RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5718
(720 letters)
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 208 bits (531), Expect = 2e-61
Identities = 78/264 (29%), Positives = 116/264 (43%), Gaps = 61/264 (23%)
Query: 12 AAEDSIRVVCRFRPLNHSEEKAGS-KFIVKFPSGGEENGLSLGG---KFYLFDKVFKPNA 67
++ +IRV+ R RP+ + + V F + + L + DKVF P A
Sbjct: 1 GSKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQA 60
Query: 68 TQEKVYDEAAKSIVSV------------Q--------------------------FVDAD 89
+Q+ V+ E + S Q F +
Sbjct: 61 SQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQ 120
Query: 90 ------QYMVSV-----------DRLRSDHQLKAS-TMCEHSLMHLIVFPGATERFVGKP 131
+Y ++V D L + Q K +C L V PG TE V
Sbjct: 121 EKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYV-PGLTEFQVQSV 179
Query: 132 EEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSE 191
+++ +V E G NR TN+NEHSSRSH++ ++ V+ + + +GKL LVDLAGSE
Sbjct: 180 DDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSE 239
Query: 192 KVSKTGAEGTVLDEAKNINKSLSA 215
+V K+GAEG+ L EA++INKSLSA
Sbjct: 240 RVGKSGAEGSRLREAQHINKSLSA 263
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 190 bits (486), Expect = 9e-55
Identities = 65/275 (23%), Positives = 113/275 (41%), Gaps = 74/275 (26%)
Query: 13 AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEE------------NGLSLGGKFYLFD 60
+ D+I+V+ R RPLN E + + I++ + + + FD
Sbjct: 2 SSDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFD 61
Query: 61 KVFKPNATQEKVYDEAAKSIV--------------------------------------- 81
V+ + ++ + K ++
Sbjct: 62 AVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSF 121
Query: 82 -----SVQFVDAD-QYMVSV-----------DRLRSDHQLKASTMCEHSLMHLIVFPGAT 124
++ ++ ++V D ++++ +L + E + V G +
Sbjct: 122 KHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTKLP---LKEDKTRGIYV-DGLS 177
Query: 125 ERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKL--SGKL 182
V E+ ++++G ANRH+A T MN+ SSRSHS+F++ ++ + K++ GKL
Sbjct: 178 MHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKL 237
Query: 183 YLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
LVDLAGSE+ SKTGA G L E IN SLSA G
Sbjct: 238 NLVDLAGSERQSKTGATGETLVEGAKINLSLSALG 272
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 175 bits (445), Expect = 4e-49
Identities = 59/275 (21%), Positives = 90/275 (32%), Gaps = 80/275 (29%)
Query: 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL---------GGKFYLFDK----- 61
+IRV CR RP + E + + I S+ + FDK
Sbjct: 4 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQ 63
Query: 62 -----VFK---------------------------------------PNATQE---KVYD 74
VFK P+ +
Sbjct: 64 DTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINK 123
Query: 75 EAAKSI---VSVQFV-----------DADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF 120
K V+ +F+ +D + H+++
Sbjct: 124 LKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR-----HDQETKTTTI 178
Query: 121 PGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSG 180
T + E V ++++ R A T NEHSS SHS+F+I++ N + G
Sbjct: 179 TNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYG 238
Query: 181 KLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
L LVDLAGSE+++ + G L E +NINKSLS
Sbjct: 239 TLNLVDLAGSERINVSQVVGDRLRETQNINKSLSC 273
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 175 bits (445), Expect = 4e-49
Identities = 58/273 (21%), Positives = 94/273 (34%), Gaps = 75/273 (27%)
Query: 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL--------GGKFYLFDK------ 61
+IRV CR RP +E + S +++ + + + FD
Sbjct: 6 NIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSH 65
Query: 62 ----VFK---------------------------------------PNATQE---KVYDE 75
+F+ P +
Sbjct: 66 TNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGDGMIPMTLSHIFKWTANL 125
Query: 76 AAKSI---VSVQFVDADQYMVSV-DRLRSDHQLKASTMCEHSLMHLIVF---------PG 122
+ + ++++ Y ++ D LR S H I
Sbjct: 126 KERGWNYEMECEYIEI--YNETILDLLRDFKSHDNIDEILDSQKHDIRHDHEKQGTYITN 183
Query: 123 ATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKL 182
T + +V ++++ R A T NE SSRSHSVF++++ NL + GKL
Sbjct: 184 VTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGETSQGKL 243
Query: 183 YLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
LVDLAGSE+++ + G L E +NINKSLS
Sbjct: 244 NLVDLAGSERINSSAVTGERLRETQNINKSLSC 276
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 173 bits (441), Expect = 1e-48
Identities = 53/278 (19%), Positives = 88/278 (31%), Gaps = 80/278 (28%)
Query: 2 SNNAPADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFY---- 57
+ E A ++R+ R P +V+FP + L + +
Sbjct: 9 DDKRRRGMEGAKLSAVRIAVREAPYR-QFLGRREPSVVQFPPWSDGKSLIVDQNEFHFDH 67
Query: 58 ----------LFDKVFKP---------NAT-------------------QEKVYDEAA-- 77
++ + P T ++ E
Sbjct: 68 AFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGI 127
Query: 78 ---------KSIVSVQFVDADQYMVSV-----------DRLRSDHQLKASTMCEHSLMHL 117
+ + + Q + D V D L S ++
Sbjct: 128 LPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTP--------HMPMVAA 179
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKK 177
T + ++ ++E G NR + TNMN +SSRSH++ I+VK K
Sbjct: 180 RC-QRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKS------KT 232
Query: 178 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
++ +VDLAGSE V +TG EG E NIN L +
Sbjct: 233 HHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLS 270
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A*
2kin_A* 3kin_A*
Length = 325
Score = 166 bits (423), Expect = 3e-46
Identities = 78/98 (79%), Positives = 86/98 (87%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKK 177
G TERFV P+EV + I+EGK+NRH+AVTNMNEHSSRSHS+FLINVKQEN + E+K
Sbjct: 163 PYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQK 222
Query: 178 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
LSGKLYLVDLAGSEKVSKTGAEG VLDEAKNINKSLSA
Sbjct: 223 LSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSA 260
Score = 84.9 bits (211), Expect = 4e-18
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 12 AAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPNATQEK 71
AE +I+V+CRFRPLN SE G K+I KF E+ + + K Y FD+VF+ + +QE+
Sbjct: 4 LAECNIKVMCRFRPLNESEVNRGDKYIAKFQG---EDTVVIASKPYAFDRVFQSSTSQEQ 60
Query: 72 VYDEAAKSIV 81
VY++ AK IV
Sbjct: 61 VYNDCAKKIV 70
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 165 bits (419), Expect = 2e-45
Identities = 64/264 (24%), Positives = 101/264 (38%), Gaps = 61/264 (23%)
Query: 12 AAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFY-------------- 57
A E ++ V R RPLN EE G V + + G K +
Sbjct: 1 AEEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNETTKN 60
Query: 58 LFDKVFKP---------NAT-----QE---KVY----DEAAKSIV---------SVQFVD 87
+++++ P N T Q K Y E ++ ++
Sbjct: 61 VYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFP 120
Query: 88 ADQYMVSV-----------DRLRSDHQLKASTMCEHSLMHLIVFPGATERFVGKPEEVFE 136
++++ V D L ++K + E ++ V TE V E +
Sbjct: 121 DREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYV-ADLTEEVVYTSEMALK 179
Query: 137 VIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKK-----LSGKLYLVDLAGSE 191
I +G+ +RH T MN+ SSRSH++F + ++ L LVDLAGSE
Sbjct: 180 WITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSE 239
Query: 192 KVSKTGAEGTVLDEAKNINKSLSA 215
+ ++TGA G L E NIN+SL
Sbjct: 240 RAAQTGAAGVRLKEGCNINRSLFI 263
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 163 bits (414), Expect = 1e-44
Identities = 90/100 (90%), Positives = 93/100 (93%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKK 177
GATERFV PE+VFEVIEEGK+NRHIAVTNMNEHSSRSHSVFLINVKQENLEN+KK
Sbjct: 170 PYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKK 229
Query: 178 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA G
Sbjct: 230 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALG 269
Score = 91.5 bits (228), Expect = 4e-20
Identities = 60/76 (78%), Positives = 68/76 (89%)
Query: 6 PADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKP 65
A+REI AEDSI+VVCRFRPLN SEEKAGSKF+VKFP+ EEN +S+ GK YLFDKVFKP
Sbjct: 2 SAEREIPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLFDKVFKP 61
Query: 66 NATQEKVYDEAAKSIV 81
NA+QEKVY+EAAKSIV
Sbjct: 62 NASQEKVYNEAAKSIV 77
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 158 bits (401), Expect = 6e-43
Identities = 55/97 (56%), Positives = 69/97 (71%)
Query: 121 PGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSG 180
G E +V +EV+EV+ G R +A TNMN+ SSRSHS+F+I + Q+N+E SG
Sbjct: 170 KGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSG 229
Query: 181 KLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
+L+LVDLAGSEKV KTGA G L+EAK INKSLSA G
Sbjct: 230 QLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALG 266
Score = 76.1 bits (188), Expect = 5e-15
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 12 AAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEEN-GLSLGGKFYLFDKVFKPNATQE 70
++ +SI+VV RFRP N E ++G + IV F + FD+VF + Q
Sbjct: 3 SSANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQS 62
Query: 71 KVYDEAAKSIV 81
++D + K V
Sbjct: 63 DIFDFSIKPTV 73
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 157 bits (400), Expect = 1e-42
Identities = 42/95 (44%), Positives = 57/95 (60%)
Query: 121 PGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSG 180
T + EE+ +I+ G RH T MNE SSRSH + + ++ NL+ + G
Sbjct: 168 ENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARG 227
Query: 181 KLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
KL VDLAGSE+V K+G+ G L EA++INKSLSA
Sbjct: 228 KLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSA 262
Score = 74.6 bits (184), Expect = 2e-14
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGG--KFYLFDKVFKPNATQEKVY 73
IRV CR RPL E A + ++ L K +++D+VF NATQ+ V+
Sbjct: 6 KIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVF 65
Query: 74 DEAAKSIVSV 83
++ + S
Sbjct: 66 EDTKYLVQSA 75
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 156 bits (397), Expect = 5e-42
Identities = 39/95 (41%), Positives = 54/95 (56%)
Query: 121 PGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSG 180
T + E V ++++ R A T NEHSSRSHS+F+I++ N + G
Sbjct: 235 TNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYG 294
Query: 181 KLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
L LVDLAGSE+++ + G L E +NINKSLSA
Sbjct: 295 TLNLVDLAGSERINVSQVVGDRLRETQNINKSLSA 329
Score = 68.8 bits (169), Expect = 2e-12
Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 9/77 (11%)
Query: 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL---------GGKFYLFDKVFKPN 66
+IRV R RP + E + + I S+ + FDK+F
Sbjct: 60 NIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQ 119
Query: 67 ATQEKVYDEAAKSIVSV 83
T V+ E + + S
Sbjct: 120 DTNVDVFKEVGQLVQSS 136
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 155 bits (393), Expect = 7e-42
Identities = 44/97 (45%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
Query: 121 PGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQ--ENLENEKKL 178
G + + E+ F ++ EG+ NR IA MN++SSRSH +F I ++ L EK +
Sbjct: 196 KGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYI 255
Query: 179 SGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
+ K+ LVDLAGSE++ K+G+EG VL EA INKSLS
Sbjct: 256 TSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSF 292
Score = 60.8 bits (148), Expect = 5e-10
Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 9/88 (10%)
Query: 2 SNNAPADREIAAEDSIRVVCRFRPLNHSEEK----AGSKFIVKFPSGGEENGLSLGG--- 54
++ R + R +P + + K + + +
Sbjct: 10 HSSGLVPRGSGTRKKVHAFVRVKPTDDFAHEMIRYGDDKRSIDIHLKKDIRRGVVNNQQT 69
Query: 55 -KFYLFDKVFKPNATQEKVYDEAAKSIV 81
+ D V +A+Q+ VY+ AK +V
Sbjct: 70 DWSFKLDGVLH-DASQDLVYETVAKDVV 96
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 154 bits (392), Expect = 1e-41
Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 121 PGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSG 180
A V +EV ++ + NR +A T NE SSRSHSVF + + E+ +
Sbjct: 213 TNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQISGEHSSRGLQCGA 272
Query: 181 KLYLVDLAGSEKVSKTGAEGTV----LDEAKNINKSLSA 215
L LVDLAGSE++ A G L E + IN SLS
Sbjct: 273 PLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLST 311
Score = 65.8 bits (161), Expect = 1e-11
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 21/89 (23%)
Query: 16 SIRVVCRFRPLNHSEEKAGSKFIVKFP--------------SGGEENGLSLGG------- 54
+IRV CR RP+ E ++ S +E +L G
Sbjct: 23 NIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPR 82
Query: 55 KFYLFDKVFKPNATQEKVYDEAAKSIVSV 83
+ FD+VF P + Q++V++E A + S
Sbjct: 83 HDFSFDRVFPPGSGQDEVFEEIAMLVQSA 111
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 151 bits (385), Expect = 1e-40
Identities = 41/98 (41%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Query: 122 GATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLS-- 179
++ V ++ ++++ G R +A TNMNE SSRSH+VF I Q+ + E ++
Sbjct: 180 DLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE 239
Query: 180 --GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
K+ LVDLAGSE+ TGA+GT L E NINKSL+
Sbjct: 240 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTT 277
Score = 66.8 bits (164), Expect = 6e-12
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 12/81 (14%)
Query: 13 AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGG----EENGLSLGGKFYLFDKVFKPN-- 66
A S++V R RP N E SK I++ K + FD + +
Sbjct: 2 AGASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTS 61
Query: 67 ------ATQEKVYDEAAKSIV 81
A+Q++VY + + ++
Sbjct: 62 PEDINYASQKQVYRDIGEEML 82
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 149 bits (378), Expect = 1e-39
Identities = 43/97 (44%), Positives = 59/97 (60%), Gaps = 3/97 (3%)
Query: 122 GATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLS-- 179
+ +E+ V+ G NR + TNMNEHSSRSH++F+I ++ + + +
Sbjct: 191 DLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIR 250
Query: 180 -GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
GKL LVDLAGSE+ +KTGA+G L EA IN SLSA
Sbjct: 251 VGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSA 287
Score = 77.6 bits (192), Expect = 2e-15
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 2 SNNAPADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEE-------NGLSLGG 54
S+ + +S+RVV R RP+N E+ A +V +
Sbjct: 8 SSGRENLYFQGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMP 67
Query: 55 KFYLFDKVFKPNATQEKVYDEAAKSIV 81
K + FD V+ NA Q ++YDE + +V
Sbjct: 68 KTFTFDAVYDWNAKQFELYDETFRPLV 94
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 149 bits (378), Expect = 2e-39
Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQ-ENLENEK 176
I+ PG +++ + + NR + T +N+ SSRSH+V L+ V Q E L +
Sbjct: 184 ILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFR 243
Query: 177 KLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
+ GKLYL+DLAGSE +TG +G L E+ IN SL
Sbjct: 244 QREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFV 282
Score = 72.3 bits (178), Expect = 1e-13
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 4/84 (4%)
Query: 2 SNNAPADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGG----KFY 57
S+ +RV R RP A V+ + Y
Sbjct: 8 SSGRENLYFQGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKY 67
Query: 58 LFDKVFKPNATQEKVYDEAAKSIV 81
FD + +TQ+ +Y + + I+
Sbjct: 68 QFDAFYGERSTQQDIYAGSVQPIL 91
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 146 bits (372), Expect = 4e-39
Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 8/106 (7%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQ-------- 169
+V G E V +EV ++E G A RH T++N SSRSH+VF + ++Q
Sbjct: 173 VVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRL 232
Query: 170 ENLENEKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
+ L K + VDLAGSE+V KTG+ G L E+ IN SL A
Sbjct: 233 PRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLA 278
Score = 78.4 bits (194), Expect = 8e-16
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Query: 5 APADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFK 64
A E +RV R RPL E G + ++ G L + + F V
Sbjct: 1 GAMGLPGAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLG-RDRHFGFHVVLA 59
Query: 65 PNATQEKVYDEAAKSIV 81
+A QE VY + ++
Sbjct: 60 EDAGQEAVYQACVQPLL 76
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 146 bits (371), Expect = 8e-39
Identities = 42/101 (41%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLE---N 174
++ G E V +EV++++E+G A R A T MN +SSRSHSVF + + +
Sbjct: 185 VIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE 244
Query: 175 EKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
E GKL LVDLAGSE + ++GA EA NIN+SL
Sbjct: 245 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLT 285
Score = 74.5 bits (184), Expect = 2e-14
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 9 REIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGG-------KFYLFDK 61
++ +I+VV R RP N +E KA + IV+ +E + GG K Y FD
Sbjct: 2 KKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDM 61
Query: 62 VFKPNATQEKVYDEAAKSIV 81
VF + Q VY I+
Sbjct: 62 VFGASTKQIDVYRSVVCPIL 81
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 143 bits (362), Expect = 3e-37
Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 96 DRLRSDHQLKASTMCEHSLMHLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEH 155
D L ++ + M +++ + V TE V P + ++ K NR A T NE
Sbjct: 203 DLLSNEQKDMEIRMAKNNKNDIYV-SNITEETVLDPNHLRHLMHTAKMNRATASTAGNER 261
Query: 156 SSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
SSRSH+V + + + E ++ G + LVDLAGSE + T + E KNIN+SLS
Sbjct: 262 SSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSE 317
Score = 67.3 bits (165), Expect = 5e-12
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 15 DSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEE-------NGLSLGGKFYLFDKVFKPNA 67
D+IRV CR RP SEE E +G + + FD+VF P +
Sbjct: 59 DNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 118
Query: 68 TQEKVYDEAAKSIVSV 83
+Q +++ + I S
Sbjct: 119 SQSDIFEMVSPLIQSA 134
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 141 bits (359), Expect = 5e-37
Identities = 47/102 (46%), Positives = 62/102 (60%), Gaps = 4/102 (3%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINV--KQENLENE 175
++ G E V ++V++++E+GK R A T MN SSRSH+VF I V ++ +E E
Sbjct: 195 VIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGE 254
Query: 176 KKL-SGKLYLVDLAGSEKVSKTGAE-GTVLDEAKNINKSLSA 215
L GKL LVDLAGSE VSK G E G + E NIN+SL
Sbjct: 255 DMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLT 296
Score = 79.6 bits (197), Expect = 4e-16
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Query: 2 SNNAPADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEE----NGLSLGGKFY 57
N + + +I+V R RPLN E S +V E S K +
Sbjct: 10 GGNTSRQPQKKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKF 69
Query: 58 LFDKVFKPNATQEKVYDEAAKSIV 81
FD+ F P + Q VY ++
Sbjct: 70 TFDRSFGPESKQCDVYSVVVSPLI 93
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 141 bits (357), Expect = 5e-37
Identities = 45/100 (45%), Positives = 61/100 (61%), Gaps = 4/100 (4%)
Query: 122 GATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLS-- 179
G ++ V +++ ++ EG +R +A TNMNE SSRSH+VF I + + + S
Sbjct: 182 GLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGE 241
Query: 180 --GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
GKL LVDLAGSE+ +KTGA G L E NINKSL+ G
Sbjct: 242 KVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLG 281
Score = 59.5 bits (145), Expect = 1e-09
Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 18/84 (21%)
Query: 16 SIRVVCRFRPLNHSEEKAGSKFIVKF----------PSGGEENGLSLGGKFYLFDKVF-- 63
++V R RP+N E +K +V + + K + +D F
Sbjct: 2 KVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWS 61
Query: 64 ------KPNATQEKVYDEAAKSIV 81
+ A Q+ V+ ++I+
Sbjct: 62 MDESVKEKYAGQDIVFKCLGENIL 85
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Length = 360
Score = 137 bits (347), Expect = 1e-35
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKK 177
+V V EE+ + +G R I V + N+ SSRSH++ I++K N+
Sbjct: 171 VVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKD---INKNT 227
Query: 178 LSGKLYLVDLAGSEKVSKTGAEGT-VLDEAKNINKSLSA 215
GK+ +DLAGSE+ + T ++ + NIN+SL A
Sbjct: 228 SLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLA 266
Score = 70.0 bits (172), Expect = 5e-13
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 10/75 (13%)
Query: 17 IRVVCRFRPLNHSEEKAGSKFIVKFPSGGE----------ENGLSLGGKFYLFDKVFKPN 66
I+VV R RPL+ E+K I+ + + + ++ DKVF
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDT 61
Query: 67 ATQEKVYDEAAKSIV 81
VY+ K ++
Sbjct: 62 VDNFTVYENTIKPLI 76
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 135 bits (342), Expect = 3e-34
Identities = 41/98 (41%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 122 GATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLS-- 179
TE V EE+ + G +R +A T MN+ SSRSH+VF I +KQ + + E +
Sbjct: 231 DLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTE 290
Query: 180 --GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
++ LVDLAGSE+ T A G L E NINKSL+
Sbjct: 291 RSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTT 328
Score = 57.4 bits (139), Expect = 9e-09
Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 25/105 (23%)
Query: 2 SNNAPADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKF------------------PS 43
+ A + ++RVV R R E + ++ IV+ +
Sbjct: 25 DDTASSFVSKDPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADA 84
Query: 44 GGEENGLSLGGKFYLFDKVF-------KPNATQEKVYDEAAKSIV 81
G + L K + FDK F + ATQE VYD + +
Sbjct: 85 RGARSRRVLEEKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFL 129
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 128 bits (323), Expect = 2e-32
Identities = 42/108 (38%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 111 EHSLMHLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQE 170
E + ++V G T EE+ +++ G NR T+MN SSRSH+VF I ++Q+
Sbjct: 181 EDTQKGVVV-HGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQ 239
Query: 171 NLE---NEKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
+ N+ K+ L+DLAGSE+ S +GA+GT E NIN+SL A
Sbjct: 240 DKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLA 287
Score = 56.9 bits (138), Expect = 9e-09
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 22/89 (24%)
Query: 15 DSIRVVCRFRPLNHSEEKAGSKFIVKF---------PSGGEENGLSLGG----------- 54
++VV R RP N E+ AG +V P E +
Sbjct: 10 HHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQN 69
Query: 55 --KFYLFDKVFKPNATQEKVYDEAAKSIV 81
++FD VF +TQ +V++ K I+
Sbjct: 70 KDLKFVFDAVFDETSTQSEVFEHTTKPIL 98
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 121 bits (305), Expect = 8e-30
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKK 177
+ G E V ++V ++I+ G A R T N +SSRSH+ F I ++ + +
Sbjct: 223 VQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKG-----R 277
Query: 178 LSGKLYLVDLAGSEKVSKTGAEGTVL-DEAKNINKSLSA 215
+ GK LVDLAG+E+ + T + E INKSL A
Sbjct: 278 MHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLA 316
Score = 61.1 bits (149), Expect = 5e-10
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 10/91 (10%)
Query: 1 MSNNAPADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGE----------ENGL 50
+ + + E I V R RPLN E ++ PS +
Sbjct: 37 LECHPLTMTDPIEEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTK 96
Query: 51 SLGGKFYLFDKVFKPNATQEKVYDEAAKSIV 81
L + + FD F A+ E VY A+ +V
Sbjct: 97 YLENQAFCFDFAFDETASNEVVYRFTARPLV 127
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 120 bits (304), Expect = 1e-29
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKK 177
