELEELKEKLQLQQL 557
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 48.5 bits (116), Expect = 1e-05
Identities = 57/297 (19%), Positives = 126/297 (42%), Gaps = 31/297 (10%)
Query: 220 KLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNER 279
K E E ++ + + + + S+E + ++ E EK L E LL E
Sbjct: 220 KREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLL--EEL 277
Query: 280 REQARKDLKGLEDTVTKELQTLH----------NLRKLFVQDLQARIKKSV-----TAEE 324
++ + + + V +++ L ++ ++D + R+ K E
Sbjct: 278 NKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE 337
Query: 325 SEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRAT----MERV 380
E+ + + +K D+LT+ + +L + DLR EL +++K T +
Sbjct: 338 IEELEREIEEERK------RRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR 391
Query: 381 KLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAK 440
+ + +R+ +L+ E+ RL +E + EE+ +L ++ ++ L +E E
Sbjct: 392 EKLEKLKREINELKRELDRLQEELQRLSEELADL----NAAIAGIEAKINELEEEKEDKA 447
Query: 441 EEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKD 497
E+K+ LE+LA + + QE+ +E++ + +EL+ Q L + + ++
Sbjct: 448 LEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEE 504
Score = 46.6 bits (111), Expect = 5e-05
Identities = 65/315 (20%), Positives = 141/315 (44%), Gaps = 12/315 (3%)
Query: 170 ENLENEKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAGKLEEEFTVAR 229
E++E ++L GK +V L G E K+GA + + + E +
Sbjct: 627 EDIEAARRLMGKYRMVTLEG-ELFEKSGA----MTGGSRAPRGGILFSRSEPAELQRLRE 681
Query: 230 LYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRL-LLQTNERREQARKDLK 288
+ +K E+ +L + +E+ E ++ + +++GE + Q + E+ ++ L+
Sbjct: 682 -RLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLE 740
Query: 289 GLEDTVTKELQTLHNLRKLFVQDLQARI-KKSVTAEESEDDGGSLAQRQKISFLENNLDQ 347
LE+ ++ Q + N++ +++L+ARI + + E+ L R S + +
Sbjct: 741 ELEEDLSSLEQEIENVKSE-LKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAE 799
Query: 348 LTKVHKQLVRDNADLRCELPKLEKR--LRATMERVKLITTARRDYEQLQGEMTRLTQEN- 404
L+K+ +++ R A LR KL + + +E+ +R + Q + EN
Sbjct: 800 LSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENL 859
Query: 405 ESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEV 464
KEE++E + L+ + L +E + + +++E+ + +EEL ++K + +
Sbjct: 860 NGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRL 919
Query: 465 ETKNKEFETLTEELT 479
+ E L EEL+
Sbjct: 920 SELKAKLEALEEELS 934
Score = 45.8 bits (109), Expect = 8e-05
Identities = 55/269 (20%), Positives = 103/269 (38%), Gaps = 29/269 (10%)
Query: 387 RRDYEQLQGEMTRLTQENESAKEEVKEL---ITTARRDYEQLQGEMTRLTQENESAKEEV 443
R E L+ E++ L E + + EL ++ A R +++ E+ +L QE E KE
Sbjct: 680 RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKER- 738
Query: 444 KEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQK 503
LEEL + QE+E E + L + + L+ L ++ +H +
Sbjct: 739 ------LEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR 792
Query: 504 -KRINEMLTNLLKDLCEIGLVIGS-EGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGET 561
I L+ L +++ I + E + + LE+E + +K +
Sbjct: 793 IPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSI 852
Query: 562 VKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLY 621
KE E +N ++ + L L L++ER+ L
Sbjct: 853 EKEIENLN-GKKEELEEELEELE---------------AALRDLE-SRLGDLKKERDELE 895
Query: 622 QQLDEKDEEINQQSQYAEKLKEQIMEQEE 650
QL E + +I + EK ++++ E +
Sbjct: 896 AQLRELERKIEELEAQIEKKRKRLSELKA 924
Score = 44.3 bits (105), Expect = 2e-04
Identities = 55/308 (17%), Positives = 125/308 (40%), Gaps = 43/308 (13%)
Query: 275 QTNERREQARKDLKGLE----------DTVTKELQTLHNLR--KLFVQDLQARIKKSVTA 322
+ + ++E+A ++L+ +E D ++L+ L R Q L ++
Sbjct: 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKRE---Y 223
Query: 323 EESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKL 382
E E A ++ +E L L + ++L + ++L L ++E+ L +++K
Sbjct: 224 EGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKD 283
Query: 383 IT-----TARRDYEQLQGEMTRLTQENESAKEEVKEL-----------------ITTARR 420
+ + +L+ E+ L + + E+++ I R
Sbjct: 284 LGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELER 343
Query: 421 DYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTL 480
+ E+ + +LT+E KEE++++ LEE+ + + E++ ++ E L E+
Sbjct: 344 EIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINE 403
Query: 481 KQTTLNTTSTELQQIK----DMSNHQKKRINEMLTNLLKDLCEIGLVI-GSEGDMKVTSD 535
+ L+ ELQ++ D++ I + L ++ + L I E ++ +
Sbjct: 404 LKRELDRLQEELQRLSEELADLNA-AIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAA 462
Query: 536 GAGKLEEE 543
K E+E
Sbjct: 463 DLSKYEQE 470
Score = 42.7 bits (101), Expect = 7e-04
Identities = 49/233 (21%), Positives = 92/233 (39%), Gaps = 29/233 (12%)
Query: 273 LLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSL 332
L R E +L ++++ + + Q+ + ++ EE E+D SL
Sbjct: 693 LQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKER---LEELEEDLSSL 749
Query: 333 AQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQ 392
Q+I +++ L +L ++L D L L LE RL R+ I
Sbjct: 750 --EQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS--HSRIPEIQ-------- 797
Query: 393 LQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 452
E +EEV + R +++ ++ RLT E E ++E++E+ + +
Sbjct: 798 ---------AELSKLEEEVSRIEARLR----EIEQKLNRLTLEKEYLEKEIQELQEQRID 844
Query: 453 LAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQI-KDMSNHQKK 504
L +E+E N + E L EEL + L + L + K+ + +
Sbjct: 845 LKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQ 897
Score = 37.4 bits (87), Expect = 0.030
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 406 SAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVE 465
S E++ L R E L+ E++ L E + + E+ Q L + + + +E+E
Sbjct: 671 SEPAELQRL----RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIE 726
Query: 466 TKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEM 509
+E E L E L + L++ E++ +K + RI E+
Sbjct: 727 QLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEEL 770
Score = 30.0 bits (68), Expect = 6.3
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 608 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLV 656
E KLE E ++L +++E + EI ++ + +KL E+ E +E L
Sbjct: 322 ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLR 370
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein. Members of this
protein family have a signal peptide, a strongly
conserved SH3 domain, a variable region, and then a
C-terminal hydrophobic transmembrane alpha helix region.
Length = 198
Score = 44.2 bits (105), Expect = 7e-05
Identities = 24/105 (22%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 385 TARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVK 444
+AR +LQ E+ L +E +E++ EL +++ ++L+ E++ L E E ++E
Sbjct: 63 SARERLPELQQELAELQEELAELQEQLAEL----QQENQELKQELSTLEAELERLQKE-L 117
Query: 445 EVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTS 489
++ L A+ D++++E+ + E + E L + L
Sbjct: 118 ARIKQLSANAIELDEENRELREELAELKQENEALEAENERLQENE 162
Score = 39.6 bits (93), Expect = 0.002
Identities = 20/88 (22%), Positives = 46/88 (52%)
Query: 335 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQ 394
+++++ L+ L +L + +++L ++ + L EL +L+K L + + +L+
Sbjct: 79 QEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAIELDEENRELR 138
Query: 395 GEMTRLTQENESAKEEVKELITTARRDY 422
E+ L QENE+ + E + L +R +
Sbjct: 139 EELAELKQENEALEAENERLQENEQRRW 166
Score = 37.7 bits (88), Expect = 0.010
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 430 TRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTS 489
+R + SA+E + E+ Q L EL + +++ +E + L +EL+ + L
Sbjct: 55 SRYLSDTPSARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQ 114
Query: 490 TELQQIKDMSNHQK--KRINEMLTNLLKDL 517
EL +IK +S + N L L +L
Sbjct: 115 KELARIKQLSANAIELDEENRELREELAEL 144
Score = 36.1 bits (84), Expect = 0.027
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 417 TARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTE 476
+AR +LQ E+ L +E +E++ E+ Q +EL E+E KE + +
Sbjct: 63 SARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARI-K 121
Query: 477 ELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDL 517
+L+ L+ + EL++ + K+ NE L + L
Sbjct: 122 QLSANAIELDEENRELRE----ELAELKQENEALEAENERL 158
Score = 35.0 bits (81), Expect = 0.085
Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 345 LDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQEN 404
L +L + +L + A+L+ +L +L++ + + + +T + E+LQ E+ R+ Q +
Sbjct: 68 LPELQQELAELQEELAELQEQLAELQQENQELKQEL---STLEAELERLQKELARIKQLS 124
Query: 405 ESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVK 444
+A E+ E R + +L+ E L ENE +E +
Sbjct: 125 ANA-IELDEENRELREELAELKQENEALEAENERLQENEQ 163
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 45.0 bits (106), Expect = 2e-04
Identities = 51/252 (20%), Positives = 87/252 (34%), Gaps = 12/252 (4%)
Query: 254 AEEHKKAIEYEKELGETRL------------LLQTNERREQARKDLKGLEDTVTKELQTL 301
E+ KKA+EY + + L L + Q + E +K+
Sbjct: 204 KEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEK 263
Query: 302 HNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNAD 361
V +K +E E + + + S L + ++L +
Sbjct: 264 EEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKE 323
Query: 362 LRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRD 421
L+ +L+K E K + E + E +L + E ++ +EL+ + +
Sbjct: 324 LKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLE 383
Query: 422 YEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLK 481
E+L +E E EE KE LE D +E + + K E L E L K
Sbjct: 384 SERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETK 443
Query: 482 QTTLNTTSTELQ 493
Q L EL+
Sbjct: 444 QGKLTEEKEELE 455
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 44.7 bits (106), Expect = 2e-04
Identities = 54/226 (23%), Positives = 113/226 (50%), Gaps = 14/226 (6%)
Query: 232 ISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETR----LLLQTNERREQARKDL 287
+ +++ E++ L +E + E + E E G R + + ER E+ +K++
Sbjct: 216 LPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEI 275
Query: 288 KGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQ 347
+ LE+ V KEL+ L + +++ + + E E L ++I+ +E + +
Sbjct: 276 EELEEKV-KELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRL--EEEINGIEERIKE 332
Query: 348 LTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESA 407
L + ++L +L+ +L +LEKRL ER +L A+ E+L+ RLT
Sbjct: 333 LEEKEERL----EELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLT--- 385
Query: 408 KEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEL 453
E++++ + + E+++ E++++T K+E+KE+ +A+EEL
Sbjct: 386 PEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEEL 431
Score = 42.0 bits (99), Expect = 0.001
Identities = 88/483 (18%), Positives = 184/483 (38%), Gaps = 59/483 (12%)
Query: 220 KLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLLLQT 276
+L+EE + ++ + L + +E E K+ E E KEL E + +
Sbjct: 235 ELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEE 294
Query: 277 NERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQR- 335
+ + ++ + K L L + ++ +K EE + L +R
Sbjct: 295 YIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRL 354
Query: 336 ----------QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITT 385
++ + L++L K L + L EL +LEK E + IT
Sbjct: 355 EELEERHELYEEAKAKKEELERLKKRLTGLTPE--KLEKELEELEKAKEEIEEEISKITA 412
Query: 386 ARRDYEQLQGEMTRLTQENESAK------------EEVKELITTARRDYEQLQGEMTRLT 433
+ ++ E+ + +E + AK E KEL+ + ++++ E+ +
Sbjct: 413 RIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIE 472
Query: 434 QENESAKEEVKEV---LQALEELAVNYDQKSQ--------------EVETKNKEFETLTE 476
++ ++E++E+ L+ EL + Q E+E K +E+E L E
Sbjct: 473 EKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKE 532
Query: 477 ELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDG 536
+L + + + EL++++++ + + + L L ++L E+ + G + +
Sbjct: 533 KLIKLKGEIKSLKKELEKLEELKK-KLAELEKKLDELEEELAELLKELEELG-FESVEEL 590
Query: 537 AGKLEEEFTVARLYISKMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIP 596
+L+E Y+ +E E L + +D A E + +
Sbjct: 591 EERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELE 650
Query: 597 GSGLMLGSLSNEERQK--------LEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQ 648
L +EE + L E L +L+E ++ + + EKLKE++ E+
Sbjct: 651 E----LEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEER 706
Query: 649 EEV 651
E+
Sbjct: 707 EKA 709
Score = 39.3 bits (92), Expect = 0.008
Identities = 54/242 (22%), Positives = 110/242 (45%), Gaps = 19/242 (7%)
Query: 268 GETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESED 327
GE +L+++E RE+ + + GL+D + L + K + R++K + E+ +
Sbjct: 135 GEIDAILESDESREKVVRQILGLDD-YENAYKNLGEVIKEI-KRRIERLEKFIKRTENIE 192
Query: 328 DGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTAR 387
+ I E L+++ + ++ + +LR EL KLEK ++ E + I
Sbjct: 193 E--------LIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELE 244
Query: 388 RDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVL 447
++ E L+G +L E E++E I +++ E+L+ ++ L + E A+E +K
Sbjct: 245 KELESLEGSKRKL----EEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIK--- 297
Query: 448 QALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRIN 507
L E Y + +E+E + E + + L L+++K +KR+
Sbjct: 298 --LSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLE 355
Query: 508 EM 509
E+
Sbjct: 356 EL 357
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 43.8 bits (104), Expect = 3e-04
Identities = 54/288 (18%), Positives = 114/288 (39%), Gaps = 51/288 (17%)
Query: 377 MERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTAR-RDYEQLQGEMTRL--- 432
M++V ++T + +++ + L + E++KE ++ R R L +++
Sbjct: 6 MKKVLIVTL-KSYKDEV---LEALHELGVVHIEDLKEELSNERLRKLRSLLTKLSEALDK 61
Query: 433 ----TQENESAKEEVKEV-LQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNT 487
+ +EE K+V +++LEEL + +++ +++E KE + L EE++
Sbjct: 62 LRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIE---KEIKELEEEIS-------- 110
Query: 488 TSTELQQIKDMSNHQKKRINEMLTNL---LKDLCEIGLVIGSEGDMKVTSDGAGKLEEEF 544
EL+ + +R+ E N L L V G + KLE +
Sbjct: 111 ---ELENEIKELEQEIERL-EPWGNFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDV 166
Query: 545 TVARLYISKMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILP-AIPGSGLMLG 603
YIS T K V + +++ + E + G
Sbjct: 167 ENV-EYIS--------TDKGYVYVVVVVLKELSDEVEE--ELKKLGFERLELEEEGT--- 212
Query: 604 SLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEV 651
+E ++++EE E + ++ + EE+ + A+K E+++ E
Sbjct: 213 --PSELIREIKEELEEIEKERESLLEELK---ELAKKYLEELLALYEY 255
Score = 29.1 bits (66), Expect = 9.0
Identities = 15/85 (17%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 382 LITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKE 441
++ + + E+ ++ + E++E T + +++ E+ + +E ES E
Sbjct: 182 VVVVLKELSD----EVEEELKKLGFERLELEEEGTPSEL-IREIKEELEEIEKERESLLE 236
Query: 442 EVKEVLQALEELAVNYDQK-SQEVE 465
E+KE+ + E + + E+E
Sbjct: 237 ELKELAKKYLEELLALYEYLEIELE 261
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 41.9 bits (99), Expect = 0.001
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 390 YEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQA 449
LQ E+ L Q+ E E + ++ E Q E+ L +E+ +E+
Sbjct: 144 LHALQQEVLTLKQQLELQAREKAQ----SQALAEAQQQELVALEGLAAELEEKQQELEAQ 199
Query: 450 LEELAVNYDQKSQEVETKNKEFE-------TLTEELT 479
LE+L + SQE + K KE L+EE T
Sbjct: 200 LEQLQEKAAETSQERKQKRKEITDQAAKRLELSEEET 236
Score = 36.9 bits (86), Expect = 0.049
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 422 YEQLQGEMTRLTQENE---SAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEEL 478
LQ E+ L Q+ E K + + + +A ++ V + + E+E K +E E E+
Sbjct: 144 LHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQ- 202
Query: 479 TLKQTTLNTTSTELQQIKDMSNHQKKRIN--EMLTNLLKD 516
L++ T+ Q+ K++++ KR+ E T +L D
Sbjct: 203 -LQEKAAETSQERKQKRKEITDQAAKRLELSEEETRILID 241
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 41.9 bits (99), Expect = 0.001
Identities = 63/302 (20%), Positives = 118/302 (39%), Gaps = 35/302 (11%)
Query: 219 GKLE---EEFTVARLYISKMKSEVKNLVARCTSM--ESSQAEEHKKAIEYEKELGETRLL 273
GKLE E + ARL + ++ S+ + + + + E + + H++ E EL E
Sbjct: 162 GKLEEYRERASDARLGVERVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEE 221
Query: 274 LQT-NERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKS-VTAEESEDDGGS 331
++ E+REQAR+ ++ + + + L + L+A I+ T E+E +
Sbjct: 222 IERYEEQREQARETRDEADEVLEEHEERREEL-----ETLEAEIEDLRETIAETEREREE 276
Query: 332 LAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYE 391
LA+ DLR L +LE+ + L E
Sbjct: 277 LAEEV-----------------------RDLRERLEELEEERDDLLAEAGLDDADAEAVE 313
Query: 392 QLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE 451
+ E+ +E EE + + E L+ + L + E +EE E+ LE
Sbjct: 314 ARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELE 373
Query: 452 ELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLT 511
E + + +E+E +E E L E L L+++++ + ++R E+
Sbjct: 374 EAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEA 433
Query: 512 NL 513
L
Sbjct: 434 TL 435
Score = 33.9 bits (78), Expect = 0.39
Identities = 76/386 (19%), Positives = 144/386 (37%), Gaps = 49/386 (12%)
Query: 334 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQL 393
R + L + L +LR E +LE L E + R + E+L
Sbjct: 333 CRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREA---VEDRREEIEEL 389
Query: 394 QGEMTRLTQENESA---KEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 450
+ E+ L + A ++ + R + ++L+ L +A+E V+E L
Sbjct: 390 EEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALL 449
Query: 451 EE-------LAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQK 503
E V + +E + E L EL + + L++ +D+ +
Sbjct: 450 EAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVE-AE 508
Query: 504 KRINEMLTN--LLKDLCEIGLVIGSEGDMKVTS--DGAGKLEEEFTVARLYISKMKWRNG 559
RI + L++L E + + A +LE E R ++ +
Sbjct: 509 DRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAE 568
Query: 560 ETVK-----EDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSL--------- 605
E + + L + ++ I ++L AI + + L
Sbjct: 569 EAREEVAELNSKLAELKERIESLERIR--------TLLAAIADAEDEIERLREKREALAE 620
Query: 606 -SNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERR 664
++E R++L E+RER + E DE ++++ ++ E+ +EQ V + +E R
Sbjct: 621 LNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQ-------VEEKLDELR 673
Query: 665 EQARKDLKGLEDTVTKELQTLHNLRK 690
E+ R DL+ V EL+ L LR+
Sbjct: 674 EE-RDDLQAEIGAVENELEELEELRE 698
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 40.4 bits (95), Expect = 0.004
Identities = 51/279 (18%), Positives = 101/279 (36%), Gaps = 12/279 (4%)
Query: 242 LVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNERRE-QARKDLKGLEDTVTKELQT 300
L R E + K + E++L + L+ +R E +AR LK + +
Sbjct: 605 LRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQNE 664
Query: 301 LHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNA 360
+L+ + R +++ T D Q+ +FLE D + A
Sbjct: 665 QQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDDF---RELRTERLA 721
Query: 361 DLRCELPKLEKRLRATMERV-KLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTAR 419
+ +L+ +L + T A+ ++L+ + R + VKEL +
Sbjct: 722 KWQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQYDRELASLDVDPNTVKEL----K 777
Query: 420 RDYEQLQGEMTRLTQENESAKEE---VKEVLQALEELAVNYDQKSQEVETKNKEFETLTE 476
R E+L+ + R+ +E ++E + L + ++ E L +
Sbjct: 778 RQIEELETTIERIAVRRPEVREYRAFMQETWLHRDSLREERPNLAIQLRELESSAEELQQ 837
Query: 477 ELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLK 515
ELT +L+Q + Q +++E+L L
Sbjct: 838 ELTRLIKDTKLRRKKLEQERKALEKQLDQLDELLRGLRD 876
Score = 36.2 bits (84), Expect = 0.073
Identities = 40/183 (21%), Positives = 75/183 (40%), Gaps = 19/183 (10%)
Query: 281 EQARKDLKGLEDT---VTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQK 337
E+ L L V ++ + L K ++ + + + A E D A +
Sbjct: 362 EEVEARLDALTGKHQDVQRKYERLKQKIKEQLERDLEKNNERLAAIREEKDRQKAAIEED 421
Query: 338 ISFLENNL-DQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGE 396
+ LE+ L QL + + +L L +L++RL + TA + E
Sbjct: 422 LQALESQLRQQLEAGKLEFNEEEYELELRLGRLKQRLDSA--------TATPE------E 467
Query: 397 MTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVN 456
+ +L N+ A E+ +E A + EQLQ E+ +L + + A E ++ + L +L
Sbjct: 468 LEQLEI-NDEALEKAQEEQEQAEANVEQLQSELRQLRKRRDEALEALQRAERRLLQLRQA 526
Query: 457 YDQ 459
D+
Sbjct: 527 LDE 529
Score = 32.7 bits (75), Expect = 0.80
Identities = 38/225 (16%), Positives = 87/225 (38%), Gaps = 23/225 (10%)
Query: 256 EHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTL----HNLRKLF--V 309
+ +E E + +L R QA+ LK L+ +EL +L + +++L +
Sbjct: 721 AKWQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQYDRELASLDVDPNTVKELKRQI 780
Query: 310 QDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKL 369
++L+ I++ + + ++L D L + L +L +L
Sbjct: 781 EELETTIER---IAVRRPEVREYRAFMQETWLH--RDSLREERPNLAIQLRELESSAEEL 835
Query: 370 EKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEM 429
++ L T +D + + ++ + + E +++ EL+ R + QL
Sbjct: 836 QQEL----------TRLIKDTKLRRKKLEQERKALEKQLDQLDELLRGLRDEMRQLAEL- 884
Query: 430 TRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETL 474
+ A+ + E L LEE + S +++ + F+ +
Sbjct: 885 -KEPANANQAEGSISERLDQLEEFKRKRKRLSGDLKKFLERFDGV 928
Score = 32.7 bits (75), Expect = 0.94
Identities = 51/291 (17%), Positives = 106/291 (36%), Gaps = 30/291 (10%)
Query: 386 ARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKE 445
A R +++ E+ +L ++ E L + + + +E + AK +++
Sbjct: 237 ALRAIQKVAPEIEKLQEDFEQLLSLELRLQHLHG-ELVADEERLAEEQEERQEAKNRLRQ 295
Query: 446 VLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKR 505
L+ LE DQ + + N+E +L ++ L + +D Q +
Sbjct: 296 QLRTLE------DQLKEARDELNQELSAANAKLAADRSELELLEDQKGAFEDADIEQLQA 349
Query: 506 INEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKED 565
+ L ++ +L E+ E + + ++ ++ + I + R+ E E
Sbjct: 350 DLDQLPSIRSELEEV------EARLDALTGKHQDVQRKYERLKQKIKEQLERDLEKNNE- 402
Query: 566 EQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLD 625
+ + D + A S L +G NEE +LE RL Q+LD
Sbjct: 403 RLAAIREEKDRQKAAIEEDLQALESQLRQQLEAGK---LEFNEEEYELELRLGRLKQRLD 459
Query: 626 EKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQARKDLKGLED 676
+ + EQ+ +E + E +EQA +++ L+
Sbjct: 460 --------SATATPEELEQLEINDE-----ALEKAQEEQEQAEANVEQLQS 497
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 40.1 bits (94), Expect = 0.005
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
Query: 357 RDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELIT 416
R+ + KLE+ + E + +R+ E+L+ E+ +L E E + EV++ +
Sbjct: 415 REITVYEKRIKKLEETVERLEEENSEL---KRELEELKREIEKLESELERFRREVRDKVR 471
Query: 417 TARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTE 476
R+ + RL +E E K+ V+E+ + L EL + T K E LT
Sbjct: 472 K-DREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLELSGKGTPVKVVEKLTL 530
Query: 477 EL 478
E
Sbjct: 531 EA 532
Score = 37.0 bits (86), Expect = 0.035
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 313 QARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKR 372
+ R K+ EE + ++I LE +++L + + +L R+ +L+ E+ KLE
Sbjct: 402 RPREKEGTEEEERREIT---VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESE 458
Query: 373 LRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKEL 414
L V+ R+ + RL +E E K+ V+EL
Sbjct: 459 LERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEEL 500
Score = 37.0 bits (86), Expect = 0.038
Identities = 42/239 (17%), Positives = 100/239 (41%), Gaps = 12/239 (5%)
Query: 398 TRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNY 457
+E E +EE + IT + ++L+ + RL +EN K E++E+ + +E+L
Sbjct: 400 EERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESEL 459
Query: 458 DQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDL 517
++ +EV K ++ E+ + + EL++ K ++++ E+ ++ L
Sbjct: 460 ERFRREVRDKVRK----DREIRARDRRIERLEKELEEKKKRVEELERKLAELRK--MRKL 513
Query: 518 CEIGLVIGSEGDMKVTSDGAGKLEEEFTVAR---LYI---SKMKWRNGETVKEDEQVNLA 571
G + K+T + + EEE+ + + + S R E + + + +
Sbjct: 514 ELSGKGTPVKVVEKLTLEAIEEAEEEYGIKEGDVILVEDPSGGGARTAEELIDKKPRAII 573
Query: 572 DPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEE 630
+M+ + A +LP + L + + ++L E ++ +E++
Sbjct: 574 RGEEMSHAAAEEFFKNEIPVLPEGDVQIIRLDEFAVVDSEELRRAIEEWKKRFEERERR 632
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 40.0 bits (94), Expect = 0.005
Identities = 32/273 (11%), Positives = 98/273 (35%), Gaps = 57/273 (20%)
Query: 259 KAIEYEKELGETRLLLQT---NERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQAR 315
+ ++ + + + ++ E+R++ +++ ++ + ++ ++ + L
Sbjct: 184 QTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEE-LTDE 242
Query: 316 IKKSVTAEESEDDGGSLAQ-RQKISFLENNLDQLTKVHKQLVRDNA-------DLRCELP 367
+ V + ED +L + + +++ ++Q KV K + +
Sbjct: 243 LLNLV--MDIEDPSAALNKLNTAAAKIKSKIEQFQKVIK-MYEKGGVCPTCTQQISEGPD 299
Query: 368 KLEK---RLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQ 424
++ K +L+ ++ + TA + E++ E +++ + +
Sbjct: 300 RITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKK-----------LLELKNKIST 348
Query: 425 LQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTT 484
+ + L + + K +EEL + ++E+ E + +
Sbjct: 349 NKQSLITLVDKAKKVKAA-------IEELQAEFVDNAEELAKLQDELDKI---------- 391
Query: 485 LNTTSTELQQIKDMSNHQKKR-INEMLTNLLKD 516
+K S K++ ++T+LLKD
Sbjct: 392 ----------VKTKSELVKEKYHRGIVTDLLKD 414
Score = 31.1 bits (71), Expect = 2.1
Identities = 37/214 (17%), Positives = 82/214 (38%), Gaps = 46/214 (21%)
Query: 331 SLAQRQKISFLENNLD-----QLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITT 385
S R+K+ +E+ LD ++ K++K +R+ ++ L+ ++ +++K
Sbjct: 148 SAPARRKL--VEDLLDISVLSEMDKLNKDKIRELNQ---QIQTLDMKIDHIQQQIKT--- 199
Query: 386 ARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKE 445
Y + E + EN + K+ + + ++ E+ LT E + ++++
Sbjct: 200 ----YNKNIEEQRKKNGENIARKQNK---YDELVEEAKTIKAEIEELTDELLNLVMDIED 252
Query: 446 VLQALEELAVNYDQKSQEVETKNKEFETLTE--------------------------ELT 479
AL +L + ++E K + + EL
Sbjct: 253 PSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQ 312
Query: 480 LKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNL 513
L+T EL++I D N Q K++ E+ +
Sbjct: 313 HSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKI 346
>gnl|CDD|114219 pfam05483, SCP-1, Synaptonemal complex protein 1 (SCP-1).
Synaptonemal complex protein 1 (SCP-1) is the major
component of the transverse filaments of the
synaptonemal complex. Synaptonemal complexes are
structures that are formed between homologous
chromosomes during meiotic prophase.
Length = 787
Score = 40.1 bits (93), Expect = 0.005
Identities = 57/292 (19%), Positives = 136/292 (46%), Gaps = 17/292 (5%)
Query: 262 EYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVT 321
E +K L E LL ++ E+ ++LKG E + LQ R+ + DL+ ++ T
Sbjct: 409 ELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQA----REKEIHDLEIQLTAIKT 464
Query: 322 AEE----SEDDGGSLAQRQKISFLE--NNLDQLTKVHKQLVRDNADLRCELPKLEKRLRA 375
+EE +D + +++K+ +E + D+L +K+L ++ +D+ EL K ++ +
Sbjct: 465 SEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIIN 524
Query: 376 TMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQE 435
++ + + + E L+ + L E ES +EE + + ++ + + E
Sbjct: 525 CKKQEERML---KQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYE 581
Query: 436 NESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQI 495
++++K + L + K++ +E ++E + L ++ + + LN ++ ++
Sbjct: 582 VLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKL 641
Query: 496 KDMSNHQKKRINEMLTNLLKDLCEIGL----VIGSEGDMKVTSDGAGKLEEE 543
+ K++ E++ N K++ + + ++ K +D A KL++E
Sbjct: 642 ELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKE 693
Score = 31.2 bits (70), Expect = 2.5
Identities = 64/264 (24%), Positives = 107/264 (40%), Gaps = 11/264 (4%)
Query: 255 EEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQA 314
EE+KK I +KE + LL+Q E+ E KDL L + + L KL ++L+
Sbjct: 229 EEYKKEIN-DKEKQVSLLLIQITEK-ENKMKDLTFLLEESRDKANQLEEKTKLQDENLKE 286
Query: 315 RIKKSVTAEESEDDGGSLAQRQKIS--FLENNLDQLTKVHKQLVRDNADLRCELPKLEKR 372
I+K + +D QR + LE +L TK QL + EL K +
Sbjct: 287 LIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAA 346
Query: 373 LRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRL 432
+ + T + E+ R Q+ E+ ++IT + EMT+
Sbjct: 347 HSFVVTEFEATTCSLE-------ELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKF 399
Query: 433 TQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTEL 492
E EE+K++L E+L Q + E + + L L ++ ++ +L
Sbjct: 400 KNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQL 459
Query: 493 QQIKDMSNHQKKRINEMLTNLLKD 516
IK H K + ++ T L K+
Sbjct: 460 TAIKTSEEHYLKEVEDLKTELEKE 483
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 39.8 bits (94), Expect = 0.005
Identities = 27/129 (20%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 381 KLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAK 440
I A + +++ L + + A+ KE + A+ + +L+ E +E +
Sbjct: 31 AKIKEAEEEAKRI------LEEAKKEAEAIKKEALLEAKEEIHKLRNE---FEKELRERR 81
Query: 441 EEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSN 500
E++++ + L + N D+K + +E + +E E +EL KQ L EL+++ +
Sbjct: 82 NELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQL 141
Query: 501 HQKKRINEM 509
+ +RI+ +
Sbjct: 142 QELERISGL 150
Score = 39.0 bits (92), Expect = 0.008
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 407 AKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVET 466
AKEE+ +L ++ + + E+ +L + +E + L+ LE+ ++K +E+E
Sbjct: 62 AKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQ 121
Query: 467 KNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRI 506
K +E E EEL EL++I ++ + K I
Sbjct: 122 KQQELEKKEEELEELIEEQL---QELERISGLTAEEAKEI 158
Score = 31.3 bits (72), Expect = 1.8
Identities = 36/173 (20%), Positives = 72/173 (41%), Gaps = 45/173 (26%)
Query: 253 QAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDL 312
+ E HK E+EKEL E R LQ E+R + E+ + ++L+ L +
Sbjct: 63 KEEIHKLRNEFEKELRERRNELQKLEKRLLQK------EENLDRKLELL--------EKR 108
Query: 313 QARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKR 372
+ ++K + +++ + L++ + ++L+ + +L +LE+
Sbjct: 109 EEELEK---------------KEKELEQKQQELEKKEEELEELIEE------QLQELERI 147
Query: 373 LRATMERVK--LITTARRDYEQLQGEMTRLTQENES-----AKEEVKELITTA 418
T E K L+ E+ + E L +E E A ++ KE++ A
Sbjct: 148 SGLTAEEAKEILLEKVE---EEARHEAAVLIKEIEEEAKEEADKKAKEILAQA 197
Score = 31.3 bits (72), Expect = 1.8
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 13/100 (13%)
Query: 357 RDNADLRCELPKLEKRLRATMERVK----LITTARRDYEQLQGEMTRLTQENESAKEEVK 412
++ + R EL KLEKRL E + L+ + E+ + E+ + QE E +EE++
Sbjct: 75 KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELE 134
Query: 413 ELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 452
ELI ++ E++ G LT E AKE +L+ +EE
Sbjct: 135 ELIEEQLQELERISG----LTAEE--AKE---ILLEKVEE 165
Score = 31.3 bits (72), Expect = 2.1
Identities = 18/86 (20%), Positives = 42/86 (48%), Gaps = 15/86 (17%)
Query: 606 SNEERQKLEEERERLYQ---QLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNE 662
E R +L++ +RL Q LD K E + ++ + EK ++++ ++++
Sbjct: 77 LRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQEL---------- 126
Query: 663 RREQARKDLKGLEDTVTKELQTLHNL 688
E+ ++L+ L + +EL+ + L
Sbjct: 127 --EKKEEELEELIEEQLQELERISGL 150
Score = 29.7 bits (68), Expect = 5.6
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 358 DNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRL---TQENESAKEEVKEL 414
+ A E K E L A E KL ++ + + E+ +L + E + EL
Sbjct: 45 EEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLEL 104
Query: 415 ITTARRDYEQLQGEMTRLTQENESAKEEVK----EVLQALEELA 454
+ + E+ + E+ + QE E +EE++ E LQ LE ++
Sbjct: 105 LEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERIS 148
>gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA;
Provisional.
Length = 569
Score = 39.4 bits (93), Expect = 0.006
Identities = 38/182 (20%), Positives = 87/182 (47%), Gaps = 23/182 (12%)
Query: 340 FLENNLD-QLTKVHKQLVRDNADL-RCELPKLEKRLRATMERVKLITTARRDYEQLQGEM 397
+++ ++ + +Q+ + A L +L + E++ ER+ + Y+ L+ E+
Sbjct: 249 LDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQL------YDILEREV 302
Query: 398 TRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQE---NESAKEEVKEVLQALEELA 454
+ E + + + + A+ ++L+ E+ R+ Q NES E V+++ + LE L
Sbjct: 303 KA-RKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLE 361
Query: 455 VNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLL 514
YD+ ++ + + + L EE L +L++I+ ++++++EML L
Sbjct: 362 KQYDEITERIAEQEIAYSELQEE-------LEEILKQLEEIEK----EQEKLSEMLQGLR 410
Query: 515 KD 516
KD
Sbjct: 411 KD 412
Score = 31.0 bits (71), Expect = 2.5
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 14/82 (17%)
Query: 410 EVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE-----LAVNY------- 457
E++ L+ D EQ+ E+ L + E +EEV+++ E LA +
Sbjct: 109 EIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALD 168
Query: 458 --DQKSQEVETKNKEFETLTEE 477
+++ + +E + +F LTE
Sbjct: 169 ELEKQLENLEEEFSQFVELTES 190
Score = 31.0 bits (71), Expect = 2.9
Identities = 34/144 (23%), Positives = 56/144 (38%), Gaps = 31/144 (21%)
Query: 384 TTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQEN------- 436
AR +QL+ E+ L Q E E +KEL T ++L+ L +E
Sbjct: 194 VEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLD 253
Query: 437 -----ESAKEEVKEVLQALEELAVN----------------YDQKSQEVETKN---KEFE 472
+ KE++ E L LEEL ++ YD +EV+ + K +
Sbjct: 254 IEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSD 313
Query: 473 TLTEELTLKQTTLNTTSTELQQIK 496
TL + L + E+ ++K
Sbjct: 314 TLPDFLEHAKEQNKELKEEIDRVK 337
>gnl|CDD|113356 pfam04582, Reo_sigmaC, Reovirus sigma C capsid protein.
Length = 326
Score = 38.7 bits (90), Expect = 0.007
Identities = 29/153 (18%), Positives = 55/153 (35%), Gaps = 18/153 (11%)
Query: 404 NESAKEEVKELI-------TTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVN 456
S + EV LI T D + +T L S E V + L +L+ +
Sbjct: 5 TPSQRREVVGLILSLTSSVTINPGDLTPIYERLTNLESATASLSESVSTISSRLSDLSAD 64
Query: 457 YDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEM------- 509
+ ++ L + QT++++ S+EL + + I+++
Sbjct: 65 LQDMTTSLDDAKATLNGLITTVQALQTSVDSLSSELADLSLTVSAHDAAISDLQTTVHAN 124
Query: 510 ---LTNLLKDLCEIGLVIGS-EGDMKVTSDGAG 538
++NL + GL I E +K G+
Sbjct: 125 STDISNLKSSVSANGLNITDLEQRVKSLESGSS 157
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 39.1 bits (92), Expect = 0.008
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 17/140 (12%)
Query: 371 KRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQ----LQ 426
K A ++I A+++ E L+ E AKEEV +L R+ ++ LQ
Sbjct: 26 KLGSAEELAKRIIEEAKKEAETLKKEALL------EAKEEVHKLRAELERELKERRNELQ 79
Query: 427 GEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLN 486
RL Q E+ +++ + + E L ++K +E+ K K + EEL + +
Sbjct: 80 RLERRLLQREETLDRKMESLDKKEENL----EKKEKELSNKEKNLDEKEEEL---EELIA 132
Query: 487 TTSTELQQIKDMSNHQKKRI 506
EL++I ++ + K I
Sbjct: 133 EQREELERISGLTQEEAKEI 152
Score = 37.2 bits (87), Expect = 0.030
Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 19/147 (12%)
Query: 333 AQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATME----RVKLITTARR 388
A+ K L +++ K+ +L R+ + R EL +LE+RL E +++ +
Sbjct: 45 AETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEE 104
Query: 389 DYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQE-----------NE 437
+ E+ + E++ + + +EE++ELI R + E++ G LTQE E
Sbjct: 105 NLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISG----LTQEEAKEILLEEVEEE 160
Query: 438 SAKEEVKEVLQALEELAVNYDQKSQEV 464
+ E K + + EE D+K++E+
Sbjct: 161 ARHEAAKLIKEIEEEAKEEADKKAKEI 187
Score = 33.4 bits (77), Expect = 0.43
Identities = 40/193 (20%), Positives = 78/193 (40%), Gaps = 25/193 (12%)
Query: 275 QTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQ 334
++ A + K + + KE +TL L ++ +++ + E E +
Sbjct: 22 IAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKE-------R 74
Query: 335 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQ 394
R ++ LE L Q + L R L + LEK+ + + K + E+L+
Sbjct: 75 RNELQRLERRLLQRE---ETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKE---EELE 128
Query: 395 GEMTRLTQENESA----KEEVKELITTARRDYEQLQGEMTRLTQENES-AKEEVKE---- 445
+ +E E +EE KE++ E+ + E +L +E E AKEE +
Sbjct: 129 ELIAEQREELERISGLTQEEAKEILLEEVE--EEARHEAAKLIKEIEEEAKEEADKKAKE 186
Query: 446 -VLQALEELAVNY 457
+ A++ A ++
Sbjct: 187 ILATAIQRYAGDH 199
Score = 31.0 bits (71), Expect = 2.3
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Query: 405 ESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEV 464
SA+E K +I A+++ E L+ E AKEEV ++ LE + Q +
Sbjct: 28 GSAEELAKRIIEEAKKEAETLKKEALL------EAKEEVHKLRAELERELKERRNELQRL 81
Query: 465 ETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEM 509
E + + E E L K +L+ L++ + ++++K ++E
Sbjct: 82 ERRLLQRE---ETLDRKMESLDKKEENLEKKEKELSNKEKNLDEK 123
Score = 29.9 bits (68), Expect = 5.2
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 607 NEERQKLEEERERLYQQLDEKDEEI-NQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERRE 665
E K EE E+ ++L K++ + ++ + E + EQ E E +SGL +E
Sbjct: 96 MESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGL--------TQE 147
Query: 666 QARKD-LKGLEDTVTKELQTL 685
+A++ L+ +E+ E L
Sbjct: 148 EAKEILLEEVEEEARHEAAKL 168
Score = 29.5 bits (67), Expect = 7.5
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 15/85 (17%)
Query: 607 NEERQKLEEERERLYQQ---LDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNER 663
E R +L+ RL Q+ LD K E ++++ + EK ++++ +E+ +E+
Sbjct: 72 KERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEK--------NLDEK 123
Query: 664 REQARKDLKGLEDTVTKELQTLHNL 688
E+ L+ L +EL+ + L
Sbjct: 124 EEE----LEELIAEQREELERISGL 144
>gnl|CDD|219176 pfam06785, UPF0242, Uncharacterized protein family (UPF0242).
Length = 401
Score = 38.7 bits (90), Expect = 0.008
Identities = 31/166 (18%), Positives = 72/166 (43%), Gaps = 13/166 (7%)
Query: 369 LEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEE---VKELITTARRDYEQL 425
L+ ++R E+ + + R E+ Q E +L +N+ + + + + Y++L
Sbjct: 73 LQTKIRKLTEQDEGLRNIRESIEERQKESDQLKLQNQKLVNQLGHARGVFIKTKGRYQKL 132
Query: 426 QGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTL 485
+ L +EN+ + ++ ++Q E K +E + N+E L E L +Q
Sbjct: 133 EELSRHLKEENQCLQIQLDALVQECNE-------KIEENQELNRE---LAETLAYQQELN 182
Query: 486 NTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMK 531
+ + +M + ++ I ++ + +CEI ++ E +K
Sbjct: 183 DEYQATFVEQHNMLDKRQAYIGKLEAKVQDLMCEIRNLLQLESGIK 228
>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein. This domain is found
in cell division proteins which are required for
kinetochore-spindle association.