+ G E V ++V ++I G A R T N +SSRSH+ F I ++ + +
Sbjct: 243 VQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG-----R 297
Query: 178 LSGKLYLVDLAGSEKVSKTGAEGTVL-DEAKNINKSLSA 215
L GK LVDLAG+E+ + T + E INKSL A
Sbjct: 298 LHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLA 336
Score = 61.1 bits (149), Expect = 5e-10
Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 10/91 (10%)
Query: 1 MSNNAPADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGE----------ENGL 50
M + + E I V R RPLN E ++ PS +
Sbjct: 57 MECSPLTVTDPIEEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTK 116
Query: 51 SLGGKFYLFDKVFKPNATQEKVYDEAAKSIV 81
L + + FD F A+ E VY A+ +V
Sbjct: 117 YLENQAFCFDFAFDETASNEVVYRFTARPLV 147
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 79.9 bits (197), Expect = 1e-15
Identities = 63/379 (16%), Positives = 146/379 (38%), Gaps = 59/379 (15%)
Query: 271 RLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGG 330
L +T ER+++A +LK LE ++ L + L + LQA + AEE
Sbjct: 864 EELQRTKERQQKAEAELKELE----QKHTQLCEEKNLLQEKLQAETELYAEAEEMRV--- 916
Query: 331 SLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDY 390
K LE L ++ ++ + L+ E K+++++
Sbjct: 917 --RLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLD----------LEEQL 964
Query: 391 EQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 450
E+ + +L E +A ++K++ D ++ + +LT+E + +E V ++ L
Sbjct: 965 EEEEAARQKLQLEKVTADGKIKKM----EDDILIMEDQNNKLTKERKLLEERVSDLTTNL 1020
Query: 451 EELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEML 510
E ++K++ + + E++ EL ++ + EL++IK + ++E +
Sbjct: 1021 AEE----EEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQI 1076
Query: 511 TNLLKDLCEIGLVIGS-EGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDEQVN 569
L + E+ + E +++ +LE+E + + K++ E +
Sbjct: 1077 AELQAQIAELKAQLAKKEEELQAALA---RLEDETSQKNNALKKIR------ELESHISD 1127
Query: 570 LADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDE 629
L + ++ + E +++ L EE E L +L++ +
Sbjct: 1128 LQEDLESEKAARNKAEK----------------------QKRDLSEELEALKTELEDTLD 1165
Query: 630 EINQQSQYAEKLKEQIMEQ 648
Q + + ++
Sbjct: 1166 TTATQQELRGSDYKDDDDK 1184
Score = 76.8 bits (189), Expect = 1e-14
Identities = 46/302 (15%), Positives = 113/302 (37%), Gaps = 20/302 (6%)
Query: 220 KLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNER 279
+ +E A + +++ + L ++ E + E E+ RL + E
Sbjct: 868 RTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRV--RLAAKKQEL 925
Query: 280 REQARKDLKGLEDTVTKELQTLHNLRKLF---VQDLQARI---KKSVTAEESEDDGGSLA 333
E + +E+ + Q L +K + DL+ ++ + + + E +
Sbjct: 926 EEILHEMEARIEEE-EERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLE----KVT 980
Query: 334 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQL 393
KI +E+++ + + +L ++ L + L L E+ K +T + +E +
Sbjct: 981 ADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESM 1040
Query: 394 QGEM-------TRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEV 446
E+ + QE E K +++ + +LQ ++ L + +EE++
Sbjct: 1041 ISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAA 1100
Query: 447 LQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRI 506
L LE+ + +++ L E+L ++ N + + + + K +
Sbjct: 1101 LARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTEL 1160
Query: 507 NE 508
+
Sbjct: 1161 ED 1162
Score = 63.3 bits (154), Expect = 2e-10
Identities = 52/353 (14%), Positives = 129/353 (36%), Gaps = 42/353 (11%)
Query: 334 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQL 393
K++ E + + ++ EL +LE++ E L+ + +L
Sbjct: 848 PLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETEL 907
Query: 394 QGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEL 453
E + + K+E++E++ E+ + +L E + ++++ ++ + LEE
Sbjct: 908 YAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEE 967
Query: 454 AVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNL 513
+ E T + + + + +++ + + N + E +K + E +++L
Sbjct: 968 EAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKE-----------RKLLEERVSDL 1016
Query: 514 LKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDEQVN--LA 571
+L E E K + K E + + + K + E K ++ +
Sbjct: 1017 TTNLAE------EEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESS 1070
Query: 572 DPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEI 631
D + A + + K EEE + +L+++ +
Sbjct: 1071 DLHEQIAELQAQIAEL-------------------KAQLAKKEEELQAALARLEDETSQK 1111
Query: 632 NQQSQYAEKLKEQIME-QEEVSGLLVCGQTNERREQARKDLKGLEDTVTKELQ 683
N + +L+ I + QE++ + E+ ++DL + + EL+
Sbjct: 1112 NNALKKIRELESHISDLQEDLESE---KAARNKAEKQKRDLSEELEALKTELE 1161
Score = 61.8 bits (150), Expect = 7e-10
Identities = 43/271 (15%), Positives = 94/271 (34%), Gaps = 16/271 (5%)
Query: 220 KLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRL-LLQTNE 278
+LEE I + + + L A M+ + ++ E E + +L + +
Sbjct: 924 ELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADG 983
Query: 279 RREQARKDLKGLEDTV---TKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQR 335
+ ++ D+ +ED TKE + L +L +K+ + ++
Sbjct: 984 KIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN-----KHE 1038
Query: 336 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQG 395
IS LE L + K ++L + L E L +++ E I + + +
Sbjct: 1039 SMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQI---AELQAQIAELKAQLAKKEE 1095
Query: 396 EMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAV 455
E+ E + + + +L+ ++ L ++ ES K + + +L+
Sbjct: 1096 ELQAALARLEDETSQKNNAL----KKIRELESHISDLQEDLESEKAARNKAEKQKRDLSE 1151
Query: 456 NYDQKSQEVETKNKEFETLTEELTLKQTTLN 486
+ E+E T E +
Sbjct: 1152 ELEALKTELEDTLDTTATQQELRGSDYKDDD 1182
Score = 32.5 bits (74), Expect = 0.64
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 608 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIME-QEEVSGLLVCGQTNERREQ 666
RQKL+ E+ ++ + +++I KL ++ +E VS L E + +
Sbjct: 969 AARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028
Query: 667 ARKDLKG-LEDTVTKELQTLHNLRKL 691
LK E +++ L K
Sbjct: 1029 NLTKLKNKHESMISELEVRLKKEEKS 1054
Score = 30.2 bits (68), Expect = 2.9
Identities = 15/83 (18%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 608 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQA 667
E++K++++ L +QL+E++ + +I + E+ ++ N + +
Sbjct: 948 AEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIME--DQNNKLTKE 1005
Query: 668 RKDLKGLEDTVTKELQTLHNLRK 690
RK L+ +T L K
Sbjct: 1006 RKLLEERVSDLTTNLAEEEEKAK 1028
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.0 bits (165), Expect = 7e-12
Identities = 85/648 (13%), Positives = 183/648 (28%), Gaps = 210/648 (32%)
Query: 14 EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPNATQEKVY 73
+D + + EE I+ +G LF + + QE++
Sbjct: 39 QDMPKSILS------KEE---IDHIIMSKD--AVSGT-----LRLFWTLL---SKQEEMV 79
Query: 74 DEAAKSIVSVQF---------------VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLI 118
+ + ++ + + + Y+ DRL +D+Q
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ--------------- 124
Query: 119 VFPGATERFVGKPEEVFEV---IEEGKANRHIAVTNM---------NEHSSRSHS----- 161
VF + V + + ++ + E + +++ + + + S+
Sbjct: 125 VFA---KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD-VCLSYKVQCKM 180
Query: 162 ---VFLINVKQEN-----LENEKKLSGKL-----YLVDLAGSEKVSKTGAEGT------- 201
+F +N+K N LE +KL ++ D + + K+ +
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 202 --------VLD--------EAKNI---------NKSLSADGAGKLEEEFTVARLYISKMK 236
VL A N+ K ++ + ++ ++
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 237 SEVKNLVARCTSMESSQ-AEEHKK----AIEYEKELGETRLLLQTNERREQARK-DLKGL 290
EVK+L+ + E + + E + + + + L
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRL---SIIAE--SIRDGLATWDNWKHVNCDKL 355
Query: 291 EDTVTKELQTL--HNLRKLFVQDL-----QARIKKSV-----TAEESEDDGGSLAQRQKI 338
+ L L RK+F L A I + D + + K
Sbjct: 356 TTIIESSLNVLEPAEYRKMF-DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 339 SFLENNLDQLT-KVHKQLVRDNADLRCELPKLEKRLRATMERVKLIT--TARRDYEQLQG 395
S +E + T + + EL K++ + R ++ + ++
Sbjct: 415 SLVEKQPKESTISIP--------SIYLEL-KVKLENEYALHR-SIVDHYNIPKTFDS--D 462
Query: 396 EMTRLTQENES--------AKEEVKELITTARR---DYEQLQGEMTRLTQENESAKEEVK 444
++ + E E +T R D+ L+ ++ R +A +
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI-RHDSTAWNASGSIL 521
Query: 445 EVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKK 504
LQ L+ Y K + I D ++
Sbjct: 522 NTLQQLK----FY-----------KPY-----------------------ICDNDPKYER 543
Query: 505 RINEMLTNLLKDLCEIGLVIGSEGDM---KVTSDGAGKLEEEFT-VAR 548
+N +L L K E L+ D+ + ++ EE V R
Sbjct: 544 LVNAILDFLPK--IEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 64.9 bits (157), Expect = 7e-11
Identities = 67/562 (11%), Positives = 161/562 (28%), Gaps = 178/562 (31%)
Query: 202 VLDEAKNINKSLSADGAGKLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAI 261
V D K+I EE +I K V + ++ S Q E +K +
Sbjct: 38 VQDMPKSILSK----------EEID----HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 262 EYEKELGETRLLLQTN-----ERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARI 316
E +L+ N + ++ + ++ L+N D Q
Sbjct: 84 EE---------VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-------DNQVFA 127
Query: 317 KKSVTAEESEDDGGSLAQRQKISFLENNLDQLTK-----VH------KQ-LVRD---NAD 361
K +V+ + L L +L + K + D +
Sbjct: 128 KYNVSRLQ------------PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 362 LRCELP--------KLEKRLRATMERV-KLITTARRDYEQLQGEMTRLTQENESAKEEVK 412
++C++ K +E + KL+ ++ + + S + E++
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 413 ELITTARRDYEQ----LQGEMTRLTQENESAKEEV--KEVLQALEELAVNYDQKSQE-VE 465
L+ + YE L V + A ++ + +
Sbjct: 236 RLL--KSKPYENCLLVL---------------LNVQNAKAWNA-------FNLSCKILLT 271
Query: 466 TKNKEF-----ETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEI 520
T+ K+ T ++L ++ T E++ + K ++ +L +++
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL------LLKYLDCRPQDLPREVLTT 325
Query: 521 G-LVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWR--NGETVKE--DEQVNLADPVD 575
+ + DG + W+ N + + + +N+ +P +
Sbjct: 326 NPRRLSIIAESI--RDGLATWDN-------------WKHVNCDKLTTIIESSLNVLEPAE 370
Query: 576 MAA---SIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEIN 632
++ P SA IP L ++ + + D
Sbjct: 371 YRKMFDRLSVFPPSAH------IPTILL-----------------SLIWFDVIKSDV--- 404
Query: 633 QQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQARKDLKGLEDTVTKELQTLHNLRKLF 692
++ + L+ ++ +++ + + + +L+ + L +
Sbjct: 405 ----------MVVVNKLHKYSLV-----EKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 693 VQDQVTSSQRWPMATKPTSRTD 714
V D + + D
Sbjct: 450 V-DHYNIPKTFDSDDLIPPYLD 470
Score = 44.5 bits (104), Expect = 1e-04
Identities = 36/235 (15%), Positives = 73/235 (31%), Gaps = 65/235 (27%)
Query: 494 QIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISK 553
+ + K ++ + + D K D + + +SK
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNF-----------DCKDVQD----------MPKSILSK 48
Query: 554 MKWRNGETVKE-DEQVNLADPVDMAASIAPTPESAPASILPAIPGSGL------MLGSLS 606
+E D + D V + T S ++ L ++ +
Sbjct: 49 ---------EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99
Query: 607 NEERQK------LEEERERLYQ--QLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLV-- 656
E+RQ E+R+RLY Q+ K +++ Y KL++ ++E +L+
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN-VSRLQPY-LKLRQALLELRPAKNVLIDG 157
Query: 657 ---CGQT-------NERREQARKDLK------GLEDTVTKELQTLHNLRKLFVQD 695
G+T + Q + D K ++ L+ L L +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 65.1 bits (159), Expect = 5e-11
Identities = 46/273 (16%), Positives = 102/273 (37%), Gaps = 33/273 (12%)
Query: 220 KLEEEFTVARLYISKMKSEVKNLVARCTSME------SSQAEEHKKAIEYEKELGETR-- 271
+ + + R +++ ++ + R S ++H + T
Sbjct: 830 VVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKA 889
Query: 272 -LLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGG 330