Length = 312
Score = 37.7 bits (88), Expect = 0.015
Identities = 27/132 (20%), Positives = 59/132 (44%), Gaps = 2/132 (1%)
Query: 383 ITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQ-ENESAKE 441
+ + DY+ L E+ L ++ L R +QL+ E+ E + AKE
Sbjct: 153 LEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELR-QLKQLEDELEDCDPTELDRAKE 211
Query: 442 EVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNH 501
++K++LQ + ++ +E++ + E LT + + T + +L+Q + +
Sbjct: 212 KLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFK 271
Query: 502 QKKRINEMLTNL 513
+ +++ E L L
Sbjct: 272 EIEKLKEQLKLL 283
Score = 33.5 bits (77), Expect = 0.38
Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
Query: 341 LENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQL-QGEMTR 399
L+ NL+ L + +K L+++ L PKL R A E ++ + + E E+ R
Sbjct: 149 LDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDR 208
Query: 400 LTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEL 453
++ + +E+ + E+L+ E+ L + E + E+ + E
Sbjct: 209 AKEKLKKLLQEIMIK----VKKLEELEEELQELESKIEDLTNKKSELNTEIAEA 258
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 38.3 bits (90), Expect = 0.018
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 440 KEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKD-M 498
KE++ E++ +LEEL +QK++E E KE E L EEL K +LQ+ +D +
Sbjct: 515 KEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEK-------KEKLQEEEDKL 567
Query: 499 SNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEE 543
+K + + K+ EI + S A +L E
Sbjct: 568 LEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEA 612
Score = 34.4 bits (80), Expect = 0.26
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Query: 607 NEERQKLEEERERLYQQLDEKDEEIN---------QQSQYAEKLKEQIMEQEEVSGLLVC 657
EE + L +E E+L ++L+EK E++ + + + +KE E +E+ L
Sbjct: 536 AEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQ 595
Query: 658 GQTNERREQARKDLK 672
Q +L
Sbjct: 596 LQKGGYASVKAHELI 610
Score = 31.0 bits (71), Expect = 2.4
Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 20/129 (15%)
Query: 228 ARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGET-RLLLQTNERREQARKD 286
A+ I + K ++ L+A S+E + E +KA E E L E +L + E++E+
Sbjct: 507 AKKLIGEDKEKLNELIA---SLEELERELEQKAEEAEALLKEAEKLKEELEEKKEK---- 559
Query: 287 LKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLD 346
L++ K L+ ++ Q IK++ +E+++ L Q QK +
Sbjct: 560 ---LQEEEDKLLEEAE-------KEAQQAIKEA--KKEADEIIKELRQLQKGGYASVKAH 607
Query: 347 QLTKVHKQL 355
+L + K+L
Sbjct: 608 ELIEARKRL 616
Score = 29.4 bits (67), Expect = 9.2
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 611 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQARKD 670
LEE L Q+ +E + + + + E+L+E+ + +E L+ E + QA K+
Sbjct: 523 ASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQ-QAIKE 581
Query: 671 LKGLEDTVTKELQTLHNLRKLFVQDQVTSSQR 702
K D + KEL+ L V+ R
Sbjct: 582 AKKEADEIIKELRQLQKGGYASVKAHELIEAR 613
>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional.
Length = 535
Score = 37.9 bits (88), Expect = 0.020
Identities = 39/170 (22%), Positives = 84/170 (49%), Gaps = 15/170 (8%)
Query: 373 LRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRL 432
L A E V L A RD E ++ R ++ + KE + E AR+ E+++
Sbjct: 38 LNAEQEAVNLRGKAERDAEHIKKTAKRESKALK--KELLLEAKEEARKYREEIE------ 89
Query: 433 TQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTEL 492
QE +S ++E+K++ L E A + D+K + + +K K E+ + LT K ++ ++
Sbjct: 90 -QEFKSERQELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQV 148
Query: 493 QQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEE 542
+++++ + +R+ + ++ +I +E + K+T + A ++ E
Sbjct: 149 EKLEEQKKAELERVAALSQAEARE------IILAETENKLTHEIATRIRE 192
Score = 36.0 bits (83), Expect = 0.066
Identities = 39/165 (23%), Positives = 79/165 (47%), Gaps = 25/165 (15%)
Query: 372 RLRATMERVKLITTARRDYEQLQGE-MTRLTQENESAKEEVKELITTARRDYEQLQGEMT 430
R +A + + TA+R+ + L+ E + +E +EE+++ + R++ +Q++ +
Sbjct: 48 RGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQIE---S 104
Query: 431 RLTQ---------ENESAKEEVKEVL-QALEELAVNYDQKSQEVET----KNKEFETLTE 476
RLT+ EN S+KE+ E Q+L + + + D++ ++VE K E E +
Sbjct: 105 RLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAA 164
Query: 477 -------ELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLL 514
E+ L +T T +I++ K R ++M +LL
Sbjct: 165 LSQAEAREIILAETENKLTHEIATRIREAEREVKDRSDKMAKDLL 209
>gnl|CDD|115307 pfam06637, PV-1, PV-1 protein (PLVAP). This family consists of
several PV-1 (PLVAP) proteins which seem to be specific
to mammals. PV-1 is a novel protein component of the
endothelial fenestral and stomatal diaphragms. The
function of this family is unknown.
Length = 442
Score = 37.3 bits (86), Expect = 0.025
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 34/164 (20%)
Query: 339 SFLENNLDQLT-KVHKQLVRDNADLR--CE---------LPKLEKRLRATMERVKLITTA 386
S + +LD L +H L + A +R C+ + +L + LRA +ERV
Sbjct: 244 SIIPRSLDNLGYNLHHPLGPELASIRRACDHLPGIMSSKIEELARGLRADIERVA----- 298
Query: 387 RRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEV 446
R+ LQ + Q ++A+E + A+ +LQ E R TQ
Sbjct: 299 -RENADLQRQKLEAEQAAQAAQEAKAKAEKEAQAREAKLQAECARQTQ------------ 345
Query: 447 LQALEELAV---NYDQKSQEVETKNKEFETLTEELTLKQTTLNT 487
ALEE A D ++E+E K +E E L EL ++ + L+T
Sbjct: 346 -LALEEKAALRAERDNLAKELEAKKREAEQLRMELAIRISALDT 388
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil motif
at the N terminus region. Yeast cells with mutant Atg14
are defective not only in autophagy but also in sorting
of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the
autophagic process and in the vacuolar protein sorting
pathway. Apg14p may be a component specifically required
for the function of Apg6/Vps30p through the autophagic
pathway. There are 17 auto-phagosomal component proteins
which are categorized into six functional units, one of
which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The
AS-PI3K complex and the Atg2-Atg18 complex are essential
for nucleation, and the specific function of the AS-PI3K
apparently is to produce phosphatidylinositol
3-phosphate (PtdIns(3)P) at the pre-autophagosomal
structure (PAS). The localisation of this complex at the
PAS is controlled by Atg14. Autophagy mediates the
cellular response to nutrient deprivation, protein
aggregation, and pathogen invasion in humans, and
malfunction of autophagy has been implicated in multiple
human diseases including cancer. This effect seems to be
mediated through direct interaction of the human Atg14
with Beclin 1 in the human phosphatidylinositol 3-kinase
class III complex.
Length = 307
Score = 36.6 bits (85), Expect = 0.041
Identities = 28/129 (21%), Positives = 60/129 (46%), Gaps = 20/129 (15%)
Query: 386 ARRDYEQLQGEMTRLTQENESAKEEVKELITTA-------------------RRDYEQLQ 426
AR +L+ ++ RL ENE K++V+E + A + Q++
Sbjct: 18 ARNSLYELRLDLARLLLENEELKQKVEEALEGATNEDGKLAADLLKLEVARKKERLNQIR 77
Query: 427 GEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETK-NKEFETLTEELTLKQTTL 485
+++L +E E +E ++E+ +AL + + S ++E + + E L +E+ ++ L
Sbjct: 78 ARISQLKEEIEQKRERIEELKRALAQRRSDLSSASYQLEKRRASQLEKLQDEIKRTRSKL 137
Query: 486 NTTSTELQQ 494
N + L +
Sbjct: 138 NALHSLLAE 146
Score = 28.9 bits (65), Expect = 8.4
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 609 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQAR 668
E + +E ++ ++ + EEI Q+ + E+LK + ++ R Q
Sbjct: 65 EVARKKERLNQIRARISQLKEEIEQKRERIEELKRALAQRRSDLSSASYQLEKRRASQLE 124
Query: 669 KDLKGLEDTVTKELQTLHNLR 689
K ++ T +K L LH+L
Sbjct: 125 KLQDEIKRTRSK-LNALHSLL 144
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 37.0 bits (85), Expect = 0.044
Identities = 67/322 (20%), Positives = 132/322 (40%), Gaps = 25/322 (7%)
Query: 190 SEKVSKTGAEGTVLDEAKNINKSLSADGAGKLEEEFTVARLYISKMKSEVKNLVARCTSM 249
+++ K DEAK ++ AD A K EE +K E K +
Sbjct: 1499 ADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEE---------AKKADEAKK------AE 1543
Query: 250 ESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFV 309
E +A+E KKA E +K E + + + E L+ E+ E + + KL+
Sbjct: 1544 EKKKADELKKAEELKKA-EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYE 1602
Query: 310 QDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCE---- 365
++ + + +++ AEE++ L + ++ + ++QL K + + +L+
Sbjct: 1603 EEKKMKAEEAKKAEEAKIKAEELKKAEEE---KKKVEQLKKKEAEEKKKAEELKKAEEEN 1659
Query: 366 LPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAK--EEVKELITTARRDYE 423
K + + E K A++ E + L +E E AK EE+K+ ++ E
Sbjct: 1660 KIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAE 1719
Query: 424 QLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQT 483
+L+ + E AK+E +E + EE + ++K + K +E + E K+
Sbjct: 1720 ELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEA 1779
Query: 484 TLNTTSTELQQIKDMSNHQKKR 505
+ E + + M +K +
Sbjct: 1780 VIEEELDEEDEKRRMEVDKKIK 1801
>gnl|CDD|225747 COG3206, GumC, Uncharacterized protein involved in
exopolysaccharide biosynthesis [Cell envelope
biogenesis, outer membrane].
Length = 458
Score = 36.3 bits (84), Expect = 0.052
Identities = 38/214 (17%), Positives = 79/214 (36%), Gaps = 15/214 (7%)
Query: 263 YEKELGETRLLLQTNERREQARK---------DLKGLEDTVTKELQTLHNLRKLFVQDLQ 313
++ L E R LQ E + + + + L + L T + + +
Sbjct: 200 LDERLEELRARLQEAEAQVEDFRAQHGLTDAARGQLLSEQQLSALNTQLQSARARLAQAE 259
Query: 314 ARIKKSVTAEESEDDGGSLAQR---QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLE 370
AR+ + + +L + I L Q+ + L + +L LE
Sbjct: 260 ARLASLLQLLPLGREAAALREVLESPTIQDLRQQYAQVRQQIADLSTELGAKHPQLVALE 319
Query: 371 KRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMT 430
+L R ++ R+ L E+ L Q+ + ++E+ +L +LQ ++
Sbjct: 320 AQLAEL--RQQIAAELRQILASLPNELALLEQQEAALEKELAQL-KGRLSKLPKLQVQLR 376
Query: 431 RLTQENESAKEEVKEVLQALEELAVNYDQKSQEV 464
L +E E+A+ + +LQ +EL++
Sbjct: 377 ELEREAEAARSLYETLLQRYQELSIQEASPIGNA 410
Score = 35.9 bits (83), Expect = 0.082
Identities = 42/251 (16%), Positives = 86/251 (34%), Gaps = 14/251 (5%)
Query: 250 ESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFV 309
S + + K A + L + L Q + E R+ D +EL+ +L
Sbjct: 160 LSYTSNDPKLAAKLANALAQAYLADQLEAQLEAFRRA-SDSLDERLEELR-----ARLQE 213
Query: 310 QDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKL 369
+ Q ++ G L+++Q N QL +L + A L L L
Sbjct: 214 AEAQVEDFRAQHGLTDAARGQLLSEQQLS---ALN-TQLQSARARLAQAEARLASLLQLL 269
Query: 370 EKRLRATMERV----KLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQL 425
A R I R+ Y Q++ ++ L+ E + ++ L +Q+
Sbjct: 270 PLGREAAALREVLESPTIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQI 329
Query: 426 QGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTL 485
E+ ++ + +++ ALE+ + ++ + L E ++
Sbjct: 330 AAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLY 389
Query: 486 NTTSTELQQIK 496
T Q++
Sbjct: 390 ETLLQRYQELS 400
Score = 30.9 bits (70), Expect = 2.6
Identities = 43/217 (19%), Positives = 73/217 (33%), Gaps = 21/217 (9%)
Query: 227 VARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKD 286
ARL ++ + E T Q ++ +L R L E R +
Sbjct: 208 RARLQEAEAQVEDFRAQHGLTDAARGQLLSEQQLSALNTQLQSARARLAQAEARLASLLQ 267
Query: 287 LKGLEDTVTKELQTLHNLRKLFVQDLQARI--KKSVTAEESEDDGGSLAQRQKISFLENN 344
L L + L + +QDL+ + + A+ S + G Q LE
Sbjct: 268 LLPLGREAAALREVLESPT---IQDLRQQYAQVRQQIADLSTELGAKHPQLVA---LEAQ 321
Query: 345 LDQLTKVHKQLVRDN-ADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQE 403
L +L + +R A L EL LE++ A + + + +LQ ++ L +E
Sbjct: 322 LAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELERE 381
Query: 404 NESAKEEVKELITTARRDYEQLQGEMTRLTQENESAK 440
AR YE L + E++
Sbjct: 382 -----------AEAARSLYETLLQRY-QELSIQEASP 406
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 36.5 bits (85), Expect = 0.065
Identities = 38/209 (18%), Positives = 86/209 (41%), Gaps = 19/209 (9%)
Query: 271 RLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKK-SVTAEESEDDG 329
R L + +Q R L+ ++ ++ + L L L + L R+++ +E+E+
Sbjct: 851 RALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADETLADRVEEIREQLDEAEEAK 910
Query: 330 GSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLIT--TAR 387
+ Q L+ + V + L+ + + ++ R ++ +T R
Sbjct: 911 RFVQQHGN---ALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQR 967
Query: 388 RD---YEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENE------- 437
R YE + + + NE ++ +++ R EQL+ +L Q N+
Sbjct: 968 RAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKS 1027
Query: 438 ---SAKEEVKEVLQALEELAVNYDQKSQE 463
+ ++ ++E+ Q L++L V D ++E
Sbjct: 1028 SYDAKRQMLQELKQELQDLGVPADSGAEE 1056
Score = 32.6 bits (75), Expect = 0.86
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 355 LVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKEL 414
+ + +LR EL ++L A R + R+ +L + L Q+ ++A + + L
Sbjct: 284 HLEEALELRRELYTSRRQLAAEQYR---LVEMARELAELNEAESDLEQDYQAASDHL-NL 339
Query: 415 ITTARRDYEQL---QGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVE 465
+ TA R E++ Q ++ L + E E V+E + EE + +EV+
Sbjct: 340 VQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVD 393
Score = 30.7 bits (70), Expect = 3.7
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 10/149 (6%)
Query: 323 EESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKL 382
E +L R+++ L ++ R+ A+L LE+ +A + + L
Sbjct: 280 ERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNL 339
Query: 383 ITTARRDYEQL---QGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESA 439
+ TA R E++ Q ++ L + E E V+E A E+ + +E +
Sbjct: 340 VQTALRQQEKIERYQADLEELEERLEEQNEVVEE----ADEQQEENEARAEAAEEEVDEL 395
Query: 440 KEEVKEVLQALEEL---AVNYDQKSQEVE 465
K ++ + QAL+ A+ Y Q Q +E
Sbjct: 396 KSQLADYQQALDVQQTRAIQYQQAVQALE 424
Score = 30.3 bits (69), Expect = 4.1
Identities = 41/163 (25%), Positives = 62/163 (38%), Gaps = 25/163 (15%)
Query: 362 LRCELPKLEKRLRATMERVKLITTARR-------DYEQLQGEMTRLTQENESAKEEVKEL 414
LR L +LE+RLR +L+ + D ++L+ L ES E V E
Sbjct: 518 LRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEA 577
Query: 415 I---TTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEF 471
R+ EQLQ + RL L A + LA +Q +E E
Sbjct: 578 RERRMALRQQLEQLQARIQRLAA-------RAPAWLAAQDALARLREQSGEEFEDS---- 626
Query: 472 ETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLL 514
+ +TE Q L EL +D +K+ ++E + L
Sbjct: 627 QDVTE---YMQQLL-ERERELTVERDELAARKQALDEEIERLS 665
>gnl|CDD|220785 pfam10498, IFT57, Intra-flagellar transport protein 57. Eukaryotic
cilia and flagella are specialised organelles found at
the periphery of cells of diverse organisms.
Intra-flagellar transport (IFT) is required for the
assembly and maintenance of eukaryotic cilia and
flagella, and consists of the bidirectional movement of
large protein particles between the base and the distal
tip of the organelle. IFT particles contain multiple
copies of two distinct protein complexes, A and B, which
contain at least 6 and 11 protein subunits. IFT57 is
part of complex B but is not, however, required for the
core subunits to stay associated. This protein is known
as Huntington-interacting protein-1 in humans.
Length = 355
Score = 35.8 bits (83), Expect = 0.077
Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 6/129 (4%)
Query: 387 RRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEV 446
R EQ+ +++ K+ +K+L + E++ L + E +E +E
Sbjct: 215 RSHLEQMHQLKKAISKSLPETKQYLKKLSQDLSKALEKISSREKHLNNQLEQLVQEYREA 274
Query: 447 LQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLN------TTSTELQQIKDMSN 500
+ L ++ Y+Q SQ V +E ++EEL + + + + L +IK
Sbjct: 275 RRTLSQVQEKYNQASQGVSELTRELNEISEELEQVKQEMEERGASMSDGSPLVKIKQAIT 334
Query: 501 HQKKRINEM 509
K+ I +M
Sbjct: 335 KLKEEIKQM 343
>gnl|CDD|149105 pfam07851, TMPIT, TMPIT-like protein. A number of members of this
family are annotated as being transmembrane proteins
induced by tumour necrosis factor alpha, but no
literature was found to support this.
Length = 330
Score = 35.5 bits (82), Expect = 0.086
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 425 LQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTT 484
+ E L +E + +E + Q LEE+ +Q + + + K + L +LK+
Sbjct: 2 CEEEWKELEKEFQQLQETHRLYKQKLEEVEKLQEQCTSAIARQRKRLKQLIV--SLKKLK 59
Query: 485 LNTTSTELQQIKDMSNHQKKRIN 507
+ T + + ++ + K+R N
Sbjct: 60 KSLTPEDSELVEQLEEQIKERKN 82
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family for
which functions are known are part of an exonuclease
complex with sbcD homologs. This complex is involved in
the initiation of recombination to regulate the levels
of palindromic sequences in DNA. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1042
Score = 35.7 bits (82), Expect = 0.11
Identities = 51/279 (18%), Positives = 96/279 (34%), Gaps = 41/279 (14%)
Query: 240 KNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNERREQARK-DLKGLEDTVTKEL 298
K A A K E + + + RL LQ + + L L+ T+T+E
Sbjct: 602 KLSEAEDMLACEQHALLRKLQPEQDLQ--DVRLHLQQCSQELALKLTALHALQLTLTQER 659
Query: 299 QTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRD 358
H L ++ L + S + +++ +QLT + L +
Sbjct: 660 VREHALS---IRVLPKELLASRQLALQK--------------MQSEKEQLTYWKEMLAQC 702
Query: 359 NADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTA 418
LR +E+ R E ++ D L ++ + +KEL+ A
Sbjct: 703 QTLLRELETHIEEYDREFNEIENASSSLGSD----------LAAREDALNQSLKELMHQA 752
Query: 419 RRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEEL 478
R L+ T+ + + EEV LQ EL+ + E++ N+ E T L
Sbjct: 753 R---TVLK----ARTEAHFNNNEEVTAALQTGAELS----HLAAEIQFFNRLREEDTHLL 801
Query: 479 TLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDL 517
+ + + I ++ + E + L++
Sbjct: 802 KTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEK 840
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase. This model represents the
seryl-tRNA synthetase found in most organisms. This
protein is a class II tRNA synthetase, and is recognized
by the pfam model tRNA-synt_2b. The seryl-tRNA
synthetases of two archaeal species, Methanococcus
jannaschii and Methanobacterium thermoautotrophicum,
differ considerably and are included in a different
model [Protein synthesis, tRNA aminoacylation].
Length = 418
Score = 35.0 bits (81), Expect = 0.14
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 338 ISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEM 397
L NN D V + L + +L KL ER KL++ E+LQ +
Sbjct: 4 RKLLRNNPD---LVKESLKARGLSVDIDLEKLIALDD---ERKKLLSEI----EELQAKR 53
Query: 398 TRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELA 454
L+++ AK + K+ I +++ ++L+ E+T L+ ++ + E+++ L ++ +
Sbjct: 54 NELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIP 110
Score = 29.3 bits (66), Expect = 7.3
Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 21/118 (17%)
Query: 371 KRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMT 430
K LR + VK AR + E +L ++ K+ + E+ E+LQ +
Sbjct: 5 KLLRNNPDLVKESLKARGLSVDIDLE--KLIALDDERKKLLSEI--------EELQAKRN 54
Query: 431 RLTQE-----------NESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEE 477
L+++ E K+E+KE+ + L EL+ E++ K + E
Sbjct: 55 ELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHE 112
>gnl|CDD|114855 pfam06160, EzrA, Septation ring formation regulator, EzrA. During
the bacterial cell cycle, the tubulin-like cell-division
protein FtsZ polymerises into a ring structure that
establishes the location of the nascent division site.
EzrA modulates the frequency and position of FtsZ ring
formation.
Length = 559
Score = 35.2 bits (82), Expect = 0.14
Identities = 62/316 (19%), Positives = 118/316 (37%), Gaps = 88/316 (27%)
Query: 347 QLTKVHKQLVRDNADL-RCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENE 405
+L + +Q+ ++ A L +L + E+ ER+ + Y+ L+ E+ + E
Sbjct: 253 ELQDLKEQIDQNLALLEELDLDEAEEENEEIEERIDTL------YDILEKEVKA-KKFVE 305
Query: 406 SAKEEVKELITTARRDYEQLQGEMTRLTQE---NESAKEEVKEVLQALEELAVNYDQKSQ 462
+++ + + AR +QL E+ RL Q NE E V+E+ + LEEL YDQ +
Sbjct: 306 KNIDKLTDFLEHAREQNKQLLLELDRLQQSYTLNEDELETVRELEKQLEELEAQYDQLVE 365
Query: 463 EVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGL 522
+ K + L EEL +L++I+ +++ ++E L L
Sbjct: 366 RIAEKKVAYSELQEEL-------EEIEKQLEEIEK----EQEELSESLQGL--------- 405
Query: 523 VIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDEQVNLADPVDMAASIAP 582
++ AR + + + + E + E+ NL
Sbjct: 406 ------------------RKDELEAREKLQEYRQKLHEIKRYLEKSNL------------ 435
Query: 583 TPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERL-----------------YQQLD 625
P +P L + ++E + L +E + + L
Sbjct: 436 ----------PGLPEDYLEYFFVVSDEIEALADELNEVPINMDAVNRQLEEATDDVETLK 485
Query: 626 EKDEEINQQSQYAEKL 641
EK EE+ + AE+L
Sbjct: 486 EKTEELVDNATLAEQL 501
Score = 31.0 bits (71), Expect = 2.5
Identities = 45/205 (21%), Positives = 96/205 (46%), Gaps = 17/205 (8%)
Query: 278 ERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQK 337
E+ +A+K ++ D +T L+ K + +L R+++S T E E + R+
Sbjct: 295 EKEVKAKKFVEKNIDKLTDFLEHAREQNKQLLLELD-RLQQSYTLNEDELE----TVRE- 348
Query: 338 ISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEM 397
LE L++L + QLV A+ + +L++ L ++++ I + E+L +
Sbjct: 349 ---LEKQLEELEAQYDQLVERIAEKKVAYSELQEELEEIEKQLEEIEK---EQEELSESL 402
Query: 398 TRLTQENESAKEEVKEL---ITTARRDYEQ--LQGEMTRLTQENESAKEEVKEVLQALEE 452
L ++ A+E+++E + +R E+ L G + +E++ + L E
Sbjct: 403 QGLRKDELEAREKLQEYRQKLHEIKRYLEKSNLPGLPEDYLEYFFVVSDEIEALADELNE 462
Query: 453 LAVNYDQKSQEVETKNKEFETLTEE 477
+ +N D ++++E + ETL E+
Sbjct: 463 VPINMDAVNRQLEEATDDVETLKEK 487
>gnl|CDD|214599 smart00283, MA, Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer). Thought to undergo
reversible methylation in response to attractants or
repellants during bacterial chemotaxis.
Length = 262
Score = 34.6 bits (80), Expect = 0.15
Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Query: 396 EMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAV 455
E+ +L + + + +E++ LI + + + M + E E E V+E ALEE+
Sbjct: 134 EVRKLAERSAESAKEIESLIKEIQEETNEAVAAMEESSSEVEEGVELVEETGDALEEIV- 192
Query: 456 NYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQI 495
+E+ +E T+E +N E+ Q+
Sbjct: 193 ---DSVEEIADLVQEIAAATDEQAAGSEEVNAAIDEIAQV 229
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 34.3 bits (79), Expect = 0.21
Identities = 36/231 (15%), Positives = 75/231 (32%), Gaps = 34/231 (14%)
Query: 273 LLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSL 332
+++ +Q +K++ LE + ++ L+ ++K
Sbjct: 33 AAADDKQLKQIQKEIAALEKKIREQQDQR--------AKLEKQLKS-------------- 70
Query: 333 AQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQ 392
+I+ LE L + K+L + ADL L LE + R +R +L
Sbjct: 71 -LETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQERE--QRRRLAEQLAALQRS 127
Query: 393 LQGEMTRLTQENESAKEEVKELI-----TTARRD----YEQLQGEMTRLTQENESAKEEV 443
+ L E A+ V+ I AR + + ++ + E + + E+
Sbjct: 128 GRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAEL 187
Query: 444 KEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQ 494
+L Q +E + + + K L + L+
Sbjct: 188 TTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKN 238
Score = 29.3 bits (66), Expect = 9.0
Identities = 27/222 (12%), Positives = 68/222 (30%), Gaps = 17/222 (7%)
Query: 250 ESSQAEEHKKAIEYEKELGETRL--------LLQTNERREQARKDLKGLEDTVTKELQTL 301
E E+ + + EK+L L++T + ++ RK + L +
Sbjct: 51 EKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110
Query: 302 HN--------LRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKIS-FLENNLDQLTKVH 352
L L V+ E+++ ++ +D L
Sbjct: 111 REQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATL 170
Query: 353 KQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVK 412
KQL A++ E +L L + + + ++ ++ ++ EE++
Sbjct: 171 KQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELR 230
Query: 413 ELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELA 454
+ + + + + + +A+ A +
Sbjct: 231 ANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEAKRT 272
>gnl|CDD|204831 pfam12137, RapA_C, RNA polymerase recycling family C-terminal.
This domain is found in bacteria. This domain is about
360 amino acids in length. This domain is found
associated with pfam00271, pfam00176. The function of
this domain is not known, but structurally it forms an
alpha-beta fold in nature with a central beta-sheet
flanked by helices and loops, the beta-sheet being
mainly antiparallel and flanked by four alpha helices,
among which the two longer helices exhibit a coiled-coil
arrangement.
Length = 362
Score = 34.1 bits (79), Expect = 0.23
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 368 KLEKRLRATMERV--KLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDY-EQ 424
L K+L KL+ R EQL L + + A+E+++E+I A++ +Q
Sbjct: 256 SLNKQLSPVNRHTARKLVKALRPQIEQL------LQKAEKLAEEQLEEIIEQAKQQMQQQ 309
Query: 425 LQGEMTRLT---QENESAKEEVKEVLQALEELAVNYDQKSQ 462
L E+ RL N + ++E E L+ E + K+Q
Sbjct: 310 LSAELARLKALKAVNPNIRDEEIEALEQQREELLTALDKAQ 350
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 34.7 bits (80), Expect = 0.23
Identities = 50/305 (16%), Positives = 103/305 (33%), Gaps = 51/305 (16%)
Query: 251 SSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQ 310
+ K+ +KE + LQ+ +R E A + L+ L+ V K + +L +
Sbjct: 852 GRSLKAKKRFSLLKKET----IYLQSAQRVELAERQLQELKIDV-KSISSLKLVNLELES 906
Query: 311 DLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLD------------QLTKVHKQLVRD 358
++ +KKS++++ E+ + + I+ L+ L+ +L
Sbjct: 907 EI-IELKKSLSSDLIEN---LEFKTELIARLKKLLNNIDLEEGPSIEYVKLPELNKLHEV 962
Query: 359 NADLRCELPKLE---KRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKEL- 414
+ L+ + E K+ + A + + + E+ L+++ + +E K+L
Sbjct: 963 ESKLKETSEEYEDLLKKSTILVREGN---KANSELKNFKKELAELSKQYGALQESTKQLK 1019
Query: 415 ------------------ITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVN 456
+T + LQ L EN + K + E ++
Sbjct: 1020 ELPVEVAELQSASKIISSESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLD 1079
Query: 457 YDQKSQE--VETKNKEFETLTEELTLKQTTLNTTSTE---LQQIKDMSNHQKKRINEMLT 511
Q Q E K E+T + + Q IK + + L
Sbjct: 1080 DKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQLV 1139
Query: 512 NLLKD 516
N L+
Sbjct: 1140 NTLEP 1144
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812). This
family consists of several eukaryotic proteins of
unknown function.
Length = 536
Score = 34.3 bits (79), Expect = 0.26
Identities = 36/189 (19%), Positives = 70/189 (37%), Gaps = 38/189 (20%)
Query: 295 TKELQTLHNLRKLFVQDLQARIK------KSVTAEESEDDGGSLAQRQKISFLENNLDQL 348
EL+ L + +L++ I+ K++ ++ + + RQ+ LE
Sbjct: 269 EAELEALQEQ----IDELESSIEEVLSEIKALASKIKQVNEELTTVRQENEELEEEY--- 321
Query: 349 TKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAK 408
K+ K+ V D + KL+ + A+ ER + L Q+ E+ +
Sbjct: 322 -KIKKRTVELLPDAENNVAKLQALVVASSER-----------------LLELAQQWEAHR 363
Query: 409 EEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKN 468
LI Y L+ + E + +E+K++ +EEL K Q +
Sbjct: 364 ---TPLIDE----YRSLKEKNRNKEDETQRQLDEIKKLRNKIEELESELQTKEQLYKQLL 416
Query: 469 KEFETLTEE 477
E+E +
Sbjct: 417 DEYENAPKS 425
>gnl|CDD|224241 COG1322, COG1322, Predicted nuclease of restriction
endonuclease-like fold, RmuC family [General function
prediction only].
Length = 448
Score = 33.9 bits (78), Expect = 0.26
Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 6/155 (3%)
Query: 365 ELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQ 424
EL + ++L + R LQ L QE K +++ + +R +
Sbjct: 36 ELAAVLEQLLLLLAFRAEAEQLRTFARSLQALNLELIQELNELKARLQQQLLQSREQLQL 95
Query: 425 LQGEMTRLTQENESAKEEVKEVL-QALEEL-AVNYDQKSQEVETKNKEFETLTEELTLKQ 482
L + +L+ E + E+ E L + L EL N Q + + ++F E+
Sbjct: 96 LIESLAQLSSEFQELANEIFEELNRRLAELNQQNLKQLLKPLREVLEKFREQLEQRI--H 153
Query: 483 TTLNTTSTELQQIKDMSNHQKKRINEM--LTNLLK 515
+ ST L++I + ++ E LT LK
Sbjct: 154 ESAEERSTLLEEIDRLLGEIQQLAQEAGNLTAALK 188
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 33.0 bits (76), Expect = 0.27
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 604 SLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNER 663
S ++ KL+ E+L ++L+E + I + EKLK+ E EE + LL E
Sbjct: 58 SFPSQALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELL------EE 111
Query: 664 REQARKDLKGLEDTVTKELQTL 685
+Q K+LK L+ EL+
Sbjct: 112 LKQLEKELKKLK----AELEKY 129
>gnl|CDD|219345 pfam07243, Phlebovirus_G1, Phlebovirus glycoprotein G1. This
family consists of several Phlebovirus glycoprotein G1
sequences. Members of the Bunyaviridae family acquire an
envelope by budding through the lipid bilayer of the
Golgi complex. The budding compartment is thought to be
determined by the accumulation of the two heterodimeric
membrane glycoproteins G1 and G2 in the Golgi.
Length = 527
Score = 34.0 bits (78), Expect = 0.33
Identities = 35/123 (28%), Positives = 47/123 (38%), Gaps = 20/123 (16%)
Query: 454 AVNY-DQKSQEVETKNKEFETLTEE----LTLKQTTLNTTSTELQQIKDMSNHQKKRINE 508
AV+Y + + K KE LTE+ L ST LQ DM +
Sbjct: 99 AVHYVNNAGKITVVKCKENHELTEDCGFCRKKTLKGLQKISTPLQ---DMFCQKNSDDYS 155
Query: 509 MLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEE--EFTV----ARLYISKMKWRNGETV 562
K +C+IGL E T+ E F V ++YI +MK RN E +
Sbjct: 156 GPKRYSKGVCKIGLHTYKECKTGTTN------FEVVPFIVFKNKGKMYIEQMKLRNREVL 209
Query: 563 KED 565
ED
Sbjct: 210 NED 212
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 34.0 bits (78), Expect = 0.33
Identities = 38/236 (16%), Positives = 106/236 (44%), Gaps = 15/236 (6%)
Query: 286 DLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNL 345
+++GL + + LQ++ L K + R K+ + + ++ + I L + +
Sbjct: 537 EIEGLIELIKYYLQSIETLIK---DEKLKRSMKNDIKNKIKYIEENVDHIKDIISLNDEI 593
Query: 346 DQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENE 405
D + + ++L+ + + + + L+ ++ + L + D ++L E++ +++
Sbjct: 594 DNIIQQIEELINEALFNKEKFINEKNDLQEKVKYI-LNKFYKGDLQELLDELSHFLDDHK 652
Query: 406 ------SAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQ 459
+KE+++ L+ T++ +YE+L+ M + ++ + +K+ LQ L L N +
Sbjct: 653 YLYHEAKSKEDLQTLLNTSKNEYEKLE-FMK--SDNIDNIIKNLKKELQNLLSLKENIIK 709
Query: 460 KSQEVETKN--KEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNL 513
K ++ T + ++++ E ++++ + R NE + +L
Sbjct: 710 KQLNNIEQDISNSLNQYTIKYNDLKSSIEEYKEEEEKLEVYKHQIINRKNEFILHL 765
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 33.9 bits (78), Expect = 0.34
Identities = 27/153 (17%), Positives = 60/153 (39%), Gaps = 21/153 (13%)
Query: 369 LEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGE 428
L+KR R E +++ A+++ E+ +E + + R E+LQ E
Sbjct: 25 LKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARRER--EELQRE 82
Query: 429 MTRLTQENE----------SAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEEL 478
RL Q+ E + + +++E +AL + ++ ++++ + LT E
Sbjct: 83 EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQ 142
Query: 479 TLKQTTLNTTSTELQQIKDMSNHQKK-RINEML 510
K L+ + +K R+ ++
Sbjct: 143 ARKLL--------LKLLDAELEEEKAQRVKKIE 167
Score = 31.6 bits (72), Expect = 1.6
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 606 SNEERQKLEEERERLYQ---QLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNE 662
+ ER++L+ E ERL Q QLD + E+++ E+ ++ + +E + E
Sbjct: 72 ARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSAREL--------ELEE 123
Query: 663 RREQARKDLK 672
+Q +L
Sbjct: 124 LEKQLDNELY 133
>gnl|CDD|235319 PRK04914, PRK04914, ATP-dependent helicase HepA; Validated.
Length = 956
Score = 34.0 bits (79), Expect = 0.35
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 18/90 (20%)
Query: 381 KLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDY-EQLQGEMTRLTQ----- 434
KL+ ++D +L L + A+ + +ELI A+++ E+L E++RL
Sbjct: 865 KLVKAVQQDIHKL------LQKAEAQAEAQARELIEQAKQEADEKLSAELSRLEALKAVN 918
Query: 435 ------ENESAKEEVKEVLQALEELAVNYD 458
E E+ + + +EVL+AL++ + D
Sbjct: 919 PNIRDDEIEALESQRQEVLEALDQAQLRLD 948
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria
with the myosin-like domain [Function unknown].
Length = 499
Score = 33.8 bits (77), Expect = 0.37
Identities = 26/133 (19%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 365 ELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEE---VKELITTARRD 421
+L + +LRA + TA+ + + E E + A++E V++ + AR++
Sbjct: 75 QLDDIRPQLRALRTELG---TAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQN 131
Query: 422 YEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLK 481
+ Q E+ RLT++ + + +K + + +L + ++Q ++ K+ + +L +
Sbjct: 132 LAKAQQELARLTKQAQDLQTRLKTLAEQRRQL----EAQAQSLQASQKQLQASATQLKSQ 187
Query: 482 QTTLNTTSTELQQ 494
L S +++Q
Sbjct: 188 VLDLKLRSAQIEQ 200
Score = 31.9 bits (72), Expect = 1.1
Identities = 50/247 (20%), Positives = 87/247 (35%), Gaps = 56/247 (22%)
Query: 250 ESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFV 309
E A+ K+A E E+E + L + + RE R++L + K Q L L K
Sbjct: 89 ELGTAQGEKRAAETEREAARSELQ-KARQEREAVRQELAAARQNLAKAQQELARLTKQA- 146
Query: 310 QDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKL 369
QDLQ R+K QR++ LE L KQL
Sbjct: 147 QDLQTRLKTLAE------------QRRQ---LEAQAQSLQASQKQL-------------- 177
Query: 370 EKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEM 429
+ QL+ ++ L + ++E + L T A Q
Sbjct: 178 -----------------QASATQLKSQVLDLKLRSAQIEQEAQNLATRA----NAAQ--- 213
Query: 430 TRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTS 489
T+E ++ QA+++ QK+Q++ + ++ +L +T
Sbjct: 214 -ARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLE 272
Query: 490 TELQQIK 496
E+ Q++
Sbjct: 273 QEVAQLE 279
Score = 30.0 bits (67), Expect = 5.7
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 608 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQA 667
EE + ++ Q + ++D +I+Q++Q EQI E+E L Q +E A
Sbjct: 217 EELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVA 276
Query: 668 R 668
+
Sbjct: 277 Q 277
>gnl|CDD|233230 TIGR01000, bacteriocin_acc, bacteriocin secretion accessory
protein. This family represents an accessory protein
that works with the bacteriocin maturation and ABC
transport secretion protein described by TIGR01193
[Transport and binding proteins, Other].
Length = 457
Score = 33.5 bits (77), Expect = 0.37
Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 14/125 (11%)
Query: 435 ENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQ 494
++ K +VK L + DQ + + + + LT K T N S++ +
Sbjct: 225 SDKDQKNQVK--STILATIQQQIDQLQKSIASYQVQKAGLT-----KSTASNYASSQNSK 277
Query: 495 IKDMSNHQKKRINEMLTNLLKDLCEIGLVIGS------EGDMKVTSDGAGKLEEEFTVAR 548
+ + Q ++ + +T+L + L E+ I S +G +K DG L E +
Sbjct: 278 LAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQKGVIKAPEDGVLHLNPETKGIK 337
Query: 549 LYISK 553
Y+ K
Sbjct: 338 -YVPK 341
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 33.6 bits (77), Expect = 0.46
Identities = 40/192 (20%), Positives = 66/192 (34%), Gaps = 24/192 (12%)
Query: 268 GETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESED 327
E + E+ ++ R +L+ LE L R+ L+ R + +A+ D
Sbjct: 220 DELTDVADALEQLDEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYD 279
Query: 328 DGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRA-----TMERVKL 382
R + + L+ + ++L L E L RL A + +
Sbjct: 280 QLSRDLGRAR-----DELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEE 334
Query: 383 ITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEE 442
+ AR D E LQ Q I A E+ E RL +E +
Sbjct: 335 LERARADAEALQAAAADARQA-----------IREAESRLEE---ERRRLDEEAGRLDDA 380
Query: 443 VKEVLQALEELA 454
+E+ A E+LA
Sbjct: 381 ERELRAAREQLA 392
Score = 29.4 bits (66), Expect = 8.0
Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 40/156 (25%)
Query: 363 RCELPKLEKRLRATME-----RVKLITTARR----------DYEQLQGEMTRLTQENESA 407
R EL +LE RA R T RR Y+QL ++ R E E+A
Sbjct: 236 RDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETA 295
Query: 408 KEEVKEL---ITTAR----------------------RDYEQLQGEMTRLTQENESAKEE 442
+EE +EL + E+ + + L A++
Sbjct: 296 REEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQA 355
Query: 443 VKEVLQALEELAVNYDQKSQEVETKNKEFETLTEEL 478
++E LEE D+++ ++ +E E+L
Sbjct: 356 IREAESRLEEERRRLDEEAGRLDDAERELRAAREQL 391
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 33.4 bits (76), Expect = 0.46
Identities = 39/199 (19%), Positives = 78/199 (39%), Gaps = 19/199 (9%)
Query: 311 DLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLE 370
D + K V ED+ + R+ ++ L+ Q Q +++ D
Sbjct: 173 DTDSISDKKVVEALREDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELD--------- 223
Query: 371 KRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMT 430
+ ++ K A + + + Q+ + AK K T++ ++ +Q+
Sbjct: 224 ---KKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQK 280
Query: 431 RLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLK-QTTLNTTS 489
R E E A+ E+K + EE D K+ +++ ++K E E+ L+ Q +
Sbjct: 281 R---EIEKAQIEIK---KNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKREPVA 334
Query: 490 TELQQIKDMSNHQKKRINE 508
+LQ+ K Q +NE
Sbjct: 335 EDLQKTKPQVEAQPTSLNE 353
>gnl|CDD|205039 pfam12718, Tropomyosin_1, Tropomyosin like. This family is a set
of eukaryotic tropomyosins. Within the yeast Tmp1 and
Tmp2, biochemical and sequence analyses indicate that
Tpm2p spans four actin monomers along a filament,
whereas Tpmlp spans five. Despite its shorter length,
Tpm2p can compete with Tpm1p for binding to F-actin.
Over-expression of Tpm2p in vivo alters the axial
budding of haploids to a bipolar pattern, and this can
be partially suppressed by co-over-expression of Tpm1p.
This suggests distinct functions for the two
tropomyosins, and indicates that the ratio between them
is important for correct morphogenesis. The family also
contains higher eukaryote Tmp3 members.