+ LQ RR A+++LK L+ E +++ +KL L+ +I +
Sbjct: 890 IVYLQCCYRRMMAKRELKKLKI----EARSVERYKKL-HIGLENKIMQ------------ 932
Query: 331 SLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDY 390
++KI L + L + +L +RLR + E K A
Sbjct: 933 ---LQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAK---NATNRV 986
Query: 391 EQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 450
LQ E+ +L +E + E K + A + + + ++ L ++N K E +E+ + +
Sbjct: 987 LSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRI 1046
Query: 451 EELA-VNYDQKSQEVETKNKEFETLTEELTLKQ 482
+ A + +++ + K+ E + L+
Sbjct: 1047 HDQAKEITETMEKKLVEETKQLELDLNDERLRY 1079
Score = 64.4 bits (157), Expect = 1e-10
Identities = 47/252 (18%), Positives = 96/252 (38%), Gaps = 20/252 (7%)
Query: 272 LLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGS 331
+++Q +R RK + + D L + R KS+ ++ G
Sbjct: 820 IIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVR--GW 877
Query: 332 LAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYE 391
LA+ L+ + + + + + K+L+ V+ E
Sbjct: 878 LARVHYHRTLKAIVYLQCCYRRMMAK----------RELKKLKIEARSVERYKKLHIGLE 927
Query: 392 ----QLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVL 447
QLQ ++ +E +S E++ L T + E+L+ ++ RL E AK VL
Sbjct: 928 NKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVL 987
Query: 448 QALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRIN 507
EE+A + +E+ E +T+ E + +EL++ + +K+ +N
Sbjct: 988 SLQEEIA----KLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043
Query: 508 EMLTNLLKDLCE 519
+ + K++ E
Sbjct: 1044 RRIHDQAKEITE 1055
Score = 36.6 bits (85), Expect = 0.036
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Query: 608 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQA 667
E + EEE + ++ EEI + + + + + EE + EQ
Sbjct: 970 ERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEE-----WADKYKHETEQL 1024
Query: 668 RKDLKGLEDTVTKELQTLHN 687
+LK + E + L+
Sbjct: 1025 VSELKEQNTLLKTEKEELNR 1044
Score = 35.1 bits (81), Expect = 0.090
Identities = 36/288 (12%), Positives = 83/288 (28%), Gaps = 53/288 (18%)
Query: 418 ARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEE 477
R+ Y+ ++ L Q + L E QK + +
Sbjct: 831 VRKRYQCMRDATIAL-QALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKA 889
Query: 478 LTLKQTTLNTTSTELQQIK----DMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVT 533
+ Q + + K S + K+++ L N + L
Sbjct: 890 IVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQR-------------- 935
Query: 534 SDGAGKLEEEFTVARLYISKMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILP 593
K++E+ + + KM N E E L V+ ++A
Sbjct: 936 -----KIDEQNKEYKSLLEKMN--NLEITYSTETEKLRSDVERLRMSEEEAKNA------ 982
Query: 594 AIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSG 653
L+EE +L ++L + E ++A+K K + +
Sbjct: 983 -------------TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVS--- 1026
Query: 654 LLVCGQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDQVTSSQ 701
+ E+ + + + L + + + + + + ++ +
Sbjct: 1027 -----ELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLE 1069
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 4e-08
Identities = 56/309 (18%), Positives = 100/309 (32%), Gaps = 79/309 (25%)
Query: 424 QLQGEMTR-LTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKN-KEFETLTEELTLK 481
Q QG M L + +++A++ A Y ++ N K
Sbjct: 1627 QEQG-MGMDLYKTSKAAQDVWNR---ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 482 QTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLC-EIGLVIGSEGDMKVTSDGAGKL 540
+ N ++ + I D + ++I + + +G + T
Sbjct: 1683 RIRENYSAMIFETIVD-GKLKTEKIFKEINEHSTSYTFR-----SEKGLLSAT------- 1729
Query: 541 EEEFT-VARLYISKMKWRNGETVKEDEQVNLADPVDMAA--SIAPTPE-SAPASILPAIP 596
+FT A + K + E +K L A S+ E +A AS+ A
Sbjct: 1730 --QFTQPALTLMEKAAF---EDLKSK---GLIPADATFAGHSLG---EYAALASL--A-- 1774
Query: 597 GSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYA---------------EKL 641
+S E ++ R Q +DE +S Y E L
Sbjct: 1775 ------DVMSIESLVEVVFYRGMTMQVAVPRDE--LGRSNYGMIAINPGRVAASFSQEAL 1826
Query: 642 KEQIMEQEEVSGLLVCGQT---NERREQ---ARKDLKGLEDTVTKELQTLH----NLRKL 691
+ + + +G LV + N +Q A DL+ L DTVT L + ++ +L
Sbjct: 1827 QYVVERVGKRTGWLV--EIVNYNVENQQYVAA-GDLRAL-DTVTNVLNFIKLQKIDIIEL 1882
Query: 692 FVQ---DQV 697
++V
Sbjct: 1883 QKSLSLEEV 1891
Score = 53.5 bits (128), Expect = 2e-07
Identities = 66/495 (13%), Positives = 136/495 (27%), Gaps = 200/495 (40%)
Query: 304 LRKLFVQDLQARIKKSVTAEESEDDGGS----LAQRQKISFLENNLDQLTKVHKQLVRDN 359
L++ F + L T + DD + L + + ++ + ++
Sbjct: 33 LQEQFNKILPE-----PTEGFAADDEPTTPAELVGKF-LGYVSSLVEP----------SK 76
Query: 360 ADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGE-----MTRLTQENESAKEEVKEL 414
++ L +T Y L+G +L QEN++ + KEL
Sbjct: 77 VGQFDQVLNL------------CLTEFENCY--LEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 415 ITTARRDYEQLQGEMTR-LTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFET 473
I ++Y + R +++ SA + +A V N +
Sbjct: 123 I----KNYITARIMAKRPFDKKSNSA------LFRA--------------VGEGNAQLVA 158
Query: 474 L-----TEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEG 528
+ + + EL+ + + + + L +L
Sbjct: 159 IFGGQGNTDDYFE---------ELRDLYQTYHVLVGDLIKFSAETLSEL----------- 198
Query: 529 DMKVTSDGAGKLEEEFTVARLY---ISKMKWRNGETVKEDEQVNLADPVDMAASIAPTPE 585
+ +++ ++ ++W L +P + P +
Sbjct: 199 -----------IRTTLDAEKVFTQGLNILEW-------------LENPSN-----TPDKD 229
Query: 586 ---SAPASILPAIPGSGL-----------MLGSLSNEERQKLE----------------- 614
S P S P I G+ +LG E R L+
Sbjct: 230 YLLSIPIS-CPLI---GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 615 -EERERLYQQLDEKDE---EINQQSQYA---EKLKEQIMEQEEVSG-------LLVCG-- 658
+ E + + + I + A L I+E + L +
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 659 ---------QTNERREQARKDLKGLEDT-----VT---KELQTLH-NLRKLFV-----QD 695
+TN ++ L + V+ + L L+ LRK Q
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 696 QVTSSQRWPMATKPT 710
++ S+R K
Sbjct: 406 RIPFSER-----KLK 415
Score = 51.2 bits (122), Expect = 1e-06
Identities = 92/574 (16%), Positives = 167/574 (29%), Gaps = 161/574 (28%)
Query: 137 VIEEGKANRHIAV-TNMNEHSSRSHSVFLINVKQ--ENLENEKKLSGKLYLVD-----LA 188
+ G + V T +S+ F + + E + + + LV ++
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVS 69
Query: 189 GSEKVSKTGAEGTVLDEA-----------KNIN---KSLSADGAGKLEEEFTVARLYISK 234
+ SK G VL+ +I+ L + L + + + YI+
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITA 129
Query: 235 MKSEVKNLVARCTS--MESSQAEEHKK-AI--------EYEKELGETRLLLQTNERREQA 283
+ + S + + AI +Y +EL R L QT
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL---RDLYQT------Y 180
Query: 284 RKDLKGLEDTVTKELQTL----HNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKIS 339
+ L + L L + K+F Q L I + + + D L IS
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN--ILEWLENPSNTPDKDYLLSIP-IS 237
Query: 340 FLENNLDQLTKVHKQLVRDNADLRCELP-KLEKRLRATMERVKLITTAR--------RDY 390
+ QL H + P +L L+ + + TA +
Sbjct: 238 CPLIGVIQL--AHYVVTAKLLGFT---PGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 391 EQLQGEMTRL-------TQENESAKEEVKELITTARRDYEQLQGE-----M---TRLTQE 435
+ + E L + D + E M + LTQE
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYP----NTSLPPSILEDSLE-NNEGVPSPMLSISNLTQE 347
Query: 436 NESAKEEVKEVLQALEELAVNYDQKSQ-EVETKN--KEFETLT---EELTLKQTTLNTTS 489
+V + + + Q E+ N K ++ + L LN
Sbjct: 348 ---------QVQDYVNKTNSHLPAGKQVEISLVNGAKNL-VVSGPPQSLY----GLNL-- 391
Query: 490 TELQQIKDMSNHQKKRI----------NEML-------TNLLK--------DLCEIGLVI 524
L++ K S + RI N L ++LL DL + +
Sbjct: 392 -TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 525 GSEGDMKV----TSDGAGKLEEEFTVARLYISKMKWRN-GETVKED--EQVNLADPVDMA 577
++ D+++ T DG+ R ++ E + + + PV
Sbjct: 451 NAK-DIQIPVYDTFDGSD-----------------LRVLSGSISERIVDCI-IRLPVKWE 491
Query: 578 ASIAPTPESAPASILPAIPGSGLMLGSLSNEERQ 611
T + IL PG LG L++ +
Sbjct: 492 T----TTQFKATHILDFGPGGASGLGVLTHRNKD 521
Score = 50.4 bits (120), Expect = 2e-06
Identities = 53/304 (17%), Positives = 97/304 (31%), Gaps = 95/304 (31%)
Query: 3 NNAPADREI--AAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGE------ENGLSLGG 54
+ A +++ A++ + F L+ + + F GGE EN ++
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNL-TIHF--GGEKGKRIRENYSAM-- 1691
Query: 55 KFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVDAD------QY------MVSV---DRLR 99
+F+ + EK++ E + S F Q+ ++ + L+
Sbjct: 1692 ---IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLK 1748
Query: 100 SDHQLKA-STMCEHSL------------MHL-----IVFPGATERFVGK-PEEVFEVIEE 140
S + A +T HSL M + +VF R G + E
Sbjct: 1749 SKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVF----YR--GMTMQVAVPRDEL 1802
Query: 141 GKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKTGAEG 200
G++N + N + QE L+ Y+V+ G G
Sbjct: 1803 GRSNYGMIAINPGR--------VAASFSQEALQ---------YVVERVGKRT-------G 1838
Query: 201 TVLDEAKNINKSLSADG-----AGKLE--EEFTVARLYISKMKSEVKNLVARCTSMESSQ 253
++ E N N + AG L + T +I K ++ L S+ +
Sbjct: 1839 WLV-EIVNYN----VENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQK---SLSLEE 1890
Query: 254 AEEH 257
E H
Sbjct: 1891 VEGH 1894
Score = 40.8 bits (95), Expect = 0.002
Identities = 31/201 (15%), Positives = 62/201 (30%), Gaps = 61/201 (30%)
Query: 538 GKLEEEFTV-ARLYISKMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIP 596
G LE V + ++E L +P + A+ + P +
Sbjct: 14 GSLEHVLLVPTASFF------IASQLQEQFNKILPEPTEGFAA-----DDEPTTPA---- 58
Query: 597 GSGLM---LGSLSNEERQK------------LEE-ERERLYQ--------QLDEKDEEIN 632
L+ LG +S+ L E E L +L ++++
Sbjct: 59 --ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 633 QQSQ-----Y--AEKLKEQIMEQEEVSGLLVCGQTNERRE------QARKDLKGLEDTVT 679
+++ Y A + ++ +++ S L + Q G D
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ------GNTDDYF 170
Query: 680 KELQTLHNLRKLFVQDQVTSS 700
+EL+ L+ + V D + S
Sbjct: 171 EELRDLYQTYHVLVGDLIKFS 191
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 45.2 bits (105), Expect = 6e-05
Identities = 28/208 (13%), Positives = 66/208 (31%), Gaps = 11/208 (5%)
Query: 250 ESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFV 309
E ++ E+ Y ++L E + + ++ E + + L
Sbjct: 47 ERARIEK-----AYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVK 101
Query: 310 QDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKL 369
L + + + E + K + D K K + ++
Sbjct: 102 ASLMNDDFEKIKNWQKEAFHKQMMGGFKE--TKEAEDGFRKAQKPWAKKLKEVEAAKKAH 159
Query: 370 EKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEM 429
+ + ++ D ++ +L + E K++V + + YE+ E+
Sbjct: 160 HAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLK----TKEKYEKSLKEL 215
Query: 430 TRLTQENESAKEEVKEVLQALEELAVNY 457
+ T + E+V E Q EE + +
Sbjct: 216 DQGTPQYMENMEQVFEQCQQFEEKRLRF 243
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 43.1 bits (102), Expect = 3e-04
Identities = 28/228 (12%), Positives = 68/228 (29%), Gaps = 29/228 (12%)
Query: 258 KKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIK 317
K+A ++ G++ +Q+ + K + +E+ L + L+ +
Sbjct: 785 KQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKG--QEVSELEAIYNSLQTKLRLIKR 842
Query: 318 KSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATM 377
+ A + + E + ++ + + A L + ++ K+L
Sbjct: 843 EPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLEN-W 901
Query: 378 ERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENE 437
K + + + + E+ E + L + D + ++T L
Sbjct: 902 ATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGV 961
Query: 438 SAKEEVK--------------------------EVLQALEELAVNYDQ 459
E K E LQ +E+L ++
Sbjct: 962 PELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHHH 1009
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 40.7 bits (94), Expect = 4e-04
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 15/45 (33%)
Query: 334 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATME 378
++Q + L+ +L K++ D+A P L ++ATME