Length = 143
Score = 31.8 bits (73), Expect = 0.47
Identities = 25/104 (24%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 397 MTRLTQENESAK---EEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEV---LQAL 450
M L E E+A+ EE++E + ++ + + E+T L ++N+ +EEV+++ L+
Sbjct: 2 MNALKLEAENAQERAEELEEKLKELEQENLEKEQEITSLQKKNQQLEEEVEKLEEQLKEA 61
Query: 451 EELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQ 494
+E ++ + E + + L EEL + L T+ +L++
Sbjct: 62 KEKLEESEKLATNAEALTRRIQLLEEELEESEKRLKETTEKLRE 105
>gnl|CDD|234084 TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant
protein, PEP-CTERM locus subfamily. Members of this
protein family belong to the family of polysaccharide
chain length determinant proteins (pfam02706). All are
found in species that encode the PEP-CTERM/exosortase
system predicted to act in protein sorting in a number
of Gram-negative bacteria, and are found near the epsH
homolog that is the putative exosortase gene [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 498
Score = 33.5 bits (77), Expect = 0.47
Identities = 38/188 (20%), Positives = 79/188 (42%), Gaps = 26/188 (13%)
Query: 262 EYEKELGETRLLLQTNE-RREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIK--- 317
E ++EL RL L +R+ ++ L G E + ++ ++ L+ ++
Sbjct: 208 EAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALR 267
Query: 318 -------------KSVTA--EESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADL 362
K A EE +++ GS N V++QL + A+
Sbjct: 268 LRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIAN-----PVYQQLQIELAEA 322
Query: 363 RCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDY 422
E+ LE R+ R++ + + R +++ E+T+L ++ E K ++L+T RR+
Sbjct: 323 EAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLT--RRES 380
Query: 423 EQLQGEMT 430
++ +M
Sbjct: 381 AEVSKQME 388
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 33.3 bits (77), Expect = 0.52
Identities = 60/295 (20%), Positives = 114/295 (38%), Gaps = 54/295 (18%)
Query: 236 KSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVT 295
+++V+ + + +AE K ++ ++L +T LL +R+++ + LK
Sbjct: 38 EADVQAQLDALNKQKLLEAE--DKLVQ--QDLEQTLALLDKIDRQKEETEQLKQQLAQAP 93
Query: 296 KELQTLHNLRKLFVQDLQARIKKSVTAEESED-DGGSLAQRQKISFLENNLDQLTKVHKQ 354
+L+ +L +K E E SL Q + S L LDQL
Sbjct: 94 AKLRQ--AQAEL------EALKDDNDEETRETLSTLSLRQLE--SRLAQTLDQLQNAQND 143
Query: 355 LVRDNADL-----RCE------------LPKLEKRLRATMERVKLITTARRDYEQLQGEM 397
L N+ L + E L ++ L+ K + ++R LQ E
Sbjct: 144 LAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRV--LLQAEQ 201
Query: 398 TRLTQENESAKEEVK---ELIT--TARRDY-----EQLQGEMTRLTQE--NESAKEEVKE 445
L +N+ ++ ++ +L +RDY ++L+ +L QE N ++
Sbjct: 202 ALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLE-HQLQLLQEAINSKRLTLSEK 260
Query: 446 VLQALEELAVNYDQKSQEVETKNKEFET---LTEELTLKQTT-LNTTSTELQQIK 496
+Q + + Q +E E L++ L LK T LNT + + ++K
Sbjct: 261 TVQEAQSQDEA--ARIQANPLVAQELEINLQLSQRL-LKATEKLNTLTQQNLRVK 312
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 32.7 bits (75), Expect = 0.54
Identities = 24/117 (20%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 365 ELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQ 424
E+ ++ +R++ E++ + R L E+ + S ++E+ EL + E+
Sbjct: 67 EIQEIRERIKRAEEKLSAVKDERE-LRALNIEIQIAKERINSLEDELAEL----MEEIEK 121
Query: 425 LQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLK 481
L+ E+ L + E ++ + E LEE ++ QE+ +K +E + + L
Sbjct: 122 LEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPELLS 178
Score = 29.3 bits (66), Expect = 5.9
Identities = 28/162 (17%), Positives = 65/162 (40%), Gaps = 9/162 (5%)
Query: 344 NLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERV-KLITTARRDYEQLQGEMTRLTQ 402
+L + K+ + R E+ K K+ +A +E + K + + E L+ ++++L
Sbjct: 8 SLLAIQKLDLEKDRLEP-RIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLES 66
Query: 403 ENESAKEEVKEL------ITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVN 456
E + +E +K + R L E+ + S ++E+ E+++ +E+L
Sbjct: 67 EIQEIRERIKRAEEKLSAVKDERE-LRALNIEIQIAKERINSLEDELAELMEEIEKLEKE 125
Query: 457 YDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDM 498
+ + +E K L + + EL ++
Sbjct: 126 IEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREE 167
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 33.4 bits (76), Expect = 0.54
Identities = 35/175 (20%), Positives = 76/175 (43%), Gaps = 13/175 (7%)
Query: 336 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQG 395
I LE ++ +L +Q ++ ++LR ++ L R+ + + +++ + LQ
Sbjct: 406 SAIERLEQDIKKLQAELQQARQNESELRNQISLLTSLERSLKSDLGQL---KKENDMLQT 462
Query: 396 EMTRLTQENESAKEEVKELI------TTARRDYE-QLQGEMTRLTQENESAKEEVKEVLQ 448
++ + + K+ ++ + +R + E QL E R +E E+A +
Sbjct: 463 KLNSMVSAKQKDKQSMQSMEKRLKSEADSRVNAEKQLAEEKKRKKEEEETAARAAAQAAA 522
Query: 449 ALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQK 503
+ EE A + Q Q++E E + L +L LK+ E Q+++ +K
Sbjct: 523 SREECAESLKQAKQDLEM---EIKKLEHDLKLKEEECRMLEKEAQELRKYQESEK 574
Score = 29.1 bits (65), Expect = 9.1
Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 38/156 (24%)
Query: 335 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKL------EKRLRATME-RVKLITTAR 387
R +IS L + L QL ++N L+ +L + +K+ +ME R+K +R
Sbjct: 433 RNQISLLTSLERSLKSDLGQLKKENDMLQTKLNSMVSAKQKDKQSMQSMEKRLKSEADSR 492
Query: 388 RDYE-QLQGEMTRLTQENESAK----------EEVKELITTARRDYE----QLQGEMT-- 430
+ E QL E R +E E+A EE E + A++D E +L+ ++
Sbjct: 493 VNAEKQLAEEKKRKKEEEETAARAAAQAAASREECAESLKQAKQDLEMEIKKLEHDLKLK 552
Query: 431 --------------RLTQENESAKEEVKEVLQALEE 452
R QE+E E + LQA+++
Sbjct: 553 EEECRMLEKEAQELRKYQESEKETEVLMSALQAMQD 588
>gnl|CDD|227608 COG5283, COG5283, Phage-related tail protein [Function unknown].
Length = 1213
Score = 33.4 bits (76), Expect = 0.57
Identities = 27/157 (17%), Positives = 63/157 (40%), Gaps = 11/157 (7%)
Query: 372 RLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTR 431
+ E ++ A D +Q E+ R TQ ++ A +E T A L G+
Sbjct: 58 KYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAENKLRSLSGQFGV 117
Query: 432 LTQENESAKEEVKEVLQALEELAVN-------YDQKSQEVETKNKEFETLTEELTLKQTT 484
+++ ++E++ + A+ L + +Q + T + + L E +
Sbjct: 118 ASEQLMLQQKEIQRLQYAISTLNKSMAAQARLLEQTGNKFGTADAKVVGLRESFGRQTEA 177
Query: 485 LNTTSTELQQIKDMSNH----QKKRINEMLTNLLKDL 517
LN +++ D + ++++++ L+ L+ L
Sbjct: 178 LNKQLERTKKVADALTYVLDEAQQKLSQALSARLERL 214
>gnl|CDD|217933 pfam04156, IncA, IncA protein. Chlamydia trachomatis is an
obligate intracellular bacterium that develops within a
parasitophorous vacuole termed an inclusion. The
inclusion is non-fusogenic with lysosomes but intercepts
lipids from a host cell exocytic pathway. Initiation of
chlamydial development is concurrent with modification
of the inclusion membrane by a set of C.
trachomatis-encoded proteins collectively designated
Incs. One of these Incs, IncA, is functionally
associated with the homotypic fusion of inclusions. This
family probably includes members of the wider Inc family
rather than just IncA.
Length = 186
Score = 32.0 bits (73), Expect = 0.70
Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 20/145 (13%)
Query: 576 MAASIAPTPESAPASILPAIPGSGLMLGSL---------------SNEERQKLEEERERL 620
A + A I + + L LG + + QKLEE + L
Sbjct: 22 GIALLVLFGAGLGALISTLLGIALLALGLVLLALGLLCLLLKAPVQSVRPQKLEELQGEL 81
Query: 621 ---YQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQARKDLKGLEDT 677
QQL E EE+ + +L+ ++ + +E LL + + E+ + L+
Sbjct: 82 SELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLR--ELLKSLEERLESLEESIKE 139
Query: 678 VTKELQTLHNLRKLFVQDQVTSSQR 702
+ KEL+ L + V++ +R
Sbjct: 140 LAKELRELRQDLREEVEELREELER 164
Score = 32.0 bits (73), Expect = 0.73
Identities = 23/100 (23%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 333 AQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQ 392
+Q++S L+ L+ L + +L + DL+ +L L + L++ ER++ + ++
Sbjct: 83 ELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKSLEERLE---SLEESIKE 139
Query: 393 LQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRL 432
L E+ L Q+ EE++E + + + ++LQ + L
Sbjct: 140 LAKELRELRQDLREEVEELREELERLQENLQRLQEAIQEL 179
Score = 30.5 bits (69), Expect = 1.8
Identities = 26/134 (19%), Positives = 61/134 (45%), Gaps = 4/134 (2%)
Query: 373 LRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRL 432
L + + + + + E+LQGE++ L Q+ +EE+++L +L+ E+ L
Sbjct: 57 LLCLLLKAPVQSVRPQKLEELQGELSELKQQLSELQEELEDL----EERIAELESELEDL 112
Query: 433 TQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTEL 492
++ + +E +K + + LE L + + ++E+ ++ EEL + L L
Sbjct: 113 KEDLQLLRELLKSLEERLESLEESIKELAKELRELRQDLREEVEELREELERLQENLQRL 172
Query: 493 QQIKDMSNHQKKRI 506
Q+ +++
Sbjct: 173 QEAIQELQSLLEQL 186
>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD. This
model describes the DndB protein encoded by an operon
associated with a sulfur-containing modification to DNA.
The operon is sporadically distributed in bacteria, much
like some restriction enzyme operons. DndD is described
as a putative ATPase. The small number of examples known
so far include species from among the Firmicutes,
Actinomycetes, Proteobacteria, and Cyanobacteria [DNA
metabolism, Restriction/modification].
Length = 650
Score = 32.7 bits (75), Expect = 0.78
Identities = 38/199 (19%), Positives = 84/199 (42%), Gaps = 20/199 (10%)
Query: 337 KISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKR---LRATMERVKLITTARRDYEQL 393
+I LE L + ++ ++ L ++ A LR EL + ++ L R EQL
Sbjct: 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEER--EQL 267
Query: 394 QGEMTRLTQENESAKEEVKELITT------------ARRDYEQLQGEMTRLTQENESAKE 441
+ ++ + ++ + +++EL + + Q + + + E +E
Sbjct: 268 ERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQLQKEEQSQQNQLTQEELEE 327
Query: 442 EVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNH 501
KE+L++L +LA+ + E + E T + + +EL Q++ +
Sbjct: 328 RDKELLESLPKLALPAEHVK---EIAAELAEIDKPATTDSEIPHRLSGSELTQLEVLIQQ 384
Query: 502 QKKRINEMLTNLLKDLCEI 520
K+ + + + LLK+L E+
Sbjct: 385 VKRELQDAKSQLLKELREL 403
>gnl|CDD|192987 pfam12325, TMF_TATA_bd, TATA element modulatory factor 1 TATA
binding. This is the C-terminal conserved coiled coil
region of a family of TATA element modulatory factor 1
proteins conserved in eukaryotes. The proteins bind to
the TATA element of some RNA polymerase II promoters and
repress their activity. by competing with the binding of
TATA binding protein. TMF1_TATA_bd is the most conserved
part of the TMFs. TMFs are evolutionarily conserved
golgins that bind Rab6, a ubiquitous ras-like
GTP-binding Golgi protein, and contribute to Golgi
organisation in animal and plant cells. The Rab6-binding
domain appears to be the same region as this C-terminal
family.
Length = 121
Score = 31.0 bits (71), Expect = 0.82
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 391 EQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 450
E+L + RL E S K+E+ L A RD + + E+ +LT+ENE +E KE+
Sbjct: 20 ERLSSTLRRLEGELASLKDELARL--EAERD--EARQEIVKLTEENEELRELKKEI---- 71
Query: 451 EELAVNYDQKSQEVET 466
EEL + Q ET
Sbjct: 72 EELEKELEDLEQRYET 87
Score = 29.5 bits (67), Expect = 2.2
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 365 ELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQ 424
L +LE L + + + + R ++ + E+ +LT+ENE +E KE+ E+
Sbjct: 25 TLRRLEGELASLKDELARLEAER---DEARQEIVKLTEENEELRELKKEI--------EE 73
Query: 425 LQGEMTRLTQENESAKEEVKEVLQALEEL 453
L+ E+ L Q E+ E + E + +EEL
Sbjct: 74 LEKELEDLEQRYETTLELLGEKSERVEEL 102
>gnl|CDD|234342 TIGR03752, conj_TIGR03752, integrating conjugative element protein,
PFL_4705 family. Members of this protein family are
found occasionally on plasmids such as the Pseudomonas
putida toluene catabolic TOL plasmid pWWO_p085. Usually,
however, they are found on the bacterial main chromosome
in regions flanked by markers of conjugative transfer
and/or transposition [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 472
Score = 32.3 bits (74), Expect = 0.87
Identities = 24/108 (22%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
Query: 394 QGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEL 453
E+ L E ++ + ++ L+ + +L+ + +L ENE+ K E E LQ E
Sbjct: 44 PEELKALGIEGDTPADTLRTLVAEVK----ELRKRLAKLISENEALKAE-NERLQK-REQ 97
Query: 454 AVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQ-QIKDMSN 500
+++ Q Q V+++ +E E+L ++ L +LQ ++ +
Sbjct: 98 SIDQ-QIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGVLT 144
Score = 31.9 bits (73), Expect = 1.2
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 341 LENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRL 400
L + +L K +L+ +N L+ E +L+KR ++ ++++ + +Q E L
Sbjct: 64 LVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQ---------QAVQSETQEL 114
Query: 401 TQENESAKEEVKELITTARRDYEQLQGEMTR 431
T+E E K E ++L + +L G +T
Sbjct: 115 TKEIEQLKSERQQLQGLIDQLQRRLAGVLTG 145
Score = 31.5 bits (72), Expect = 1.5
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 390 YEQLQGEMTRLTQENESAKEEVKELITTARRDYEQ----LQGEMTRLTQENESAKEEVKE 445
++L+ + +L ENE+ K E + L + +Q +Q E LT+E E K E ++
Sbjct: 68 VKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQ 127
Query: 446 VLQALEEL 453
+ +++L
Sbjct: 128 LQGLIDQL 135
>gnl|CDD|139237 PRK12802, PRK12802, flagellin; Provisional.
Length = 282
Score = 32.2 bits (73), Expect = 0.97
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 432 LTQENESAKEEVKEVLQALEELAV---NYDQKSQEVETKNKEFETLTEELT--LKQTTLN 486
+ Q E A +E +LQ + ELAV N S + NKEF T+ +E+T TTLN
Sbjct: 74 IAQTAEGALQESTNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEITRIATSTTLN 133
>gnl|CDD|237616 PRK14127, PRK14127, cell division protein GpsB; Provisional.
Length = 109
Score = 30.4 bits (69), Expect = 1.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 408 KEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKE 445
++EV + + +DYE Q E+ L QEN K +V E
Sbjct: 25 QDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDE 62
Score = 29.2 bits (66), Expect = 2.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 388 RDYEQLQGEMTRLTQENESAKEEVKEL 414
+DYE Q E+ L QEN K +V EL
Sbjct: 37 KDYEAFQKEIEELQQENARLKAQVDEL 63
>gnl|CDD|234263 TIGR03568, NeuC_NnaA, UDP-N-acetyl-D-glucosamine 2-epimerase,
UDP-hydrolysing. This family of enzymes catalyzes the
combined epimerization and UDP-hydrolysis of
UDP-N-acetylglucosamine to N-acetylmannosamine. This is
in contrast to the related enzyme WecB (TIGR00236) which
retains the UDP moiety. NeuC acts in concert with NeuA
and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Length = 365
Score = 31.7 bits (73), Expect = 1.2
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 433 TQENESAKEEVKEVLQALEELAVNY 457
T E ESA+E++KE+L+AL+EL NY
Sbjct: 212 TLEKESAEEQIKELLKALDELNKNY 236
>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 557
Score = 32.2 bits (74), Expect = 1.2
Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 606 SNEERQKLEEERERLYQQLDEKDEEINQQSQ-YAEKLKEQIMEQ 648
S E + LE+E ++L +L E E ++ + A++L++++ +
Sbjct: 340 SEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEVTAE 383
Score = 30.6 bits (70), Expect = 3.3
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 15/78 (19%)
Query: 608 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQA 667
E K++EE QLD +E + + +KLK +++E + R++A
Sbjct: 325 EYLDKIKEE----LAQLDNSEESLEALEKEVKKLKAELLE--------AAEALSAIRKKA 372
Query: 668 RKDLKGLEDTVTKELQTL 685
K LE VT EL+ L
Sbjct: 373 ---AKELEKEVTAELKAL 387
Score = 29.9 bits (68), Expect = 5.1
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Query: 601 MLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIME--------QEEVS 652
L S E R L+E E +L+E +E + A K I + +EE++
Sbjct: 277 ELEEASEELRAYLDE-LEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELA 335
Query: 653 GLLVCGQTNERREQARKDLKGLEDTVTKELQTLHNLRK 690
L + E E K++K L+ + + + L +RK
Sbjct: 336 QLD---NSEESLEALEKEVKKLKAELLEAAEALSAIRK 370
>gnl|CDD|219791 pfam08317, Spc7, Spc7 kinetochore protein. This domain is found in
cell division proteins which are required for
kinetochore-spindle association.
Length = 321
Score = 31.9 bits (73), Expect = 1.2
Identities = 23/138 (16%), Positives = 54/138 (39%), Gaps = 14/138 (10%)
Query: 383 ITTARRDYEQLQGEMT-------RLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQE 435
+ +RD E L ++ +L ++ ++ KEE+ L R L E
Sbjct: 156 LEGMKRDEELLNKDLNLINSIKPKLRKKLQALKEEIASL-----RQLADELNLCDPL--E 208
Query: 436 NESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQI 495
E A++E++ + + E ++ QE++ E LT + + + ++
Sbjct: 209 LEKARQELRSLSVKISEKRKQLEELQQELQELTIAIEALTNKKSELLEEIAEAEKIREEC 268
Query: 496 KDMSNHQKKRINEMLTNL 513
+ S + ++ ++ L
Sbjct: 269 RGWSAKEISKLKAKVSLL 286
Score = 29.6 bits (67), Expect = 5.7
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 607 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQ 666
+E+R++LEE L Q+L E I + +L E+I E E++ E R
Sbjct: 224 SEKRKQLEE----LQQELQELTIAIEALTNKKSELLEEIAEAEKI--------REECRGW 271
Query: 667 ARKDLKGLEDTVTKELQTLHNLR 689
+ K++ L+ V LQ L +
Sbjct: 272 SAKEISKLKAKV-SLLQKLTGWK 293
>gnl|CDD|233933 TIGR02568, LcrE, type III secretion regulator YopN/LcrE/InvE/MxiC.
This protein is found in type III secretion operons and,
in Yersinia is localized to the cell surface and is
involved in the Low-Calicium Response (LCR), possibly by
sensing the calcium concentration. In Salmonella, the
gene is known as InvE and is believed to perform an
essential role in the secretion process and interacts
with the proteins SipBCD and SicA.//Altered name to
reflect regulatory role. Added GO and role IDs. Negative
regulation of type III secretion in Y pestis is mediated
in part by a multiprotein complex that has been proposed
to act as a physical impediment to type III secretion by
blocking the entrance to the secretion apparatus prior
to contact with mammalian cells. This complex is
composed of YopN, its heterodimeric secretion chaperone
SycN-YscB, and TyeA. PMID: 15701523[SS 6/3/05] [Protein
fate, Protein and peptide secretion and trafficking,
Cellular processes, Pathogenesis].
Length = 240
Score = 31.6 bits (72), Expect = 1.2
Identities = 18/124 (14%), Positives = 46/124 (37%), Gaps = 5/124 (4%)
Query: 341 LENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLI--TTARRDYEQLQGEMT 398
L + ++L +L L+ LE++ E ++ + A + ++L+ E++
Sbjct: 15 LADAAEELRF--AELEAARKALQSRKVALEEKAELLSEYLERVLDADADQKLKELRAELS 72
Query: 399 RLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYD 458
E + L+ + + + + ++ ++E QAL EL
Sbjct: 73 GQAAGLEQLLALARGAFPDPSDQALALR-AALQRLELDPAERKALEEAAQALLELEDGPT 131
Query: 459 QKSQ 462
++
Sbjct: 132 IRAG 135
>gnl|CDD|206779 cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP),
signaling domain. Methyl-accepting chemotaxis proteins
(MCPs or chemotaxis receptors) are an integral part of
the transmembrane protein complex that controls
bacterial chemotaxis, together with the histidine kinase
CheA, the receptor-coupling protein CheW,
receptor-modification enzymes, and localized
phosphatases. MCPs contain a four helix trans membrane
region, an N-terminal periplasmic ligand binding domain,
and a C-terminal HAMP domain followed by a cytoplasmic
signaling domain. This C-terminal signaling domain
dimerizes into a four-helix bundle and interacts with
CheA through the adaptor protein CheW.
Length = 200
Score = 31.1 bits (71), Expect = 1.3
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 396 EMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAV 455
E+ +L +E+ A +E++ELI + E+ M ++E E E V+E +A EE+
Sbjct: 107 EVRKLAEESAEAAKEIEELIEEIQEQTEEAVEAMEETSEEVEEGVELVEETGRAFEEIV- 165
Query: 456 NYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQ 493
+EV +E T+E + + E+
Sbjct: 166 ---ASVEEVADGIQEISAATQEQSASTQEIAAAVEEIA 200
>gnl|CDD|223910 COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility
and secretion / Signal transduction mechanisms].
Length = 408
Score = 31.9 bits (72), Expect = 1.4
Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 7/117 (5%)
Query: 396 EMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAV 455
E+ +L + + + +E+ LI + + M E + V+E +L E+A
Sbjct: 279 EVRKLAERSADSAKEIGLLIEEIQNEAADAVEHMEESASEVSEGVKLVEETGSSLGEIA- 337
Query: 456 NYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTN 512
+EV E TEE T L + ++++ D++ + E+
Sbjct: 338 ---AAIEEVSQLISEIAAATEEQT---AVLEEINASIEELDDVTQENAAAVEELAAA 388
Score = 31.1 bits (70), Expect = 2.2
Identities = 22/150 (14%), Positives = 52/150 (34%), Gaps = 7/150 (4%)
Query: 371 KRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMT 430
L +ER+ +R E E +L + ++++I + + E L G
Sbjct: 89 SDLLEVVERIAAGDLTKRIDESSNDEFGQLAKSFNEMILNLRQIIDAVQDNAEALSGASE 148
Query: 431 RLTQENESA-------KEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQT 483
+ E ++EV A+EEL+ + + + ++
Sbjct: 149 EIAASATELSARADQQAESLEEVASAIEELSETVKEVAFNAKEAAALASEASQVAEEGGE 208
Query: 484 TLNTTSTELQQIKDMSNHQKKRINEMLTNL 513
+ ++Q+I + K+++E +
Sbjct: 209 EVRQAVEQMQEIAEELAEVVKKLSESSQEI 238
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain
(CALCOCO1) like. Proteins found in this family are
similar to the coiled-coil transcriptional coactivator
protein coexpressed by Mus musculus (CoCoA/CALCOCO1).
This protein binds to a highly conserved N-terminal
domain of p160 coactivators, such as GRIP1, and thus
enhances transcriptional activation by a number of
nuclear receptors. CALCOCO1 has a central coiled-coil
region with three leucine zipper motifs, which is
required for its interaction with GRIP1 and may regulate
the autonomous transcriptional activation activity of
the C-terminal region.
Length = 546
Score = 31.9 bits (72), Expect = 1.5
Identities = 48/205 (23%), Positives = 86/205 (41%), Gaps = 19/205 (9%)
Query: 320 VTAEESEDDGGSLAQRQKISFLENNLD-------QLTKVHKQLVRDNADLRCELPKLEKR 372
VT E+ +D L K + L+N L+ L K L D +D+R + +LE
Sbjct: 120 VTLEKEDDGDDLLLVVPKATILQNQLEGCQRERNDLMKKFLALEGDVSDMRSRIEQLETA 179
Query: 373 LR----ATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGE 428
LR T E + A+ E + E L + ++ + EL EQ
Sbjct: 180 LRHSTEKTEELEEQHKEAQSSSESMSAERNALLAQRAENQQRILEL--------EQDIQT 231
Query: 429 MTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTT 488
+T+ QEN+ E +++ LE + Q+ +++ + ++ ET +L L+ L+
Sbjct: 232 LTQKKQENDRVLEGTQDIEAELERMKGELKQRLKKMTIQRRDEETERIDLQLENEQLHED 291
Query: 489 STELQQIKDMSNHQKKRINEMLTNL 513
LQ+ + S + + E L +L
Sbjct: 292 LRTLQERLESSQQKAGLLGEELASL 316
Score = 30.0 bits (67), Expect = 5.4
Identities = 50/245 (20%), Positives = 94/245 (38%), Gaps = 24/245 (9%)
Query: 250 ESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFV 309
E+ + E + IE E E + L + + Q R + D + Q +LR L
Sbjct: 238 ENDRVLEGTQDIEAELERMKGELKQRLKKMTIQRRDEETERIDLQLENEQLHEDLRTL-- 295
Query: 310 QDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLR---CEL 366
Q+ ++ E + I+ L + + ++ QL + N L+ +
Sbjct: 296 QERLESSQQKAGLLGEELASLGSLRDHTIAELHQSRLESAQMSLQLSQLNLALKEGQSQW 355
Query: 367 PKLEKRLRATMER-----VKLITTARRDYEQLQGEMT-------RLTQENESAKEEVKEL 414
+ + LR + E KL + E LQ E + L E + + ++ E
Sbjct: 356 AQERETLRQSAEADKDRIQKLSAELLKLEEWLQEERSQREKLEVELGIEKDCNRVQLSE- 414
Query: 415 ITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETL 474
RR+ +L+ + L +E E +EE +E+L + L + D+++ E K E
Sbjct: 415 ---NRRELSELRSALRVLQKEKEQLQEEKQELLDYIRVLELRLDKEADE---KWAEDAAT 468
Query: 475 TEELT 479
E+
Sbjct: 469 CEDAK 473
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 31.7 bits (72), Expect = 1.5
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 440 KEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKD-M 498
KEE+ +++ L L +QK++ +E KE E L +EL + EL++ +
Sbjct: 510 KEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEM-------EELKERERNK 562
Query: 499 SNHQKKRINEMLTNLLKDLCEI 520
+K E L L K++ I
Sbjct: 563 KLELEKEAQEALKALKKEVESI 584
Score = 29.0 bits (65), Expect = 9.9
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 609 ERQKLEEERERLYQQLDEKDEEI--NQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERRE- 665
E++KL++E E+ ++L E++ + + E LK E E + L + ++ +E
Sbjct: 540 EQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKEKKIHKAKEI 599
Query: 666 QARKDLKGLEDTVTKELQTLHNLRKLFVQDQV 697
++ +DL L++T K Q N + + D+V
Sbjct: 600 KSIEDLVKLKETKQKIPQKPTNFQADKIGDKV 631
>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 835
Score = 32.0 bits (73), Expect = 1.5
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 16/89 (17%)
Query: 608 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQA 667
+E+ ++ +ER+ L + IN AE+L EV +L + RRE
Sbjct: 136 QEQFEVTQERDALQAE----KAYINALEGQAEQL------TAEVRDILD-QILDTRRELL 184
Query: 668 RKDLKGLEDTVTKELQ-----TLHNLRKL 691
L E + Q LR L
Sbjct: 185 NSLLSQREAISLQLNQQQLSAASDELRSL 213
>gnl|CDD|234780 PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha;
Validated.
Length = 339
Score = 31.6 bits (73), Expect = 1.6
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 602 LGSLSNEER----QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQI 645
LG L EER + E ++ + L+E+ EE+ + A E I
Sbjct: 46 LGKLPPEERKEAGALINELKQAIEAALEERKEELEAAALNARLAAETI 93
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 31.4 bits (71), Expect = 1.6
Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 18/110 (16%)
Query: 376 TMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQE 435
T++RV + DYE+L+ ++ L +E E +L E+ L E
Sbjct: 123 TLQRVPEYMDLKEDYEELKEKLEELQKEKE------------------ELLKELEELEAE 164
Query: 436 NESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTL 485
E +E +K + L + EV K ++ L + L + L
Sbjct: 165 YEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEEL 214
>gnl|CDD|239498 cd03404, Band_7_HflK, Band_7_HflK: The band 7 domain of flotillin
(reggie) like proteins. This group includes proteins
similar to prokaryotic HlfK (High frequency of
lysogenization K). Although many members of the band 7
family are lipid raft associated, prokaryote plasma
membranes lack cholesterol and are unlikely to have
lipid raft domains. Individual proteins of this band 7
domain family may cluster to form membrane microdomains
which may in turn recruit multiprotein complexes.
Escherichia coli HflK is an integral membrane protein
which may localize to the plasma membrane. HflK
associates with another band 7 family member (HflC) to
form an HflKC complex. HflKC interacts with FtsH in a
large complex termed the FtsH holo-enzyme. FtsH is an
AAA ATP-dependent protease which exerts progressive
proteolysis against membrane-embedded and soluble
substrate proteins. HflKC can modulate the activity of
FtsH. HflKC plays a role in the decision between
lysogenic and lytic cycle growth during lambda phage
infection.
Length = 266
Score = 31.4 bits (72), Expect = 1.6
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 13/86 (15%)
Query: 373 LRATMERVKLITTARRDYEQL----QGEMTRLTQENESAKEEVKELITTARRDYEQLQGE 428
+A +R +LI A ++ +GE R+ QE E+ KEEV I A+ +
Sbjct: 186 NKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEV---IAEAQGEAA----R 238
Query: 429 MTRLTQENESAKEEVKE--VLQALEE 452
L E + A + +E L+ +EE
Sbjct: 239 FESLLAEYKKAPDVTRERLYLETMEE 264
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 31.9 bits (72), Expect = 1.7
Identities = 45/230 (19%), Positives = 89/230 (38%), Gaps = 19/230 (8%)
Query: 311 DLQARIKKSVTAEESEDD---GGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELP 367
D + + +E D G + ++ I E + +L +++ RD L+ ++
Sbjct: 709 DKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIE 768
Query: 368 KLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQG 427
+ E L M + D M R E + + ++ + A+ L
Sbjct: 769 EQETLLGTIMPEEESAKVCLTDV----TIMERFQMELKDVERKIAQQA--AKLQGSDLDR 822
Query: 428 EMTRLTQENESAKEEVKEVLQALEEL-AVNYDQKSQEVETKNKEFETLTEELTLKQTT-- 484
+ ++ QE + + E+ V+ +E + DQ+ Q K+K E +E+L +
Sbjct: 823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQR 882
Query: 485 -------LNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSE 527
L STE+Q + K++ + + T L KD E +I S+
Sbjct: 883 RQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSK 932
Score = 30.8 bits (69), Expect = 3.8
Identities = 67/378 (17%), Positives = 137/378 (36%), Gaps = 54/378 (14%)
Query: 341 LENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRL 400
LE+ L +K Q A L EL LE+ ++ YE ++
Sbjct: 575 LEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCG- 633
Query: 401 TQENESAKEEVKELITTARRDYEQLQGE-------MTRLTQENES----------AKEEV 443
+Q+ ES E +KE I + + L G +T+LT EN+S + E+
Sbjct: 634 SQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAEL 693
Query: 444 KEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLK----QTTLNTTSTELQQIKDMS 499
+E + L+ K + E++ K+ E +E+ Q+ ++ E+ ++++
Sbjct: 694 QEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKL 753
Query: 500 NHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNG 559
+ I + ++ + +G ++ E KV +E R M+ ++
Sbjct: 754 QKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIME------RFQ---MELKDV 804
Query: 560 ETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERER 619
E K +Q D+ ++ + L E +KL ++++
Sbjct: 805 ER-KIAQQAAKLQGSDLDRTVQQVNQEKQEK------QHELDTVVSKIELNRKLIQDQQE 857
Query: 620 LYQQLDEKDEEIN-----------QQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQAR 668
Q L K E+ ++ Q+ E+L E E + + + + +EQ
Sbjct: 858 QIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLI-----REIKDAKEQDS 912
Query: 669 KDLKGLEDTVTKELQTLH 686
LE ++ + +
Sbjct: 913 PLETFLEKDQQEKEELIS 930
>gnl|CDD|192773 pfam11559, ADIP, Afadin- and alpha -actinin-Binding. This family
is found in mammals where it is localised at cell-cell
adherens junctions, and in Sch. pombe and other fungi
where it anchors spindle-pole bodies to spindle
microtubules. It is a coiled-coil structure, and in
pombe, it is required for anchoring the minus end of
spindle microtubules to the centrosome equivalent, the
spindle-pole body. The name ADIP derives from the family
being composed of Afadin- and alpha -Actinin-Binding
Proteins Localised at Cell-Cell Adherens Junctions.
Length = 149
Score = 30.3 bits (69), Expect = 1.7
Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 14/118 (11%)
Query: 396 EMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAV 455
+ + + +E ++E + + E+LQ + RL + E + E+ + +L
Sbjct: 40 SLLQQRDRDLEFRESLEETLRKLEAEIERLQNTIERLKTQLEDLERELALLQAKERQL-- 97
Query: 456 NYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNL 513
K+ E + KN EE+ + +QQ K NH+ K+ + + L
Sbjct: 98 EKKLKTLEQKLKN-----EKEEVQRLKNI-------IQQRKTQYNHELKKRDREIEKL 143
>gnl|CDD|225939 COG3404, COG3404, Methenyl tetrahydrofolate cyclohydrolase [Amino
acid transport and metabolism].
Length = 208
Score = 30.8 bits (70), Expect = 1.7
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
Query: 375 ATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQ 434
A V +T ++ YE EM + +E + K E+ LI + + +L +
Sbjct: 37 ALASMVANLTRGKKGYEDYDDEMKEILEELQKIKAELLALIDKDEEAFNLIM-AAYKLPK 95
Query: 435 ENESAKEEVKEVLQ-ALEELAVNYDQKSQEVETKNKEFETLTEEL 478
E K ++ LQ AL+E A + ++ T + L E+L
Sbjct: 96 STEEEKAARRKALQNALKEAA----KVPLDIATLMVDLLELLEKL 136
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 31.5 bits (72), Expect = 1.7
Identities = 8/40 (20%), Positives = 23/40 (57%)
Query: 607 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIM 646
E+ ++LEE + L ++ E + ++ + + E L++++
Sbjct: 327 REKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLE 366
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 30.3 bits (69), Expect = 1.7
Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 389 DYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQ 448
D +++ E + ++E K+L ++ ++LQ E +L ++ + EE ++ Q
Sbjct: 22 DVQKVLSESPAGKAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQ 81
Query: 449 AL-----EELAVNYDQKSQEVETKNKEF 471
+EL QE++ K +E
Sbjct: 82 QELQQKQQELQQKQQAAQQELQQKQQEL 109
>gnl|CDD|132534 TIGR03495, phage_LysB, phage lysis regulatory protein, LysB family.
Members of this protein family are phage lysis
regulatory protein, including the well-studied protein
LysB (lysis protein B) of Enterobacteria phage P2. For
members of this family, genes are found in phage or in
prophage regions of bacterial genomes, typically near a
phage lysozyme or phage holin.
Length = 135
Score = 30.1 bits (68), Expect = 1.9
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 373 LRATMERV-KLITTARRDYEQLQGEMTRLTQE---NESAKEEVKELITTARRDYEQLQGE 428
RA +ER +++ + + ++ L NE A+ ++++ + AR Q +
Sbjct: 24 ARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQR 83
Query: 429 MTRLTQENE 437
+ RL +ENE
Sbjct: 84 IERLKRENE 92
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome
partitioning].
Length = 1480
Score = 31.4 bits (71), Expect = 2.3
Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 19/159 (11%)
Query: 353 KQLVRDNADLRCELPKLEKRLRATMERVKLITTARR---------DYEQLQGEMTRLTQE 403
+ L LR L +LE+RLR +L+ + + E L E+ L +
Sbjct: 509 RHLAEQVQPLRMRLSELEQRLRQQQSAERLLADFCKRQGKNLDAEELEALHQELEALIES 568
Query: 404 NESAKEEVKELITTARRDYEQLQGEMTRLTQE------NESAKEEVKEVLQALEELAVNY 457
+ +E R++ EQLQ + L Q ++A E++ E Q+ EE +
Sbjct: 569 LSDSVSNAREQRMALRQEQEQLQSRIQSLMQRAPVWLAAQNALEQLSE--QSGEEFTDSQ 626
Query: 458 D--QKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQ 494
D + Q++ + +E +EL ++ L+ L Q
Sbjct: 627 DVTEYMQQLLEREREATVERDELGARKNALDEEIERLSQ 665
Score = 30.6 bits (69), Expect = 3.9
Identities = 33/170 (19%), Positives = 60/170 (35%), Gaps = 14/170 (8%)
Query: 352 HKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEV 411
H + R+ A+L LE +A + + L+ TA R E+++ L + EE
Sbjct: 309 HVDMSRELAELNGAEGDLEADYQAASDHLNLVQTALRQQEKIERYQADLEELTIRL-EEQ 367
Query: 412 KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL---EELAVNYDQKSQEVETKN 468
E++ A E+ + E + K ++ + QAL + A+ Y Q +E
Sbjct: 368 NEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYQQAIAALERAK 427
Query: 469 ----------KEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINE 508
E E K+ L+Q M+ + +
Sbjct: 428 ELCHLPDLTADSAEEWLETFQAKEEEATEKLLSLEQKMSMAQAAHSQFEQ 477
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 31.0 bits (70), Expect = 2.4
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 384 TTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEV 443
+YE L E+ L +E E +E++EL ++ + L GE+ L +E E + E
Sbjct: 59 NVEISNYEALDSELDELKKEEERLLDELEEL----EKEDDDLDGELVELQEEKEQLENEE 114
Query: 444 KEVLQALEELAVNYDQKSQEVETKNKEFE 472
+ L+ N Q +++ ++E
Sbjct: 115 LQYLREYNLFDRNNLQLEDNLQSLELQYE 143
>gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional.
Length = 428
Score = 30.8 bits (70), Expect = 2.6
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 24/91 (26%)
Query: 607 NEERQK----LEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNE 662
N+ RQ+ L++ RE L Q K E +QSQ L EQ +Q+++
Sbjct: 165 NQARQETIAELKQTREELAAQ---KAELEEKQSQQKTLLYEQQAQQQKL----------- 210
Query: 663 RREQAR----KDLKGLEDTVTKELQTLHNLR 689
EQAR K L GLE ++ K+ Q L LR
Sbjct: 211 --EQARNERKKTLTGLESSLQKDQQQLSELR 239
>gnl|CDD|165311 PHA03011, PHA03011, hypothetical protein; Provisional.
Length = 120
Score = 29.5 bits (66), Expect = 2.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 607 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQI 645
+E +E E + L + + D+EI+ +KLKE I
Sbjct: 77 LDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENI 115
>gnl|CDD|188641 cd00954, NAL, N-Acetylneuraminic acid aldolase, also called
N-acetylneuraminate lyase (NAL). N-Acetylneuraminic
acid aldolase, also called N-acetylneuraminate lyase
(NAL), which catalyses the reversible aldol reaction of
N-acetyl-D-mannosamine and pyruvate to give
N-acetyl-D-neuraminic acid (D-sialic acid). It has a
widespread application as biocatalyst for the synthesis
of sialic acid and its derivatives. This enzyme has been
shown to be quite specific for pyruvate as the donor,
but flexible to a variety of D- and, to some extent,
L-hexoses and pentoses as acceptor substrates. NAL is
member of dihydrodipicolinate synthase family that
comprises several pyruvate-dependent class I aldolases.
Length = 288
Score = 30.4 bits (69), Expect = 2.9
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 627 KDEEINQQS--QYAEKLKEQIMEQEEVSGLLVCGQTNE 662
++ EIN+ + L +E++ V GL V G T E
Sbjct: 14 ENGEINEDVLRAIVDYL----IEKQGVDGLYVNGSTGE 47
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 30.9 bits (70), Expect = 3.0
Identities = 37/216 (17%), Positives = 74/216 (34%), Gaps = 28/216 (12%)
Query: 262 EYEKELGETRLLLQTNERREQARKDLKGLEDTV--TKELQTLHNLRKLFVQDLQARIKKS 319
Y K E LL R A + V +EL L L + +++ + + +
Sbjct: 623 AYFKARAELDALLDRRARLRAALRAALKAVAIVLPGEELAELLELARQLLEEAEKQAARK 682
Query: 320 VTAEESEDDG-GSLAQRQK-----ISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRL 373
+ +E D +L + ++ S LE +Q + + L
Sbjct: 683 ASLDERLRDAERALEEAEERHDEAQSALEAWQEQWYDALLEAGLGGRASPAGALDALELL 742
Query: 374 RATMERVKLITTARRDYEQLQGEMTRLTQE----------------NESAKEEVKELITT 417
+ E+++ R+ ++ ++ R +E + +K+ +
Sbjct: 743 QNIKEKLQAADDLRQRIAAMERDLARFEEEVEALAEAVAPEMLGTPADETARALKQRLKR 802
Query: 418 ARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEL 453
AR +L +E E A++EV E AL+E
Sbjct: 803 ARDTAA----AAEKLAEEIEEAEKEVSEAAAALDEA 834
Score = 30.5 bits (69), Expect = 3.9
Identities = 62/289 (21%), Positives = 107/289 (37%), Gaps = 27/289 (9%)
Query: 203 LDEAKNINKSLSADGAGKLEEEFTVARL--YISKMKSEVKNLVARCTSMESSQAEEHKKA 260
L E K + + L+A G V R +++++ +NL +E+ QAE
Sbjct: 217 LAERKALEQQLAALGEVIDLPPDAVERYEEARAELRAARRNLELLTERLEALQAE--LDE 274
Query: 261 IEYEKELGE-----TRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQAR 315
I ++EL L Q E R A +DL E + + L A+
Sbjct: 275 ISLDEELLAQAAAIEALHQQRGEYRN-AEQDLPDREGEIANAREAA--------AALLAQ 325
Query: 316 IKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRA 375
I E E SLA ++ ++ LE + L + K + EL ++ +L A
Sbjct: 326 IGPDADEEAVESLRPSLAAKETVTELEKRKEALDQALKSARDALEERERELKQVRAQLAA 385
Query: 376 -----TMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMT 430
E ++ + + L QE AK E+ + A +G++
Sbjct: 386 LPTVTVPEPLRAALADALRAGDIDAALAALEQEVAVAKRELAQ----ALSRLGLWRGDLE 441
Query: 431 RLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELT 479
L + E+V+ L+ EE+ QK + ++ ETL +L
Sbjct: 442 ELVALPVPSAEQVQAFLKEAEEIMQAKRQKRDRLLELEEDLETLELQLR 490
Score = 29.7 bits (67), Expect = 6.2
Identities = 71/439 (16%), Positives = 143/439 (32%), Gaps = 71/439 (16%)
Query: 255 EEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLF-----V 309
+E K+ E E+ E +L +T + +A + + + KEL+ L ++ +
Sbjct: 157 KELKEL---EAEIREVQLKTRTWKDLVKALDEAEEELANLRKELRQLEKEKQRLERLRRL 213
Query: 310 QDLQARIKKSVTAEESEDDGGSL-----AQRQKISFLENNLDQLTKVHKQLVRDNADLRC 364
L A K + + L + ++ L + + L L+
Sbjct: 214 LPLLAERKALEQQLAALGEVIDLPPDAVERYEE---ARAELRAARRNLELLTERLEALQA 270
Query: 365 ELPKLE--KRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDY 422
EL ++ + L A ++ + R +Y + ++ E +A+E L+ D
Sbjct: 271 ELDEISLDEELLAQAAAIEALHQQRGEYRNAEQDLPDREGEIANAREAAAALLAQIGPDA 330
Query: 423 EQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQ 482
++ E + + +AKE V E+ + E L +E + +E + + +L
Sbjct: 331 DE---EAVESLRPSLAAKETVTELEKRKEALDQALKSARDALEERERELKQVRAQLAALP 387
Query: 483 TTLNTTSTE--------LQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGS-------- 526
T I ++ + L + L +GL G
Sbjct: 388 TVTVPEPLRAALADALRAGDIDAALAALEQEVAVAKRELAQALSRLGLWRGDLEELVALP 447
Query: 527 -----------------EGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDEQVN 569
+ D +LEE+ L + + V +E+V
Sbjct: 448 VPSAEQVQAFLKEAEEIMQAKRQKRDRLLELEEDLETLELQLRHL--DAAGAVPTEEEVA 505
Query: 570 LA---------DPVDMAASIAPTPESAPASILPAIPGSGLMLGSLS-----NEERQKLEE 615
A D A + PT + ++ A + +L RQ+ E
Sbjct: 506 AARARRDALWQDIRRGYALLEPTASAYEEAVESADQLADRLLREAQLVGELQSLRQQEEA 565
Query: 616 ERERLYQQLDEKDEEINQQ 634
R R +QL+++ E +
Sbjct: 566 ARRR-LEQLEKELEVLELA 583
>gnl|CDD|219366 pfam07295, DUF1451, Protein of unknown function (DUF1451). This
family consists of several hypothetical bacterial
proteins of around 160 residues in length. Members of
this family contain four highly conserved cysteine
resides toward the C-terminal region of the protein. The
function of this family is unknown.