Sbjct: 18 EKQALKKLQASL----KLYAD---DSA------PALA--IKATME 47
Score = 34.9 bits (79), Expect = 0.031
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 9/36 (25%)
Query: 564 EDEQVNLADPVDMAASIAP-TPESAPASILPAIPGS 598
E + + + AS+ +SAPA L AI +
Sbjct: 18 EKQALK-----KLQASLKLYADDSAPA--L-AIKAT 45
Score = 31.5 bits (70), Expect = 0.50
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 6/31 (19%)
Query: 168 KQENLENEKKLSG--KLYLVDLAGSEKVSKT 196
KQ L KKL KLY D A + + T
Sbjct: 19 KQA-L---KKLQASLKLYADDSAPALAIKAT 45
Score = 31.1 bits (69), Expect = 0.58
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 18/44 (40%)
Query: 668 RKDLKGLEDTVTKELQTLHNLRKLFVQDQVTSSQRWP-MATKPT 710
++ LK L+ ++ KL+ D S+ P +A K T
Sbjct: 19 KQALKKLQASL-----------KLYADD---SA---PALAIKAT 45
Score = 28.8 bits (63), Expect = 4.2
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 17/40 (42%)
Query: 284 RKDLKGLEDTVTKELQTLHNLRKLFVQD------LQARIK 317
++ LK L+ ++ KL+ D ++A ++
Sbjct: 19 KQALKKLQASL-----------KLYADDSAPALAIKATME 47
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 41.1 bits (95), Expect = 0.001
Identities = 26/257 (10%), Positives = 80/257 (31%), Gaps = 18/257 (7%)
Query: 232 ISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLE 291
+ ++ + ++ + + + + E +NE + R +
Sbjct: 446 LPELLQRNREILDESLRLLDEEEATDN---DLRAKFKERWQRTPSNELYKPLRAEGTNFR 502
Query: 292 DTVTKELQTLHNLRKLF-------------VQDLQARIKKSVTAEESEDDGGSLAQRQKI 338
+ K +Q +++ + +L A I + A+ + + +
Sbjct: 503 TVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLL 562
Query: 339 SFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMT 398
S L+ + + L N D+ + + E +T R Y L ++
Sbjct: 563 SNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQ 622
Query: 399 RLTQENESAKEEVKELIT--TARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVN 456
++ E + ++ + + + + +A + E++ L+E
Sbjct: 623 ESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKF 682
Query: 457 YDQKSQEVETKNKEFET 473
Y++ ++ + +
Sbjct: 683 YNELTEILVRFQNKCSD 699
Score = 37.6 bits (86), Expect = 0.015
Identities = 35/293 (11%), Positives = 89/293 (30%), Gaps = 25/293 (8%)
Query: 222 EEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNERRE 281
+ + + I++M+ S+ A E + + + +
Sbjct: 378 QRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQ 437
Query: 282 QARKDLKGLEDTVTKELQTLHNLRKLFV------QDLQARIKKSVTAEESEDDGGSLAQR 335
+ +K L + + + + L +L DL+A+ K+ S + L R
Sbjct: 438 TVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPL--R 495
Query: 336 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQG 395
+ + LD+ + Q+ R + L K +L
Sbjct: 496 AEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCK-----------------PEPELNA 538
Query: 396 EMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAV 455
+ EV ++ + + ++++ E L + +S ++
Sbjct: 539 AIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDG 598
Query: 456 NYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINE 508
++++ V ++ + LT ++ +Q + K+ NE
Sbjct: 599 VINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNE 651
Score = 31.1 bits (69), Expect = 1.4
Identities = 59/442 (13%), Positives = 126/442 (28%), Gaps = 29/442 (6%)
Query: 251 SSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQ 310
S A++ E L L++T R ++K D + + L
Sbjct: 267 SILAKQQYYFGEEIARLQHAAELIKTVASRYDEYVNVKDFSDKINRALAAAKKDNDFIYH 326
Query: 311 DLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLE 370
D +K ++ + + +++ V Q + R L
Sbjct: 327 DRVPDLKDLDPIGKATLVKSTPVNVPISQKFTDLFEKMVPVSVQQSLAAYNQRKA--DLV 384
Query: 371 KRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMT 430
R A M + L + ++ + K + + + +
Sbjct: 385 NRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIK 444
Query: 431 RLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETK--NKEFETLTEELTLKQTTLNTT 488
L + + +E + E L+ L+E + + + + L + L + T T
Sbjct: 445 ELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTV 504
Query: 489 STELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVAR 548
+ Q + + + L K E+ I S K + ++
Sbjct: 505 LDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSN 564
Query: 549 LYISKMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNE 608
L + VK++ + D + + +A L + NE
Sbjct: 565 L----------DEVKKEREGLENDLKSVNFDMTSKFLTA------------LAQDGVINE 602
Query: 609 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQAR 668
E + E + E + +Q + ++ +E S + RE+
Sbjct: 603 EALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVS---HQEFSKMKQSNNEANLREEVL 659
Query: 669 KDLKGLEDTVTKELQTLHNLRK 690
K+L D + + L K
Sbjct: 660 KNLATAYDNFVELVANLKEGTK 681
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 41.2 bits (97), Expect = 0.001
Identities = 26/181 (14%), Positives = 52/181 (28%), Gaps = 16/181 (8%)
Query: 273 LLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSL 332
L++ A ++ T L+ ++ R KK + + L
Sbjct: 831 LIKREPFVAPAGLTPNEIDSTW-SALEKAEQEHAEALRIELKRQKKIAVLLQKYNRI--L 887
Query: 333 AQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQ 392
+ + + + ++ +L LE E L + D
Sbjct: 888 KKLEN----WATTKSVYLGSNETGDSITAVQAKLKNLEAFDG---ECQSLEGQSNSDLLS 940
Query: 393 LQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 452
+ ++T L E K+ +Q G + + E E LQ +E+
Sbjct: 941 ILAQLTELNYNGVPELTERKDTFFA-----QQWTGVKSSAETYKNTLLAE-LERLQKIED 994
Query: 453 L 453
L
Sbjct: 995 L 995
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane
protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Length = 602
Score = 40.1 bits (92), Expect = 0.003
Identities = 36/324 (11%), Positives = 98/324 (30%)
Query: 221 LEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNERR 280
+A ++ +E + L A S+ S E + EK + + +
Sbjct: 122 YGFRTEIAGYDALRLHTESRMLFADADSLRISPREARSLIEQAEKRQKDAQNADKKAADM 181
Query: 281 EQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISF 340
+ KG+ DT EL+ + QAR+ T +
Sbjct: 182 LAEYERRKGILDTRLSELEKNGGAALAVLDAQQARLLGQQTRNDRAISEARNKLSSVTES 241
Query: 341 LENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRL 400
L + LT+ +QL + + ++ I + ++T
Sbjct: 242 LNTARNALTRAEQQLTQQKNTPDGKTIVSPEKFPGRSSTNDSIVVSGDPRFAGTIKITTS 301
Query: 401 TQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQK 460
+ A + L +T++ E K+ + ++L
Sbjct: 302 AVIDNRANLNYLLSHSGLDYKRNILNDRNPVVTEDVEGDKKIYNAEVAEWDKLRQRLLDA 361
Query: 461 SQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEI 520
++ + + L+ + + L + + + +++ + + ++ +
Sbjct: 362 RNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRKQ 421
Query: 521 GLVIGSEGDMKVTSDGAGKLEEEF 544
+ ++ + T++ + E++
Sbjct: 422 DELKATKDAINFTTEFLKSVSEKY 445
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 39.5 bits (90), Expect = 0.003
Identities = 20/132 (15%), Positives = 39/132 (29%)
Query: 381 KLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAK 440
K A+ YE + +K+ A+ DYE + + +
Sbjct: 23 KANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDL 82
Query: 441 EEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSN 500
+ L+A E+ + E+E E LTE + L D
Sbjct: 83 ADYPVKLKAYEDEQTSIKAALAELEKHKNEDGNLTEPSAQNLVYDLEPNANLSLTTDGKF 142
Query: 501 HQKKRINEMLTN 512
+ +++ +
Sbjct: 143 LKASAVDDAFSK 154
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 38.2 bits (88), Expect = 0.004
Identities = 12/76 (15%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 607 NEERQKLEEERERLYQQLDEKDEEIN-QQSQYAEKLKEQIMEQEEVSGLLVCGQTNERRE 665
+E + + + RE ++L E D + ++ EK K+ + E + + +E+ E
Sbjct: 81 TQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQ--------RQSEQVE 132
Query: 666 QARKDLKGLEDTVTKE 681
+ + + + + ++
Sbjct: 133 KNKINNRIADKAFYQQ 148
Score = 37.1 bits (85), Expect = 0.010
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 20/91 (21%)
Query: 395 GEMTRLTQENESAK---EEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE 451
+ RLTQE ES + EE ++ + D ++ ++E +E +A +
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRL--QELD------------AASKVMEQEWRE--KAKK 118
Query: 452 ELAVNYDQKSQEVETKNKEFETLTEELTLKQ 482
+L ++S++VE KNK + ++ +Q
Sbjct: 119 DLEEWNQRQSEQVE-KNKINNRIADKAFYQQ 148
Score = 33.6 bits (76), Expect = 0.12
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 623 QLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQARKDL----KGLEDTV 678
Q D +E ++ E+ ++++ E + S E RE+A+KDL + + V
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASK----VMEQEWREKAKKDLEEWNQRQSEQV 131
Query: 679 TKELQTLHNLRKLFVQDQ 696
K K F Q
Sbjct: 132 EKNKINNRIADKAFYQQP 149
Score = 30.1 bits (67), Expect = 1.9
Identities = 8/59 (13%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 391 EQLQGEMTRLTQENESAKEEVKELITTARRD----YEQLQGEMTRLTQENESAKEEVKE 445
E+ + + L ++ ++E +E A++D ++ ++ + N A + +
Sbjct: 92 EEQRKRLQELDAASKVMEQEWRE---KAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQ 147
Score = 29.7 bits (66), Expect = 2.1
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 254 AEEHKKAIEYEKELGETRLLLQTNERREQARKDL----KGLEDTVTKELQTLHNLRKLFV 309
EE +K ++ E + E RE+A+KDL + + V K K F
Sbjct: 91 REEQRKRLQ-ELDAASKV---MEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFY 146
Query: 310 QDLQARI 316
Q A I
Sbjct: 147 QQPDADI 153
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC
domain, vesicle trafficking, membrane curvature,
endocytosis, exocytosis, F-BAR domain; 2.30A {Homo
sapiens}
Length = 276
Score = 37.8 bits (87), Expect = 0.008
Identities = 18/114 (15%), Positives = 44/114 (38%), Gaps = 2/114 (1%)
Query: 341 LENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRL 400
L+ + ++ K ++ V+ + + E+ + ++ + + ++ +Y E RL
Sbjct: 96 LQELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQERL 155
Query: 401 TQENESAKEEVKEL--ITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 452
+E + +E K A Y+ + + E E + Q +EE
Sbjct: 156 KKEGATQREIEKAAVKSKKATDTYKLYVEKYALAKADFEQKMTETAQKFQDIEE 209
Score = 32.0 bits (72), Expect = 0.54
Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 7/152 (4%)
Query: 365 ELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQ 424
+ KL K + T ++ + +L + +++ELI ++ E+
Sbjct: 54 SMTKLAKSASNYSQL----GTFAPVWDVFKTSTEKLANCHLDLVRKLQELIKEVQKYGEE 109
Query: 425 LQGEMTRLTQENESAKEEVKEV---LQALEELAVNYDQKSQEVETKNKEFETLTEELTLK 481
+ +E E V+ + QAL++ NY+ K E E KE T E
Sbjct: 110 QVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQERLKKEGATQREIEKAA 169
Query: 482 QTTLNTTSTELQQIKDMSNHQKKRINEMLTNL 513
+ T T ++ + + +M
Sbjct: 170 VKSKKATDTYKLYVEKYALAKADFEQKMTETA 201
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 36.0 bits (82), Expect = 0.054
Identities = 30/248 (12%), Positives = 75/248 (30%), Gaps = 19/248 (7%)
Query: 220 KLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNER 279
+++ + + + ++ + E E + T
Sbjct: 482 TIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIE-----EIQGLTTAHEQFKATLPD 536
Query: 280 REQARKDLKGLEDTVTKELQTLHNLRK--------------LFVQDLQARIKKSVTAEES 325
++ R+ + G+ + V+K +QT H + ++ + + A
Sbjct: 537 ADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALME 596
Query: 326 EDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITT 385
E +R + F + ++ LE +L + K I
Sbjct: 597 EHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVN 656
Query: 386 ARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKE 445
+ +QL+G+ ++ + + + R +EQL + R E E+
Sbjct: 657 YKPKIDQLEGDHQQIQEALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEVENQILTRDA 716
Query: 446 VLQALEEL 453
+ E++
Sbjct: 717 KGISQEQM 724
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein,
developmental protein, structural protei
phosphorylation, transport, microtubule; 2.10A {Homo
sapiens}
Length = 111
Score = 33.4 bits (76), Expect = 0.062
Identities = 18/96 (18%), Positives = 39/96 (40%)
Query: 390 YEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQA 449
LQ + RL E E+ KE+++ + + L+ ++++ E + V+E+ QA
Sbjct: 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQA 64
Query: 450 LEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTL 485
++L +E + E ++ L
Sbjct: 65 NDDLERAKRATIVSLEDFEQRLNQAIERNAFLESEL 100
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 34.3 bits (79), Expect = 0.15
Identities = 24/140 (17%), Positives = 49/140 (35%), Gaps = 17/140 (12%)
Query: 330 GSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRD 389
G + S N + L K K + D+ + L E V +++
Sbjct: 123 GKTVSYKDYSIFLENENILIK-AKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKE 181
Query: 390 YEQLQGEMTRLTQEN-------ESAKEEVKELITTARR---------DYEQLQGEMTRLT 433
YE+L+ ++ +L++ E+K + Y++ +G +
Sbjct: 182 YEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVIN 241
Query: 434 QENESAKEEVKEVLQALEEL 453
E E K E K++L ++
Sbjct: 242 NETEQLKAEEKKILNQFLKI 261
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 33.9 bits (77), Expect = 0.17
Identities = 20/90 (22%), Positives = 36/90 (40%)
Query: 606 SNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERRE 665
+ E +L EE R Q+L K I ++ + +EQ QE+ S + E E
Sbjct: 30 KSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKCSKEYLERFRREGNE 89
Query: 666 QARKDLKGLEDTVTKELQTLHNLRKLFVQD 695
+ + + + + + +H R QD
Sbjct: 90 KEMQRILLNSERLKSRIAEIHESRTKLEQD 119
Score = 30.4 bits (68), Expect = 1.8
Identities = 24/147 (16%), Positives = 57/147 (38%), Gaps = 2/147 (1%)
Query: 369 LEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGE 428
+E + R+Y+QL E TR +QE + + ++ T + EQ Q +
Sbjct: 13 VEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQ 72
Query: 429 MTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTT 488
+ E + E E + ++ + +N ++ + ++ L ++L + +
Sbjct: 73 EKCSKEYLERFRREGNE--KEMQRILLNSERLKSRIAEIHESRTKLEQDLRAQASDNREI 130
Query: 489 STELQQIKDMSNHQKKRINEMLTNLLK 515
+ +K +K ++ L L +
Sbjct: 131 DKRMNSLKPDLMQLRKIRDQYLVWLTQ 157
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of
spectrin, alpha-helical linker region, 3-helix
coiled-coil, structural protein; 2.50A {Gallus gallus}
SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Length = 322
Score = 33.7 bits (77), Expect = 0.18
Identities = 25/173 (14%), Positives = 63/173 (36%), Gaps = 11/173 (6%)
Query: 352 HKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEV 411
K+L+ + D +L ++ + + + + +L+ +N KEE+
Sbjct: 127 EKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEI 186
Query: 412 KELITTARRDYEQLQGEMTRLTQENESAKE------EVKEVLQALEEL-----AVNYDQK 460
++ + +++L+ Q E + E V+E + E + +Y
Sbjct: 187 QQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGDT 246
Query: 461 SQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNL 513
++ K+ E + T+ + +N + + +NH + I + L
Sbjct: 247 LAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGL 299
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 33.7 bits (77), Expect = 0.27
Identities = 19/102 (18%), Positives = 38/102 (37%)
Query: 409 EEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKN 468
+V LI R E+ Q + ++ + +VK++ +L + D K+++ K
Sbjct: 1902 NQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKL 1961
Query: 469 KEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEML 510
K+ + +KQ +L QK + L
Sbjct: 1962 KQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADL 2003
Score = 28.7 bits (64), Expect = 8.3
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 13/49 (26%)
Query: 598 SGL---MLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKE 643
S L L ER ++R L + Q ++ KL+
Sbjct: 2306 SSLQSQCLHEALKTERPDTHKKRSDL----------LKIQGEFQVKLRI 2344
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 32.9 bits (75), Expect = 0.31
Identities = 16/109 (14%), Positives = 46/109 (42%), Gaps = 4/109 (3%)
Query: 390 YEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQA 449
+E+ +M + +E E E ++ + + EM+ L +E KE++ + ++
Sbjct: 161 FEKCYQKMGEIVKEYEKRLERIEGELNYKEESLKARLKEMSNLEKE----KEKLTKFVEY 216
Query: 450 LEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDM 498
L+++ + + + + K + + L + + + ++ KD
Sbjct: 217 LDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDF 265
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 32.9 bits (74), Expect = 0.39
Identities = 26/132 (19%), Positives = 52/132 (39%), Gaps = 9/132 (6%)
Query: 388 RDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVL 447
+ EQ ++ + Q+ E + V+ L +Y+ L+ + N + + ++ +
Sbjct: 16 QMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLK-SQGDMQDLNGNNQSVTRQKM 74
Query: 448 QALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRIN 507
Q LE++ DQ + + ++ + E + Q TL T EL K Q+
Sbjct: 75 QQLEQMLTALDQMRRSIVSELAGLLSAMEYV---QKTL--TDEELADWK---RRQQIACI 126
Query: 508 EMLTNLLKDLCE 519
N+ D E
Sbjct: 127 GGPPNICLDRLE 138
Score = 31.7 bits (71), Expect = 0.92
Identities = 25/193 (12%), Positives = 63/193 (32%), Gaps = 24/193 (12%)
Query: 335 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQ 394
R+++ LE + + + + L+ + + + + +QL+
Sbjct: 26 RKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQDLNGNNQSVTRQKM-------QQLE 78
Query: 395 GEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELA 454
+T L Q S E+ L+ E +Q + +E K +++A
Sbjct: 79 QMLTALDQMRRSIVSELAGLL----SAMEYVQKTL--TDEELADWKRR--------QQIA 124
Query: 455 VNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIK---DMSNHQKKRINEMLT 511
+ ++ +L E + + Q++ D + + E +
Sbjct: 125 CIGGPPNICLDRLENWITSLAESQLQTRQQIKKLEELQQKVSYKGDPIVQHRPMLEERIV 184
Query: 512 NLLKDLCEIGLVI 524
L ++L + V+
Sbjct: 185 ELFRNLMKSAFVV 197
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 32.7 bits (74), Expect = 0.40
Identities = 37/272 (13%), Positives = 91/272 (33%), Gaps = 6/272 (2%)
Query: 232 ISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLE 291
+ +K + +N + R E+ + ++ + E EL + L+ E +
Sbjct: 8 MQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDA 67
Query: 292 DTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQ------RQKISFLENNL 345
+ + + V L RI+ + + + A + E +
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 346 DQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENE 405
+ ++ +L + + + + + E + +E
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 406 SAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVE 465
E++E I T + + L+ + + +Q+ + +EE+K + L+E + + V
Sbjct: 188 GKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 247
Query: 466 TKNKEFETLTEELTLKQTTLNTTSTELQQIKD 497
K + L +EL ++ S EL +
Sbjct: 248 KLEKSIDDLEDELYAQKLKYKAISEELDHALN 279
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A
{Drosophila melanogaster}
Length = 290
Score = 32.5 bits (73), Expect = 0.40
Identities = 26/161 (16%), Positives = 59/161 (36%), Gaps = 7/161 (4%)
Query: 292 DTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKV 351
V E + + ++ +L + + + E+ +L Q ++ LE+ + K
Sbjct: 70 KGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLMQIKERKDLEDLFKKAQKP 129
Query: 352 HKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEV 411
+L+ + + K R+ + + A D ++ ++ + K++V
Sbjct: 130 WAKLLAKVEKAKADYHSACKTERSATNQERN---ANADSSLSPDQVKKMHDRVQKTKDQV 186
Query: 412 KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 452
++ R YEQ E+T+ V E Q E+
Sbjct: 187 QK----CREKYEQAIAEITKYNSVYIEDMTSVFEKCQTFEK 223
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.70A
{Homo sapiens}
Length = 350
Score = 32.6 bits (73), Expect = 0.49
Identities = 23/161 (14%), Positives = 51/161 (31%), Gaps = 6/161 (3%)
Query: 292 DTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKV 351
E + + L L + + + E + K + + D K
Sbjct: 91 MAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKET--KEAEDGFRKA 148
Query: 352 HKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEV 411
K + ++ + + ++ D ++ +L + E K++V
Sbjct: 149 QKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDV 208
Query: 412 KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 452
+ + YE+ E+ + T + E+V E Q EE
Sbjct: 209 LK----TKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEE 245
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 32.1 bits (72), Expect = 0.66
Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Query: 603 GSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNE 662
G L+ ++EEER ++ + + E+ Q + K K Q ++ E +
Sbjct: 310 GQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEA-------ELQR 362
Query: 663 RREQARKDLKGLEDTVTKELQTLHNLRKLFVQDQVTSSQ 701
R EQ +K+L+ + ++ + + + + Q Q
Sbjct: 363 RHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQ 401
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal
binding protein, structural genomics, NPPSFA; 2.21A
{Pyrococcus horikoshii}
Length = 342
Score = 32.2 bits (72), Expect = 0.67
Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 380 VKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQG------EMTRLT 433
++ + R + +T + EN + E+ +LI AR + + + RLT
Sbjct: 226 LRFLELMRDLPTRTVVRLTLVKGENMHSPEKYAKLILKARPMFVEAKAYMFVGYSRNRLT 285
Query: 434 QENESAKEEVKEVLQALEELAVNYD 458
N + ++++E +AL + Y
Sbjct: 286 INNMPSHQDIREFAEALVKHLPGYH 310
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.00A
{Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A
3q84_A
Length = 312
Score = 31.7 bits (71), Expect = 0.73
Identities = 23/161 (14%), Positives = 50/161 (31%), Gaps = 6/161 (3%)
Query: 292 DTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKV 351
E + + L L + + + E + K + D K
Sbjct: 91 MAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKE--TKEAEDGFRKA 148
Query: 352 HKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEV 411
K + ++ + + ++ D ++ +L + E K++V
Sbjct: 149 QKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDV 208
Query: 412 KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 452
+ + YE+ E+ + T + E+V E Q EE
Sbjct: 209 LK----TKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEE 245
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 31.8 bits (72), Expect = 0.95
Identities = 31/283 (10%), Positives = 94/283 (33%), Gaps = 18/283 (6%)
Query: 235 MKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTV 294
++ + + + K EY + + + +L+
Sbjct: 708 LERSTIDAITLFGDKNTKNVVLEKSYTEYMEGFTDA-ATGEAKRGFMTVVSELEQRFPDP 766
Query: 295 TKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQ 354
T +++ +K FV+ ++ + ++ A +Q +++ H
Sbjct: 767 T-SIESE-KEKKDFVKLFGEYLRAENILQNYDEFATLKALQQIDLSDPVAVEKFKAEHYV 824
Query: 355 LVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKEL 414
A+L+ +++++ I +R ++ + + T ++ E +L
Sbjct: 825 DDEKFAELQTIRLPADRKIQDYRSAYNDIRDWQRREKEAEKKEKSTTDWDDVVFE--VDL 882
Query: 415 ITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETL 474
+ + + + + G + ++N+ E ++EV + + N ++ V+
Sbjct: 883 LKSQEINLDYILGLIFEHNRQNKGKGEMIEEVKRLIRSSLGNRAKEGLVVD--------- 933
Query: 475 TEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDL 517
++QT L+ + I ++ L+K+
Sbjct: 934 ----FIQQTNLDDLPDKASIIDAFFTFAQREQQREAEALIKEE 972
>2i71_A Hypothetical protein; structural genomics, APC6294, PSI-2, protein
structure initia midwest center for structural genomics,
MCSG; 1.70A {Sulfolobus solfataricus} SCOP: e.72.1.1
Length = 400
Score = 31.4 bits (70), Expect = 1.0
Identities = 42/263 (15%), Positives = 85/263 (32%), Gaps = 14/263 (5%)
Query: 117 LIVFPGATERFVGKPEEVF-----EVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQEN 171
+V P ++F GKP+ F + + V H V Q
Sbjct: 106 YVVAPNVYQKFKGKPDHYFTYIYYHSLRILEKEGINEVFIDTTHGINYMGVLAKEAIQLA 165
Query: 172 LENEKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAGKLEEEFTVARLY 231
+ S K V L S+ V K ++ L E + I S + + + +
Sbjct: 166 VSAYAAKSEKEVKVSLYNSDPVGKDVSDTVKLHEIEAIKISPLSGLKYVTYQILNKDKNF 225
Query: 232 ISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLE 291
+K+ S+ N + R + + + + L L + + ++ +
Sbjct: 226 FNKIFSDSVNAIPRFATALDNGLFIYLSEKDSSLHLKRLEDDLSKDPLLTPSENEINVVY 285
Query: 292 DTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKV 351