Length = 148
Score = 29.5 bits (67), Expect = 3.0
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 14/71 (19%)
Query: 397 MTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQA----LEE 452
+ RL++ + ++E+KE I A+ Y Q E+TR EE+ + LEE
Sbjct: 2 LDRLSERLKHTEKELKEAIEQAKE-YLQAAEELTR---------EELALIGAYLKRDLEE 51
Query: 453 LAVNYDQKSQE 463
+Y++ +
Sbjct: 52 FLRSYEETGEA 62
>gnl|CDD|237748 PRK14537, PRK14537, 50S ribosomal protein L20/unknown domain fusion
protein; Provisional.
Length = 230
Score = 30.3 bits (68), Expect = 3.1
Identities = 19/98 (19%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Query: 421 DYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTL 480
Y +L + Q K + + + L+E +N +++ ++ + L+EE
Sbjct: 108 QYVELAKKFLSQFQSTTITKPKKVLINEVLQEKTINQNEEKTSLQNEKVLSPELSEE--- 164
Query: 481 KQTTLNTTSTELQQIKDMSNH-QKKRINEMLTNLLKDL 517
K + T + Q+K+ + +++ML LK L
Sbjct: 165 KSDSELETQPQKTQLKEKKPSIEHIDLSKMLLKELKKL 202
>gnl|CDD|129130 TIGR00019, prfA, peptide chain release factor 1. This model
describes peptide chain release factor 1 (PrfA, RF-1),
and excludes the related peptide chain release factor 2
(PrfB, RF-2). RF-1 helps recognize and terminate
translation at UAA and UAG stop codons. The
mitochondrial release factors are prfA-like, although
not included above the trusted cutoff for this model.
RF-1 does not have a translational frameshift [Protein
synthesis, Translation factors].
Length = 360
Score = 30.4 bits (69), Expect = 3.3
Identities = 10/63 (15%), Positives = 32/63 (50%)
Query: 256 EHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQAR 315
+ K + KE + ++ +QA++D+K ++ + + + + K +++L+ +
Sbjct: 31 DQDKLRKLSKEYSQLEEIVDCYREYQQAQEDIKEAKEILEESDPEMREMAKEELEELEEK 90
Query: 316 IKK 318
I++
Sbjct: 91 IEE 93
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 30.4 bits (70), Expect = 3.3
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 20/117 (17%)
Query: 338 ISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEM 397
I + N + V++ R +++ L ER +L T E+LQ E
Sbjct: 4 IKLIRENPE--------AVKEALAKRGFPLDVDELLELDEERRELQTEL----EELQAER 51
Query: 398 TRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELA 454
L++E AK + + D E L E+ L +E ++ + E+ E+ LEEL
Sbjct: 52 NALSKEIGQAKRKGE--------DAEALIAEVKELKEEIKALEAELDELEAELEELL 100
>gnl|CDD|218661 pfam05622, HOOK, HOOK protein. This family consists of several
HOOK1, 2 and 3 proteins from different eukaryotic
organisms. The different members of the human gene
family are HOOK1, HOOK2 and HOOK3. Different domains
have been identified in the three human HOOK proteins,
and it was demonstrated that the highly conserved
NH2-domain mediates attachment to microtubules, whereas
the central coiled-coil motif mediates homodimerisation
and the more divergent C-terminal domains are involved
in binding to specific organelles (organelle-binding
domains). It has been demonstrated that endogenous HOOK3
binds to Golgi membranes, whereas both HOOK1 and HOOK2
are localised to discrete but unidentified cellular
structures. In mice the Hook1 gene is predominantly
expressed in the testis. Hook1 function is necessary for
the correct positioning of microtubular structures
within the haploid germ cell. Disruption of Hook1
function in mice causes abnormal sperm head shape and
fragile attachment of the flagellum to the sperm head.
Length = 713
Score = 30.5 bits (69), Expect = 3.5
Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 23/141 (16%)
Query: 387 RRDYEQLQGE--MTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVK 444
R +LQ E M RL QE E IT ++ E L + A + +
Sbjct: 458 REKLIRLQHENKMLRLGQE-----GSENERITELQQLLEDANRRNNELETQLRLANQRIL 512
Query: 445 EVLQALEELAVNYD----------QKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQ 494
E+ Q +E+L ++E ++ EEL K+ + EL+
Sbjct: 513 ELQQQVEDLQKALQEQGSKSEDSSLLKSKLEEHLEQLHEANEELQKKREQIE----ELEP 568
Query: 495 IKDMSNHQKKRINEMLTNLLK 515
+D + +K I E+ L K
Sbjct: 569 DQDQNLSRK--IAELEAALQK 587
Score = 29.8 bits (67), Expect = 6.3
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 31/115 (26%)
Query: 393 LQGEMTRLTQENESAKEEVKEL-------ITTARRDYEQLQGEMTRLTQEN---ESAKEE 442
LQ E L QENE +E + +L + Y LQ ++ +L +EN E+A+++
Sbjct: 205 LQEEKNSLQQENEKLQERLAQLEGSSLGPNQLGSKKYNLLQSQLEQLQEENFRLEAARDD 264
Query: 443 VKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKD 497
Y K +E+E + E + +ELT + + E Q +KD
Sbjct: 265 --------------YRIKCEELEKELAELQHRNDELT-------SLAAESQALKD 298
>gnl|CDD|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding. This
family is the highly conserved central region of a
number of metazoan proteins referred to as growth-arrest
proteins. In mouse, Gas8 is predominantly a testicular
protein, whose expression is developmentally regulated
during puberty and spermatogenesis. In humans, it is
absent in infertile males who lack the ability to
generate gametes. The localisation of Gas8 in the
motility apparatus of post-meiotic gametocytes and
mature spermatozoa, together with the detection of Gas8
also in cilia at the apical surfaces of epithelial cells
lining the pulmonary bronchi and Fallopian tubes
suggests that the Gas8 protein may have a role in the
functioning of motile cellular appendages. Gas8 is a
microtubule-binding protein localised to regions of
dynein regulation in mammalian cells.
Length = 201
Score = 29.9 bits (68), Expect = 3.6
Identities = 30/168 (17%), Positives = 72/168 (42%), Gaps = 12/168 (7%)
Query: 336 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQG 395
+ I L+ + ++ K + + A++ E +L + L+ E V+ + +DYE+ +
Sbjct: 27 ELIKSLKEEIAEMKKNEEHNEKLMAEIAQENKRLVEPLKKAEEEVEELRKKLKDYEKDKQ 86
Query: 396 EMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEE----VKEVLQALE 451
+ L + ++E+K L + + E L+ ++ +E + ++ +++V Q
Sbjct: 87 SLKNLKARLKELEKELKNL----KWESEVLEQRFEKVERERDELYDKFEAAIQDVQQKTG 142
Query: 452 ELAVNYDQKSQ----EVETKNKEFETLTEELTLKQTTLNTTSTELQQI 495
+ +QK + E+E K + + L L S +L +
Sbjct: 143 LKNLLLEQKLEALNEELEKKEAQLNEVLAAANLDPAALQAVSEKLDDV 190
>gnl|CDD|226081 COG3551, COG3551, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 402
Score = 30.4 bits (68), Expect = 3.9
Identities = 26/152 (17%), Positives = 52/152 (34%), Gaps = 2/152 (1%)
Query: 378 ERVKLITTARRDYEQ--LQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQE 435
E ++ + R D E L+ E +R E E + + ++ + ++ L
Sbjct: 251 EALQQLAVDRFDIEWKGLEREFSRAMPLLEYVGELLWQSASSHNESMTRFSEQVADLAMS 310
Query: 436 NESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQI 495
+ ++ + L E +Q + + ++ EEL Q L T L+
Sbjct: 311 YTAQRQLNDGLRDRLLEAGARDEQNERAMRELSRRLSVCREELVSAQRNLAETDNLLRDR 370
Query: 496 KDMSNHQKKRINEMLTNLLKDLCEIGLVIGSE 527
D ++ K L + + GSE
Sbjct: 371 DDTHARLMAILDSRFWRFTKPLRNLSRLFGSE 402
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists
of several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 30.3 bits (68), Expect = 4.1
Identities = 54/295 (18%), Positives = 119/295 (40%), Gaps = 51/295 (17%)
Query: 250 ESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTK----------ELQ 299
E+++AEE K ++ + + +L + ++ ++A++ + +++ +++ EL+
Sbjct: 129 EAAEAEEEAKLLKDKLDAESLKLQNEKEDQLKEAKESISRIKNDLSEMQCRAQNADTELK 188
Query: 300 TLHNLRKLFVQDLQARIKKSVTAEE-----SEDDGGSLAQRQKISFLENNLDQLTKVHKQ 354
L + + + L+ K+ AE+ + + S KI LE L + + +
Sbjct: 189 LLESELEELREQLEECQKELAEAEKKLQSLTSEQASSADNSVKIKHLEEEL-KRYEQDAE 247
Query: 355 LVRDNADLRCELPKLEKRLRATMERVKLITTARRDY----EQLQGEMTRLTQENESAKEE 410
+V+ + ++P+LE+ L A E + + + + D E+L+ +RL + E +E+
Sbjct: 248 VVKSMKEQLLQIPELERELAALREENRKLRSMKEDNELLKEELEDLQSRLERF-EKMREK 306
Query: 411 V-----------------KELITTA----------RRDYEQLQGEMTRLTQENESAKEEV 443
+ K L+ R LQ E +L ++N S
Sbjct: 307 LADLELEKEKLENELKSWKSLLQDIGLNLRTPDDLSRRIVVLQNEELQLKEKNGSISSSA 366
Query: 444 K---EVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQI 495
K LQ L+ + E++ K + + L L + T + L+ I
Sbjct: 367 KQLETTLQQLQLERQKAVSEILELKKKLEALKALVRRLQRRLTLVTKERDGLRAI 421
>gnl|CDD|163064 TIGR02894, DNA_bind_RsfA, transcription factor, RsfA family. In a
subset of endospore-forming members of the Firmcutes,
members of this protein family are found, several to a
genome. Two very strongly conserved sequences regions
are separated by a highly variable linker region. Much
of the linker region was excised from the seed alignment
for this model. A characterized member is the
prespore-specific transcription RsfA from Bacillus
subtilis, previously called YwfN, which is controlled by
sigma factor F and seems to fine-tune expression of some
genes in the sigma-F regulon. A paralog in Bacillus
subtilis is designated YlbO [Regulatory functions, DNA
interactions, Cellular processes, Sporulation and
germination].
Length = 161
Score = 29.3 bits (66), Expect = 4.4
Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 390 YEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQ 448
+ L +ENE K + + L E+L+ E+ +L Q + +E+ + ++
Sbjct: 92 LKTTNPSDQALQKENERLKNQNESLQKRN----EELEKELEKLRQRLSTIEEDYQTLID 146
>gnl|CDD|220484 pfam09943, DUF2175, Uncharacterized protein conserved in archaea
(DUF2175). This domain, found in various hypothetical
archaeal proteins, has no known function.
Length = 101
Score = 28.2 bits (63), Expect = 4.5
Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 605 LSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERR 664
L + +K++ ++ L ++ +++ A++L EQ+ E EE+ +
Sbjct: 31 LVEDASKKIKGDKPEDLVALLRLEDYLHEGIVLAKEL-EQVAESEEIK---------KVI 80
Query: 665 EQARKDLKGLEDTVTKELQTL 685
Q RKDL+ L +T++++ L
Sbjct: 81 RQVRKDLEKLAAKLTRKIEKL 101
>gnl|CDD|225115 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal
transduction mechanisms].
Length = 890
Score = 30.3 bits (69), Expect = 4.6
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 381 KLITTARRDYEQLQGEMTRL---TQENESAKEEVKELITTARRDYEQLQGEMTRLTQENE 437
KLI A R +L + T + T E E+ + R E+L E+ L +
Sbjct: 263 KLIRRAARLASRLHAKWTAVYVETPELHRLSEKEARRLHENLRLAEELGAEIVTLYGGDV 322
Query: 438 S 438
+
Sbjct: 323 A 323
>gnl|CDD|145958 pfam03084, Sigma_1_2, Reoviral Sigma1/Sigma2 family. Reoviruses
are double-stranded RNA viruses. They lack a membrane
envelope and their capsid is organised in two concentric
icosahedral layers: an inner core and an outer capsid
layer. The sigma1 protein is found in the outer capsid,
and the sigma2 protein is found in the core. There are
four other kinds of protein (besides sigma2) in the
core, termed lambda 1-3, mu2. Interactions between
sigma2 and lambda 1 and lambda 3 are thought to initiate
core formation, followed by mu2 and lambda2. Sigma1 is a
trimeric protein, and is positioned at the 12 vertices
of the icosahedral outer capsid layer. Its N-terminal
fibrous tail, arranged as a triple coiled coil, anchors
it in the virion, and a C-terminal globular head
interacts with the cellular receptor. These two parts
form by separate trimerisation events. The N-terminal
fibrous tail forms on the polysome, without the
involvement of ATP or chaperones. The post-
translational assembly of the C-terminal globular head
involves the chaperone activity of Hsp90, which is
associated with phosphorylation of Hsp90 during the
process. Sigma1 protein acts as a cell attachment
protein, and determines viral virulence, pathways of
spread, and tropism. Junctional adhesion molecule has
been identified as a receptor for sigma1. In type 3
reoviruses, a small region, predicted to form a beta
sheet, in the N-terminal tail was found to bind target
cell surface sialic acid (i.e. sialic acid acts as a
co-receptor) and promote apoptosis. The sigma1 protein
also binds to the lambda2 core protein.
Length = 415
Score = 30.2 bits (68), Expect = 4.6
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 8/50 (16%)
Query: 601 MLGSLSNEERQKLEEE--------RERLYQQLDEKDEEINQQSQYAEKLK 642
G +S + Q+L + R +L E D NQ YA ++K
Sbjct: 343 RAGLISQAKGQQLTQNADDTQQFKRAKLEAIKAEDDALYNQNPNYARRIK 392
>gnl|CDD|233228 TIGR00998, 8a0101, efflux pump membrane protein (multidrug
resistance protein A). [Transport and binding proteins,
Other].
Length = 334
Score = 29.8 bits (67), Expect = 4.9
Identities = 29/145 (20%), Positives = 52/145 (35%), Gaps = 22/145 (15%)
Query: 341 LENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRL 400
E NL L + KQL L+ ++ L+ +L E++ R L
Sbjct: 85 AEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVP-------L 137
Query: 401 TQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQK 460
++ ++EE+ AR+ + + QE +A + + ++ AV
Sbjct: 138 FKKGLISREEL----DHARKALLSAKAALNAAIQEQLNANQALVRGTPLKKQPAV----- 188
Query: 461 SQEVETKNKEFETLTEELTLKQTTL 485
E K T L LK+T +
Sbjct: 189 ---QEAKE---RLKTAWLALKRTVI 207
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 140
Score = 28.7 bits (65), Expect = 5.2
Identities = 15/83 (18%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 388 RDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVL 447
++ + +L +E + + E+++L ++ E+LQ + L++ KE KE+
Sbjct: 11 QESPAGKAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKE--KELQ 68
Query: 448 QALEELAVNYDQKSQEVETKNKE 470
+ ++E + Q+++ + +E
Sbjct: 69 KKVQEFQRKQQKLQQDLQKRQQE 91
>gnl|CDD|233065 TIGR00634, recN, DNA repair protein RecN. All proteins in this
family for which functions are known are ATP binding
proteins involved in the initiation of recombination and
recombinational repair [DNA metabolism, DNA replication,
recombination, and repair].
Length = 563
Score = 30.1 bits (68), Expect = 5.2
Identities = 39/206 (18%), Positives = 77/206 (37%), Gaps = 25/206 (12%)
Query: 262 EYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVT 321
E + + GE L +R K L + L L + L + ++
Sbjct: 203 EADLQPGEDEALEAEQQRLSNLEK----LRELSQNALAALRGDVDVQEGSLLEGLGEAQL 258
Query: 322 AEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVK 381
A S DG + R+ + N L ++ + ++L EL +RL ER+
Sbjct: 259 ALASVIDG---SLRELAEQVGNALTEVEEATRELQN----YLDELEFDPERLNEIEERLA 311
Query: 382 LITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKE 441
I +R Y + + + E KEE+ +L + E L+ E+ +L +E
Sbjct: 312 QIKRLKRKY---GASVEEVLEYAEKIKEELDQL-DDSDESLEALEEEVDKLEEE------ 361
Query: 442 EVKEVLQALEELAVNYDQKSQEVETK 467
+ +A L++ + ++ + +
Sbjct: 362 ----LDKAAVALSLIRRKAAERLAKR 383
>gnl|CDD|220402 pfam09787, Golgin_A5, Golgin subfamily A member 5. Members of this
family of proteins are involved in maintaining Golgi
structure. They stimulate the formation of Golgi stacks
and ribbons, and are involved in intra-Golgi retrograde
transport. Two main interactions have been
characterized: one with RAB1A that has been activated by
GTP-binding and another with isoform CASP of CUTL1.
Length = 509
Score = 29.8 bits (67), Expect = 5.2
Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 394 QGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEL 453
Q E+ L E+E +EE+ +L + + Q + E ES +++ +E+ Q +
Sbjct: 271 QIELEELKHESEHVQEEITKLEGQIIQLRSEAQDREAEASGEAESFRKQPRELSQQIAPQ 330
Query: 454 AVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQ 494
QE+E +E E+L + + LN T +
Sbjct: 331 I----TTKQELELYYQELYHYREDLGNQSSPLNIRLTFRES 367
>gnl|CDD|113664 pfam04899, MbeD_MobD, MbeD/MobD like. The MbeD and MobD proteins
are plasmid encoded, and are involved in the plasmids
mobilisation and transfer in the presence of conjugative
plasmids.
Length = 70
Score = 27.5 bits (61), Expect = 5.2
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 391 EQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVK 444
EQLQ + + QE ESA E++ + +R+ L ++T L+Q+ +S E+V+
Sbjct: 13 EQLQQDYEQRLQEWESAFAELQRMFGLTQRENAALSEQVTGLSQQVQSLSEQVR 66
>gnl|CDD|217163 pfam02646, RmuC, RmuC family. This family contains several
bacterial RmuC DNA recombination proteins. The function
of the RMUC protein is unknown but it is suspected that
it is either a structural protein that protects DNA
against nuclease action, or is itself involved in DNA
cleavage at the regions of DNA secondary structures.
Length = 301
Score = 29.6 bits (67), Expect = 5.3
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 445 EVLQALEELAVNYDQKSQEVETK-NKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQK 503
++L+ ++E ++Q+ +E K +E E L E L Q + E+ + + K
Sbjct: 6 QMLKPVDETLQTFEQRVEESFEKVAEELERLQEGLGELQELNQQLAKEVGNLTAALKNPK 65
Query: 504 KRIN--EM-LTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTV 546
R N E+ L +L+D GL G + + +V+ G+L +F +
Sbjct: 66 TRGNWGEVQLERILED---SGLPEGLDYETQVSLSEGGRLRPDFAI 108
>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production
and conversion].