+ L H L + +R +V + + A + + +EN +D++ K
Sbjct: 286 KDMKYAL--SHALFYVI-----SRFSGNVDLDTLRHYAETYADKVTRAIIENEVDKIEKY 338
Query: 352 HKQLVRD--NADLRCELPKLEKR 372
R ++ E +KR
Sbjct: 339 QMGSERKLLGEYMKVEGKGFDKR 361
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 31.3 bits (70), Expect = 1.2
Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 3/127 (2%)
Query: 379 RVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENES 438
R KL +D + + E + EL +++ E Q + R+ ++
Sbjct: 300 RCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGEL---QKKEEEMRQMFVQRVKEKEAE 356
Query: 439 AKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDM 498
KE KE+ + + L + + +++E K K + ++T ++ Q
Sbjct: 357 LKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGS 416
Query: 499 SNHQKKR 505
++ +
Sbjct: 417 QTLKRDK 423
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 31.4 bits (70), Expect = 1.3
Identities = 36/256 (14%), Positives = 87/256 (33%), Gaps = 12/256 (4%)
Query: 397 MTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVN 456
M +E + AK+ +E + E+ + + +EE++ L E
Sbjct: 305 MKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLE---- 360
Query: 457 YDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKD 516
+E + ++ + EEL +Q L L++ K+M +++++ + + ++
Sbjct: 361 AQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEE 420
Query: 517 LCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDEQVNLADPVDM 576
+ I + ++++ +L+EE AR +
Sbjct: 421 VSRI------QQEVELKDSETRRLQEEVEDARRKQDEAAAALLAATTPQHHHVAERADTD 474
Query: 577 AASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQ 636
+ + G +R+ L E ERL+ QL +++ +
Sbjct: 475 PDHDNASDAGS--ESGGGDLARGPDDLVDPVADRRTLAERNERLHNQLKALKQDLARSCD 532
Query: 637 YAEKLKEQIMEQEEVS 652
++ + +E V
Sbjct: 533 ETKETAMDKIHRENVR 548
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 31.4 bits (70), Expect = 1.4
Identities = 40/286 (13%), Positives = 96/286 (33%), Gaps = 9/286 (3%)
Query: 220 KLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNER 279
+ + + + ++ ++ C E E ++ + + ++ ++L +
Sbjct: 82 NIRKSKRNLQDNFQEDPIQMSMIIYSCLKEERKILENAQRFNQAQSGNIQSTVMLDKQKE 141
Query: 280 REQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKIS 339
+ +++K + E+++L +L+ + + K E + Q+Q+
Sbjct: 142 LDSKVRNVKDKVMCIEHEIKSLEDLQDEYDF----KCKTLQNREHETNGVAKSDQKQEQL 197
Query: 340 FLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARR-DYEQLQGEMT 398
L+ L K++V +L + L +L+ RR + G
Sbjct: 198 LLKKMYLMLDNKRKEVVHKIIELLNVTELTQNAL----INDELVEWKRRQQSACIGGPPN 253
Query: 399 RLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYD 458
+ ++ V E + R+ ++L+ + T E++ + + + L
Sbjct: 254 ACLDQLQNWFTIVAESLQQVRQQLKKLEELEQKYTYEHDPITKNKQVLWDRTFSLFQQLI 313
Query: 459 QKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKK 504
Q S VE + L LK T L N+ K
Sbjct: 314 QSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQELNYNLK 359
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse,
BAR domain, endocytosis; 2.60A {Mus musculus} PDB:
3qe6_A
Length = 320
Score = 30.6 bits (68), Expect = 1.6
Identities = 24/161 (14%), Positives = 47/161 (29%), Gaps = 6/161 (3%)
Query: 292 DTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKV 351
+ L L + L + V + + + S D K
Sbjct: 82 HAFFTAAERLSELHLEVREKLHGPDSERVRTWQRGAFHRPVLGGFRAS--RAAEDGFRKA 139
Query: 352 HKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEV 411
K ++ ++ + + A+ D Q ++ +L + +E
Sbjct: 140 QKPWLKRLKEVEASKKSYHTARKDEKTAQTRESHAKADSSMSQEQLRKLQERVGRCTKEA 199
Query: 412 KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 452
++ + YEQ E+ R T E+ E QA E
Sbjct: 200 EK----MKTQYEQTLAELNRYTPRYMEDMEQAFESCQAAER 236
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer, ligase; HET: FYA; 2.50A {Thermus
thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A
1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A*
2amc_A*
Length = 350
Score = 30.7 bits (70), Expect = 1.6
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 602 LGSLSNEER----QKLEEERERLYQQLDEKDEEINQQSQYAEKLKE 643
L +L EER Q+L + L L+ +++ + +++ E L+
Sbjct: 39 LSALPLEERRKRGQELNAIKAALEAALEAREKAL-EEAALKEALER 83
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP;
3.02A {Escherichia coli}
Length = 327
Score = 30.6 bits (70), Expect = 1.7
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 602 LGSLSNEER----QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQI 645
L L EER + E +E++ Q L+ + E+ + A E I
Sbjct: 45 LRELPPEERPAAGAVINEAKEQVQQALNARKAELESAALNARLAAETI 92
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis,
centromere, cell cycle, microtubule, C division,
calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Length = 250
Score = 30.5 bits (68), Expect = 1.7
Identities = 10/90 (11%), Positives = 25/90 (27%), Gaps = 4/90 (4%)
Query: 364 CELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYE 423
+ L + +++ ++ RL +E +
Sbjct: 138 ACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPS----AVYVA 193
Query: 424 QLQGEMTRLTQENESAKEEVKEVLQALEEL 453
QL +++++ E E VK +
Sbjct: 194 QLYHQVSKIEWEYECEPGMVKGIHHGPSVA 223
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding,
kinetoch replication-replication complex; 3.05A
{Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Length = 190
Score = 30.1 bits (67), Expect = 2.0
Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 397 MTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEV---LQALEEL 453
M LT S K+++ A L E L+++ ++ E+K++ + +L
Sbjct: 1 MDPLTVYKNSVKQQIDS----ADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQ 56
Query: 454 AVNYDQKSQEVETKNKEFETLTEELT 479
++ + ++ + L E L
Sbjct: 57 VKELKTQTSQQAENSEVIKDLYEYLC 82
>3k8w_A Flagellin homolog; flagellum, structural protein, bacterial
flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A
Length = 326
Score = 30.3 bits (68), Expect = 2.0
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 432 LTQENESAKEEVKEVLQALEELAV---NYDQKSQEVETKNKEFETLTEELT--LKQTTLN 486
L Q E A E+ LQ + ELAV N + + E L E+ +QT+ N
Sbjct: 54 LAQTAEGALGEISNNLQRIRELAVQASNGTNTQTDRDALQAEVTQLQSEIQRVAEQTSFN 113
Query: 487 TT 488
Sbjct: 114 GQ 115
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin,
overlap complex, coiled-coils, contractIle PROT; HET:
DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Length = 175
Score = 29.7 bits (66), Expect = 2.3
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 402 QENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 452
++ E+ E ++ELI + + + L ++ AKEE + Q L++
Sbjct: 117 EKVENPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQ 167
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma,
lipid binding protein; 1.7A {Homo sapiens} SCOP:
a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Length = 165
Score = 29.3 bits (65), Expect = 2.6
Identities = 13/79 (16%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 602 LGSLSNEERQKLEEERERLYQQLDEKDEEINQQ-SQYAEKLKEQIMEQEEVSGLLVCGQT 660
L ++ E R +L +E + +L E++ + QY +++ + + E + +
Sbjct: 82 LTPVAEETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHL 141
Query: 661 NERREQARKDLKGLEDTVT 679
+ R++ +D L+ +
Sbjct: 142 RKLRKRLLRDADDLQKRLA 160
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo
sapiens} PDB: 2qa7_A
Length = 120
Score = 28.6 bits (63), Expect = 2.8
Identities = 18/104 (17%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Query: 391 EQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 450
E+L E++ L + E+ K E + ++ + +L+ ++ + A ++ + + L
Sbjct: 18 ERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAEL 77
Query: 451 EELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQ 494
+EL + +++ + E E + + + L +EL Q
Sbjct: 78 DELR-RQREDTEKAQRSLSEIERKAQANEQRYSKLKEKYSELVQ 120
>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy,
helical reconstruction, structural protein; 4.00A
{Salmonella typhimurium} SCOP: e.32.1.1 PDB: 3a5x_A
Length = 494
Score = 30.1 bits (67), Expect = 3.1
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 432 LTQENESAKEEVKEVLQALEELAV---NYDQKSQEVETKNKEFETLTEELT--LKQTTLN 486
+ Q E A E+ LQ + ELAV N ++++ E E+ QT N
Sbjct: 73 IAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFN 132
Query: 487 TT 488
Sbjct: 133 GV 134
>1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular
transglucosylation, isomerase; HET: MLZ MLY; 1.90A
{Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1
Length = 720
Score = 29.9 bits (67), Expect = 3.3
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 4/77 (5%)
Query: 382 LITTARRD--YEQLQGEMTRLTQENESAKEEVKELITTAR--RDYEQLQGEMTRLTQENE 437
I + E E+ RL + + + +++ ++ R Y + T E E
Sbjct: 308 SIXKIKAQIIDELFSYEVXRLASQLGISYDILRDYLSCIDVYRTYANQIVKECDKTNEIE 367
Query: 438 SAKEEVKEVLQALEELA 454
A + E L++
Sbjct: 368 EATKRNPEAYTKLQQYM 384
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo
sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Length = 121
Score = 28.7 bits (63), Expect = 3.3
Identities = 13/74 (17%), Positives = 35/74 (47%)
Query: 383 ITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEE 442
+T A++ ++ ++ + + + ++ E+L+GE+T L + + A E
Sbjct: 34 LTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAE 93
Query: 443 VKEVLQALEELAVN 456
V+ + + + L+V
Sbjct: 94 VERLRRENQVLSVR 107
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein,
muscle, Z- LINE, actin-binding protein; 2.8A {Homo
sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Length = 476
Score = 29.5 bits (65), Expect = 4.0
Identities = 52/446 (11%), Positives = 122/446 (27%), Gaps = 24/446 (5%)
Query: 250 ESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFV 309
+ E + EYE+ E ++ + R K ++ + K+L+ + R+
Sbjct: 3 SAVNQENERLMEEYERLASELLEWIRRTIPWLENRTPEKTMQA-MQKKLEDFRDYRRKHK 61
Query: 310 QDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKL 369
K + E + +L + +IS + K+ + L
Sbjct: 62 PP------KVQEKCQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGY 115
Query: 370 EKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEM 429
E+ L + R++ + + Q E + + + L +
Sbjct: 116 EEWLLNEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLT-EVRALLRKH 174
Query: 430 TRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETK----NKEFETLTEELTLKQTTL 485
+ + ++ V+++ +EL + V + +++ L ++ L
Sbjct: 175 EAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREAL 234
Query: 486 NTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFT 545
L+ I + KR + E + + + + + L
Sbjct: 235 ERMEKLLETIDQLHLEFAKRAAPFN-----NWMEGAMEDLQDMFIVHSIEEIQSLITAH- 288
Query: 546 VARLYISKMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSL 605
+ + + Q + + + + + + L
Sbjct: 289 -EQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQL 347
Query: 606 SNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERRE 665
Q L+EE R + Q + A + I + E Q E
Sbjct: 348 VPIRDQSLQEELAR----QHANERLRRQFAAQANAIGPWIQNKMEEI-ARSSIQITGALE 402
Query: 666 QARKDLKGLEDTVTKELQTLHNLRKL 691
LK E + + L
Sbjct: 403 DQMNQLKQYEHNIINYKNNIDKLEGD 428
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 88
Score = 27.3 bits (61), Expect = 4.5
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 362 LRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRD 421
LR ++P+LE +A +V ++ A +Q E +L E + ++ ++L +
Sbjct: 28 LRDQIPELENNEKAP--KVVILKKATAYILSVQAEEQKLISEEDLLRKRREQL----KHK 81
Query: 422 YEQLQG 427
EQL G
Sbjct: 82 LEQLGG 87
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 29.1 bits (64), Expect = 4.6
Identities = 15/124 (12%), Positives = 46/124 (37%)
Query: 558 NGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEER 617
N E AS A A + +G G + + +L +E
Sbjct: 40 NDEGFGAPAGSQGGLAQPGPASGASEDMGATVNGDVFQEANGPADGYAAIAQADRLTQEP 99
Query: 618 ERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQARKDLKGLEDT 677
E + + +E+ + + + ++ ++++ E+ + + +E+ E+ + + + +
Sbjct: 100 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 159
Query: 678 VTKE 681
++
Sbjct: 160 FYQQ 163
>1p9b_A Adenylosuccinate synthetase; ligase; HET: IMO GDP; 2.00A
{Plasmodium falciparum} SCOP: c.37.1.10
Length = 442
Score = 29.4 bits (67), Expect = 4.9
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 598 SGLMLGSLSNEE--RQKLE---EERERLYQQLD-EKDEEINQQSQYAEKLK 642
G+ LG+L N E + + LY + +K++E+N Y KL+
Sbjct: 156 IGIRLGTLKNFENFKNMYSKLIDHLMDLYNITEYDKEKELNLFYNYHIKLR 206
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle,
signal transduction, methyl-accepting receptor; 2.5A
{Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Length = 309
Score = 29.2 bits (66), Expect = 4.9
Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 13/118 (11%)
Query: 391 EQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQG-------------EMTRLTQENE 437
+++ + + V+E A E+L + +E
Sbjct: 187 NEIRSIAEDAGKVSSEITARVEEGTKLADEADEKLNSIVGAVERINEMLQNIAAAIEEQT 246
Query: 438 SAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQI 495
+A +E+ + + A +EV + +E TEE+T + T+ L++I
Sbjct: 247 AAVDEITTAMTENAKNAEEITNSVKEVNARLQEISASTEEVTSRVQTIRENVQMLKEI 304
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament,
structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Length = 93
Score = 27.6 bits (62), Expect = 5.1
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 350 KVHKQLVRDNADLRCELPKLEKRLRATMERV--KLITTARRDYEQLQGEMTRLTQENESA 407
KV L + N L EL +L+ + ++ + + + + RR +QL + R+ E ++
Sbjct: 24 KVR-FLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNL 82
Query: 408 KEEVKEL 414
E++ L
Sbjct: 83 AEDIMRL 89
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix
protein, transcription; 2.20A {Staphylococcus aureus}
SCOP: a.4.5.28 a.4.5.28
Length = 250
Score = 28.9 bits (64), Expect = 5.3
Identities = 35/183 (19%), Positives = 67/183 (36%), Gaps = 5/183 (2%)
Query: 262 EYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVT 321
E + + E LL ++E K + D K+ + +++ L ++ +S
Sbjct: 29 EVDMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISK-VRSKI 87
Query: 322 AEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVK 381
E + S QR+KI+ DQ+ K + + D ++ + ++ L M +
Sbjct: 88 DERNTYISISEEQREKIAERVTLFDQIIK--QFNLADQSESQMIPKDSKEFLNLMMYTMY 145
Query: 382 LITTARRDYEQLQGEMTRLTQENESAKEE--VKELITTARRDYEQLQGEMTRLTQENESA 439
++ E T L K +K+LI T Y Q + L ++
Sbjct: 146 FKNIIKKHLTLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLI 205
Query: 440 KEE 442
KE
Sbjct: 206 KER 208
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K,
phosphoinositide-3-kinase, influenza virus, NS1; 2.30A
{Bos taurus} PDB: 2v1y_B
Length = 170
Score = 28.6 bits (63), Expect = 5.3
Identities = 19/90 (21%), Positives = 36/90 (40%)
Query: 606 SNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERRE 665
+ E +L EE R Q+L K I ++ + +EQ QE+ S + E E
Sbjct: 29 KSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNE 88
Query: 666 QARKDLKGLEDTVTKELQTLHNLRKLFVQD 695
+ + + + + + +H R Q+
Sbjct: 89 KEMQRILLNSERLKSRIAEIHESRTKLEQE 118
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 28.5 bits (63), Expect = 5.5
Identities = 25/174 (14%), Positives = 65/174 (37%), Gaps = 5/174 (2%)
Query: 337 KISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRAT-MERVKLITTARRDYEQLQG 395
S L+ ++ + + + R EL + ++ R E + A + LQ
Sbjct: 4 DFSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQA 63
Query: 396 EMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAV 455
+ RL E E+ KE+++ + + L+ ++++ E + ++ LE+
Sbjct: 64 DNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKY----VRELEQAND 119
Query: 456 NYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEM 509
+ ++ + ++FE + + L + E + + K ++
Sbjct: 120 DLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDL 173
Score = 27.8 bits (61), Expect = 8.8
Identities = 33/177 (18%), Positives = 67/177 (37%), Gaps = 7/177 (3%)
Query: 310 QDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKL 369
++L + K+S E R+ + LE L Q + ++ L DN L+ E+ L
Sbjct: 16 KELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEAL 75
Query: 370 EKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEM 429
+++L + + L+ ++++ E + V+EL A D E+ +
Sbjct: 76 KEKLE------HQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVREL-EQANDDLERAKRAT 128
Query: 430 TRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLN 486
++ E + E LE + V+ E L +EL +++
Sbjct: 129 IMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQELAVRERQQE 185
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle
protein; 2.50A {Gallus gallus}
Length = 101
Score = 27.6 bits (61), Expect = 5.9
Identities = 11/72 (15%), Positives = 31/72 (43%)
Query: 423 EQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQ 482
E ++ +M L + E+A + ++ ++ Q +E + K+ + +E+
Sbjct: 5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYS 64
Query: 483 TTLNTTSTELQQ 494
++ +L+Q
Sbjct: 65 ESVKEAQEKLEQ 76
Score = 27.2 bits (60), Expect = 7.3
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 391 EQLQGEMTRLTQENESAKEEVKELITTARRDYE---QLQGEMTRLTQENESAKEEVKEVL 447
+ L+ + E A+ + K+ ++ E LQ ++ E E E VKE
Sbjct: 12 QMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQ 71
Query: 448 QALEELAVNYDQKSQEVETKNKEFETLTEE 477
+ LE+ EV + N+ + + EE
Sbjct: 72 EKLEQAEKKATDAEAEVASLNRRIQLVEEE 101
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 29.1 bits (64), Expect = 6.1
Identities = 42/288 (14%), Positives = 90/288 (31%), Gaps = 29/288 (10%)
Query: 262 EYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVT 321
E + ++ + + E K L+ L+D + +TL N ++ K+
Sbjct: 6 ELDSKVRNVKDKVMCIE---HEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQL 62
Query: 322 AEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVK 381
+ +++ + + L+ L+ D EL + ++R ++
Sbjct: 63 LLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALIND------ELVEWKRRQQS------ 110
Query: 382 LITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKE 441
+ G + ++ V E + R+ ++L+ + T E++ +
Sbjct: 111 ---------ACIGGPPNACLDQLQNWFTIVAESLQQVRQQLKKLEELEQKYTYEHDPITK 161
Query: 442 EVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNH 501
+ + L Q S VE + L LK T L N+
Sbjct: 162 NKQVLWDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQELNY 221
Query: 502 QKKR-----INEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEF 544
K + N +K + ++ M + G L EF
Sbjct: 222 NLKVKVLFDKDVNERNTVKGFRKFNILGTHTKVMNMEESTNGSLAAEF 269
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine
acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Length = 507
Score = 29.1 bits (64), Expect = 6.1
Identities = 14/66 (21%), Positives = 23/66 (34%)
Query: 434 QENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQ 493
+ N ++ K LQ Y ++ + TEE +K L T+
Sbjct: 367 KLNAEKLKDFKIRLQYFARGLQVYIRQLRLALQGKTGEALKTEENKIKVVALKITNNINV 426
Query: 494 QIKDMS 499
IKD+
Sbjct: 427 LIKDLF 432
>3v47_C Flagellin; innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Salmonella enterica
subsp}
Length = 425
Score = 28.8 bits (63), Expect = 6.8
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 432 LTQENESAKEEVKEVLQALEELAV---NYDQKSQEVETKNKEFETLTEELT--LKQTTLN 486
+ Q E A E+ LQ + EL+V N ++++ E + EE+ QT N
Sbjct: 33 IAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQFN 92
Query: 487 TT 488
Sbjct: 93 GV 94
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine
biosynthesis, lyase; 1.74A {Treponema denticola} PDB:
3rgg_A*
Length = 159
Score = 27.9 bits (63), Expect = 7.1
Identities = 5/33 (15%), Positives = 13/33 (39%)
Query: 601 MLGSLSNEERQKLEEERERLYQQLDEKDEEINQ 633
+ E ++ E Q++ E D ++ +
Sbjct: 127 IFSLYDKEIADSVKSYMESNAQKIIEDDSKLKR 159
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 28.7 bits (64), Expect = 7.9
Identities = 20/153 (13%), Positives = 52/153 (33%), Gaps = 6/153 (3%)
Query: 419 RRDYEQLQGEMTRLTQENESAK--EEVKEVLQALEE-LAVNYDQKSQEVETKNKEFETLT 475
+ +++ + + + A + V Q +E+ L + + + V E + L
Sbjct: 90 NALQRKHNAKLSEILENGKKAAIAAKPTSVKQEVEKILGIEHRTFIRTVFLPQGEIDKL- 148
Query: 476 EELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSD 535
L + + +++ Q K+ +K + E + L ++ G K +
Sbjct: 149 --LISPPSEITEIISDVFQSKETLEKLEKLLKEKMKKLENEISSGGAGGAGGSLEKKLKE 206
Query: 536 GAGKLEEEFTVARLYISKMKWRNGETVKEDEQV 568
+ + + + K + T + E V
Sbjct: 207 MSDEYNNLDLLRKYLFDKSNFSRYFTGRVLEAV 239
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 28.8 bits (64), Expect = 8.1
Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 7/120 (5%)
Query: 368 KLEKRLRATMERVKLITTARRDYEQLQG-EMTRLTQENESAKEEVKELITTARRDYEQLQ 426
K++++ +E V + E + L + S + + E RR LQ
Sbjct: 118 KIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQ 177
Query: 427 GEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQE------VETKNKEFETLTEELTL 480
E+ T +E ++ + AL+ QE E +EE+ L
Sbjct: 178 KEIGERTHAETVMVKEYRDKIDALKNAIEVERDGMQEEAIQEIAGMTADVLEAASEEVPL 237
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold,
structural genomics, NPPSFA; 2.31A {Methanocaldococcus
jannaschii}
Length = 157
Score = 27.6 bits (62), Expect = 8.2
Identities = 8/36 (22%), Positives = 19/36 (52%)
Query: 601 MLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQ 636
+L +KL E RE++ +++ DE++ + +
Sbjct: 122 ILALKDENIAKKLIEYREKMKKKVYASDEKVKEMFK 157
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon,
crotonase superfamily, spiral domain, ligase; 3.20A
{Escherichia coli} SCOP: c.14.1.4
Length = 339
Score = 28.5 bits (64), Expect = 8.6
Identities = 10/45 (22%), Positives = 23/45 (51%)
Query: 336 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERV 380
Q I+ LE +D LT +Q + + ++ E+ +L ++ ++
Sbjct: 30 QPIAELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKI 74
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break
repair, V(D)J recombination, protein-protein complex,
coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP:
b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Length = 213
Score = 27.9 bits (61), Expect = 9.1
Identities = 13/66 (19%), Positives = 28/66 (42%)
Query: 402 QENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKS 461
++ E+ E ++ELI A + Q + L +ENE + +V E+ +
Sbjct: 114 EKVENPAEVIRELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALE 173
Query: 462 QEVETK 467
++ +
Sbjct: 174 TDLYKR 179
>3ezu_A Ggdef domain protein; multidomain protein of unknown function with
GG domain, structural genomics, joint center for
structural GE JCSG; 1.95A {Geobacter sulfurreducens}
Length = 342
Score = 28.3 bits (63), Expect = 9.4
Identities = 25/206 (12%), Positives = 56/206 (27%), Gaps = 21/206 (10%)
Query: 240 KNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQ 299
++VA C +E + K + R + + L++ +E
Sbjct: 8 NDIVAACLELERKASSVFKMFAAHAGSDEARRFWETVADETRHHSAVYERLQERGGRENL 67
Query: 300 TLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKI---SFLENNLDQLTKVHKQLV 356
+ + + I KS+ + ++ + L +L
Sbjct: 68 PIIIYKPAETLEELEMIGKSIDEQVERYTEAPSSEAACLLGFRLQLYLLHPAFASLCRLT 127
Query: 357 RDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELIT 416
RD + + LR ++ + A + E L + RL E +L
Sbjct: 128 RDASGEDLPDIGYGRYLRRFIDGIGSCGLATAETELLGEALFRLWNEAR-------QLAA 180
Query: 417 TARRD-----------YEQLQGEMTR 431
+ D ++ +
Sbjct: 181 QSHFDALTGVMTRAGFFKTVGSLAYA 206
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.127 0.336
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,186,852
Number of extensions: 632307
Number of successful extensions: 2476
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2198
Number of HSP's successfully gapped: 451
Length of query: 720
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 620
Effective length of database: 3,909,693
Effective search space: 2424009660
Effective search space used: 2424009660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.0 bits)