Length = 161
Score = 28.8 bits (65), Expect = 5.4
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 383 ITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQEN-----E 437
+ A R E+ Q + QE E A+E+ E+I A+++ EQ+ E+ +E E
Sbjct: 46 LAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKE 105
Query: 438 SAKEEVK-EVLQALEEL 453
+A+ E++ E +ALEEL
Sbjct: 106 AAEAEIEAEKERALEEL 122
>gnl|CDD|218434 pfam05103, DivIVA, DivIVA protein. The Bacillus subtilis divIVA1
mutation causes misplacement of the septum during cell
division, resulting in the formation of small, circular,
anucleate mini-cells. Inactivation of divIVA produces a
mini-cell phenotype, whereas overproduction of DivIVA
results in a filamentation phenotype. These proteins
appear to contain coiled-coils.
Length = 131
Score = 28.4 bits (64), Expect = 5.5
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 408 KEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEL 453
+EV E + +DYE L E L +E E +E+++E + E L
Sbjct: 20 PDEVDEFLDQVIKDYEALYKENEELKEEIERLEEKLEEYKELEETL 65
>gnl|CDD|227612 COG5293, COG5293, Predicted ATPase [General function prediction
only].
Length = 591
Score = 29.9 bits (67), Expect = 5.8
Identities = 48/304 (15%), Positives = 103/304 (33%), Gaps = 35/304 (11%)
Query: 164 LINVKQENLENEKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAGKLEE 223
K + LE++KKL+ L + GS + + + + K + + +
Sbjct: 197 EYYDKIQELESKKKLAELLRKTWI-GSLDSLEEIETTELRKQDEVNKKQATLNTFDFHAQ 255
Query: 224 EFTVARLYISKMKSEVKNLVARCTSMESS-QAEEHKKAIEYEKELGETRLLLQTNERREQ 282
++ ++ + + L R SM+S + + + E ++L E+
Sbjct: 256 DYAETEELVNTVDERIAELNNRRISMQSHWKRVKTSLKEQILFCPDEIQVLY------EE 309
Query: 283 ARKDLKGLEDTVTKELQTLHNL----RKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKI 338
G + + + R ++Q+ A I+ + +E D + + +
Sbjct: 310 VGVLFPGQVKKDFEHVIAFNRAITEERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGL 369
Query: 339 SFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMT 398
+FL+N K ++ L + LR EL +LE R +L
Sbjct: 370 AFLKNR-GVFEK-YQTLCEEIIALRGELAELEYR--------------IEPLRKLH---- 409
Query: 399 RLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYD 458
++ E + R Y ++Q + + KE ++EV L V +
Sbjct: 410 ---ALDQYIGTLKHECLDLEERIYTEVQQQCSLFASIGRLFKEMIREVYDCYGSLRVTTN 466
Query: 459 QKSQ 462
+
Sbjct: 467 KNGH 470
>gnl|CDD|240376 PTZ00350, PTZ00350, adenylosuccinate synthetase; Provisional.
Length = 436
Score = 29.6 bits (67), Expect = 5.8
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 598 SGLMLGSLSNEE------RQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQI 645
+GL +G L N E R+ +E+ +E+ + + +EE+ + YAEKLK+ I
Sbjct: 157 TGLRVGDLLNFETFEKKYRKLVEKLQEQYNIEEYDAEEELERYKGYAEKLKDMI 210
>gnl|CDD|132364 TIGR03321, alt_F1F0_F0_B, alternate F1F0 ATPase, F0 subunit B. A
small number of taxonomically diverse prokaryotic
species, including Methanosarcina barkeri, have what
appears to be a second ATP synthase, in addition to the
normal F1F0 ATPase in bacteria and A1A0 ATPase in
archaea. These enzymes use ion gradients to synthesize
ATP, CC and in principle may run in either direction.
This model represents the F0 subunit B of this apparent
second ATP synthase.
Length = 246
Score = 29.2 bits (66), Expect = 6.0
Identities = 29/148 (19%), Positives = 62/148 (41%), Gaps = 19/148 (12%)
Query: 386 ARRDYEQL-----QGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTR-LTQENESA 439
RR+YE+ Q LT+ E A+ E + L+ AR + ++++ + L +E +
Sbjct: 58 ERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAAL 117
Query: 440 KEEVK-----EVLQA----LEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTST 490
+E++ EV L +LA + D + + V+ + TL + S
Sbjct: 118 SDELRRRTGAEVFAIARKVLTDLA-DTDLEERMVDVFVQRLRTLDPDEKAALAEALADSG 176
Query: 491 E---LQQIKDMSNHQKKRINEMLTNLLK 515
++ ++ Q+++I + + L
Sbjct: 177 NPVLVRSAFELPEEQREQIRDTIRETLG 204
>gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces
cerevisiae Ssq1 and similar proteins. Ssq1p (also
called Stress-seventy subfamily Q protein 1, Ssc2p,
Ssh1p, mtHSP70 homolog) belongs to the heat shock
protein 70 (HSP70) family of chaperones that assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial
chaperone that is involved in iron-sulfur (Fe/S) center
biogenesis. Ssq1p plays a role in the maturation of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia).
Length = 373
Score = 29.8 bits (67), Expect = 6.1
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Query: 411 VKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKE 470
+KE + D + + + R+ + E AK E+ +++ EL K + +E
Sbjct: 236 IKEFKRKYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYLDGPKHLRITITRRE 295
Query: 471 FETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEML 510
FE L + + + T Q +KD + +KK I+E++
Sbjct: 296 FEQLRKSICKR-----TIYPCKQCLKD-AGLRKKDIDEVI 329
>gnl|CDD|144876 pfam01442, Apolipoprotein, Apolipoprotein A1/A4/E domain. These
proteins contain several 22 residue repeats which form a
pair of alpha helices. This family includes:
Apolipoprotein A-I. Apolipoprotein A-IV. Apolipoprotein
E.
Length = 191
Score = 29.1 bits (66), Expect = 6.1
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 602 LGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQ-YAEKLKEQIMEQEEVSGLLVCGQT 660
LG + E +L +E E L ++L + E++ + Q Y ++LK ++ + E +
Sbjct: 21 LGPYAQEFWARLSKETEALREELQKDLEDVRARLQPYLDELKAKVGQNLEELRQRLAPYA 80
Query: 661 NERREQARKDLKGLEDTVT 679
E R++ +D + L +
Sbjct: 81 EELRKRLNRDAEELRRKLA 99
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 29.6 bits (67), Expect = 6.2
Identities = 29/145 (20%), Positives = 64/145 (44%), Gaps = 20/145 (13%)
Query: 381 KLITTARRDYEQLQGEMTRLTQE-----NESAKEEVKELITTARRDYEQLQ-----GEMT 430
LI +A+ + +QL ++ L E + KE+ +EL++ +
Sbjct: 163 SLIASAKEELDQLSKKLAELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEK 222
Query: 431 RLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTST 490
+L E E KEE+++ + E+L +++++ E K L EL L+ L
Sbjct: 223 QLRLEFEREKEELRKKYE--EKLRQELERQAEAHEQK------LKNELALQAIELQREFN 274
Query: 491 EL--QQIKDMSNHQKKRINEMLTNL 513
+ +++++ N + ++ E+ + L
Sbjct: 275 KEIKEKVEEERNGRLAKLAELNSRL 299
>gnl|CDD|236808 PRK10963, PRK10963, hypothetical protein; Provisional.
Length = 223
Score = 29.1 bits (66), Expect = 6.4
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 334 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRAT 376
QR I LE + L + N DL L L+ RL A
Sbjct: 49 QRNHIHVLEEEMTLLM----EQAIANEDLFYRLLPLQSRLAAA 87
>gnl|CDD|180871 PRK07191, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 456
Score = 29.8 bits (67), Expect = 6.4
Identities = 15/75 (20%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 607 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQE----EVSGLLVCGQTNE 662
N + ++++ + QQ D ++IN ++ ++I++ +S LL +
Sbjct: 144 NNVNNFIVQQKKSIGQQRDATVKQINSLTRSIADYNQKILKNRSDGNNISDLL------D 197
Query: 663 RREQARKDLKGLEDT 677
+R+ K L GL +
Sbjct: 198 QRDLQIKKLSGLIEV 212
>gnl|CDD|215969 pfam00521, DNA_topoisoIV, DNA gyrase/topoisomerase IV, subunit A.
Length = 427
Score = 29.4 bits (67), Expect = 6.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 602 LGSLSNEERQKLEEERERLYQQLDE 626
L L+ EE +KLE+E E L +++ E
Sbjct: 386 LRRLTKEEIEKLEKEIEELEKEIAE 410
>gnl|CDD|219934 pfam08614, ATG16, Autophagy protein 16 (ATG16). Autophagy is a
ubiquitous intracellular degradation system for
eukaryotic cells. During autophagy, cytoplasmic
components are enclosed in autophagosomes and delivered
to lysosomes/vacuoles. ATG16 (also known as Apg16) has
been shown to be bind to Apg5 and is required for the
function of the Apg12p-Apg5p conjugate in the yeast
autophagy pathway.
Length = 194
Score = 29.0 bits (65), Expect = 6.5
Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 12/162 (7%)
Query: 346 DQLTKVHKQLVRDN---ADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQ 402
D+ K +L AD L L+A + ++ + +
Sbjct: 13 DRREKAFSELFEQYRQLADRTRLLKVENDALQAEKYEQQSSHSSSPSADGPGSDAAIAEM 72
Query: 403 ENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQ 462
E + AK ++E +T + +L + L E E + E++++ + + EL
Sbjct: 73 EQKLAK--LREELTELHKKRGELAQRLLLLNDELEQLRREIQQLEKTIAELRSEITSLET 130
Query: 463 EV-------ETKNKEFETLTEELTLKQTTLNTTSTELQQIKD 497
E+ + K K+ ETL +EL LN +L++++
Sbjct: 131 EIRDLREELQEKEKDNETLQDELISLNIELNALEEKLRKLQK 172
>gnl|CDD|223020 PHA03246, PHA03246, large tegument protein UL36; Provisional.
Length = 3095
Score = 29.9 bits (67), Expect = 6.6
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 398 TRLTQENESAKEEVKELITTA---------RRDYEQLQGEMTRLTQENESAKEEVKEVLQ 448
T ++ + KE++ EL TA RRD + ++ R+T E+AK + +L+
Sbjct: 1617 TIMSIADALQKEKITELDGTAYAEYSAHILRRDNDAIKSITQRVTTAIEAAKSRGESILK 1676
Query: 449 ALEELAVNYDQKSQE 463
L E + D+++ E
Sbjct: 1677 DLAEASYAADRETAE 1691
>gnl|CDD|233137 TIGR00811, sit, silicon transporter. Marine diatoms such as
Cylindrotheca fusiformis encode at least six silicon
transport protein homologues which exhibit similar size
and topology. One characterized member of the family
(Sit1) functions in the energy-dependent uptake of
either Silicic acid [Si(OH)4] or Silicate [Si(OH)3O-] by
a Na+ symport mechanism. The system is found in marine
diatoms which make their "glass houses" out of silicon
[Transport and binding proteins, Other].
Length = 545
Score = 29.6 bits (66), Expect = 6.6
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Query: 202 VLDEAKNINKSLSADGAGKLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAI 261
VL++ N ++++ A E F+V R + K E++ ++ S E E A+
Sbjct: 460 VLNDPANWEEAIANLSA---LETFSVRRERMLKNIRELREMINNAISDEEKTTFE--AAL 514
Query: 262 EYEKELGETRLLLQTNERREQARKDLKGLEDT 293
E + L + N E+ + K +DT
Sbjct: 515 AI-----EVKALDKLNAEEEEEATNKKEGKDT 541
>gnl|CDD|112929 pfam04136, Sec34, Sec34-like family. Sec34 and Sec35 form a
sub-complex, in a seven protein complex that includes
Dor1 (pfam04124). This complex is thought to be
important for tether vesicles to the Golgi.
Length = 157
Score = 28.7 bits (64), Expect = 6.8
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 4/74 (5%)
Query: 421 DYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTL 480
D E+ + T + + L L Y+ V K E E+L+
Sbjct: 1 DAEKKINYLQTFTNICDQILGQTNNAESTLLSLKEKYEF----VSKKTSELSEACEQLST 56
Query: 481 KQTTLNTTSTELQQ 494
+Q L+ + +Q+
Sbjct: 57 EQMRLSELADGIQK 70
>gnl|CDD|227780 COG5493, COG5493, Uncharacterized conserved protein containing a
coiled-coil domain [Function unknown].
Length = 231
Score = 29.1 bits (65), Expect = 7.0
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 369 LEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGE 428
L + L +L T ++D E+L+ E + +E K EV++ T E L+
Sbjct: 29 LYEVLAKLTPWQQLAT--KQDVEELRKETEQRQKELADEKLEVRKQKATK----EDLKLL 82
Query: 429 MTRLTQENESAKEEVKEVLQALEELA 454
+E + KE++K + + L
Sbjct: 83 QRFQEEEFRATKEDIKRLETIITGLG 108
>gnl|CDD|173155 PRK14692, PRK14692, lagellar hook-associated protein FlgL;
Provisional.
Length = 749
Score = 29.5 bits (66), Expect = 7.6
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 430 TRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTL---KQTTLN 486
TRL E ++ E+VKE +E+ N + Q++ ++F+ + QT+
Sbjct: 50 TRLEYEIKTL-EQVKESTSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSNSQTSRE 108
Query: 487 TTSTELQQIKD 497
+ EL++IK+
Sbjct: 109 AIAKELERIKE 119
>gnl|CDD|226883 COG4477, EzrA, Negative regulator of septation ring formation [Cell
division and chromosome partitioning].
Length = 570
Score = 29.3 bits (66), Expect = 8.1
Identities = 51/278 (18%), Positives = 112/278 (40%), Gaps = 33/278 (11%)
Query: 220 KLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNER 279
++ + + + + L E +AEE I+ + E L ER
Sbjct: 252 NIDSRLERLKEQLVENSELLTQL-------ELDEAEEELGLIQEKIES-----LYDLLER 299
Query: 280 REQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQK-I 338
+A+ ++ + L+ + +++ R+K+S +E + GS+ + +K +
Sbjct: 300 EVEAKNVVEENLPILPDYLEKAKENNEHLKEEI-ERVKESYRL--AETELGSVRKFEKEL 356
Query: 339 SFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMT 398
LE+ LD++ + + ++L+ L ++EK L T + E++Q +T
Sbjct: 357 KELESVLDEILENIEAQEVAYSELQDNLEEIEKAL----------TDIEDEQEKVQEHLT 406
Query: 399 RLTQENESAKEE----VKELITTARR-DYEQLQGEMTRLTQENESAKEEVKEVLQALEEL 453
L ++ A+E +L R + L G +A E++++++ L E+
Sbjct: 407 SLRKDELEARENLERLKSKLHEIKRYMEKSNLPGLPETFLSLFFTAGHEIQDLMKELSEV 466
Query: 454 AVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTE 491
+N + S V+ ++ TL +E + N E
Sbjct: 467 PINMEAVSALVDIATEDMNTLEDETE--EVVENAVLAE 502
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 29.0 bits (66), Expect = 8.2
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 389 DYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENE 437
E L+ + L ++ + ++++L A E+L+ E+ RL E E
Sbjct: 2 RLEALEERNSELEEQIRQLELKLRDL--EAEN--EKLERELERLKSELE 46
>gnl|CDD|218351 pfam04961, FTCD_C, Formiminotransferase-cyclodeaminase. Members of
this family are thought to be Formiminotransferase-
cyclodeaminase enzymes EC:4.3.1.4. This domain is found
in the C-terminus of the bifunctional animal members of
the family.
Length = 176
Score = 28.7 bits (65), Expect = 8.3
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 384 TTARRDYEQLQGEMTRLTQENESAKEEVKELI 415
T ++ YE ++ EM + ++ E +EE+ L
Sbjct: 41 TIGKKKYEDVEEEMKEILEKAEELREELLALA 72
>gnl|CDD|221919 pfam13094, CENP-Q, CENP-A-nucleosome distal (CAD) centromere
subunit. CENP-Q is one of the components that assembles
onto the CENP-A-nucleosome distal (CAD) centromere. The
centromere, which is the basic element of chromosome
inheritance, is epigenetically determined in mammals.
CENP-A, the centromere-specific histone H3 variant,
assembles an array of nucleosomes and it is this that
seems to be the prime candidate for specifying
centromere identity. CENP-A nucleosomes directly recruit
a proximal CENP-A nucleosome associated complex (NAC)
comprised of CENP-M, CENP-N and CENP-T, CENP-U(50),
CENP-C and CENP-H. Assembly of the CENP-A NAC at
centromeres is dependent on CENP-M, CENP-N and CENP-T.
Additionally, there are seven other subunits which make
up the CENP-A-nucleosome distal (CAD) centromere,
CENP-K, CENP-L, CENP-O, CENP-P, CENP-Q, CENP-R and
CENP-S, also assembling on the CENP-A NAC. Fta7 is the
equivalent component of the fission yeast Sim4 complex.
Length = 159
Score = 28.5 bits (64), Expect = 8.6
Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 25/123 (20%)
Query: 391 EQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 450
E L+ E+ R E E E ++EL A+ L +E E + + VL+ L
Sbjct: 44 ELLEEEIRREEAELEKDLEYLQELEKNAKA-----------LEREREEESKNLHPVLRLL 92
Query: 451 EELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEML 510
E + ++ Q+ L+ + N + ++ D+ K + +
Sbjct: 93 ESEVLEENELLQDSL--------------LELSERNFSPNLDPELLDLLKQLNKHLESLQ 138
Query: 511 TNL 513
NL
Sbjct: 139 GNL 141
>gnl|CDD|226127 COG3599, DivIVA, Cell division initiation protein [Cell division
and chromosome partitioning].
Length = 212
Score = 28.6 bits (64), Expect = 8.7
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 407 AKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAV 455
+EEV E + DYEQL E L E + KEE+KE A + A+
Sbjct: 24 DEEEVDEFLDDVIDDYEQLLDENEDLEDEIDELKEELKEAADAEDSQAI 72
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation,
interacts with SMC proteins [Cell division and
chromosome partitioning].
Length = 622
Score = 29.2 bits (65), Expect = 8.8
Identities = 25/131 (19%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 348 LTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESA 407
K + D A+L+ + L ++++ M+ + I T R + L+ + + + +A
Sbjct: 262 FEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKY-ENYVNA 320
Query: 408 KEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETK 467
++ + E+L+ E+ +E ++ + + E+ + L + ++ +++ E
Sbjct: 321 MKQKSQEWPGK---LEKLKSEIELKEEEIKALQSNIDELHKQLRKQGIS----TEQFELM 373
Query: 468 NKEFETLTEEL 478
N+E E LT EL
Sbjct: 374 NQEREKLTREL 384
>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated.
Length = 343
Score = 29.2 bits (66), Expect = 9.2
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 602 LGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVS 652
+ +L E ER RL L E A +L +++ +++VS
Sbjct: 83 VANLRASLSAA-EAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVS 132
>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family.
HSP70 (70-kDa heat shock protein) family chaperones
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some HSP70 family members are not
chaperones but instead, function as NEFs to remove ADP
from their HSP70 chaperone partners during the ATP
hydrolysis cycle, some may function as both chaperones
and NEFs.
Length = 369
Score = 29.1 bits (66), Expect = 9.3
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 429 MTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEEL 478
+ RL + E AK + +A L EVE +EFE L L
Sbjct: 252 LRRLKEAAEKAKIALSSSEEATITLPGLGSGGDLEVELTREEFEELIRPL 301
>gnl|CDD|220410 pfam09798, LCD1, DNA damage checkpoint protein. This is a family
of proteins which regulate checkpoint kinases. In
Schizosaccharomyces pombe this protein is called Rad26
and in Saccharomyces cerevisiae it is called LCD1.
Length = 648
Score = 29.4 bits (66), Expect = 9.3
Identities = 17/117 (14%), Positives = 35/117 (29%), Gaps = 12/117 (10%)
Query: 335 RQKISFLENNLDQLTKVHKQLVRDN----------ADLRCELPKLEKRLRATMERVKLIT 384
R K+ L+ + + +KQ R N L+ EL LE + + + ++
Sbjct: 3 RDKLDMLQQQKQE--ERNKQKSRVNELKEKHDQELQKLKQELQSLEDERKFLVLEQRGLS 60
Query: 385 TARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKE 441
E T + +E + ++ E+ L +
Sbjct: 61 ANDLRTELSPPSNLLKTSDASHIADESQPNSIKQKKREISPVKELVPLNPNRIIKDD 117
>gnl|CDD|218762 pfam05816, TelA, Toxic anion resistance protein (TelA). This
family consists of several prokaryotic TelA like
proteins. TelA and KlA are associated with tellurite
resistance and plasmid fertility inhibition.
Length = 333
Score = 29.1 bits (66), Expect = 9.6
Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
Query: 368 KLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQG 427
KL + + ++ER Y+ + G++ ++ E E K+E+ + + Y++
Sbjct: 77 KLFGKAKNSIERYF------AKYQSVGGQIDKILVELEKGKDELLKDNAMLDQLYDKNLE 130
Query: 428 EMTRLTQENESAK---EEVKEVLQALEELAVNYDQ-KSQEV 464
L + + K E++ L E DQ +QE+
Sbjct: 131 YYEELEKYIAAGKLKLAELEAKLLPELEEKAEGDQMAAQEL 171
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.127 0.336
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 35,273,981
Number of extensions: 3524113
Number of successful extensions: 7798
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6379
Number of HSP's successfully gapped: 1014
Length of query: 720
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 616
Effective length of database: 6,324,786
Effective search space: 3896068176
Effective search space used: 3896068176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (27.9 bits)